Spreadsheet: 2fe369b9-5bec-46a0-b228-be424bad3aae
Sheet: Sheet1

Unnamed: 0 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12
Seq ID | Genomic context | Regulation(LncRNA) | Regulation(mRNA) | Correlation | Chromosome | ChromosomeStrand | txStart | txEnd | Associated_gene_acc | Associated_gene_symbol | Associated_gene_full name | [NAME] (GO)
AK009920 | intronic sense | down | down | positive | chr1 | - | 38611129 | 38613222 | NM_010678 | Aff3 | AF4/FMR2 family, member 3 | Transcription, DNA-dependent
AK084200 | intergenic | up |  |  | chr15 | - | 96062300 | 96085115 | NM_175251 | Arid2 | AT rich interactive domain 2 (ARID, RFX-like) | Positive regulation of transcription from RNA polymerase II promoter
AK039302 | intronic sense | down | down | positive | chr13 | + | 14140980 | 14160778 | NM_194262 | Arid4b | AT rich interactive domain 4B (RBP1-like) | Transcription regulation
BC048582 | intergenic | up | down | negtive | chr1 | + | 36389553 | 36390265 | NM_145996 | Arid5a | AT rich interactive domain 5A (MRF1-like) | Transcription regulation
AK017104 | exonic antisense | up |  |  | chr4 | + | 63042391 | 63055052 | NM_001045514 | Akna | AT-hook transcription factor | Transcription regulation
AK019722 | exonic antisense | up |  |  | chr11 | - | 24066876 | 24072824 | NM_001159289 | Bcl11a | B cell CLL/lymphoma 11A (zinc finger protein) | Transcription regulation
AK007234 | intergenic | up | down | negtive | chr12 | - | 107680862 | 107685873 | NM_001079883 | Bcl11b | B cell leukemia/lymphoma 11B | RNA polymerase II core promoter proximal region sequence-specific DNA binding
AK012089 | intronic sense | down | down | positive | chrX | - | 11659671 | 11660237 | [NAME] | Bcor | BCL6 interacting corepressor | Transcription, DNA-dependent
AK087211 | intergenic | down |  |  | chr12 | - | 114193759 | 114196609 | NM_028193 | Brf1 | [NAME] homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae) | DNA-dependent transcription, initiation;positive regulation of transcription, DNA-dependent
AK015287 | intergenic | up |  |  | chr5 | - | 106793579 | 106795868 | NM_001005477 | Barhl2 | BarH-like 2 (Drosophila) | Positive regulation of translation
AK145034 | intergenic | up |  |  | chr2 | - | 18609149 | 18611941 | [NAME] | Bmi1 | Bmi1 polycomb ring finger oncogene | Negative regulation of transcription from RNA polymerase II promoter;Transcription, DNA-dependent
AK016552 | intronic antisense | up |  |  | chr7 | + | 140195908 | 140198507 | NM_009980 | Ctbp2 | C-terminal binding protein 2 | Negative regulation of transcription, DNA-dependent;transcription, DNA-dependent
AK019828 | intergenic | up |  |  | chr10 | + | 116039847 | 116040350 | NM_028082 | Cnot2 | CCR4-NOT transcription complex, subunit 2 | regulation of transcription, DNA-dependent;transcription, DNA-dependent
AK031165 | exonic sense | down | down | positive | chr7 | + | 3596869 | 3601182 | NM_146176 | Cnot3 | CCR4-NOT transcription complex, subunit 3 | regulation of transcription, DNA-dependent;transcription, DNA-dependent
AK005958 | intergenic | up |  |  | chr16 | - | 4219911 | 4228058 | NM_001025432 | Crebbp | CREB binding protein | positive regulation of transcription from RNA polymerase II promoter;transcription, DNA-dependent
AK136184 | intergenic | up | down | negtive | chr10 | - | 16670900 | 16675819 | NM_010828 | Cited2 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 | positive regulation of transcription, DNA-dependent;transcription, DNA-dependent
BC051525 | intergenic | up |  |  | chr4 | + | 120288442 | 120295287 | NM_019563 | Cited4 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4 | positive regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK036130 | exonic antisense | down |  |  | chr12 | + | 84827084 | 84829972 | NM_058212 | Dpf3 | D4, zinc and double PHD fingers, family 3 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK016899 | intergenic | up |  |  | chr4 | + | 107460453 | 107462526 | NM_019872 | Dmrtb1 | DMRT-like family B with proline-rich C-terminal, 1 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK076721 | exonic antisense | up | up | positive | chr5 | - | 30061907 | 30062476 | NM_001037941 | Dnajb6 | DnaJ (Hsp40) homolog, subfamily B, member 6 | negative regulation of transcription, DNA-dependent
AK076938 | intergenic | up |  |  | chr10 | - | 110238229 | 110333606 | NM_178609 | E2f7 | E2F transcription factor 7 | transcription, DNA-dependent
AK158295 | bidirectional | up |  |  | chr7 | + | 56136669 | 56141978 | NM_001013368 | E2f8 | E2F transcription factor 8 | transcription, DNA-dependent
AK017046 | intronic antisense | up | up | positive | chr15 | + | 83885637 | 83887021 | NM_029946 | Efcab6 | EF-hand calcium binding domain 6 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK085973 | intergenic | down |  |  | chr7 | - | 19926316 | 19927864 | NM_008036 | Fosb | FBJ osteosarcoma oncogene B | sequence-specific DNA binding transcription factor activity
AK136742 | intergenic | down |  |  | chr17 | - | 34045127 | 34046123 | NM_007829 | Daxx | Fas death domain-associated protein | Negative regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK016124 | intergenic | up |  |  | chr6 | - | 23130481 | 23131489 | NM_028462 | Fezf1 | [NAME] family zinc finger 1 | positive regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK006852 | intergenic | up |  |  | chr2 | + | 9111141 | 9119104 | NM_008091 | Gata3 | GATA binding protein 3 | RNA polymerase II core promoter sequence-specific DNA binding
AK031341 | exonic sense | down | down | positive | chr14 | - | 63860808 | 63864096 | NM_008092 | Gata4 | GATA binding protein 4 | RNA polymerase II transcription factor binding transcription factor activity
AK047045 | intergenic | down | down | positive | chr18 | + | 10812907 | 10816766 | NM_010258 | Gata6 | GATA binding protein 6 | negative regulation of transcription from RNA polymerase II promoter
AK015985 | intergenic | up | up | positive | chr3 | - | 90096222 | 90097905 | NM_139304 | Gatad2b | GATA zinc finger domain containing 2B | transcription, DNA-dependent
AK137112 | intergenic | down | down | positive | chr13 | - | 15551818 | 15553128 | NM_008130 | Gli3 | GLI-Kruppel family member [NAME] | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK019761 | intronic antisense | up | down | negtive | chr4 | - | 107269390 | 107269831 | NM_147221 | Glis1 | GLIS family zinc finger 1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK021285 | bidirectional | down | down | positive | chr16 | - | 4592921 | 4594230 | NM_031184 | Glis2 | GLIS family zinc finger 2 | negative regulation of transcription from RNA polymerase II promoter
AK052617 | intronic sense | down | down | positive | chr19 | - | 28591848 | 28594190 | NM_175459 | [NAME] | GLIS family zinc finger 3 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK015643 | intergenic | up | down | negtive | chr1 | + | 186536375 | 186542868 | NM_008250 | Hlx | H2.0-like homeobox | transcription, DNA-dependent
AK016658 | intergenic | up | up | positive | chr5 | + | 35704201 | 35710326 | NM_010445 | Hmx1 | H6 homeobox 1 | Negative regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK028520 | exonic antisense | down |  |  | chr7 | + | 138532702 | 138536280 | NM_175115 | Ikzf5 | [NAME] family zinc finger 5 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK020950 | intergenic | down | down | positive | chr13 | - | 117640101 | 117641035 | NM_021459 | Isl1 | ISL1 transcription factor, LIM/homeodomain | RNA polymerase II transcription coactivator activity
AK007185 | intergenic | up | down | negtive | chr13 | + | 71625053 | 71750157 | NM_010573 | Irx1 | Iroquois related homeobox 1 (Drosophila) | sequence-specific DNA binding transcription factor activity
AK016132 | intergenic | up |  |  | chr13 | - | 73343540 | 73366548 | NM_018885 | Irx4 | Iroquois related homeobox 4 (Drosophila) | regulation of transcription from RNA polymerase II promoter
AK016095 | intergenic | up | down | negtive | chr4 | - | 94755773 | 94758110 | NM_010591 | Jun | Jun oncogene | negative regulation of transcription, DNA-dependent; positive regulation of transcription from RNA polymerase II promoter
AK016287 | intergenic | up | up | positive | chr15 | - | 69064360 | 69065429 | NM_010158 | Khdrbs3 | KH domain containing, RNA binding, signal transduction associated 3 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK086739 | intergenic | up | down | negtive | chr14 | + | 99921763 | 99976121 | NM_010636 | Klf12 | Kruppel-like factor 12 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
BC052788 | exonic antisense | down | down | positive | chr7 | + | 71031248 | 71032531 | NM_021366 | [NAME] | Kruppel-like factor 13 | positive regulation of transcription from RNA polymerase II promoter;transcription from RNA polymerase II promoter
AK006413 | intergenic | up |  |  | chr5 | - | 64846051 | 64859181 | NM_008453 | Klf3 | Kruppel-like factor 3 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AY512912 | intergenic | up |  |  | chr4 | + | 55576136 | 55612168 | NM_010637 | Klf4 | Kruppel-like factor 4 | positive regulation of transcription from RNA polymerase II promoter
AK012473 | intergenic | down |  |  | chr14 | - | 100265401 | 100266079 | NM_009769 | Klf5 | Kruppel-like factor 5 | positive regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK006031 | intergenic | up | down | negtive | chr13 | - | 5854754 | 5857338 | NM_011803 | Klf6 | Kruppel-like factor 6 | positive regulation of transcription from RNA polymerase II promoter
AK038520 | intergenic | down | down | positive | chr1 | - | 64076036 | 64079501 | NM_033563 | Klf7 | Kruppel-like factor 7 | positive regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK008366 | intronic sense | down | down | positive | chr2 | + | 68804807 | 68805679 | NM_172856 | [NAME] | LAG1 homolog, ceramide synthase 6 | sequence-specific DNA binding transcription factor activity
AK006783 | intergenic | up | down | negtive | chr6 | + | 112160701 | 112162507 | NM_144799 | Lmcd1 | LIM and cysteine-rich domains 1 | negative regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent
AK015845 | intergenic | up | down | negtive | chr3 | + | 142693577 | 142703714 | NM_010723 | Lmo4 | LIM domain only 4 | positive regulation of transcription from RNA polymerase II promoter
AK018946 | intergenic | up | up | positive | chr11 | - | 84530477 | 84533934 | NM_008498 | Lhx1 | LIM homeobox protein 1 | positive regulation of transcription, DNA-dependent
AK076949 | intergenic | up |  |  | chr5 | - | 120789516 | 120792568 | NM_008499 | Lhx5 | LIM homeobox protein 5 | transcription, DNA-dependent
