Spreadsheet: 8fd4b706-bbd9-442b-b69e-1fe254dd7103
Sheet: Table S2

Summary
Experiment | [NAME]
Species | Human
Analysis software | Genome Studio v2011.1
Analysis module | [NAME] v1.9
Normalization | Quantile
Background subtraction | Yes
Error model | Illumina custom with [NAME] correction
Content Descriptor | HumanHT-12_V4_0_R2_15002873_B.bgx
Genome build | [NAME]
Detection pvalue filter | 0.05
Differential pvalue filter | 0.01
Column descriptions
ProbeID | [NAME] probe identifier
GeneID | [NAME] gene identifier
Symbol | Official gene symbol
Group1_Signal | Average signal for samples in Group 1
Group2_Signal | Average signal for samples in Group 2
[NAME] corrected DiffPval | [NAME] corrected pvalue for differential expression call
log2FoldChange | log2(Group2_Signal/Group1_Signal)
Regulation | Up if log2FoldChange is positive, [NAME] if log2FoldChange is negative
Group 1 | Group 2 | Filter | #Up-regulated probes | #Down-regulated probes | #Total
MDA231 primary tumor | MDA231 lung mets | pvalue 0.01 | 13 | 43 | 56
Article title: A new mouse model for the study of human breast cancer metastasis.
Journal: PLOS ONE
Authors:[NAME], [NAME], [NAME], Sonja [NAME], [NAME], [NAME], [NAME] and [NAME]
Affiliation: University of Miami Miller School of Medicine, Miami, FL, 33136, USA
Corresponding author email address: [EMAIL]
Table S2
Transcripts differentially expressed (p<0.01) in MDA-MB-231 lung metastases compared to primary mammary fat pad tumor (total 56)
ProbeID | GeneID | Symbol | PrimaryTumor_Signal | LungMets_Signal | [NAME] corrected DiffPval | log2FoldChange | Regulation
ILMN_3293685 | 286444 | LOC286444 | 1477.541 | 620.7954 | 7.24e-14 | -1.251008391 | DOWN
ILMN_3269537 | 100130562 | LOC100130562 | 838.4347 | 357.3684 | 7.24e-14 | -1.230286355 | DOWN
ILMN_3235221 | 644936 | [NAME] | 579.7789 | 115.3447 | 7.22e-11 | -2.329551115 | DOWN
ILMN_1658802 | 200185 | KRTCAP2 | 576.8632 | 225.9542 | 8.68e-11 | -1.352198858 | DOWN
ILMN_1768534 | 8553 | BHLHB2 | 895.3455 | 375.5659 | 2.22e-09 | -1.253378426 | DOWN
ILMN_1691466 | 7525 | [NAME] | 290.685 | 125.4781 | 2.21e-08 | -1.212021038 | DOWN
ILMN_1726245 | 7048 | TGFBR2 | 586.3365 | 269.4296 | 2.21e-08 | -1.121820512 | DOWN
ILMN_1789702 | 2632 | [NAME] | 331.3771 | 149.8488 | 4.59e-07 | -1.144966377 | DOWN
ILMN_3198247 | 388707 | LOC388707 | 1335.081 | 732.2001 | 6.24e-07 | -0.866617398 | DOWN
ILMN_1724941 | 64866 | CDCP1 | 277.2294 | 90.66485 | 2.44e-06 | -1.612465019 | DOWN
ILMN_3225591 | 144581 | RPL14L | 1314.434 | 447.8162 | 3.89e-06 | -1.553463079 | DOWN
ILMN_1736597 | 7086 | TKT | 544.6898 | 230.4656 | 2.74e-05 | -1.240883426 | DOWN
ILMN_1786242 | 649821 | [NAME] | 1760.93 | 915.8452 | 2.82e-05 | -0.943161887 | DOWN
ILMN_1691104 | 441531 | PGAM4 | 529.7178 | 258.1647 | 5.02e-05 | -1.03693224 | DOWN
ILMN_1767691 | 84313 | VPS25 | 189.9581 | 50.44327 | 6.17e-05 | -1.912947524 | DOWN
[NAME] | 441506 | LOC441506 | 1540.078 | 815.6497 | 0.000113919 | -0.91698183 | DOWN
