Spreadsheet: 009f131d-5da5-4f2a-a88b-8ee390b279d1
Sheet: Sheet1

[NAME], [NAME] S4 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4
Gene | Locus | Seedling | Cell_culture | ChromDB Annotation
AGO1 | At1g48410 | 1.049 | 0.542 | A PIWI/PAZ domain containing member of the Argonaute gene family involved in RNA silencing
AGO10 | At5g43810 | 2.813 | 0.64 | A PIWI/PAZ domain containing member of the Argonaute gene family. PHN is involved in develomental regulation, not RNA silencing.
AGO2 | At1g31280 | 0.456 | 14.59 | A PIWI/PAZ domain containing member of the Argonaute gene family.
[NAME] | At1g31290 | 0.357 | 1.007 | A PIWI/PAZ domain containing member of the Argonaute gene family.
AGO4 | At2g27040 | 1.022 | 2.24 | A PIWI/PAZ domain containing member of the Argonaute gene family.
AGO5 | At2g27880 | 0.48 | 7.122 | A PIWI/PAZ domain containing member of the Argonaute gene family.
AGO9 | At5g21150 | 0.448 | 1.179 | A PIWI/PAZ domain containing member of the Argonaute gene family.
ARID4 | At3g43240 | 0.779 | 1.317 | In progress
ARID5 | At1g76510 | 0.722 | 1.019 | In progress
ARP6 | At3g33520 | 0.991 | 2.062 | Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes; putative homolog of Saccharomyces cerevisiae ARP6
ARP7 | At3g60830 | 0.922 | 2.413 | Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes; homolog of similar to Arabidopsis ARP4
ARP9 | At5g43500 | 0.994 | 3.406 | Nuclear actin-related protein involved in chromatin remodeling, component of chromatin-remodeling enzyme complexes; putative homolog of Saccharomyces cerevisiae ARP8
BRD5 | At1g58025 | 1.014 | 3.026 | Single bromodomain-protein; bromodomains are found in many chromatin associated proteins and can interact specifically with acetylated lysine
BRD6 | At3g60110 | 1.029 | 0.749 | Single bromodomain- and Myb_DNA-binding-containg protein; bromodomains are found in many chromatin associated proteins and can interact specifically with acetylated lysine
BRWD3 | At2g47410 | 1.046 | 0.566 | A bromodomain containing protein with WD-40 repeats
CHB1 | At2g47620 | 0.529 | 1.03 | Chromatin remodeling complex subunit B; probable ortholog of yeast SWI3 & RSC8; components of the SWI/SNF and RSC chromatin remodeling complexes
CHB4 | At1g21700 | 1.004 | 0.414 | Chromatin remodeling complex subunit B; probable ortholog of yeast SWI3 & RSC8; components of the SWI/SNF and RSC chromatin remodeling complexes
CHC1 | At5g14170 | 0.792 | 1.021 | SWIB domain-containing protein; sequence similarity indicates the protein is a likely homolog of Homo sapiens SMARD proteins and Saccharomyces cerevisiae SWP73 and RSC6 proteins; potential SWI/SNF complex component
CHE1 | At3g17590 | 1.002 | 3.864 | Chromatin remodeling complex subunit E; probable ortholog of yeast SNF5, a component of the yeast SWI/SNF chromatin remodeling complex
CHR1 | At5g66750 | 0.56 | 3.681 | SWI2/SNF2 chromatin remodeling protein involved in the maintenance of DNA methylation
CHR11 | At3g06400 | 1.016 | 0.492 | SNF2 Superfamily; SNF2 Superclass; ISWI class
CHR14 | At5g07810 | 0.677 | 1.611 | SNF2 Superfamily; RAD26 Superclass; HARP class
CHR16 | At3g54280 | 0.718 | 1.006 | SNF2 superfamily chromatin remodeling protein; putative homolog of Saccharomyces cerevisiae MOT1, an essential abundant protein involved in regulation of transcription
CHR21 | At3g57300 | 0.985 | 0.66 | SNF2 Superfamily; SNF2 Superclass; FSI class; INO80 subclass
CHR22 | At5g05130 | 0.695 | 1.008 | SNF2 Superfamily; RIS1 Superclass; SMARCA3 class
CHR3 | At2g28290 | 0.99 | 0.446 | SWI/SNF class chromatin remodeling complex protein involved in transcriptional regulation; putative homolog of Saccharomyces cerevisiae SNF2
CHR33 | At1g61140 | 0.558 | 1.004 | SNF2 Superfamily; RIS1 Superclass; RIS1 class
CHR38 | At3g42670 | 0.572 | 1.543 | SNF2 Superfamily; RAD26 Superclass; DRD1 class
CHR6 | At2g25170 | 0.973 | 0.646 | PKL, a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD (chomodomain helicase domain) group; involved in post-germination repression of embryonic development
CPC1 | At5g48600 | 1.06 | 2.352 | A member of the Structural Maintenance of Chromosome (SMC) superfamily and a member of the condensin sub-family; homolog of Saccharomyces cerevisiae SMC4. Condensins regulate chromsome condensation during cell division.