AK014037 | intronic sense | down | down | positive | chr1 | - | 140725742 | 140727134 | NM_001042577 | Lhx9 | LIM homeobox protein 9 | negative regulation of transcription, DNA-dependent
AK006792 | intergenic | up | down | negtive | chr9 | - | 63886271 | 63889272 | NM_008542 | Smad6 | [NAME] family member 6 | transcription, DNA-dependent
AK006636 | exonic antisense | up |  |  | chr2 | - | 119722547 | 119724141 | NM_013720 | Mga | MAX gene associated | transcription, DNA-dependent
AK015615 | bidirectional | up | down | negtive | chr15 | + | 81021206 | 81023185 | NM_153049 | Mkl1 | MKL (megakaryoblastic leukemia)/myocardin-like 1 | transcription, DNA-dependent
AK131759 | intergenic | up | down | negtive | chr16 | - | 13463728 | 13468848 | NM_153588 | Mkl2 | MKL (megakaryoblastic leukemia)/myocardin-like 2 | positive regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent
AK007026 | exonic antisense | up |  |  | chr14 | + | 103745805 | 103759695 | NM_207215 | Mycbp2 | MYC binding protein 2 | regulation of transcription, DNA-dependent
AK005607 | intergenic | up | down | negtive | chr19 | - | 53323265 | 53329688 | NM_001008542 | Mxi1 | [NAME] interacting protein 1 | negative regulation of transcription from RNA polymerase II promoter
AK016692 | intergenic | up |  |  | chr11 | + | 18965277 | 18975743 | NM_010789 | [NAME] | Meis homeobox 1 | RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity
AB080658 | intergenic | up |  |  | chr2 | - | 147187278 | 147188529 | NM_010919 | Nkx2-2 | NK2 transcription factor related, locus 2 (Drosophila) | positive regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent
AK007038 | exonic antisense | up | up | positive | chr14 | - | 69782855 | 69789900 | NM_010920 | Nkx2-6 | NK2 transcription factor related, locus 6 (Drosophila) | transcription, DNA-dependent
AK019616 | intergenic | up | up | positive | chr5 | - | 101461569 | 101462271 | NM_144955 | Nkx6-1 | NK6 homeobox 1 | transcription, DNA-dependent
AK032615 | exonic sense | down | down | positive | chr1 | - | 52517762 | 52520534 | NM_008667 | Nab1 | Ngfi-A binding protein 1 | negative regulation of transcription, DNA-dependent; transcription, DNA-dependent
BC023886 | exonic antisense | up | down | negtive | chr2 | + | 26301474 | 26313515 | NM_008714 | Notch1 | notch 1 | negative regulation of transcription from RNA polymerase II promoter
AK007900 | bidirectional | up | up | positive | chr19 | + | 5561051 | 5561679 | NM_019935 | Ovol1 | OVO homolog-like 1 (Drosophila) | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
AK053153 | exonic antisense | down | up | negtive | chr4 | + | 83109195 | 83111697 | NM_133948 | Psip1 | PC4 and SFRS1 interacting protein 1 | Transcription regulation
AK019103 | intergenic | down | down | positive | chr3 | - | 41326125 | 41332396 | NM_001130184 | Phf17 | PHD finger protein 17 | Transcription regulation
AK085172 | exonic sense | down | down | positive | chr2 | + | 156096817 | 156099086 | NM_172674 | Phf20 | PHD finger protein 20 | Transcription regulation
AK039132 | intergenic | down |  |  | chr2 | + | 91898875 | 91902320 | NM_001109690 | Phf21a | PHD finger protein 21A | transcription, DNA-dependent
AK040512 | exonic antisense | up |  |  | chr1 | + | 167802183 | 167805411 | NM_011137 | Pou2f1 | POU domain, class 2, transcription factor 1 | RNA polymerase II transcription coactivator activity
AK080501 | intergenic | up | up | positive | chr7 | - | 25872370 | 25873561 | NM_011138 | Pou2f2 | POU domain, class 2, transcription factor 2 | positive regulation of transcription, DNA-dependent
AK018866 | intergenic | up | down | negtive | chr4 | - | 124127481 | 124128531 | NM_011141 | [NAME] | POU domain, class 3, transcription factor 1 | RNA polymerase II transcription coactivator activity
AK015419 | intergenic | up |  |  | chr1 | - | 41224404 | 41238097 | NM_008900 | Pou3f3 | POU domain, class 3, transcription factor 3 | positive regulation of transcription from RNA polymerase II promoter
AK006476 | intergenic | up |  | n | chr14 | + | 104298710 | 104299169 | NM_011143 | Pou4f1 | POU domain, class 4, transcription factor 1 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
AK077955 | intronic sense | down | down | positive | chr11 | + | 3201788 | 3204468 | [NAME] | Patz1 | POZ (BTB) and AT hook containing zinc finger 1 | negative regulation of transcription, DNA-dependent; positive regulation of transcription, DNA-dependent
AK015266 | intergenic | up | down | negtive | chr10 | - | 44450574 | 44458706 | NM_007548 | Prdm1 | PR domain containing 1, with ZNF domain | regulation of transcription, DNA-dependent
AK083203 | bidirectional | down | down | positive | chr4 | + | 154011684 | 154018825 | NM_027504 | Prdm16 | PR domain containing 16 | positive regulation of transcription, DNA-dependent
AK007008 | intergenic | up |  |  | chr4 | - | 141811577 | 141811991 | NM_001081355 | Prdm2 | PR domain containing 2 | regulation of transcription, DNA-dependent
AK053030 | intronic sense | down | up | negtive | chr9 | - | 36950568 | 36953400 | NM_001029838 | Pknox2 | Pbx/knotted 1 homeobox 2 | regulation of transcription from RNA polymerase II promoter
AK015674 | intergenic | up | up | positive | chr9 | - | 68318708 | 68368007 | NM_013646 | Rora | RAR-related orphan receptor alpha | positive regulation of transcription from RNA polymerase II promoter
AK161112 | bidirectional | down |  |  | chr1 | - | 6199948 | 6204661 | NM_009826 | Rb1cc1 | RB1-inducible coiled-coil 1 (Rb1cc1) | regulation of transcription, DNA-dependent
AK219183 | intergenic | up | up | positive | chr1 | + | 193922736 | 193923016 | NM_144814 | Rcor3 | REST corepressor 3 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK076358 | exonic antisense | up |  |  | chr7 | + | 28712742 | 28716022 | NM_028538 | 1700049G17Rik | RIKEN cDNA 1700049G17 gene | nucleic acid binding
AK029496 | exonic antisense | up | down | negtive | chr16 | + | 91013965 | 91016988 | NM_026110 | Gcfc1 | GC-rich sequence DNA-binding factor 1 | sequence-specific DNA binding transcription factor activity
AK008245 | intergenic | down | down | positive | chr12 | - | 85238417 | 85239170 | NM_023633 | 2410016O06Rik | RIKEN cDNA 2410016O06 gene | negative regulation of transcription, DNA-dependent
AK049261 | exonic sense | down |  |  | chr2 | - | 177803180 | 177813160 | [NAME] | Zfp931 | zinc finger protein 931 | regulation of transcription, DNA-dependent
AK043991 | intergenic | up |  |  | chr12 | + | 50491645 | 50508140 | NM_008241 | Foxg1 | forkhead box G1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK015297 | exonic sense | up |  |  | chr17 | + | 22099552 | 22208135 | NM_001025373 | Zfp943 | zinc finger protein 943 | regulation of transcription, DNA-dependent
AK078603 | intergenic | up |  |  | chr9 | - | 20347813 | 20349873 | NM_001082485 | Zfp266 | zinc finger protein 266 | regulation of transcription, DNA-dependent
AK088428 | exonic antisense | up | down | negtive | chr2 | + | 38921134 | 38921886 | NM_178778 | Scai | suppressor of cancer cell invasion | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK016932 | intergenic | up |  |  | chr10 | - | 81778119 | 81779304 | NM_001105557 | Zfp938 | zinc finger protein 938 | regulation of transcription, DNA-dependent
AK005833 | intergenic | up |  |  | chr14 | - | 25425925 | 25436533 | NM_183208 | Zmiz1 | zinc finger, MIZ-type containing 1 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK020850 | bidirectional | up | down | negtive | chr2 | + | 156006312 | 156006849 | NM_133242 | Rbm39 | RNA binding motif protein 39 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK007154 | exonic antisense | up |  |  | chr15 | + | 76914827 | 76926744 | NM_053104 | [NAME] | RNA binding protein, fox-1 homolog (C. elegans) 2 | negative regulation of transcription, DNA-dependent
AK037895 | exonic sense | down | down | positive | chr3 | - | 51352604 | 51355242 | NM_080793 | Setd7 | SET domain containing (lysine methyltransferase) 7 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
BC049745 | intergenic | up |  |  | chr3 | - | 95190379 | 95206763 | NM_001163642 | Setdb1 | SET domain, bifurcated 1 | DNA binding
AK019859 | intergenic | up | up | positive | chr8 | + | 12502898 | 12505340 | NM_009233 | Sox1 | SRY-box containing gene 1 | core promoter sequence-specific DNA binding
AK006151 | intergenic | up |  |  | chr12 | - | 27256972 | 27287174 | NM_009234 | Sox11 | SRY-box containing gene 11 | negative regulation of transcription from RNA polymerase II promoter; negative regulation of transcription regulatory region DNA binding
AK016008 | intergenic | up | up | positive | chr9 | - | 100073419 | 100074565 | NM_011440 | Sox14 | SRY-box containing gene 14 | negative regulation of transcription from RNA polymerase II promoter;transcription, DNA-dependent
AK020728 | intergenic | down |  |  | chr13 | + | 29108161 | 29120666 | NM_009238 | Sox4 | SRY-box containing gene 4 | positive regulation of translation
AK031826 | intergenic | up | down | negtive | chr3 | + | 34564164 | 34576917 | NM_011443 | Sox2 | SRY-box containing gene 2 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription from RNA polymerase II promoter
AY512909 | intergenic | down | down | positive | chrX | + | 57736773 | 58061168 | NM_009237 | Sox3 | SRY-box containing gene 3 | DNA binding
AK160417 | exonic antisense | up | up | positive | chr6 | + | 143970465 | 143972174 | NM_001113559 | Sox5 | SRY-box containing gene 5 | negative regulation of transcription, DNA-dependent; positive regulation of transcription from RNA polymerase II promoter
AK005637 | intergenic | up | down | negtive | chr7 | - | 123225293 | 123232697 | NM_001025560 | Sox6 | SRY-box containing gene 6 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
BC006965 | intergenic | down | down | positive | chr11 | - | 112548956 | 112572655 | NM_011448 | Sox9 | SRY-box containing gene 9 | negative regulation of transcription, DNA-dependent
AK076909 | intronic antisense | up |  |  | chr19 | - | 26695241 | 26697900 | NM_026003 | Smarca2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 | positive regulation of transcription from RNA polymerase II promoter
AK048140 | exonic antisense | down |  |  | chr10 | + | 75383956 | 75385286 | NM_011418 | Smarcb1 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 | regulation of transcription, DNA-dependent;transcription, DNA-dependent
AK163775 | intronic sense | down |  |  | chr10 | + | 127912120 | 127914536 | NM_198160 | Smarcc2 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 2 | negative regulation of transcription, DNA-dependent;positive regulation of transcription, DNA-dependent
