Spreadsheet: d62bd291-f2b0-494d-81a6-89e9d17f5777
Sheet: Sheet1

Unnamed: 0 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9
Table S7. Summary of Regions ranked by [NAME] (fastPHASEd-CEU vs. [NAME])
Chr. | Start | End | Genes in region | Allelea | Number of Core SNPs with p-Value < 0.005 | Minimum Median XDiHHb | [NAME] | HapMap Population for which Positive Selection was Reportedd | Test used to identify in previous studyd
20 | 20501512 | 20721335 | C20orf74,EIF4E2P1 | A | 11 | -2.9647 | 1
18 | 31441338 | 31574690 | GALNT1 | D | 8 | -1.3728 | 1 | ASN | LRH
17 | 40813669 | 42276896 | ARHGAP27,ARL17,C17orf69,CRHR1,IMP5,KIAA1267,LOC100128977,LOC100130148,LOC100131650,LOC100132570,LOC201175,LOC644157,LOC644172,LOC644191,LOC644253,LOC644256,LOC644315,LOC644354,LOC644366,LOC728806,LOC729008,LRRC37A,LRRC37A2,LRRC37A4,MAPT,MGC57346,NR_002940.1,NSF,PLEKHM1,STH,[NAME] | D | 181 | -1.1599 | 7 | CEU | REF
15 | 62236892 | 62752868 | CSNK1G1,GAPDHL6,KIAA0101,LOC100128564,LOC644934,PPIB,TRIP4,ZNF609 | D | 9 | -0.986 | 9 | ASN | IHS
22 | 28730861 | 28999993 | HORMAD2,LIF,LOC646467,LOC729980,MTMR3,OSM,[NAME] | D | 20 | -0.9811 | 10 | CEU | Rsb-CE
17 | 40705665 | 42313021 | ARHGAP27,ARL17,C17orf69,CRHR1,IMP5,KIAA1267,LOC100128977,LOC100130148,LOC100131650,LOC100132570,LOC201175,LOC644157,LOC644172,LOC644191,LOC644253,LOC644256,LOC644315,LOC644354,LOC644366,LOC728806,LOC729008,LRRC37A,LRRC37A2,LRRC37A4,MAP3K14,MAPT,MGC57346,NR_002940.1,NSF,PLEKHM1,STH,WNT3,WNT9B,[NAME] | A | 205 | -1.4419 | 11 | CEU | REF
1 | 210057165 | 210412712 | DTL,INTS7,LOC100131205,LPGAT1 | D | 12 | -0.9597 | 20
13 | 29009750 | 29085009 | [NAME] | D | 7 | -0.7032 | 56
4 | 171855888 | 172096692 |  | D | 6 | -0.7005 | 59 | ASN, CEU | LRH, Rsb-AE
1 | 61164121 | 61469154 | NFIA | D | 25 | -0.6754 | 67
2 | 21651923 | 21842904 | [NAME] | A | 16 | -0.7918 | 75
2 | 121791241 | 122291321 | [NAME],TSN,[NAME] | D | 12 | -0.6457 | 80
12 | 89787719 | 90231531 | C12orf12,C12orf37,DCN,EPYC,KERA,[NAME],[NAME] | D | 47 | -0.6096 | 95
5 | 39618799 | 39760318 | LOC100129040,LOC285634,XR_017261.1 | D | 11 | -0.5926 | 103
18 | 28716645 | 28995489 | C18orf34 | A | 10 | -0.5953 | 138 | YRI | LRH
5 | 4854119 | 4933927 |  | A | 6 | -0.521 | 173 | ASN | Rsb-AC
10 | 111378675 | 111636137 | LOC100132843,RNU4P5,XPNPEP1,XR_037957.1 | D | 39 | -0.5173 | 190
6 | 39446413 | 39713992 | KIF6,LOC100131899 | A | 16 | -0.4578 | 196
6 | 31902571 | 32405288 | AGER,AGPAT1,C2,C4A,C4B,[NAME],[NAME],CYP21A2,DOM3Z,EGFL8,EHMT2,FKBPL,GPSM3,HSPA1B,LOC100128067,LOC100130536,LOC100131609,NEU1,NOTCH4,NR_001284.1,NR_002742.1,NR_002745.1,PBX2,PPT2,PRRT1,RDBP,RNF5,SKIV2L,SLC44A4,SNORD48,SNORD52,STK19,STK19P,TNXA,TNXB,XR_039222.1,ZBTB12 | D | 18 | -0.5012 | 200 | ASN, CEU, YRI | IHS, LRH, Rsb-AC, Rsb-AE, Rsb-CE, XP-EHH
10 | 110913811 | 111690912 | LOC100130409,LOC100132843,LOC645318,RNU4P5,XPNPEP1,XR_037957.1 | A | 132 | -0.4416 | 203