CPC4 | At3g47460 | 0.527 | 1.014 | A member of the Structural Maintenance of Chromosome (SMC) superfamily and a member of the condensin sub-family; homolog of Saccharomyces cerevisiae SMC2. Condensins regulate chromsome condensation during cell division.
CPC5 | At2g27170 | 0.684 | 0.608 | A member of the Structural Maintenance of Chromosome (SMC) superfamily and a member of the cohesin complex protein sub-family; homolog of Saccharomyces cerevisiae SMC3. Cohesin complexes are reponsible for maintaining sister chromatid cohesion after DNA replication.
CPD1 | At3g57060 | 0.91 | 1.694 | [NAME] complex components subunit D; one of the non-SMC subunits, known as Cnd1 in Schizosaccharomyces pombe, and XCAP-D2 in Xenopus laevis
CPG1 | At5g37630 | 0.995 | 2.807 | [NAME] complex components subunit G; one of the non-SMC subunits
CPH1 | At2g32590 | 0.988 | 3.092 | [NAME] complex components subunit H; one of the non-SMC subunits, similar to the Drosophila Barren ([NAME]) gene which is required for sister-chromatid segregation in mitosis
DCL1 | At1g01040 | 1.043 | 0.298 | Dicer-like; similar to the Drosophila melanogaster gene Dicer, a multidomain ribonuclease essential for RNA silencing
DCL2 | At3g03300 | 0.893 | 1.362 | Dicer-like; similar to the Drosophila melanogaster gene Dicer, a multidomain ribonuclease essential for RNA silencing
DCL3 | At3g43920 | 0.432 | 0.993 | Dicer-like; similar to the Drosophila melanogaster gene Dicer, a multidomain ribonuclease essential for RNA silencing
DMT1 | At5g49160 | 0.954 | 4.768 | a DNA methyltransferase related to the mammalian DNMT1 methyltransferases
DMT10 | At3g17310 | 0.974 | 1.886 | a putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases
[NAME] | At1g69770 | 1.013 | 2.261 | a Class II DNA methyltransferase; a DNA methyltransferase containing a chromodomain (chromomethylase)
[NAME] | At5g15380 | 0.985 | 2.177 | a putative DNA methyltransferase with rearranged catalytic domains; similar to mammalian DNMT3 methyltransferases
[NAME] | At4g12740 | 0.955 | 1.02 | MUTYH (mutY homolog) family of DNA glycosylases in oxidative DNA damage repair; putative homologs Homo sapiens MUTYH
DRB4 | At3g62800 | 0.529 | 1.117 | In progress
EBP1 | At4g22140 | 0.91 | 3.091 | EARLY BOLTING IN SHORT DAYS; mutations at this locus result in an acceleration of flowering, especially in noninductive, short days, photoperiods
EPL1 | At1g16690 | 0.757 | 0.799 | Enhancer of Polycomb-like protein, related to the Drosophila PcG protein Enhancer of Polycomb
[NAME] | At4g10710 | 0.649 | 1.014 | Global transcription factor group C; related to yeast Spt16 protein, which functions as a transcriptional regulator
GTE11 | At3g01770 | 1.059 | 0.445 | Global transcription factor group E (BDF1-FSH-RING3 homologs)
GTE2 | At5g10550 | 0.955 | 0.426 | Global transcription factor group E (BDF1-FSH-RING3 homologs)
GTE8 | At3g27260 | 1.107 | 0.326 | Global transcription factor group E (BDF1-FSH-RING3 homologs)
GTE9 | At5g14270 | 0.976 | 0.704 | Global transcription factor group E (BDF1-FSH-RING3 homologs)
[NAME] | At5g08565 | 0.36 | 5.305 | In progress
HAF1 | At1g32750 | 0.978 | 0.484 | At1g32750, homologous to TAF-II-250, the 250 kD subunit of the TFIID transcription initiation factor complex, a protein with histone acetyl transferase activity.