NR_003953 | intergenic | up | down | negtive | chr5 | + | 24151270 | 24154678 | NM_025891 | Smarcd3 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3 | positive regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK018913 | exonic antisense | up |  |  | chr14 | - | 31583866 | 31591190 | NM_019460 | Sfmbt1 | Scm-like with four mbt domains 1 | regulation of transcription, DNA-dependent
AK076808 | intergenic | up | up | positive | chr1 | + | 166891051 | 166892955 | NM_032005 | Tbx19 | T-box 19 | positive regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent
AK015127 | intergenic | up | down | negtive | chr5 | + | 119402347 | 119411270 | [NAME] | Tbx3 | T-box 3 | negative regulation of transcription, DNA-dependent; positive regulation of transcription, DNA-dependent
AK006202 | intergenic | up |  |  | chr5 | - | 120255337 | 120257878 | NM_011537 | Tbx5 | T-box  5 | positive regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent
BC048519 | intergenic | up |  |  | chr15 | - | 54812887 | 54818418 | NM_001081288 | Taf2 | TAF2 RNA polymerase II, TATA box binding protein (TBP)-associated factor | transcription factor TFIID complex
AK033633 | exonic antisense | up |  |  | chr19 | - | 47140774 | 47142876 | NM_177342 | Taf5 | TAF5 RNA polymerase II, TATA box binding protein (TBP)-associated factor | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK132630 | intergenic | down |  |  | chr12 | + | 22811250 | 22888976 | NM_020614 | Taf1b | TATA box binding protein (Tbp)-associated factor, [NAME] polymerase I, B | [NAME] polymerase I transcription factor complex;
AK048761 | intronic sense | down |  |  | chr7 | + | 119953226 | 119956349 | NM_009346 | [NAME] | TEA domain family member 1 | positive regulation of transcription from RNA polymerase II promoter
AK039686 | intergenic | up |  |  | chr6 | - | 128137835 | 128150641 | NM_011567 | Tead4 | TEA domain family member 4 | positive regulation of transcription from RNA polymerase II promoter
AK011460 | intergenic | down | down | positive | chr17 | + | 24665195 | 24665688 | NM_153792 | Traf7 | TNF receptor-associated factor 7 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK017083 | intergenic | up | up | positive | chr3 | - | 57945628 | 57967729 | NM_001081229 | Tsc22d2 | TSC22 domain family, member 2 | sequence-specific DNA binding transcription factor activity
AK030494 | intronic sense | down | down | positive | chrX | - | 137121841 | 137123985 | NM_010286 | Tsc22d3 | TSC22 domain family, member 3 | negative regulation of transcription from RNA polymerase II promoter
AK013706 | intergenic | down | down | positive | chrX | - | 148749758 | 148750260 | NM_029836 | Tspyl2 | TSPY-like 2 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK019708 | intergenic | up |  |  | chr10 | - | 116626903 | 116627323 | NM_026570 | Yeats4 | YEATS domain containing 4 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK165766 | exonic sense | down |  |  | chr19 | - | 57191265 | 57193423 | NM_001103178 | Ablim1 | actin-binding LIM protein 1 | positive regulation of transcription from RNA polymerase II promoter
AK017951 | intronic sense | down | down | positive | chr15 | - | 102438048 | 102439215 | NM_146065 | Atf7 | activating transcription factor 7 | transcription, DNA-dependent
AK048598 | intergenic | down | down | positive | chr13 | - | 23519985 | 23522832 | NM_013924 | Abt1 | activator of basal transcription 1 | regulation of transcription from RNA polymerase II promoter
AK015101 | intergenic | up | up | positive | chr5 | - | 113749473 | 113750726 | NM_001012726 | Aym1 | activator of yeast meiotic promoters 1 | positive regulation of transcription from RNA polymerase II promoter
8430427H17Rik | intergenic | up | down | negtive | chr2 | - | 153285481 | 153318253 | NM_001039939 | Asxl1 | additional sex combs like 1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK082779 | exonic sense | down | down | positive | chrX | - | 103046775 | 103047406 | NM_009530 | Atrx | alpha thalassemia/mental retardation syndrome X-linked homolog (human) | DNA binding
AK087769 | intergenic | down |  |  | chrX | + | 95344107 | 95344738 | NM_013476 | Ar | androgen receptor | positive regulation of transcription from RNA polymerase III promoter
BC049745 | intergenic | up | down | negtive | chr3 | - | 95190379 | 95206763 | NM_001037737 | Arnt | aryl hydrocarbon receptor nuclear translocator | positive regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent
BC042407 | intergenic | up |  |  | chr7 | + | 120152627 | 120154405 | NM_007489 | Arntl | aryl hydrocarbon receptor nuclear translocator-like | RNA polymerase II transcription factor binding transcription factor activity involved in positive regulation of transcription
AK015398 | intergenic | up |  |  | chr6 | - | 146794797 | 146795725 | NM_172309 | Arntl2 | aryl hydrocarbon receptor nuclear translocator-like 2 | negative regulation of transcription from RNA polymerase II promoter
AK086288 | intergenic | up | down | negtive | chr12 | + | 36287215 | 36379354 | NM_013464 | Ahr | aryl-hydrocarbon receptor | negative regulation of transcription from RNA polymerase II promoter
AK015450 | intronic antisense | up | down | negtive | chr13 | + | 46031408 | 46032273 | NM_009124 | Atxn1 | ataxin 1 | positive regulation of transcription from RNA polymerase II promoter
uc009ers | intergenic | down |  |  | chr6 | + | 145768009 | 145769599 | NM_024469 | Bhlhe41 | basic helix-loop-helix family, member e41 | negative regulation of transcription by competitive promoter binding
AK031039 | exonic sense | down | down | positive | chr4 | - | 84318072 | 84320977 | NM_172870 | Bnc2 | [NAME] | Transcription regulation
AK076728 | intergenic | up |  |  | chr16 | + | 49955942 | 49959025 | NM_027444 | Bbx | [NAME] homolog (Drosophila) | regulation of transcription, DNA-dependent
AK006845 | intergenic | up | down | negtive | chr2 | + | 172688060 | 172688623 | NM_007557 | Bmp7 | bone morphogenetic protein 7 | negative regulation of transcription, DNA-dependent;positive regulation of transcription from RNA polymerase II promoter
AK039132 | intergenic | down |  |  | chr2 | + | 91898875 | 91902320 | NM_011957 | Creb3l1 | cAMP responsive element binding protein 3-like 1 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
BC006792 | intergenic | down |  | n/A | chr6 | - | 37277254 | 37279696 | NM_178661 | Creb3l2 | cAMP responsive element binding protein 3-like 2 | positive regulation of transcription, DNA-dependent
AK043982 | intergenic | up | down | negtive | chr15 | + | 102627925 | 102649975 | NM_026192 | Calcoco1 | calcium binding and coiled coil domain 1 | positive regulation of transcription from RNA polymerase II promoter
AK015242 | intronic antisense | up | down | negtive | chr4 | + | 150931465 | 150932630 | NM_001081557 | Camta1 | [NAME] transcription activator 1 | regulation of transcription, DNA-dependent
AK019838 | intergenic | up | down | negtive | chr9 | - | 120833572 | 120839920 | NM_007614 | Ctnnb1 | catenin (cadherin associated protein), beta 1 (Ctnnb1) | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK015252 | intergenic | up | up | positive | chr15 | + | 30968882 | 30973086 | NM_008729 | Ctnnd2 | catenin (cadherin associated protein), delta 2 (Ctnnd2) | regulation of transcription, DNA-dependent; transcription, DNA-dependent
BC106196 | exonic antisense | down | down | positive | chr4 | - | 148938630 | 148941906 | NM_023465 | Ctnnbip1 | catenin beta interacting protein 1 | negative regulation of transcription from RNA polymerase II promoter
AK019889 | intergenic | up | down | negtive | chr2 | - | 72622737 | 72651774 | NM_025866 | Cdca7 | cell division cycle associated 7 | regulation of transcription, DNA-dependent
AK149260 | intergenic | down | down | positive | chr11 | - | 118966445 | 118972739 | NM_007625 | Cbx4 | chromobox 4 | negative regulation of transcription from RNA polymerase II promoter
AK048353 | intergenic | down | down | positive | chr14 | - | 52874069 | 52877398 | NM_201637 | Chd8 | chromodomain helicase DNA binding protein 8 | positive regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent;positive regulation of transcription from RNA polymerase III promoter
AK142189 | intronic antisense | up |  |  | chr8 | - | 93430430 | 93432315 | NM_177224 | Chd9 | chromodomain helicase DNA binding protein 9 | regulation of transcription, DNA-dependent
AK015940 | intergenic | up | down | negtive | chr13 | - | 35259014 | 35259673 | NM_009881 | [NAME] | chromodomain protein, Y chromosome-like | regulation of transcription, DNA-dependent
AK020571 | exonic antisense | down | up | negtive | chr7 | - | 133792056 | 133793086 | NM_029339 | Ccdc101 | coiled-coil domain containing 101 | regulation of transcription, DNA-dependent
AK015773 | intergenic | up |  |  | chr10 | + | 118850499 | 118863920 | NM_027994 | Cand1 | cullin associated and neddylation disassociated 1 | positive regulation of transcription, DNA-dependent
AK080123 | intronic antisense | down |  |  | chr5 | + | 9155732 | 9158045 | NM_011806 | Dmtf1 | cyclin D binding myb-like transcription factor 1 | regulation of transcription, DNA-dependent
AK006130 | exonic antisense | up | down | negtive | chr9 | + | 119892263 | 119893909 | NM_153287 | Csrnp1 | cysteine-serine-rich nuclear protein 1 | positive regulation of transcription from RNA polymerase II promoter
AK013501 | intergenic | up | up | positive | chr6 | - | 6809854 | 6810384 | NM_010057 | [NAME] | distal-less homeobox 6 | transcription regulatory region sequence-specific DNA binding
AK019375 | intergenic | up |  |  | chr4 | - | 109649351 | 109650096 | NM_172296 | Dmrta2 | doublesex and mab-3 related transcription factor like family A2 | regulation of transcription, DNA-dependent
AK037105 | intronic sense | down |  |  | chrX | + | 81276053 | 81278717 | NM_007868 | Dmd | dystrophin, muscular dystrophy | regulation of transcription, DNA-dependent
AK012964 | exonic antisense | down | down | positive | chr11 | - | 44433208 | 44434151 | NM_007897 | Ebf1 | early B cell factor 1 | positive regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK015336 | intronic antisense | up |  |  | chr14 | - | 67950878 | 68016579 | NM_010095 | Ebf2 | early B cell factor 2 | positive regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK087769 | intergenic | down | down | positive | chrX | + | 95344107 | 95344738 | NM_001161433 | Eda2r | ectodysplasin A2 receptor | positive regulation of NF-kappaB transcription factor activity