3 | 162016919 | 162188294 | PPM1L | D | 13 | -0.4862 | 206 | CEU | Rsb-AE
10 | 110966219 | 111132844 |  | D | 30 | -0.4769 | 211
12 | 80400860 | 80688174 | [NAME] | D | 16 | -0.4765 | 215
1 | 236254133 | 236363914 |  | D | 4 | -0.4677 | 221
6 | 28095755 | 28417115 | LOC100129195,LOC222699,LOC222701,NKAPL,NR_002936.1,OR1F12P,OR2B7P,OR2B8P,OR2W2P,PGBD1,TRNAS-GCU,[NAME] | D | 19 | -0.4517 | 231
7 | 19444366 | 19500361 |  | A | 5 | -0.409 | 235
12 | 65789062 | 65916053 |  | A | 9 | -0.3645 | 251
21 | 29458624 | 29599943 | BACH1,C21orf7 | D | 9 | -0.4411 | 251
14 | 66234513 | 66845445 | FAM71D,GPHN,MPP5,SF3B4P | A | 22 | -0.3629 | 255
6 | 86187875 | 86896655 | LOC100127905,LOC100127917,LOC100133102,LOC643870,LOC643906,NR_002743.2,NR_003038.2,NR_003044.3,NT5E,SNHG5,SNORD50A,SNORD50B,SNX14,SYNCRIP | D | 28 | -0.4317 | 271
6 | 29873026 | 31353715 | 3.8-1.2,3.8-1.3,ABCF1,C6orf134,C6orf136,C6orf15,C6orf205,CCHCR1,CDSN,DDR1,DHX16,DPCR1,ETF1P1,FLJ45422,FLOT1,GNL1,GTF2H4,HCG22,HCG27,HCG2P6,HCG2P7,HCG4P3,HCG4P4,HCG4P5,HCG4P6,HCG4P9,HCG9,HCP5P10,HCP5P2,HCP5P3,HCP5P6,HLA-A,HLA-C,HLA-E,HLA-G,HLA-H,HLA-J,HLA-K,HLA-L,HLA-U,HLA-W,IER3,KIAA1949,LOC100129065,LOC100129192,LOC100129610,LOC100129772,LOC100130889,LOC100133037,LOC100133214,LOC100133303,LOC646520,LOC729792,MDC1,MICC,MICD,MICG,MIRN877,MRPS18B,NRM,NR_001317.1,NR_001318.1,NR_001434.1,NR_003948.1,P5-04,P5-05,P5.8,POU5F1,PPP1R10,PPP1R11,PRR3,PSORS1C1,PSORS1C2,PTMAP1,RANP1,RNF39,RPL7AP7,RPP21,SFTPG,TCF19,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM40,TUBB,VARS2,ZNRD1 | A | 408 | -0.3383 | 272 | ASN | LRH, Rsb-AC
12 | 86983796 | 87785702 | CEP290,KITLG,[NAME] | D | 57 | -0.4299 | 275
9 | 125463161 | 125725430 | DENND1A | D | 12 | -0.4251 | 289
8 | 34142036 | 34404799 | LOC137107 | D | 27 | -0.4232 | 299
7 | 86419681 | 86575011 | [NAME] | A | 17 | -0.3077 | 320
5 | 52458392 | 52552521 | LOC402214 | D | 14 | -0.4211 | 320
17 | 43362028 | 43607501 | ATAD4,CBX1,CDK5RAP3,COPZ2,LOC100129841,LOC100132033,NFE2L1,PNPO,SKAP1,SNX11 | D | 14 | -0.4203 | 324
10 | 60548195 | 60743620 | FAM13C1,LOC644871,PHYHIPL | A | 5 | -0.3 | 339 | CEU | LRH
8 | 52977321 | 53078935 |  | A | 7 | -0.2994 | 341 | CEU | LRH, Rsb-AE
6 | 26419300 | 27004868 | [NAME],TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-CGC,TRNAI-AAU,TRNAI-AAU,TRNAI-AAU,TRNAI-AAU,TRNAK-CUU,TRNAL-CAG,[NAME],[NAME],[NAME],[NAME],[NAME],[NAME],TRNAP-AGG,TRNAQ-UUG,TRNAQ-UUG,TRNAR-ACG,TRNAR-UCG,TRNAR2,TRNAS-AGA,TRNAS-UGA,TRNAT-AGU,TRNAV-CAC,TRNAW-CCA,TRNAW-CCA,TRNAY-GUA,TRNAY-GUA,TRNAY-GUA,TRNAY-GUA,XR_015530.2,XR_015532.2,ZNF322A | A | 68 | -0.2901 | 350
6 | 29344624 | 29491373 | LOC442192,OR12D2,OR12D3,OR2B4P,OR2U2P,OR5U1,OR5V1 | D | 3 | -0.4117 | 354
10 | 122702934 | 122858160 |  | D | 18 | -0.4081 | 355