HAG1 | At3g54610 | 0.81 | 4.121 | A histone acetyltransferase in the GNAT/[NAME] superfamily; probable ortholog of yeast GCN5
HAG2 | At5g56740 | 0.588 | 1.201 | a histone acetyltransferase in the GNAT/[NAME] superfamily; probable ortholog of yeast HAT1
[NAME] | At5g50320 | 0.657 | 1.983 | a histone acetyltransferase in the GNAT/[NAME] superfamily; probable ortholog of yeast ELP3.
HAM2 | At5g09740 | 0.997 | 0.704 | Histone acetyltransferase in the [NAME] family; probable ortholog of yeast ESA1
HDA14 | At4g33470 | 4.709 | 1.029 | unclassified RPD3 type histone deacetylase protein with similarity to acetylpolyamine aminohydrolase (aphA) proteins of Archae.
HDA17 | At3g44490 | 0.551 | 1.026 | a partial gene fragment that appears to be a duplication of [NAME], a class I RPD3 type histone deacetylase protein
HDA18 | At5g61070 | 0.561 | 1.323 | Class II RPD3 type histone deacetylase protein
HDA19 | At4g38130 | 0.516 | 1.225 | Class I RPD3 type histone deacetylase protein
HDA6 | At5g63110 | 0.59 | 1.081 | Class I RPD3 type histone deacetylase protein
HDA8 | At1g08460 | 0.681 | 1.053 | Unclassified RPD3 type histone deacetylase protein with similarity to acetylpolyamine aminohydrolase (aphA) proteins of Archae.
HDA9 | At3g44680 | 0.536 | 1.152 | Class I RPD3 type histone deacetylase protein
HDT1 | At3g44750 | 0.507 | 3.485 | plant specific HD2 type histone deacetylase
HDT2 | At5g22650 | 0.41 | 4.262 | plant specific HD2 type histone deacetylase
HDT3 | At5g03740 | 0.459 | 1.006 | plant specific HD2 type histone deacetylase
HFO4 | At1g07820 | 1.008 | 1.222 | histone H4
HFO5 | At3g53730 | 0.979 | 1.609 | histone H4
[NAME] | At3g45930 | 1.037 | 2.454 | histone H4
[NAME] | At1g14900 | 2.913 | 1.037 | HMGA protein containing a linker histone and multiple AT hook domains.
HMGB1 | [NAME] | 2.422 | 0.952 | single HMG domain chromatin-associated protein designated as HMGB1
HMGB12 | At5g23405 | 0.367 | 0.994 | single HMG domain chromatin protein
HMGB15 | At1g04880 | 0.556 | 1.836 | In progress
HMGB2 | At1g20693 | 2.465 | 1.003 | single HMG domain chromatin-associated protein designated as HMGB2
HMGB3 | [NAME] | 1.549 | 0.948 | single HMG domain chromatin-associated protein designated as HMGB3
HMGB5 | At4g35570 | 1.004 | 1.491 | single HMG domain chromatin-associated protein designated as HMGB5
HMGB6 | At4g23800 | 0.999 | 3.713 | triple HMG domain chromatin-associated protein designated as HMGB6
HMGB7 | At5g23420 | 1.008 | 2.684 | single HMG domain chromatin protein
HMGB9 | At1g76110 | 3.664 | 1.021 | single HMG domain chromatin-associated protein; contains an ARID/BRIGHT DNA binding domain
HON1 | At1g06760 | 0.873 | 1.384 | linker histone protein within the Histone H1 homology group.
HON3 | At2g18050 | 6.86 | 0.0732 | linker histone protein within the Histone H1 homology group.