AK006620 | bidirectional | up |  |  | chr13 | - | 75837609 | 75844620 | NM_138953 | Ell2 | elongation factor [NAME] polymerase II 2 | scription elongation from RNA polymerase II promoter;regulation of transcription, DNA-dependent
AK157435 | intergenic | up |  |  | chr7 | + | 97177669 | 97197579 | NM_021876 | [NAME] | [NAME] ectoderm development | regulation of transcription, DNA-dependent
AK012078 | intergenic | up |  |  | chr9 | - | 118311582 | 118312420 | NM_010136 | Eomes | eomesodermin homolog ([NAME] laevis) | positive regulation of transcription from RNA polymerase II promoter
AK019057 | exonic antisense | up |  |  | chr5 | - | 91480896 | 91503799 | NM_007950 | Ereg | [NAME] | negative regulation of transcription, DNA-dependent
AK033270 | exonic sense | down |  |  | chr10 | - | 5674656 | 5734545 | NM_007956 | Esr1 | estrogen receptor 1 (alpha) | negative regulation of sequence-specific DNA binding transcription factor activity; regulation of transcription from RNA polymerase II promoter
AK047643 | intronic sense | down | down | positive | chr12 | + | 39573237 | 39576076 | NM_007960 | Etv1 | ets variant gene 1 | positive regulation of transcription, DNA-dependent
AK032904 | intronic sense | down | down | positive | chr6 | + | 134137563 | 134141228 | NM_007961 | Etv6 | ets variant gene 6 | transcription, DNA-dependent
AK005792 | intergenic | up |  |  | chr6 | - | 81850457 | 81860794 | [NAME] | AW146020 | expressed sequence AW146020 | transcription, DNA-dependent
AK017913 | exonic sense | down |  |  | chr4 | + | 132195016 | 132196185 | NM_211357 | Eya3 | eyes absent 3 homolog (Drosophila) | regulation of transcription, DNA-dependent;transcription, DNA-dependent
AK005657 | intergenic | up | up | positive | chr13 | + | 119344960 | 119377511 | NM_008002 | Fgf10 | fibroblast growth factor 10 | positive regulation of transcription from RNA polymerase II promoter
AK048089 | intergenic | down |  |  | chr4 | + | 114581861 | 114593723 | NM_008593 | Foxd2 | forkhead box D2 | negative regulation of transcription from RNA polymerase II promoter
AK048089 | intergenic | down |  |  | chr4 | + | 114581861 | 114593723 | NM_015758 | Foxe3 | forkhead box E3 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK004221 | intergenic | down | down | positive | chr8 | - | 123582702 | 123584313 | NM_010426 | Foxf1 | forkhead box F1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK016091 | intergenic | up |  |  | chr13 | - | 31659265 | 31674382 | NM_010225 | Foxf2 | forkhead box F2 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK019737 | intergenic | up |  |  | chr7 | + | 142588017 | 142591227 | NM_183193 | Foxi2 | forkhead box I2 | negative regulation of transcription from RNA polymerase II promoter
AK007204 | intergenic | up | down | negtive | chr17 | - | 88695409 | 88704676 | NM_180974 | Foxn2 | forkhead box N2 | negative regulation of transcription from RNA polymerase II promoter
AK012244 | intronic sense | down | down | positive | chr12 | - | 100598080 | 100600238 | NM_183186 | Foxn3 | forkhead box N3 | negative regulation of transcription from RNA polymerase II promoter
AK037318 | intronic sense | down |  |  | chr6 | - | 99285729 | 99289118 | NM_053202 | Foxp1 | forkhead box P1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK035449 | intronic sense | up | down | negtive | chr6 | + | 15045412 | 15046836 | NM_053242 | Foxp2 | forkhead box [NAME] | negative regulation of transcription from RNA polymerase II promoter
AK083529 | intronic sense | down | down | positive | chr17 | - | 48038175 | 48041244 | NM_001110824 | Foxp4 | forkhead box P4 | negative regulation of transcription from RNA polymerase II promoter
AK015040 | intergenic | up | down | negtive | chr13 | - | 31305278 | 31332955 | NM_008239 | Foxq1 | forkhead box Q1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK035460 | intergenic | down | down | positive | chrX | + | 149472171 | 149507458 | NM_001034894 | Foxr2 | forkhead box R2 | negative regulation of transcription from RNA polymerase II promoter;
AK079777 | intergenic | down |  |  | chr7 | + | 135126592 | 135128401 | NM_139149 | Fus | fusion, derived from t(12;16) malignant liposarcoma (human) | DNA binding
AK018937 | bidirectional | up | up | positive | chr8 | - | 34841009 | 34842286 | NM_026584 | Gtf2e2 | general transcription factor II E, polypeptide 2 (beta subunit) | transcription initiation from RNA polymerase II promoter
AK076389 | exonic antisense | up |  |  | chr2 | + | 25146739 | 25154448 | NM_008169 | Grin1 | glutamate receptor, ionotropic, NMDA1 (zeta 1) | positive regulation of transcription from RNA polymerase II promoter
AK005410 | exonic antisense | down |  |  | chr15 | - | 37161675 | 37162896 | NM_026496 | Grhl2 | grainyhead-like 2 (Drosophila) | transcription, DNA-dependent
AK006510 | intergenic | up | down | negtive | chr4 | + | 135182685 | 135185353 | NM_001013756 | [NAME] | grainyhead-like 3 (Drosophila) | positive regulation of transcription from RNA polymerase II promoter
NR_026924 | intergenic | up | down | negtive | chr1 | - | 93301456 | 93302606 | NM_019479 | [NAME] | hairy and enhancer of split 6 (Drosophila) | regulation of transcription from RNA polymerase II promoter
AK030060 | intergenic | up |  |  | chr3 | + | 8743681 | 8746824 | NM_010423 | Hey1 | hairy/enhancer-of-split related with YRPW motif 1 | negative regulation of transcription regulatory region DNA binding
AK018981 | intergenic | up | down | negtive | chr10 | + | 56224306 | 56225093 | NM_008297 | Hsf2 | heat shock factor 2 | transcription, DNA-dependent
AK005643 | intergenic | up | up | positive | chr1 | + | 56075821 | 56077047 | NM_027661 | Hsfy2 | heat shock transcription factor, Y linked 2 | sequence-specific DNA binding transcription factor activity
uc008osm | exonic sense | down | down | positive | chr3 | + | 19958290 | 20018362 | NM_144959 | Hltf | helicase-like transcription factor | regulation of transcription from RNA polymerase II promoter;transcription, DNA-dependent
AK018976 | intergenic | up | down | negtive | chr19 | + | 37539743 | 37546317 | NM_008245 | [NAME] | hematopoietically expressed homeobox | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK013488 | intronic sense | down | down | positive | chr11 | - | 90217875 | 90219144 | NM_172563 | Hlf | hepatic leukemia factor | transcription, DNA-dependent
AK015974 | intergenic | up |  |  | chr5 | - | 100376332 | 100377245 | NM_001077265 | Hnrnpd | heterogeneous nuclear ribonucleoprotein D | regulation of transcription, DNA-dependent
uc007niz | exonic sense | up | down | negtive | chr12 | - | 34780741 | 35601767 | NM_024124 | Hdac9 | histone deacetylase 9 | negative regulation of transcription from RNA polymerase II promoter; transcription, DNA-dependent
AK054058 | intergenic | down | down | positive | chr6 | - | 52178277 | 52180531 | NM_001122950 | Hoxa10 | homeobox A10 | transcription, DNA-dependent
AK054058 | intergenic | down | up | negtive | chr6 | - | 52178277 | 52180531 | NM_010456 | Hoxa9 | homeobox A9 | transcription, DNA-dependent
AK078606 | intergenic | down | down | positive | chr11 | + | 96064767 | 96066699 | NM_008267 | Hoxb13 | homeobox B13 | transcription, DNA-dependent
AK002860 | intergenic | up | down | negtive | chr11 | - | 96152349 | 96168224 | NM_010459 | Hoxb4 | homeobox B4 | negative regulation of transcription from RNA polymerase II promoter
AK002860 | intergenic | up | down | negtive | chr11 | - | 96152349 | 96168224 | NM_010460 | Hoxb7 | homeobox B7 | transcription, DNA-dependent
AK078606 | intergenic | down | down | positive | chr11 | + | 96064767 | 96066699 | NM_008270 | [NAME] | homeobox B9 | transcription, DNA-dependent
AK035706 | intergenic | up |  |  | chr15 | - | 102774492 | 102778161 | NM_001024842 | Hoxc11 | homeobox C11 | transcription, DNA-dependent
AK035706 | intergenic | up | up | positive | chr15 | - | 102774492 | 102778161 | NM_010463 | Hoxc12 | homeobox C12 | transcription, DNA-dependent
AK043982 | intergenic | up | down | negtive | chr15 | + | 102627925 | 102649975 | NM_010464 | [NAME] | homeobox C13 | transcription, DNA-dependent
AK052984 | intergenic | up | down | negtive | chr15 | - | 102953500 | 102977259 | NM_013553 | [NAME] | homeobox C4 | transcription, DNA-dependent
AK144266 | intergenic | up | down | negtive | chr2 | + | 74590740 | 74591797 | NM_010467 | Hoxd1 | homeobox D1 | sequence-specific DNA binding transcription factor activity
AK144266 | intergenic | up |  |  | chr2 | + | 74590740 | 74591797 | NM_010468 | Hoxd3 | homeobox D3 | transcription, DNA-dependent
AK006850 | intergenic | up | down | negtive | chr5 | - | 38361195 | 38374840 | NM_010835 | Msx1 | homeobox, msh-like 1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK016162 | exonic antisense | up |  |  | chr3 | + | 103575895 | 103593325 | NM_010432 | Hipk1 | homeodomain interacting protein kinase 1 | negative regulation of transcription from RNA polymerase II promoter;transcription, DNA-dependent
AK076703 | exonic antisense | up | down | negtive | chr6 | + | 38670880 | 38730261 | NM_001136065 | Hipk2 | homeodomain interacting protein kinase 2 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription from RNA polymerase II promoter
AK015665 | intergenic | up |  |  | chr2 | + | 104399340 | 104411586 | NM_010434 | [NAME] | homeodomain interacting protein kinase 3 | negative regulation of transcription from RNA polymerase II promoter
AK033584 | intronic sense | down |  |  | chr10 | + | 13692241 | 13695040 | NM_010437 | Hivep2 | human immunodeficiency virus type I enhancer binding protein 2 | transcription, DNA-dependent
AK038070 | intergenic | down |  |  | chr4 | + | 119808076 | 119810647 | NM_010657 | Hivep3 | human immunodeficiency virus type I enhancer binding protein 3 | positive regulation of transcription, DNA-dependent
AK090292 | intergenic | down | down | positive | chr17 | + | 21653676 | 21667959 | NM_013843 | Zfp53 | zinc finger protein 53 | regulation of transcription, DNA-dependent
AK090292 | intergenic | down | down | positive | chr17 | + | 21653676 | 21667959 | NM_144515 | Zfp52 | zinc finger protein 52 | regulation of transcription, DNA-dependent
AK048798 | exonic antisense | up | down | negtive | chr12 | - | 75027467 | 75050772 | NM_010431 | Hif1a | hypoxia inducible factor 1, alpha subunit | regulation of transcription from RNA polymerase II promoter in response to oxidative stress
AK006563 | intergenic | up |  |  | chr19 | - | 3153210 | 3197714 | NM_009212 | Ighmbp2 | [NAME] binding protein 2 | negative regulation of transcription from RNA polymerase II promoter;transcription, DNA-dependent