6 | 32444139 | 32703061 | BTNL2,C6orf10,HLA-DRA,HLA-DRB1,HLA-DRB5,HLA-DRB6,HLA-DRB9,NR_001298.1 | D | 26 | -0.4063 | 357
10 | 107012372 | 107155608 | SORCS3 | A | 9 | -0.2826 | 358
2 | 143032009 | 143193206 |  | A | 10 | -0.2796 | 362
14 | 47760979 | 47959934 |  | D | 9 | -0.4019 | 368 | YRI | LRH
6 | 30167571 | 30704114 | ABCF1,C6orf134,FLJ45422,GNL1,HLA-E,HLA-L,LOC100129192,LOC100129772,LOC100133303,LOC646520,MICC,MIRN877,MRPS18B,PPP1R10,PRR3,RANP1,RPP21,TRIM10,TRIM15,TRIM26,TRIM31,TRIM39,TRIM40 | D | 105 | -0.4013 | 371
14 | 65963473 | 66146903 | GPHN,[NAME] | A | 1 | -0.2788 | 372
12 | 110822922 | 111462160 | ADAM1,C12orf30,C12orf51,ERP29,LOC100128618,LOC100133013,LOC724085,LOC728543,LOC728585,PTPN11,RPL6,TMEM116,TRAFD1,XR_041706.1 | A | 26 | -0.2783 | 373 | CEU, ASN | Rsb-AC, XP-EHH
6 | 31377152 | 32041497 | 3.8-1,AIF1,APOM,[NAME],CLIC1,CSNK2B,DDAH2,EHMT2,HCP5,HLA-B,HSPA1A,[NAME],HSPA1L,LOC100128067,LOC100129668,LOC100129921,LOC100130756,LOC729816,LSM2,LST1,LTA,LTB,LY6G5B,LY6G5C,LY6G6C,LY6G6D,LY6G6E,MCCD1,MICB,MSH5,NCR3,NEU1,NFKBIL1,NR_002742.1,NR_002745.1,NR_002812.2,NR_002971.1,NR_003065.1,NR_003140.1,NR_003673.1,PPIAP9,RDBP,SKIV2L,SLC44A4,SNORA38,SNORD117,SNORD48,SNORD52,SNORD84,TNF,VARS,XR_042352.1,ZBTB12 | A | 92 | -0.276 | 386 | ASN, CEU, YRI | IHS, LRH, Rsb-AC, Rsb-AE, Rsb-CE, XP-EHH
20 | 40500986 | 40640779 | PTPRT | D | 15 | -0.3937 | 397
1 | 209415258 | 209745570 | C1orf97,LOC388734,LOC391160,RCOR3,RD3,TRAF5,XR_016582.1,XR_040057.1 | D | 10 | -0.3885 | 403 | ASN, CEU | IHS, LRH, Rsb-CE
4 | 60932476 | 61087794 |  | A | 15 | -0.2729 | 404 | CEU | Rsb-AE, Rsb-CE
19 | 49424675 | 49670293 | LOC100131388,MRPS15P2,XR_016906.2,ZNF227,ZNF228,ZNF229,ZNF233,ZNF235,ZNF285A,ZNF285B | D | 26 | -0.3864 | 407
3 | 40643753 | 40810196 | LOC729505,RPS27P4 | A | 3 | -0.2708 | 413
6 | 32820362 | 32910181 | HLA-DOB,HLA-DQA2,HLA-DQB2,NR_003937.1,TAP2 | D | 30 | -0.3849 | 414
13 | 96569608 | 96700736 | MBNL2 | D | 3 | -0.381 | 420
2 | 195085585 | 195462102 |  | D | 12 | -0.378 | 429
6 | 30990492 | 31374096 | C6orf15,C6orf205,CCHCR1,CDSN,[NAME],LOC100129065,LOC100129610,LOC100130889,LOC729792,NR_003948.1,POU5F1,PSORS1C1,PSORS1C2,SFTPG,TCF19,VARS2 | D | 118 | -0.3767 | 452 | ASN | LRH, Rsb-AC
6 | 28078010 | 28221352 | LOC100129195,LOC340192,OR1F12P,OR2B7P,OR2B8P,OR2W2P,[NAME] | A | 6 | -0.2533 | 462
14 | 65795528 | 65939190 |  | A | 4 | -0.2528 | 470
13 | 59326045 | 59485089 | DIAPH3 | D | 1 | -0.3613 | 492
6 | 30735846 | 30965521 | DDR1,DHX16,FLOT1,IER3,KIAA1949,LOC100133037,MDC1,NRM,TUBB | D | 28 | -0.3612 | 493
6 | 15953776 | 16072278 | LOC441131,XR_016719.2 | D | 7 | -0.3569 | 503
7 | 68870802 | 68986063 | AUTS2 | D | 1 | -0.3514 | 540
14 | 83578368 | 83741791 |  | D | 8 | -0.3505 | 542
12 | 57633290 | 57752693 | LOC100129227,LOC644915 | D | 8 | -0.3479 | 552
1 | 40879826 | 41002801 | LOC100130557,MIRN30C1,MIRN30E,NFYC,RIMS3 | D | 4 | -0.345 | 554