[NAME] | At5g54640 | 0.949 | 3.129 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA10 | At1g51060 | 0.991 | 3.642 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA11 | At3g54560 | 0.996 | 2.105 | Histone variant H2AZ
HTA13 | At3g20670 | 0.999 | 3.035 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA2 | At4g27230 | 1.004 | 3.423 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA3 | At1g54690 | 0.999 | 4.8 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA5 | At1g08880 | 1.123 | 1.002 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA6 | At5g59870 | 1.002 | 1.569 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA7 | At5g27670 | 0.984 | 1.523 | Histone H2A, core histone required for chromatin assembly and chromosome function
HTA9 | At1g52740 | 1.015 | 0.482 | Histone variant H2AZ
HTB1 | At1g07790 | 0.874 | 2.82 | histone H2B
HTB10 | At5g02570 | 0.832 | 5.441 | histone H2B
HTB11 | At3g46030 | 0.721 | 1.735 | histone H2B
[NAME] | At5g22880 | 1.015 | 5.061 | histone H2B
HTB3 | At2g28720 | 3.262 | 0.955 | histone H2B
[NAME] | At5g59910 | 0.981 | 1.242 | histone H2B
HTB6 | At3g53650 | 0.367 | 7.959 | histone H2B
HTB7 | At3g09480 | 0.0853 | 1.144 | histone H2B
HTB9 | At3g45980 | 1.003 | 1.216 | histone H2B
HTR1 | At5g65360 | 1 | 5.008 | histone H3
HTR11 | At5g65350 | 0.837 | 1.542 | histone H3
HTR12 | At1g01370 | 0.938 | 3.663 | Centromeric histone H3;a probable ortholog of the centromere specific histone CENP-A
HTR13 | At5g10390 | 1.081 | 2.674 | histone H3
HTR15 | At5g12910 | 0.658 | 0.964 | In progress
HTR2 | At1g09200 | 0.959 | 2.094 | histone H3
HTR3 | At3g27360 | 1.018 | 1.68 | histone H3
HTR5 | At4g40040 | 0.637 | 1.158 | histone H3
HTR6 | At1g13370 | 0.568 | 1.638 | histone H3
HTR8 | At5g10980 | 0.649 | 1.022 | histone H3
HTR9 | At5g10400 | 0.998 | 2.405 | histone H3
HUPA1 | At2g44950 | 0.992 | 0.733 | In progress
HUPB1 | At1g14400 | 1.006 | 0.819 | In progress
[NAME] | At4g16420 | 1.009 | 0.377 | homologous to yeast ADA2, a transcriptional adaptor protein that is part of the ADA and SAGA complexes
JMJ22 | At5g06550 | 0.623 | 2.162 | In progress
[NAME] | At1g09060 | 1.017 | 0.617 | In progress
JMJ30 | At3g20810 | 0.856 | 3.862 | In progress
MBD10 | At1g15340 | 1.058 | 0.302 | protein containing a putative methyl-CpG-binding domain
MBD2 | At5g35330 | 1.455 | 0.982 | protein containing a putative methyl-CpG-binding domain
[NAME] | At4g37280 | 1.315 | 0.954 | In progress
MRG2 | At1g02740 | 0.939 | 1.646 | Some members of the MRG family are thought to be involved in transcriptional regulation via histone acetylation
NFA1 | At4g26110 | 0.662 | 1.173 | Nucleosome assembly protein; homolog of Saccharomyces cerevisiae NAP1, a protein involved in the transport of H2A and H2B histones to the nucleus
NFA6 | At1g74560 | 1.352 | 0.904 | A nucleosome assembly-like protein with more similarity to Homo sapiens TSPY, TSPLY and SET translocation (myeloid leukemia-associated)proteins than Saccharomyces cerevisiae NAP1
NFC1 | At5g58230 | 0.462 | 1.031 | Member of the nucleosome/chromatin assembly factor group C (RBBP4 and [NAME] homologs); highly similar to human RbAp46 and RbAp48 (Retinoblastoma associated proteins) - a WD-40 domain containing protein found in several chromatin regulatory complexes
[NAME] | At2g16780 | 0.999 | 3.697 | a member of the nucleosome/chromatin assembly factor group C (RBBP4 and [NAME] homologs); highly similar to human RbAp46 and RbAp48 (Retinoblastoma associated proteins) - a WD-40 domain containing protein found in several chromatin regulatory complexes
[NAME] | At4g35050 | 0.263 | 2.548 | a member of the nucleosome/chromatin assembly factor group C (RBBP4 and [NAME] homologs); highly similar to human RbAp46 and RbAp48 (Retinoblastoma associated proteins) - a WD-40 domain containing protein found in several chromatin regulatory complexes
NFC4 | At2g19520 | 0.934 | 1.902 | Flowering locus gene involved in the autonomous flowering pathway. Mutations in FVE cause a delay in flowering time and increased levels of FLC transcript.
NRPDA1 | At1g63020 | 0.325 | 6.056 | One of two large subunits of a plant-specific RNA polymerase IV required for posttranscriptional gene silencing.
NRPDB2 | At3g18090 | 0.928 | 3.214 | In progress
PAFA1 | At1g79730 | 0.646 | 0.969 | In progress
PAFD1 | At1g61040 | 0.469 | 1.05 | In progress
PAFE1 | At3g22590 | 0.535 | 2.173 | In progress
PATPA1 | At5g43010 | 0.593 | 3.228 | In progress
PATPA2 | At1g45000 | 0.811 | 2.365 | In progress
PATPB2 | At5g20000 | 0.478 | 1.739 | In progress
PGE1 | At3g20740 | 0.847 | 1.53 | [NAME] group; encodes protein related to the Drosophila PcG protein ESC. FIE is required for proper regulation of endosperm development.