AK035610 | intergenic | down | down | positive | chr13 | + | 16120652 | 16123187 | NM_008380 | Inhba | inhibin beta-A | negative regulation of transcription from RNA polymerase II promoter
AK037391 | intergenic | down | down | positive | chr2 | + | 152553443 | 152556535 | NM_010495 | Id1 | inhibitor of DNA binding 1 | negative regulation of transcription from RNA polymerase II promoter
AK015551 | intergenic | up | up | positive | chr13 | + | 47762918 | 47763761 | NM_031166 | Id4 | inhibitor of DNA binding 4 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription from RNA polymerase II promoter
AK040992 | intergenic | up | down | negtive | chr6 | - | 21802980 | 21808178 | NM_023626 | Ing3 | inhibitor of growth family, member 3 | regulation of transcription, DNA-dependent
AK082420 | intronic sense | down |  |  | chr4 | - | 56777214 | 56779425 | NM_026079 | Ikbkap | inhibitor of kappa light polypeptide enhancer in B cells, kinase complex-associated protein | regulation of transcription from RNA polymerase II promoter
uc009ldv | exonic sense | down |  |  | chr8 | - | 23812926 | 23817035 | NM_010546 | Ikbkb | inhibitor of kappaB kinase beta | positive regulation of NF-kappaB transcription factor activity
Aldoart2 | intergenic | up |  |  | chr12 | + | 56666121 | 56667696 | NM_020287 | Insm2 | insulinoma-associated 2 | negative regulation of transcription, DNA-dependent
AK007736 | intergenic | down | down | positive | chr10 | - | 118292660 | 118293990 | NM_008337 | Ifng | [NAME] | positive regulation of transcription from RNA polymerase II promoter
AK138811 | intergenic | down | down | positive | chr11 | - | 53598990 | 53672758 | NM_001159396 | Irf1 | interferon regulatory factor 1 | positive regulation of transcription from RNA polymerase II promoter
AK050834 | exonic antisense | down |  |  | chr8 | + | 129090869 | 129114888 | NM_001164598 | Irf2bp2 | interferon regulatory factor 2 binding protein 2 | regulation of transcription, DNA-dependent
AK004221 | intergenic | down |  |  | chr8 | - | 123582702 | 123584313 | NM_008320 | Irf8 | interferon regulatory factor 8 | positive regulation of transcription, DNA-dependent
AK007196 | intergenic | up | up | positive | chr1 | + | 20704357 | 20704824 | NM_010552 | Il17a | interleukin 17A | positive regulation of transcription from RNA polymerase II promoter
AK006870 | intergenic | up | up | positive | chr9 | + | 82153899 | 82157092 | NM_022986 | Irak1bp1 | interleukin-1 receptor-associated kinase 1 binding protein 1 | regulation of transcription, DNA-dependent
AK006003 | intergenic | up | down | negtive | chr6 | - | 113581642 | 113583138 | NM_172161 | Irak2 | interleukin-1 receptor-associated kinase 2 | negative regulation of NF-kappaB transcription factor activity; positive regulation of NF-kappaB transcription factor activity
AK006389 | intergenic | up |  |  | chr16 | - | 49210753 | 49255885 | NM_028680 | Ift57 | intraflagellar transport 57 | regulation of transcription, DNA-dependent
AK006196 | bidirectional | up |  |  | chr15 | + | 74539780 | 74540778 | NM_008415 | Jrk | [NAME] | DNA binding
AK019567 | intergenic | up | up | positive | chr5 | - | 46318060 | 46323648 | NM_172153 | Lcorl | ligand dependent nuclear receptor corepressor-like | regulation of transcription from RNA polymerase II promoter
AK029296 | exonic antisense | up | up | positive | chr3 | - | 130811943 | 130815008 | NM_010703 | Lef1 | lymphoid enhancer binding factor 1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK010802 | exonic antisense | up | down | negtive | chr4 | - | 73896768 | 73898483 | NM_144787 | Kdm4c | lysine (K)-specific demethylase 4C | regulation of transcription from RNA polymerase II promoter
AK013706 | intergenic | down | down | positive | chrX | - | 148749758 | 148750260 | NM_013668 | Kdm5c | lysine (K)-specific demethylase 5C | regulation of transcription, DNA-dependent
AK086422 | intronic sense | down | down | positive | chr3 | - | 51676911 | 51679758 | NM_001004176 | Maml3 | mastermind like 3 (Drosophila) | positive regulation of transcription from RNA polymerase II promoter
AK006966 | intergenic | down | down | positive | chr5 | + | 119558242 | 119564552 | NM_172424 | Med13l | mediator complex subunit 13-like | transcription from RNA polymerase II promoter
AK017500 | intergenic | down |  |  | chrX | + | 12619140 | 12622421 | NM_012005 | Med14 | mediator complex subunit 14 | positive regulation of transcription from RNA polymerase II promoter
AK016836 | intergenic | up |  |  | chr13 | + | 70098710 | 70102315 | NM_138596 | Med10 | mediator complex subunit 10 | positive regulation of transcription from RNA polymerase II promoter
AK037414 | exonic sense | down |  |  | chr12 | - | 82681630 | 82684348 | NM_027213 | Med6 | mediator complex subunit 6 | RNA polymerase II transcription cofactor activity
AK007947 | intergenic | down |  |  | chr11 | + | 59735000 | 59735391 | NM_138675 | Med9 | mediator complex subunit 9 | RNA polymerase II transcription cofactor activity
AK076700 | intergenic | up |  |  | chr11 | + | 101813733 | 101821887 | NM_010791 | [NAME] | mesenchyme homeobox 1 | positive regulation of transcription from RNA polymerase II promoter
AK052676 | intronic sense | down | down | positive | chrX | - | 71326373 | 71329610 | NM_001081979 | Mecp2 | methyl CpG binding protein 2 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription, DNA-dependent
AK006816 | intergenic | up | down | negtive | chr16 | + | 17047612 | 17049204 | NM_011949 | Mapk1 | mitogen-activated protein kinase 1 | positive regulation of transcription, DNA-dependent
AK017098 | intergenic | up |  |  | chr4 | - | 48983567 | 48985037 | NM_026509 | Murc | muscle-related coiled-coil protein | positive regulation of transcription from RNA polymerase II promoter
AK048225 | exonic sense | up | up | positive | chr12 | + | 30213265 | 30216444 | NM_001093778 | Myt1l | [NAME] transcription factor 1-like | sequence-specific DNA binding transcription factor activity
AK040104 | intergenic | up | down | negtive | chr15 | - | 63245954 | 63311163 | NM_010849 | Myc | myelocytomatosis oncogene | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK149295 | intergenic | down | down | positive | chr5 | + | 25005758 | 25008367 | NM_001081383 | Mll3 | myeloid/lymphoid or mixed-lineage leukemia 3 | regulation of transcription, DNA-dependent
AK013579 | intergenic | down |  |  | chr5 | - | 22910094 | 22910891 | NM_026984 | Mll5 | myeloid/lymphoid or mixed-lineage leukemia 5 | positive regulation of transcription, DNA-dependent
AK054505 | intronic sense | down | down | positive | chr13 | + | 83761110 | 83764562 | NM_025282 | Mef2c | myocyte enhancer factor 2C | negative regulation of transcription from RNA polymerase II promoter
AK006355 | intergenic | up |  |  | chr7 | - | 53601140 | 53604424 | NM_010866 | Myod1 | myogenic differentiation 1 | positive regulation of transcription from RNA polymerase II promoter
AK078191 | intergenic | up | down | negtive | chr7 | - | 68849404 | 69072460 | NM_010882 | [NAME] | necdin | regulation of transcription, DNA-dependent
AK036157 | exonic sense | down | down | positive | chr9 | - | 58755078 | 58758922 | NM_008684 | Neo1 | neogenin | regulation of transcription, DNA-dependent
AK137938 | intronic sense | down |  |  | chr14 | - | 56283881 | 56286994 | NM_008683 | Nedd8 | neural precursor cell expressed, developmentally down-regulated gene 8 | regulation of transcription from RNA polymerase II promoter
[NAME] | intronic sense | down | down | positive | chr8 | - | 32955571 | 32959506 | NM_178591 | Nrg1 | [NAME] 1 | negative regulation of transcription, DNA-dependent
AK082480 | intronic sense | down |  |  | chr12 | + | 54479892 | 54482768 | NM_013780 | Npas3 | neuronal PAS domain protein 3 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK016875 | intergenic | up |  |  | chr6 | + | 85326195 | 85327901 | NM_001007472 | Noto | notochord homolog ([NAME] laevis) | transcription, DNA-dependent
AK083863 | intronic sense | down | down | positive | chr4 | + | 97569249 | 97572379 | NM_001122952 | Nfia | nuclear factor I/A | positive regulation of transcription from RNA polymerase II promoter
AK031521 | intronic sense | down | down | positive | chr4 | - | 81961648 | 81965801 | NM_001113210 | Nfib | nuclear factor I/B | positive regulation of transcription from RNA polymerase II promoter
AK004108 | intronic sense | down | down | positive | chr8 | + | 109836576 | 109837937 | NM_133957 | [NAME] | nuclear factor of activated T cells 5 | positive regulation of transcription from RNA polymerase II promoter
AK079818 | intergenic | up | down | negtive | chr18 | - | 80738630 | 80741285 | NM_198429 | Nfatc1 | nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1 | positive regulation of transcription from RNA polymerase II promoter
AK077216 | exonic antisense | up |  |  | chr7 | + | 133539371 | 133541259 | NM_010900 | Nfatc2ip | nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein | regulation of transcription, DNA-dependent
Aldoart2 | intergenic | up | down | negtive | chr12 | + | 56666121 | 56667696 | NM_010907 | Nfkbia | nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, alpha | positive regulation of transcription from RNA polymerase II promoter
AK149068 | intronic sense | down |  |  | chr2 | - | 75520476 | 75522078 | NM_010902 | Nfe2l2 | nuclear factor, erythroid derived 2, like 2 | positive regulation of transcription from RNA polymerase II promoter
AK038502 | exonic antisense | down |  |  | chr11 | + | 62138977 | 62141804 | NM_011308 | Ncor1 | nuclear receptor co-repressor 1 | negative regulation of transcription from RNA polymerase II promoter
AK020076 | exonic sense | down | down | positive | chr16 | - | 76351833 | 76373294 | NM_173440 | Nrip1 | nuclear receptor interacting protein 1 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription from RNA polymerase II promoter
AK053029 | exonic antisense | down | down | positive | chr11 | + | 98630309 | 98634716 | NM_145434 | Nr1d1 | nuclear receptor subfamily 1, group D, member 1 | negative regulation of transcription from RNA polymerase II promoter
AK016127 | intergenic | up | down | negtive | chr2 | + | 57034241 | 57040668 | NM_001139509 | Nr4a2 | nuclear receptor subfamily 4, group A, member 2 | positive regulation of transcription from RNA polymerase II promoter
AK133250 | intergenic | up |  |  | chr4 | + | 48009327 | 48013333 | NM_015743 | Nr4a3 | nuclear receptor subfamily 4, group A, member 3 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