12 | 78046755 | 78245444 | SYT1 | A | 11 | -0.2409 | 562 | YRI | IHS, LRH
10 | 118092076 | 118245100 | C10orf96,LOC100131273,LOC100131776,PNLIPRP3 | D | 6 | -0.3428 | 569
6 | 7771798 | 7841490 | BMP6,TXNDC5 | D | 5 | -0.337 | 585
4 | 151691113 | 152232551 | LOC649288,LOC729558,LOC729566,LRBA,MAB21L2,XR_039909.1 | D | 10 | -0.3358 | 593
18 | 24679449 | 24923897 |  | A | 13 | -0.2351 | 601
3 | 121010450 | 121389934 | GPR156,GSK3B,LOC100129275,LOC100129707,NR1I2,XR_038954.1 | A | 10 | -0.2347 | 606
6 | 28859706 | 29054899 | C6orf100,KRT18P1,LOC401242,NOL5BP,TRIM27,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-AGC,TRNAA-UGC,TRNAA-UGC,TRNAA1,TRNAF-GAA,TRNAF-GAA,TRNAF-GAA,TRNAK-UUU,TRNAL-AAG,TRNAL-CAA,TRNAL-CAA,[NAME],[NAME],TRNAQ-CUG,TRNAR-CCG,XR_017915.1,XR_039921.1 | A | 4 | -0.2312 | 618
9 | 92986040 | 93220448 | AUH,NFIL3 | D | 13 | -0.3304 | 620
14 | 83435164 | 83685567 |  | A | 27 | -0.2291 | 634
8 | 79229280 | 79410221 |  | D | 1 | -0.3283 | 634
10 | 91439976 | 91582178 | FLJ37201,LOC643529,MPHOSPH1,XR_041092.1,XR_041963.1 | D | 10 | -0.3275 | 636
7 | 86734504 | 86883520 | ABCB4,CROT | D | 1 | -0.3251 | 656
11 | 14115507 | 14462538 | COPB1,LOC401676,RRAS2,SPON1,XR_016830.2 | A | 25 | -0.2233 | 659
6 | 140214263 | 140718454 | LOC100132735,LOC729070 | D | 31 | -0.3237 | 659
2 | 39270360 | 39459421 | CDKL4,MAP4K3 | D | 6 | -0.3229 | 667
6 | 31374501 | 31582667 | 3.8-1,HCP5,HLA-B,LOC100129668,LOC729816,MICB,NR_002812.2,XR_042352.1 | D | 45 | -0.3215 | 684
2 | 49036913 | 49098912 | FSHR | A | 4 | -0.2182 | 687
18 | 30374559 | 30495895 | DTNA,[NAME] | D | 12 | -0.3213 | 687
6 | 29984938 | 30076254 | 3.8-1.2,3.8-1.3,HCG2P6,HCG4P4,HCG4P5,HCG4P6,HCG9,HCP5P3,HCP5P6,HLA-A,HLA-K,HLA-U,HLA-W,MICD,NR_001317.1,P5-04,P5-05,P5.8 | D | 15 | -0.3187 | 701
21 | 25747994 | 25996876 | FDXP2,JAM2,MIRN155,MRPL39 | D | 20 | -0.3182 | 705
12 | 74439702 | 74606596 |  | D | 13 | -0.318 | 707
6 | 25838006 | 26325707 | HFE,HIST1H1A,HIST1H1C,HIST1H1E,HIST1H1PS2,HIST1H1T,HIST1H2AB,HIST1H2AC,HIST1H2AD,HIST1H2AE,HIST1H2APS2,HIST1H2APS5,HIST1H2BB,HIST1H2BC,HIST1H2BD,[NAME],[NAME],[NAME],HIST1H3A,[NAME],HIST1H3C,HIST1H3D,HIST1H4A,HIST1H4B,HIST1H4C,HIST1H4D,HIST1H4E,LOC100129474,SLC17A1,SLC17A2,SLC17A3,SLC17A4,TRIM38 | A | 62 | -0.2135 | 712 | CEU | Rsb-AE
16 | 13259683 | 13402745 |  | D | 17 | -0.3146 | 721
3 | 25195916 | 25295115 |  | A | 3 | -0.2099 | 730
8 | 32638301 | 32724930 | NRG1 | D | 7 | -0.3109 | 740
12 | 60825121 | 61354397 | C12orf61,FAM19A2,LOC100133321,MIRNLET7I,MON2,PPM1H,USP15 | A | 45 | -0.2074 | 742
6 | 29920009 | 29949000 | HCP5P10 | D | 9 | -0.3098 | 742
1 | 57191814 | 57296689 | C8B,DAB1 | D | 9 | -0.3077 | 749
18 | 31579930 | 31687814 | LOC648532 | D | 2 | -0.3077 | 749
6 | 118982785 | 119172058 | C6orf204,PLN,psiSSX10 | A | 18 | -0.2066 | 750
14 | 95103280 | 95158512 |  | D | 8 | -0.3039 | 758