PRMT11 | At4g29510 | 0.734 | 1.97 | Protein arginine N-methyltransferase, ChromDB Class I; orthologous to human PRMT1
PRMT13 | At3g06930 | 0.363 | 1.2 | Protein arginine N-methyltransferase, ChromDB Class II; orthologous to human CARM1 (PRMT4)
PRMT14 | At5g49020 | 0.912 | 2.233 | Protein arginine N-methyltransferase, ChromDB Class II; orthologous to human CARM1 (PRMT4)
PRMT15 | At4g31120 | 0.995 | 2.699 | Protein arginine N-methyltransferase, ChromDB Class IV; orthologous to human PRMT5
[NAME] | At1g14790 | 0.885 | 1.898 | RNA-dependent [NAME] polymerase involved in posttranscriptional gene silencing.
RDR2 | At4g11130 | 0.778 | 1.926 | an RNA-dependent RNA polymerases involved in posttranscriptional gene silencing.
RUVBL1 | At5g22330 | 0.584 | 6.934 | In progress
RUVBL2 | At5g67630 | 0.448 | 1.027 | In progress
SDG10 | At4g02020 | 0.282 | 2.116 | At4g02020At1g77300; SET domain proteins; Homology Subgroup I; Orthology Group 3 - A putative histone methyltransferase (predicted to methylate [NAME]) related to the [NAME] group gene Enhancer of zeste.
SDG19 | At1g73100 | 0.83 | 1.579 | SET domain proteins; Homology Subgroup V; Orthology Group 1; a putative histone methyltransferase (predicted to methylate H3K9/20) related to the Drosophila Su(var)3-9 and mammalian G9a proteins .
SDG21 | At2g24740 | 0.47 | 1.391 | SET domain proteins; Homology Subgroup V; Orthology Group 1; a putative histone methyltransferase (predicted to methylate H3K9/20) related to the Drosophila Su(var)3-9 and mammalian G9a proteins .
SDG23 | At2g22740 | 1.707 | 0.984 | SET domain proteins; Homology Subgroup V; Orthology Group 2; a putative histone methyltransferase (predicted to methylate H3K9/20) related to the Drosophila Su(var)3-9 and mammalian G9a proteins.
SDG32 | At5g04940 | 0.97 | 1.724 | SET domain proteins; Homology Subgroup V; Orthology Group 1;a putative histone methyltransferase (predicted to methylate H3K9/20) related to the Drosophila Su(var)3-9 and mammalian G9a proteins .
SDG33 | At5g13960 | 0.459 | 1.523 | A histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation; related to the Drosophila Su(var)3-9 and mammalian G9a proteins.
SDG34 | At5g24330 | 0.865 | 1.861 | SET domain proteins; Homology Subgroup IV; Orthology Group 1; related to the yeast genes SET3 and SET4.
SDG40 | At5g17240 | 0.759 | 2.338 | In progress
SDG7 | At2g44150 | 2.183 | 0.595 | SET domain proteins; Homology Subgroup II; Orthology Group 1; a putative histone methyltransferase related to the Drosophila trithorax group gene ASH1 and the yeast gene SET2.
SGA1 | At5g38110 | 0.791 | 1.418 | Silencing Group A;homologous to yeast ASF1 (anti-silencing factor)
SGA2 | At1g66740 | 0.557 | 1.03 | Silencing Group A;homologous to yeast ASF1 (anti-silencing factor)
SMH11 | At5g67580 | 0.949 | 0.565 | Single myb histone gene containing an N-terminal MYB-like domain, an internal globular linker histone (H1/H5) domain, and a C-terminal coiled coil domain.
SMH13 | At1g17520 | 1.001 | 0.522 | Single myb histone gene containing an N-terminal MYB-like domain, an internal globular linker histone (H1/H5) domain, and a C-terminal coiled coil domain.
SMH14 | At3g49850 | 0.978 | 1.657 | Single myb histone gene containing an N-terminal MYB-like domain, an internal globular linker histone (H1/H5) domain, and a C-terminal coiled coil domain.
SMH15 | At1g54260 | 1.003 | 0.758 | linker_histone domain containing-protein with more similarity in the domain to the SMH protein group than the HON protein group.
SWDB1 | At5g14530 | 0.483 | 1.11 | In progress
SWDC1 | At4g02730 | 0.502 | 2.703 | In progress
TAFV1 | At5g25150 | 0.569 | 3.042 | TATA binding protein associated factor 5
VEF1 | At4g16845 | 0.997 | 0.572 | VEF Homology Group; [NAME] (VRN2)