AK076660 | intergenic | up | down | negtive | chr1 | - | 139824965 | 139865817 | NM_001159769 | Nr5a2 | nuclear receptor subfamily 5, group A, member 2 | positive regulation of transcription from RNA polymerase II promoter
AK076883 | intergenic | up | down | negtive | chr6 | + | 29935330 | 29943776 | NM_010938 | Nrf1 | nuclear respiratory factor 1 | transcription, DNA-dependent
AK006461 | intergenic | up | down | negtive | chr10 | + | 82274867 | 82286987 | NM_010914 | [NAME] | nuclear transcription factor-Y beta | positive regulation of transcription, DNA-dependent
BC048666 | intergenic | up | down | negtive | chr18 | - | 64317377 | 64436834 | NM_194268 | Onecut2 | one cut domain, family member 2 | positive regulation of transcription from RNA polymerase II promoter
AK044555 | intergenic | up |  |  | chr14 | + | 49498260 | 49499768 | NM_144841 | Otx2 | orthodenticle homolog 2 (Drosophila) | positive regulation of transcription from RNA polymerase II promoter
AK007144 | exonic antisense | up | up | positive | chr2 | + | 144157524 | 144158374 | NM_026924 | [NAME] | ovo-like 2 (Drosophila) | negative regulation of transcription, DNA-dependent
AB080658 | intergenic | up | up | positive | chr2 | - | 147187278 | 147188529 | NM_008780 | Pax1 | paired box gene 1 | positive regulation of transcription from RNA polymerase II promoter
AK040987 | intergenic | up |  |  | chr4 | - | 44537628 | 44539061 | NM_008782 | Pax5 | paired box gene 5 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription from RNA polymerase II promoter
AK016813 | intergenic | up |  |  | chr11 | - | 50754215 | 50757243 | NM_008936 | Prop1 | paired like homeodomain factor 1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK016894 | intergenic | up | up | positive | chr3 | - | 128402450 | 128404467 | NM_001042504 | Pitx2 | paired-like homeodomain transcription factor 2 | positive regulation of transcription from RNA polymerase II promoter
AK015420 | intergenic | up |  |  | chr5 | + | 50542571 | 50547331 | NM_008904 | Ppargc1a | peroxisome proliferative activated receptor, gamma, coactivator 1 alpha | positive regulation of transcription from RNA polymerase II promoter
AK038224 | intergenic | down |  |  | chr15 | + | 85507171 | 85511265 | NM_011144 | Ppara | peroxisome proliferator activated receptor alpha | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription from RNA polymerase II promoter
AK006266 | bidirectional | up | up | positive | chr7 | - | 88357073 | 88358059 | NM_008803 | Pde8a | phosphodiesterase 8A | regulation of transcription, DNA-dependent
AK053128 | exonic antisense | down | down | positive | chr13 | + | 95793782 | 95796423 | NM_172263 | Pde8b | phosphodiesterase 8B | regulation of transcription, DNA-dependent
AK015361 | intergenic | up | up | positive | chr12 | + | 75943761 | 75950648 | NM_172805 | Kcnh5 | potassium voltage-gated channel, subfamily H (eag-related), member 5 | regulation of transcription, DNA-dependent
AK030176 | intronic sense | up | down | negtive | chr1 | - | 170278664 | 170280939 | NM_183355 | Pbx1 | pre B cell leukemia homeobox 1 | positive regulation of transcription from RNA polymerase II promoter
NR_026798 | intergenic | up | down | negtive | chr13 | - | 21596184 | 21598393 | NM_001039115 | Zkscan4 | zinc finger with KRAB and SCAN domains 4 | transcription, DNA-dependent
AK018974 | intergenic | up |  |  | chr12 | - | 82024422 | 82025434 | NM_009159 | [NAME] | serine/arginine-rich splicing factor 5 | regulation of transcription, DNA-dependent
AK145430 | bidirectional | up |  |  | chr12 | - | 82043659 | 82046383 | NM_009159 | [NAME] | serine/arginine-rich splicing factor 5 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK144510 | intergenic | down | down | positive | chr5 | - | 149770464 | 149771256 | NM_010439 | Hmgb1 | high mobility group box 1 | negative regulation of RNA polymerase II transcriptional preinitiation complex assembly; positive regulation of transcription from RNA polymerase II promoter
AK019745 | intronic antisense | up |  |  | chr4 | - | 146771276 | 146773788 | NM_001039209 | Gm13152 | predicted gene 13152 | regulation of transcription, DNA-dependent
AK161354 | intergenic | up | up | positive | chr4 | + | 145651140 | 145655251 | NM_001103158 | Gm13242 | predicted gene 13242 | regulation of transcription, DNA-dependent
AK017111 | intergenic | up |  |  | chr4 | - | 146437474 | 146442545 | NM_001083918 | Gm13139 | predicted gene  13139 | regulation of transcription, DNA-dependent
AK140411 | exonic sense | down | down | positive | chr4 | - | 19536334 | 19538876 | NM_177327 | Wwp1 | WW domain containing E3 ubiquitin protein ligase 1 | negative regulation of transcription, DNA-dependent
LOC626832 | intergenic | down |  |  | chr2 | - | 177670697 | 177691993 | NM_001024849 | Gm14325 | predicted gene 14325 | regulation of transcription, DNA-dependent
AK019828 | intergenic | up | up | positive | chr10 | + | 116039847 | 116040350 | NM_001033333 | Gm239 | predicted gene  239 | sequence-specific DNA binding transcription factor activity
BC066226 | intergenic | down |  |  | chr13 | + | 61872943 | 61902020 | NM_001039239 | [NAME] | zinc finger protein 80 | regulation of transcription, DNA-dependent
AK042238 | exonic sense | down | down | positive | chr4 | + | 3502043 | 3503929 | NM_054089 | Tgs1 | trimethylguanosine synthase homolog (S. cerevisiae) | regulation of transcription, DNA-dependent
AK147860 | exonic antisense | up | up | positive | chr8 | + | 98330729 | 98345628 | NM_178078 | Cnot1 | CCR4-NOT transcription complex, subunit 1 | regulation of transcription, DNA-dependent
AK007113 | exonic antisense | up | down | negtive | chr4 | + | 118966741 | 118967752 | NM_011732 | Ybx1 | Y box protein 1 | negative regulation of transcription from RNA polymerase II promoter;transcription, DNA-dependent
BC098228 | exonic antisense | up | up | positive | chr10 | + | 119801226 | 119819892 | NM_010441 | Hmga2 | high mobility group AT-hook 2 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription; RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
AK017178 | intronic sense | down | down | positive | chrX | - | 45794781 | 45796288 | NM_019680 | Elf4 | E74-like factor 4 (ets domain transcription factor) | positive regulation of transcription from RNA polymerase II promoter
AK006506 | bidirectional | up | down | negtive | chr11 | + | 70468664 | 70469141 | NM_011072 | Pfn1 | profilin 1 | positive regulation of transcription from RNA polymerase II promoter
AK041313 | exonic antisense | down | down | positive | chr19 | - | 47200639 | 47202971 | NM_011053 | Pdcd11 | programmed cell death 11 | regulation of transcription, DNA-dependent
AK030271 | intergenic | up | up | positive | chr13 | + | 13127124 | 13131203 | NM_031191 | Prl2c2 | [NAME] family 2, subfamily c, member 2 | positive regulation of transcription from RNA polymerase II promoter
AK015152 | intergenic | up | down | negtive | chr5 | + | 123728136 | 123729594 | NM_026000 | Psmd9 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 | positive regulation of transcription, DNA-dependent
AK015850 | bidirectional | up | down | negtive | chr18 | - | 77302865 | 77303796 | NM_008602 | Pias2 | protein inhibitor of activated STAT 2 | positive regulation of transcription from RNA polymerase II promoter
AK015663 | bidirectional | up | down | negtive | chr18 | - | 77303132 | 77303866 | NM_008602 | Pias2 | protein inhibitor of activated STAT 2 | positive regulation of transcription from RNA polymerase II promoter
AK029795 | intergenic | up | down | negtive | chr10 | + | 60494050 | 60500828 | NM_025273 | Pcbd1 | pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1 | positive regulation of transcription, DNA-dependent
BC002209 | exonic antisense | up |  |  | chr11 | + | 6375032 | 6375427 | NM_011221 | Purb | purine rich element binding protein B | negative regulation of transcription, DNA-dependent
AK004326 | intergenic | up | down | negtive | chr5 | + | 20234211 | 20234710 | NM_172992 | Phtf2 | putative homeodomain transcription factor 2 | regulation of transcription, DNA-dependent
BC048601 | intergenic | up | down | negtive | chr13 | - | 37783953 | 37809517 | NM_026830 | Rreb1 | ras responsive element binding protein 1 | negative regulation of transcription, DNA-dependent
AK017377 | exonic sense | up | up | positive | chr17 | - | 56969081 | 56970333 | NM_027787 | Rfx2 | regulatory factor X, 2 (influences HLA class II expression) | regulation of transcription, DNA-dependent
AK006689 | intergenic | up | up | positive | chr10 | + | 51386794 | 51395637 | NM_001159389 | Rfx6 | regulatory factor X, 6 | positive regulation of transcription, DNA-dependent
2310073E15Rik | exonic antisense | down | down | positive | chr8 | + | 72655231 | 72656553 | NM_011266 | Rfxank | regulatory factor X-associated ankyrin-containing protein (Rfxank) | positive regulation of transcription from RNA polymerase II promoter
AK019036 | intergenic | up | down | negtive | chr16 | - | 93344988 | 93354316 | NM_001111021 | Runx1 | runt related transcription factor 1 | positive regulation of transcription from RNA polymerase II promoter
AK007217 | intergenic | up |  |  | chr4 | - | 14146642 | 14164597 | NM_001111027 | Runx1t1 | runt-related transcription factor 1; translocated to, 1 (cyclin D-related) | regulation of transcription, DNA-dependent
AK016392 | intergenic | up |  |  | chr18 | - | 81422945 | 81432805 | NM_178280 | Sall3 | sal-like 3 (Drosophila) | regulation of transcription, DNA-dependent
AK006937 | intergenic | up | down | negtive | chr1 | - | 51514777 | 51515775 | NM_138741 | Sdpr | serum deprivation response | positive regulation of transcription from RNA polymerase II promoter
AK161715 | exonic sense | up |  |  | chr10 | + | 42580461 | 42583123 | NM_172938 | Scml4 | sex comb on midleg-like 4 (Drosophila) | regulation of transcription, DNA-dependent
AK088966 | exonic sense | down | down | positive | chr11 | - | 100682021 | 100684248 | NM_001113563 | Stat5b | signal transducer and activator of transcription 5B | positive regulation of transcription from RNA polymerase II promoter
AK006707 | intergenic | up | down | negtive | chr15 | + | 11896816 | 11899819 | NM_011294 | Sub1 | SUB1 homolog (S. cerevisiae) | regulation of transcription from RNA polymerase II promoter
AK005857 | intergenic | up | down | negtive | chr7 | + | 79106060 | 79172203 | NM_183261 | Nr2f2 | nuclear receptor subfamily 2, group F, member 2 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription, DNA-dependent
AK051651 | exonic antisense | down | down | positive | chr7 | + | 77509795 | 77513505 | NM_183261 | Nr2f2 | nuclear receptor subfamily 2, group F, member 2 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription, DNA-dependent