6 | 128717601 | 128982944 | EEF1DP5,PTPRK | D | 8 | -0.3008 | 767
2 | 205765894 | 205826729 | PARD3B | A | 3 | -0.2041 | 782
5 | 147368427 | 147432404 | SPINK5 | D | 6 | -0.2988 | 783
5 | 110888019 | 111084625 |  | D | 23 | -0.2983 | 792 | CEU | Rsb-AE
4 | 18795920 | 18928063 |  | D | 11 | -0.2975 | 800
2 | 137102451 | 137716696 | [NAME] | A | 111 | -0.2034 | 804
11 | 90106033 | 90240292 |  | A | 8 | -0.2017 | 813
3 | 121389934 | 121636871 | FSTL1,GPR156,LOC100130701,LOC442087,LRRC58,MIRN198 | D | 16 | -0.2939 | 831
14 | 65864678 | 66552316 | GPHN,[NAME] | D | 26 | -0.2916 | 839
8 | 73651827 | 73762984 | [NAME] | A | 7 | -0.1996 | 840
3 | 129422916 | 129550131 | EEFSEC | A | 9 | -0.1987 | 848
11 | 84684619 | 84968560 |  | A | 3 | -0.1979 | 859
16 | 82212307 | 82313739 | CDH13 | A | 35 | -0.1969 | 863 | ASN | Rsb-AC, Rsb-CE
10 | 58683094 | 58765982 |  | D | 1 | -0.2899 | 869 | ASN | Rsb-AC
10 | 70242013 | 70432918 | DDX21,DDX50,KIAA1279,STOX1 | A | 3 | -0.1943 | 881
13 | 84530015 | 84714275 |  | A | 8 | -0.194 | 890
1 | 181438828 | 181503475 | LAMC2,NMNAT2 | A | 2 | -0.1923 | 909
1 | 184456628 | 184508361 |  | A | 4 | -0.1913 | 927
10 | 100308426 | 100334126 | HPSE2 | D | 4 | -0.2833 | 927
22 | 28934102 | 29198102 | KIAA1656,LIF,LOC550631,LOC646513,LOC652968,LOC729980,MTP18,OSM,RNF215,SEC14L2,SEC14L3,SF3A1,TBC1D10A,XR_040414.1 | A | 19 | -0.1912 | 931 | CEU | Rsb-CE
10 | 106823961 | 106878097 | SORCS3 | A | 1 | -0.1911 | 934
6 | 25855387 | 26020795 | HIST1H2APS2,SLC17A1,SLC17A3,SLC17A4 | D | 5 | -0.2807 | 944
6 | 29833274 | 29897150 | 3.8-1.5,HCG4,HCG4P10,HCG4P9,HCP5P13,HCP5P14,MICG,NR_002139.1,RPL7AP7 | D | 5 | -0.2807 | 944
3 | 140873503 | 141111046 | NMNAT3 | A | 31 | -0.1883 | 956
13 | 78105589 | 78251982 | C13orf7 | D | 3 | -0.2791 | 956
12 | 110731337 | 111476215 | ADAM1,ALDH2,C12orf30,C12orf51,ERP29,LOC100128618,LOC100133013,LOC724085,LOC728543,LOC728585,MAPKAPK5,PTPN11,RPL6,TMEM116,TRAFD1,XR_041706.1 | D | 20 | -0.278 | 962 | CEU, ASN | Rsb-AC, XP-EHH
2 | 113450878 | 113552819 | IL1F10,IL1F5,IL1F6,IL1F8,IL1F9,LOC442042 | D | 8 | -0.2774 | 966 | CEU | Rsb-AE
12 | 60822541 | 61223615 | FAM19A2,LOC100133321,MON2,USP15 | D | 21 | -0.2773 | 971
10 | 132161162 | 132209429 |  | D | 3 | -0.2771 | 979
11 | 120504468 | 120597608 | TECTA | D | 11 | -0.2758 | 983
5 | 87136020 | 87542893 | TMEM161B | D | 25 | -0.2717 | 1003
6 | 7683958 | 7792927 | [NAME] | A | 16 | -0.1843 | 1006
9 | 119455831 | 119525616 | TLR4 | D | 2 | -0.2715 | 1006
4 | 60654547 | 60887774 |  | A | 9 | -0.1836 | 1010 | CEU | Rsb-AE, Rsb-CE
7 | 3597641 | 3700196 | [NAME] | A | 11 | -0.1835 | 1012
6 | 29730199 | 29832180 | [NAME],IFITM4P,MOG,NR_001590.1,RPL23AP1,XR_039877.1,ZFP57 | A | 41 | -0.1833 | 1017
12 | 86171734 | 86351732 |  | D | 12 | -0.2707 | 1031
10 | 104341607 | 104641045 | ARL3,AS3MT,[NAME],TRIM8 | A | 32 | -0.1812 | 1058