AK032419 | intergenic | down |  |  | chr9 | + | 13349094 | 13352732 | NM_001013813 | Maml2 | mastermind like 2 (Drosophila) | positive regulation of transcription from RNA polymerase II promoter
AK142969 | intronic sense | down | down | positive | chr7 | - | 74427442 | 74429566 | NM_001033713 | Mef2a | myocyte enhancer factor 2A | negative regulation of transcription from RNA polymerase II promoter
AK135606 | intronic sense | down |  |  | chr2 | - | 34193103 | 34195572 | NM_016768 | Pbx3 | pre B cell leukemia homeobox 3 | negative regulation of transcription from RNA polymerase II promoter
AK015151 | intronic sense | down | down | positive | chr2 | + | 105001980 | 105002756 | NM_144783 | Wt1 | Wilms tumor 1 homolog | transcription, DNA-dependent
AK161337 | intergenic | down | down | positive | chr7 | + | 28554249 | 28555744 | NM_029531 | Zfp60 | zinc finger protein 60 | regulation of transcription, DNA-dependent
AK053200 | intergenic | down | down | positive | chr8 | - | 118097580 | 118099141 | NM_001025577 | Maf | avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK015580 | intergenic | up | down | negtive | chr18 | - | 36480559 | 36481146 | NM_008989 | Pura | purine rich element binding protein A | negative regulation of transcription, DNA-dependent
AK080243 | intronic sense | down |  |  | chr11 | + | 96668514 | 96669461 | NM_007622 | Cbx1 | chromobox 1 | negative regulation of transcription, DNA-dependent
AK029564 | intergenic | up |  |  | chr13 | + | 53495638 | 53498303 | NM_013601 | Msx2 | homeobox, msh-like 2 (Msx2), | negative regulation of transcription from RNA polymerase II promoter
AK016132 | intergenic | up | up | positive | chr13 | - | 73343540 | 73366548 | NM_010574 | Irx2 | Iroquois related homeobox 2 (Drosophila) | sequence-specific DNA binding transcription factor activity
AK083165 | exonic sense | down | down | positive | chr11 | - | 120486437 | 120490077 | NM_010756 | Mafg | v-maf musculoaponeurotic fibrosarcoma oncogene family, protein G (avian) | transcription, DNA-dependent
AK039045 | intronic sense | down |  |  | chr10 | - | 67629265 | 67629908 | NM_023598 | Arid5b | AT rich interactive domain 5B (MRF1-like) | positive regulation of sequence-specific DNA binding transcription factor activity
AK005214 | exonic sense | down |  |  | chr10 | + | 62563111 | 62563726 | NM_016864 | Atoh7 | atonal homolog 7 (Drosophila) | regulation of transcription, DNA-dependent
AK047823 | intronic sense | down | down | positive | chr11 | + | 115814058 | 115817575 | NM_020483 | Sap30bp | SAP30 binding protein | regulation of transcription, DNA-dependent
AK017011 | intergenic | up | down | negtive | chr13 | + | 91398995 | 91414559 | NM_024272 | [NAME] | single-stranded DNA binding protein 2 | regulation of transcription, DNA-dependent
AK088368 | intronic sense | down | down | positive | chr17 | - | 51884853 | 51888009 | NM_009122 | Satb1 | special AT-rich sequence binding protein 1 | negative regulation of transcription from RNA polymerase II promoter
AK048959 | intronic sense | down | down | positive | chr17 | - | 51896620 | 51901147 | NM_009122 | Satb1 | special AT-rich sequence binding protein 1 | negative regulation of transcription from RNA polymerase II promoter
BC055113 | intergenic | up |  |  | chr1 | + | 57184591 | 57186244 | NM_139146 | Satb2 | special AT-rich sequence binding protein 2 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK133080 | bidirectional | up |  |  | chr11 | - | 79805811 | 79806303 | NM_199196 | Suz12 | suppressor of zeste 12 homolog (Drosophila) | negative regulation of transcription from RNA polymerase II promoter
AK007141 | intergenic | up | down | negtive | chr18 | - | 83462183 | 83495276 | NM_001081300 | Tshz1 | teashirt zinc finger family member 1 | transcription, DNA-dependent
AK035492 | intergenic | down | down | positive | chr2 | - | 169449555 | 169453818 | NM_080455 | Tshz2 | teashirt zinc finger family member 2 | transcription, DNA-dependent
AK084995 | intronic sense | down | down | positive | chr7 | + | 37512195 | 37514581 | NM_172298 | Tshz3 | teashirt zinc finger family member 3 | negative regulation of transcription, DNA-dependent
AK136927 | intergenic | down | down | positive | chr10 | - | 91544494 | 91596204 | NM_001080129 | [NAME] | [NAME] | regulation of transcription, DNA-dependent
AK015026 | intergenic | down | down | positive | chr10 | + | 91863758 | 91880240 | NM_001080129 | [NAME] | [NAME] | regulation of transcription, DNA-dependent
AK019889 | intergenic | up |  |  | chr2 | - | 72622737 | 72651774 | NM_001018042 | Sp3 | trans-acting transcription factor 3 | positive regulation of transcription, DNA-dependent
AK045275 | exonic antisense | down | down | positive | chr2 | - | 73113247 | 73116038 | NM_001005343 | Sp9 | trans-acting transcription factor 9 | regulation of transcription, DNA-dependent
AK048564 | exonic sense | down | down | positive | chr1 | + | 4874402 | 4877121 | NM_001159751 | Tcea1 | transcription elongation factor A (SII) 1 | positive regulation of transcription from RNA polymerase II promoter
AK083519 | bidirectional | up |  |  | chr1 | + | 16647632 | 16652359 | NM_026456 | [NAME] | transcription elongation factor B (SIII), polypeptide 1 | regulation of transcription, DNA-dependent
AK012901 | intronic sense | down | down | positive | chr9 | - | 71831635 | 71833480 | NM_011544 | Tcf12 | transcription factor 12 | positive regulation of transcription, DNA-dependent
AK133162 | exonic antisense | up |  |  | chr15 | + | 82683285 | 82689885 | NM_001114140 | Tcf20 | transcription factor 20 | positive regulation of transcription from RNA polymerase II promoter
AK080278 | intronic antisense | up |  |  | chr15 | + | 82729509 | 82736246 | NM_001114140 | Tcf20 | transcription factor 20 | positive regulation of transcription from RNA polymerase II promoter
AK033378 | intron antisense | down | down | positive | chr10 | + | 22535554 | 22543136 | NM_011545 | Tcf21 | transcription factor 21 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription;RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
AK053994 | intronic antisense | up | down | negtive | chr6 | + | 72649207 | 72655084 | NM_001079822 | Tcf7l1 | transcription factor 7 like 1 (T cell specific, HMG box) | negative regulation of transcription, DNA-dependent; positive regulation of transcription from RNA polymerase II promoter during mitosis
AK032144 | intronic sense | down | down | positive | chr18 | + | 69573491 | 69574662 | NM_013685 | Tcf4 | transcription factor 4 | negative regulation of transcription from RNA polymerase II promoter;transcription initiation from RNA polymerase II promoter
AK021120 | intronic sense | down | down | positive | chr18 | + | 69752256 | 69752713 | NM_013685 | Tcf4 | transcription factor 4 | negative regulation of transcription from RNA polymerase II promoter;transcription initiation from RNA polymerase II promoter
AK038091 | intronic sense | down | down | positive | chr11 | - | 52084887 | 52089239 | NM_009331 | [NAME] | transcription factor 7, T cell specific | negative regulation of transcription from RNA polymerase II promoter
AK007128 | intergenic | up | down | negtive | chr19 | + | 56140617 | 56141424 | NM_009333 | Tcf7l2 | transcription factor 7 like 2, T cell specific, HMG box | regulation of transcription from RNA polymerase II promoter
AK084192 | intronic sense | down | down | positive | chr19 | + | 55847319 | 55849810 | NM_009333 | Tcf7l2 | transcription factor 7 like 2, T cell specific, HMG box | regulation of transcription from RNA polymerase II promoter
AK083427 | intronic sense | down | down | positive | chr19 | + | 55900229 | 55903697 | NM_009333 | Tcf7l2 | transcription factor 7 like 2, T cell specific, HMG box | regulation of transcription from RNA polymerase II promoter
AK018958 | intergenic | up | down | negtive | chr10 | + | 70664492 | 70667235 | NM_009360 | Tfam | transcription factor A, mitochondrial | positive regulation of transcription, DNA-dependent
AK006845 | intergenic | up |  |  | chr2 | + | 172688060 | 172688623 | NM_009335 | Tfap2c | transcription factor AP-2, gamma | positive regulation of transcription from RNA polymerase II promoter
AK015782 | bidirectional | up | up | positive | chr17 | + | 3557823 | 3559862 | NM_146074 | Tfb1m | transcription factor B1, mitochondrial | regulation of transcription, DNA-dependent
AK030164 | exonic antisense | up |  |  | chr1 | - | 168308012 | 168310049 | NM_030245 | Tada1 | transcriptional adaptor 1 | regulation of transcription, DNA-dependent
AK042305 | intergenic | down | down | positive | chr17 | + | 47498212 | 47498903 | NM_172622 | Trerf1 | transcriptional regulating factor 1 | positive regulation of transcription, DNA-dependent
AK012238 | intronic antisense | up | down | negtive | chr9 | - | 56923022 | 56923820 | NM_001110351 | Sin3a | transcriptional regulator, SIN3A (yeast) | regulation of transcription from RNA polymerase II promoter in response to oxidative stress
AK015118 | intergenic | up |  |  | chr3 | + | 23359971 | 23420249 | NM_030732 | Tbl1xr1 | [NAME] (beta)-like 1X-linked receptor 1 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK043880 | bidirectional | down | down | positive | chr4 | + | 71862287 | 71864964 | NM_011599 | Tle1 | transducin-like enhancer of split 1 homolog of [NAME]) | negative regulation of transcription from RNA polymerase II promoter
AK017039 | intergenic | up | down | negtive | chr9 | - | 60950818 | 60953192 | NM_001083927 | Tle3 | transducin-like enhancer of split 3, homolog of [NAME]) | regulation of transcription, DNA-dependent
AK030733 | intronic sense | down | down | positive | chr19 | - | 14559762 | 14562794 | NM_011600 | Tle4 | transducin-like enhancer of split 4, homolog of [NAME]) | negative regulation of transcription from RNA polymerase II promoter
AK006053 | intergenic | up | up | positive | chr1 | - | 73069058 | 73069453 | NM_009407 | Tnp1 | transition protein 1 | DNA binding
AK051400 | intronic sense | down | down | positive | chr15 | - | 50557186 | 50559915 | NM_032000 | Trps1 | trichorhinophalangeal syndrome I (human) | negative regulation of transcription, DNA-dependent
[NAME] | bidirectional | up | up | positive | chr7 | + | 116637610 | 116638627 | NM_181853 | Trim66 | tripartite motif-containing 66 | negative regulation of transcription, DNA-dependent
BC060604 | exonic antisense | down | down | positive | chr1 | - | 93695104 | 93699514 | NM_007855 | Twist2 | twist homolog 2 (Drosophila) | negative regulation of transcription from RNA polymerase II promoter