3 | 43670272 | 43838380 | ABHD5 | D | 8 | -0.2662 | 1062 | ASN | Rsb-AC
7 | 38661654 | 38784656 | KRT8P20,LOC340286,VPS41 | D | 4 | -0.2659 | 1073
16 | 9429761 | 9546629 |  | D | 15 | -0.2654 | 1077
1 | 213292133 | 213429084 | KCNK2 | D | 12 | -0.2638 | 1089 | CEU | Rsb-AE
2 | 46212583 | 46261432 | PRKCE | D | 1 | -0.2631 | 1101
13 | 84414982 | 84504847 |  | A | 11 | -0.1754 | 1109
5 | 104360332 | 104556044 | NR_000039.1,RAB9P1 | A | 2 | -0.1748 | 1122
6 | 99418131 | 99637033 | FBXL4 | A | 32 | -0.1747 | 1124
2 | 66055235 | 66089750 |  | A | 1 | -0.1737 | 1134
12 | 73018181 | 73117376 |  | D | 8 | -0.2601 | 1138
10 | 106826489 | 106962089 | SORCS3 | D | 17 | -0.2591 | 1149
2 | 195308914 | 195516435 |  | A | 4 | -0.1718 | 1151
14 | 65531731 | 65588328 | LOC729850,YBX1P1 | D | 4 | -0.259 | 1152
14 | 23973124 | 24022286 | C14orf124,KIAA0323 | A | 1 | -0.171 | 1161
10 | 86347511 | 86457507 |  | D | 11 | -0.2565 | 1165
6 | 85171600 | 85317123 | LOC442233 | A | 12 | -0.1705 | 1167
4 | 12485061 | 12619085 |  | D | 19 | -0.2559 | 1192
6 | 112111819 | 112226674 | FYN | D | 7 | -0.2558 | 1193
18 | 27412159 | 27632536 | B4GALT6,LOC390846,LOC646778,MCART2,TTR,XR_041105.1 | D | 10 | -0.2557 | 1197
18 | 28104294 | 28206102 | FAM59A | D | 1 | -0.2557 | 1197
15 | 77588568 | 77606077 |  | A | 1 | -0.1686 | 1202
9 | 26798068 | 27001367 | C9orf82,IFT74,LRRC19,PLAA | D | 2 | -0.255 | 1215
20 | 43044644 | 43174937 | KCNS1,STK4,WFDC5 | A | 2 | -0.1677 | 1217
15 | 59663365 | 59738402 |  | D | 8 | -0.2548 | 1217
16 | 10125491 | 10189868 | GRIN2A | A | 20 | -0.1674 | 1225
6 | 118721636 | 119139366 | BRD7P3,C6orf204,LOC644303,PLN,psiSSX10,SLC35F1 | D | 39 | -0.2537 | 1225
4 | 166332318 | 166610257 | CPE,GK3P,HADHAP,KLHL2,MIRN578,SC4MOL | A | 29 | -0.1672 | 1229
5 | 54405988 | 54514773 | CDC20B,GZMA,LOC493869,MIRN449A,MIRN449B | A | 2 | -0.1668 | 1233
2 | 81832332 | 81944457 |  | A | 14 | -0.1651 | 1262
9 | 15802396 | 15945666 | C9orf93 | D | 7 | -0.2517 | 1269
2 | 81900021 | 82045728 |  | D | 2 | -0.2515 | 1276
1 | 222405623 | 222636544 | CNIH4,DEGS1,FBXO28,LOC724084,NVL | A | 7 | -0.1637 | 1284
16 | 20695685 | 20838648 | ACSM3,DCUN1D3,EXOD1,LOC81691,LYRM1 | A | 7 | -0.1635 | 1288
7 | 69218189 | 69505395 | AUTS2 | A | 3 | -0.1632 | 1293
2 | 139720040 | 139803964 |  | D | 1 | -0.2503 | 1302
4 | 119233042 | 119374677 | LOC100132656,NDST3,XR_039330.1 | A | 6 | -0.1623 | 1316
2 | 189884587 | 190081360 | KRT18P19,WDR75,XR_016833.2 | D | 4 | -0.2474 | 1336
2 | 223608748 | 223718488 | KCNE4 | A | 4 | -0.1603 | 1346
9 | 119787395 | 119907892 | LOC389787 | A | 2 | -0.1602 | 1351
11 | 84399900 | 84515546 |  | A | 19 | -0.1601 | 1353
12 | 13677119 | 13748704 | GRIN2B | D | 6 | -0.2449 | 1358
16 | 78532049 | 78611417 |  | A | 11 | -0.1599 | 1360
6 | 130939244 | 131086283 |  | D | 4 | -0.2448 | 1362
11 | 13860364 | 13923798 |  | D | 6 | -0.2439 | 1378