AK144366 | intergenic | down |  |  | chr7 | - | 147142903 | 147143938 | [NAME] | Utf1 | undifferentiated embryonic cell transcription factor 1 | positive regulation of transcription from RNA polymerase II promoter
AK015836 | intergenic | up | down | negtive | chr12 | + | 12909525 | 12914184 | NM_008709 | Mycn | v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian) | positive regulation of transcription from RNA polymerase II promoter
AK016022 | intergenic | up | down | negtive | chr17 | - | 46016798 | 46018389 | NM_001025257 | Vegfa | vascular endothelial growth factor A | positive regulation of transcription from RNA polymerase II promoter
AK076253 | intronic sense | down | down | positive | chr6 | - | 114851924 | 114855164 | NM_177683 | [NAME] | vestigial like 4 (Drosophila) | regulation of transcription, DNA-dependent
AK006740 | exonic antisense | up | down | negtive | chr9 | + | 7965837 | 7977004 | NM_009534 | Yap1 | yes-associated protein 1 | positive regulation of transcription from RNA polymerase II promoter
AY039009 | intronic sense | down | down | positive | chr2 | - | 44929031 | 44935120 | NM_015753 | Zeb2 | zinc finger E-box binding homeobox 2 | transcription, DNA-dependent
AK080917 | intronic sense | down | down | positive | chr9 | - | 48502581 | 48505735 | NM_001033324 | Zbtb16 | zinc finger and BTB domain containing 16 | negative regulation of transcription, DNA-dependent; positive regulation of transcription, DNA-dependent
AK020870 | intronic sense | down | down | positive | chr16 | + | 43578557 | 43578941 | NM_181058 | Zbtb20 | zinc finger and BTB domain containing 20 | RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
AK015174 | intergenic | up |  |  | chr9 | - | 30836564 | 30837420 | NM_001115130 | [NAME] | zinc finger and BTB domain containing 44 | regulation of transcription, DNA-dependent
AK083706 | intergenic | down |  |  | chr8 | + | 111599121 | 111777539 | NM_007496 | Zfhx3 | zinc finger homeodomain 3 | negative regulation of transcription from RNA polymerase II promoter
AK019767 | intergenic | up | down | negtive | chr3 | - | 5512994 | 5515333 | NM_030708 | Zfhx4 | zinc finger homeodomain 4 | sequence-specific DNA binding transcription factor activity
AK087385 | intronic sense | down |  |  | chr17 | + | 21877465 | 21879333 | NM_001164676 | Zfp229 | zinc finger protein 229 | regulation of transcription, DNA-dependent
AK006947 | intergenic | up |  |  | chr13 | - | 141204 | 142745 | NM_028245 | Zfp131 | zinc finger protein 131 | regulation of transcription, DNA-dependent
AK078757 | intergenic | down |  |  | chr7 | + | 117201685 | 117204328 | NM_009281 | Zfp143 | zinc finger protein 143 | regulation of transcription, DNA-dependent
AK160141 | bidirectional | up |  |  | chr16 | - | 33379940 | 33380813 | NM_011749 | Zfp148 | zinc finger protein 148 | negative regulation of transcription from RNA polymerase II promoter; positive regulation of transcription from RNA polymerase II promoter
AK030245 | intergenic | up | down | negtive | chr17 | + | 21228171 | 21240311 | NM_145483 | Zfp160 | zinc finger protein 160 | regulation of transcription, DNA-dependent
AK015230 | exonic antisense | up | up | positive | chr13 | + | 48586430 | 48587428 | NM_001164575 | Zfp169 | zinc finger protein 169 | regulation of transcription, DNA-dependent
NR_026798 | intergenic | up | down | negtive | chr13 | - | 21596184 | 21598393 | NM_139141 | [NAME] | zinc finger protein 192 | transcription, DNA-dependent
AK042866 | exonic antisense | up | down | negtive | chr6 | + | 118405224 | 118405719 | NM_028335 | Zfp248 | zinc finger protein 248 | regulation of transcription, DNA-dependent
BC100427 | intergenic | up | down | negtive | chr13 | + | 67932042 | 67944229 | NM_198322 | Zfp273 | zinc finger protein 273 | regulation of transcription, DNA-dependent
AK016750 | intergenic | up | down | negtive | chr1 | - | 138499609 | 138502045 | NM_177643 | Zfp281 | zinc finger protein 281 | Transcription regulation
AK019541 | intergenic | up |  |  | chr11 | - | 62570679 | 62574060 | NM_138949 | Zfp286 | zinc finger protein 286 | regulation of transcription, DNA-dependent
AK019541 | intergenic | up |  |  | chr11 | - | 62570679 | 62574060 | NM_133208 | Zfp287 | zinc finger protein 287 | positive regulation of transcription, DNA-dependent
AK015451 | intergenic | up | down | negtive | chrX | - | 20783706 | 20798791 | NM_183185 | Zfp300 | zinc finger protein 300 | regulation of transcription, DNA-dependent
AK016161 | intergenic | up | down | negtive | chr13 | - | 23368072 | 23405269 | NM_172586 | Zfp322a | zinc finger protein 322A | regulation of transcription, DNA-dependent
AK019651 | intergenic | up | down | negtive | chr7 | - | 13535041 | 13535415 | NM_178732 | Zfp324 | zinc finger protein 324 | regulation of transcription, DNA-dependent
AK015287 | intergenic | up |  |  | chr5 | - | 106793579 | 106795868 | NM_018759 | Zfp326 | zinc finger protein 326 | positive regulation of transcription, DNA-dependent; regulation of DNA-dependent transcription, elongation
AK006720 | intergenic | up |  |  | chr7 | + | 13366208 | 13366951 | NM_026046 | Zfp329 | zinc finger protein 329 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK016813 | intergenic | up | up | positive | chr11 | - | 50754215 | 50757243 | NM_013744 | Zfp354b | zinc finger protein 354B | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK076976 | intergenic | up |  |  | chr13 | - | 66604095 | 66620459 | NM_178364 | Zfp369 | zinc finger protein 369 | transcription, DNA-dependent
AB160648 | intergenic | up |  |  | chr12 | - | 116861371 | 116861665 | NM_001004066 | Zfp386 | zinc finger protein 386 | regulation of transcription, DNA-dependent
AK028094 | intergenic | up | down | negtive | chr14 | + | 65945167 | 65956441 | NM_199029 | Zfp395 | zinc finger protein 395 | DNA binding
AK007095 | intergenic | up |  |  | chr8 | - | 90159997 | 90166082 | NM_033327 | Zfp423 | zinc finger protein 423 | positive regulation of transcription, DNA-dependent
AK005539 | intergenic | up | down | negtive | chrX | + | 53570830 | 53573841 | NM_030139 | Zfp449 | zinc finger protein 449 | transcription, DNA-dependent
AK033415 | intergenic | down |  |  | chr5 | + | 146053638 | 146055877 | NM_001081431 | Zfp498 | zinc finger protein 498 | transcription, DNA-dependent
AK012226 | intergenic | up | down | negtive | chr14 | + | 23403627 | 23418490 | NM_145459 | [NAME] | zinc finger protein 503 | regulation of transcription, DNA-dependent; transcription, DNA-dependent
AK015588 | bidirectional | up |  |  | chr5 | - | 31753591 | 31754704 | NM_172993 | Zfp512 | zinc finger protein 512 | regulation of transcription, DNA-dependent
AK016386 | intronic antisense | up |  |  | chr18 | - | 83089331 | 83089940 | NM_183033 | Zfp516 | zinc finger protein 516 | regulation of transcription, DNA-dependent
AK087313 | intergenic | up |  |  | chr19 | + | 40942805 | 40957129 | NM_028319 | Zfp518a | zinc finger protein 518A | regulation of transcription, DNA-dependent
AK015173 | intergenic | up | down | negtive | chr5 | + | 38966091 | 38967007 | NM_001081144 | Zfp518b | zinc finger protein 518B | zinc ion binding
AK008102 | intergenic | down | up | negtive | chr7 | + | 16633793 | 16634404 | NM_001099277 | Zfp541 | zinc finger protein 541 | regulation of transcription, DNA-dependent
AK011173 | bidirectional | down | down | positive | chr7 | - | 134375931 | 134376644 | NM_146201 | Zfp553 | zinc finger protein 553 | regulation of transcription, DNA-dependent
BC039874 | exonic antisense | up | up | positive | chr7 | - | 25866550 | 25867499 | NM_175477 | Zfp574 | zinc finger protein 574 | regulation of transcription, DNA-dependent
AK076965 | intergenic | up | down | negtive | chr7 | + | 28554249 | 28556809 | [NAME] | [NAME] | zinc finger protein 59 | regulation of transcription, DNA-dependent
AK016610 | intergenic | up | down | negtive | chr7 | + | 47930106 | 47946630 | NM_001004139 | Zfp619 | zinc finger protein 619 | regulation of transcription, DNA-dependent
AK035492 | intergenic | down | down | positive | chr2 | - | 169449555 | 169453818 | NM_009564 | Zfp64 | zinc finger protein 64 | nucleic acid binding
AK006714 | intronic antisense | up | up | positive | chr11 | + | 58136489 | 58137941 | NM_178761 | Zfp672 | zinc finger protein 672 | regulation of transcription, DNA-dependent
AK041042 | exonic antisense | up |  |  | chr7 | + | 134592149 | 134600699 | NM_175163 | Zfp689 | zinc finger protein 689 | regulation of transcription, DNA-dependent
AK041843 | intergenic | down |  |  | chr13 | - | 67206316 | 67209540 | NM_001012325 | Zfp708 | zinc finger protein 708 | regulation of transcription, DNA-dependent
AK041843 | intergenic | down |  |  | chr13 | - | 67206316 | 67209540 | NM_172392 | Zfp759 | zinc finger protein 759 | regulation of transcription, DNA-dependent
NR_004441 | intergenic | up | down | negtive | chr7 | + | 48923383 | 48982563 | NM_023363 | Zfp788 | zinc finger protein 788 | nucleic acid binding
AK028267 | exonic sense | down | down | positive | chr8 | + | 81552119 | 81552364 | NM_178267 | Zfp827 | zinc finger protein 827 | regulation of transcription, DNA-dependent
AK162599 | intergenic | down | down | positive | chr8 | - | 71904238 | 71919427 | NM_172754 | Zfp868 | zinc finger protein 868 | regulation of transcription, DNA-dependent
AK020829 | intergenic | up | down | negtive | chr8 | - | 108929521 | 108930429 | NM_011764 | Zfp90 | zinc finger protein 90 | positive regulation of transcription, DNA-dependent
AK164331 | intergenic | down | down | positive | chr17 | + | 17431406 | 17455068 | NM_011765 | Zfp97 | zinc finger protein 97 | regulation of transcription, DNA-dependent
BC084590 | intergenic | down | down | positive | chrX | + | 91213997 | 91220809 | NM_001044386 | Zfx | zinc finger protein X-linked | regulation of transcription, DNA-dependent
BC048765 | intergenic | up |  |  | chr15 | + | 39994152 | 39999619 | NM_011766 | Zfpm2 | zinc finger protein, multitype 2 | negative regulation of transcription from RNA polymerase II promoter;positive regulation of transcription from RNA polymerase II promoter
AK031079 | intergenic | up |  |  | chr7 | - | 132427538 | 132481786 | NM_001081329 | Zkscan2 | zinc finger with KRAB and SCAN domains 2 | transcription, DNA-dependent
AK003710 | intergenic | down | down | positive | chr7 | - | 6623979 | 6625599 | NM_011769 | Zim1 | zinc finger, imprinted 1 | regulation of transcription, DNA-dependent
D10920 | intergenic | down |  |  | chr4 | + | 62796041 | 62800121 | NM_028326 | Zfp618 | zinc fingerprotein 618 | nucleic acid binding