3 | 59616105 | 59666765 | LOC339902,XR_041475.1 | D | 3 | -0.2437 | 1379
11 | 14086203 | 14390710 | LOC401676,RRAS2,SPON1,XR_016830.2 | D | 29 | -0.2434 | 1385
14 | 98060029 | 98123009 |  | D | 8 | -0.2433 | 1387
11 | 90043760 | 90139758 |  | D | 3 | -0.2429 | 1401
16 | 20838648 | 20999552 | DNAH3,LYRM1 | D | 4 | -0.2427 | 1409
12 | 80092004 | 80268068 | ACSS3,PPFIA2 | A | 1 | -0.158 | 1422
7 | 123793976 | 123941687 | LOC136157,LOC392781 | D | 2 | -0.2405 | 1439
13 | 71490343 | 71566635 |  | D | 7 | -0.2394 | 1447
7 | 88901272 | 89126289 |  | A | 15 | -0.1561 | 1464
6 | 98612545 | 98820713 |  | D | 4 | -0.2381 | 1483
6 | 38255888 | 38329617 | BTBD9 | D | 1 | -0.2379 | 1486
10 | 26145047 | 26198131 |  | D | 3 | -0.237 | 1492
11 | 89853672 | 90003224 |  | A | 27 | -0.1553 | 1515
1 | 20783991 | 20893785 | CDA,DDOST,KIF17,PINK1 | D | 9 | -0.2369 | 1521
12 | 27001290 | 27240595 | FGFR1OP2,LOC100129639,LOC728858,LOC729222,MED21,TM7SF3,XR_015484.2 | D | 21 | -0.2364 | 1522
6 | 29450754 | 29683435 | GABBR1,GPR53P,LOC442195,LOC729653,MAS1L,NR_003049.1,OR10C1,OR11A1,OR12D1P,OR12D2,OR12D3,OR2H1,OR2H2,OR2H5P,OR2I1P,SNORD32B,UBD | A | 25 | -0.154 | 1542
11 | 119153668 | 119251677 | LOC390255 | D | 6 | -0.2351 | 1544
6 | 140903491 | 141286061 |  | A | 11 | -0.1536 | 1554
12 | 112831009 | 112885556 | RBM19 | A | 4 | -0.1532 | 1567
6 | 145119658 | 145246661 | UTRN | D | 2 | -0.2345 | 1569 | CEU | Rsb-AE
20 | 23679412 | 23770776 | CST1,CST2,CSTP2 | D | 2 | -0.2344 | 1571 | CEU | Rsb-AE
11 | 85164514 | 85333822 | CCDC83,LOC100131457,LOC646261 | A | 3 | -0.1522 | 1588
5 | 166970512 | 167129127 | ODZ2 | D | 4 | -0.2335 | 1588
9 | 131717283 | 131904133 | [NAME] | A | 4 | -0.1521 | 1597
5 | 127888786 | 128011704 | FBN2 | A | 13 | -0.1518 | 1608 | ASN | Rsb-CE
8 | 119942452 | 120044851 | TNFRSF11B | D | 4 | -0.2313 | 1608
10 | 53883556 | 53970339 |  | D | 1 | -0.2311 | 1611
3 | 61964985 | 62007656 | PTPRG | D | 1 | -0.2309 | 1614
1 | 77737443 | 78049565 | AK5,FAM73A,LOC100131291,LOC653631,USP33,ZZZ3 | D | 6 | -0.2298 | 1634
4 | 32555448 | 32826402 | LOC642305,XR_042368.1 | A | 4 | -0.151 | 1647
6 | 80999622 | 81096825 | BCKDHB | D | 6 | -0.229 | 1650
3 | 140873858 | 140976391 | NMNAT3 | D | 10 | -0.2288 | 1658
13 | 38424592 | 38494403 | C13orf23,STOML3 | D | 4 | -0.2288 | 1658
4 | 86455958 | 86530808 |  | A | 3 | -0.1506 | 1659
3 | 180162445 | 180445591 | KCNMB3,PIK3CA,[NAME] | A | 4 | -0.1503 | 1666
1 | 85848657 | 86154428 | C1orf181,COL24A1 | D | 19 | -0.2275 | 1681
1 | 88682792 | 88784725 |  | D | 2 | -0.2273 | 1700
3 | 177146513 | 177346904 | LOC100129423,LOC100131216,LOC442097 | A | 3 | -0.1492 | 1703
22 | 31319141 | 31396430 | SYN3 | D | 2 | -0.2262 | 1710
15 | 50149195 | 50319233 | [NAME],XR_039656.1 | D | 1 | -0.2259 | 1717 | CEU | Rsb-AE, Rsb-CE
9 | 37019569 | 37200264 | LOC100128004,LOC100130458,PAX5,ZCCHC7 | A | 5 | -0.1472 | 1751
4 | 9786700 | 9865035 | LOC100129344 | A | 9 | -0.147 | 1758
7 | 7442861 | 7601461 | COL28A1,FLJ20323 | A | 2 | -0.1462 | 1782
13 | 100825131 | 100906088 | ITGBL1,NALCN | D | 3 | -0.2229 | 1782
3 | 141026416 | 141156691 | CLSTN2 | D | 3 | -0.2228 | 1785 | CEU | Rsb-AE
6 | 141641156 | 141903407 | LOC729076 | A | 13 | -0.146 | 1798
18 | 29811893 | 29990128 | [NAME] | D | 2 | -0.2221 | 1801
8 | 76554034 | 76679131 | HNF4G | D | 1 | -0.222 | 1803
9 | 71998679 | 72167165 | MAMDC2,SMC5 | D | 2 | -0.2212 | 1813
12 | 82211528 | 82369795 |  | D | 3 | -0.2211 | 1815
4 | 125196764 | 125484774 |  | D | 6 | -0.2209 | 1818
3 | 165156128 | 165251701 | LOC730129 | A | 12 | -0.145 | 1820
13 | 21767813 | 21866229 |  | D | 1 | -0.2203 | 1829
7 | 48472098 | 48557231 | ABCA13 | A | 4 | -0.1447 | 1835
8 | 76681878 | 76877317 |  | A | 30 | -0.1446 | 1837
15 | 77590399 | 77623788 |  | D | 7 | -0.2187 | 1858
2 | 12252789 | 12339053 |  | D | 6 | -0.2186 | 1865
11 | 85057159 | 85204338 | CCDC89,SYTL2 | D | 1 | -0.2185 | 1872
20 | 11547971 | 11642226 | LOC728573,PGAM3P,XR_042057.1 | A | 1 | -0.144 | 1877
17 | 25937741 | 26284025 | ATAD5,C17orf42,CENTA2,CRLF3,LOC646013,LRRC37B2,SH3GLP2,SUZ12P,XR_040942.1,XR_040943.1 | D | 2 | -0.217 | 1896
2 | 12190544 | 12272115 |  | A | 11 | -0.1431 | 1904
5 | 160032689 | 160105026 | ATP10B | D | 2 | -0.2155 | 1908
11 | 120440579 | 120522028 | TBCEL,TECTA | A | 7 | -0.1426 | 1915
6 | 140547803 | 140878573 |  | A | 1 | -0.1424 | 1916
4 | 172326942 | 172384052 | LOC100132889 | A | 3 | -0.1423 | 1920
16 | 70592583 | 70776113 | DHODH,DHX38,HP,HPR,LOC100130263,LOC645443,PMFBP1,TXNL4B | A | 3 | -0.1422 | 1929 | ASN, YRI | IHS, Rsb-CE
20 | 50512678 | 50664093 | MRPS33P4 | A | 4 | -0.1422 | 1929
6 | 132294969 | 132502417 | CTGF,LOC100131774 | A | 25 | -0.1421 | 1936
6 | 38219317 | 38297014 | BTBD9,LOC100132005,ZFAND3 | A | 2 | -0.1403 | 2019
2 | 123688221 | 123814303 |  | A | 2 | -0.1385 | 2082
18 | 29732602 | 29940895 | [NAME] | A | 4 | -0.1378 | 2105
Medians of the moving windows that consist of 20 contiguous SNPs were calculated. The regions were defined by merging overlapping significant windows having p < 0.005 of median [NAME].
aA and D indicate Ancestral and Derived allele, respectively.
bMedian of XDiHH for each window were used to rank the windows within each comparison (i.e., [NAME] vs. [NAME] of ancestral or derived alleles).
cThe regions were ordered by the ranks of windows that had the highest rank within the regions.
dLists of regions for positive selection are obtained by previous reports (Frazer, et [NAME]. [1], [NAME], et [NAME]. [16], [NAME], et [NAME]. [18], and [NAME], et [NAME]. [33]). Statistically significant overlapping of top 20 regions with previously reported regions was confirmed by the bootstrap test (P = 0.0006).