ILMN_2384241 | 7048 | TGFBR2 | 687.793 | 314.9652 | 0.000188631 | -1.126781997 | DOWN
ILMN_3266944 | 100129599 | LOC100129599 | 1292.698 | 586.8321 | 0.000244647 | -1.139365578 | DOWN
ILMN_2382990 | 3098 | HK1 | 1369.593 | 732.0277 | 0.000333131 | -0.903777087 | DOWN
ILMN_1709486 | 8406 | SRPX | 225.533 | 60.73151 | 0.000368047 | -1.892821399 | DOWN
ILMN_1661599 | 54541 | DDIT4 | 628.5571 | 247.8058 | 0.000392632 | -1.342833855 | DOWN
ILMN_1699071 | 56911 | C21orf7 | 194.0806 | 37.98843 | 0.000529979 | -2.353023922 | DOWN
ILMN_1703906 | 55355 | HJURP | 166.1213 | 41.9715 | 0.000529979 | -1.984755138 | DOWN
ILMN_1737406 | 1316 | [NAME] | 330.9516 | 182.9121 | 0.000529979 | -0.85546973 | DOWN
ILMN_1712432 | 5708 | PSMD2 | 399.9715 | 227.4188 | 0.000534881 | -0.814545682 | DOWN
ILMN_1713369 | 23521 | RPL13A | 2621.608 | 1565.12 | 0.00056997 | -0.744178706 | DOWN
ILMN_3216125 | 728126 | LOC728126 | 2725.058 | 1690.085 | 0.00056997 | -0.68919113 | DOWN
ILMN_1656057 | 5328 | PLAU | 2271.183 | 755.4421 | 0.00093438 | -1.588050864 | DOWN
ILMN_1659913 | 3669 | ISG20 | 293.8729 | 147.5502 | 0.000934757 | -0.993986448 | DOWN
ILMN_2179652 | 27166 | PRELID1 | 313.5772 | 174.4554 | 0.000934757 | -0.845962411 | DOWN
ILMN_2341611 | 64866 | CDCP1 | 135.7215 | 24.84385 | 0.00107053 | -2.449688613 | DOWN
ILMN_1655710 | 642989 | LOC642989 | 677.7523 | 285.65 | 0.001858541 | -1.246509574 | DOWN
ILMN_3241051 | 644907 | LOC644907 | 1092.53 | 649.8776 | 0.002316433 | -0.749432968 | DOWN
ILMN_1751726 | 649049 | [NAME] | 2684.454 | 1700.961 | 0.004451957 | -0.658278621 | DOWN
ILMN_2368713 | 387522 | TMEM189-UBE2V1 | 292.1364 | 164.9879 | 0.004482133 | -0.824281905 | DOWN
ILMN_1787410 | 3692 | EIF6 | 604.6585 | 363.3806 | 0.005819004 | -0.734639165 | DOWN
ILMN_1706841 | 441531 | PGAM4 | 1325.37 | 745.8832 | 0.007038313 | -0.829373532 | DOWN
ILMN_3211132 | 645173 | LOC645173 | 1489.365 | 732.2175 | 0.007390025 | -1.0243532 | DOWN
ILMN_3219643 | 401537 | [NAME] | 1936.091 | 1131.153 | 0.007390025 | -0.775352682 | DOWN
ILMN_2338038 | 205 | AK3L1 | 146.3945 | 69.17631 | 0.007617422 | -1.081511388 | DOWN
ILMN_1714278 | 91283 | C9orf30 | 395.8675 | 228.4612 | 0.008527541 | -0.793068459 | DOWN
ILMN_3305938 | 6446 | [NAME] | 164.6065 | 80.91898 | 0.009446102 | -1.024471267 | DOWN
ILMN_1744963 | 30001 | ERO1L | 222.3768 | 100.9637 | 0.009680713 | -1.139169597 | DOWN
ILMN_1667796 | 3040 | HBA2 | 515.907 | 13414.38 | 1.74e-33 | 4.700525544 | UP
ILMN_1665865 | 3487 | IGFBP4 | 569.0417 | 2106.826 | 5.47e-07 | 1.888464885 | UP
ILMN_1728785 | 221395 | GPR116 | 189.1691 | 543.194 | 0.000110958 | 1.521791094 | UP
ILMN_1695404 | 4061 | LY6E | 294.9905 | 766.874 | 0.00026468 | 1.378321063 | UP
ILMN_1748303 | 4586 | MUC5AC | 36.66653 | 191.1715 | 0.000305692 | 2.382331816 | UP
ILMN_1800540 | 1604 | CD55 | 63.85239 | 209.4462 | 0.000934757 | 1.713767183 | UP
ILMN_1732151 | 1291 | COL6A1 | 256.9951 | 667.897 | 0.001388122 | 1.377884782 | UP
[NAME] | 25803 | SPDEF | 37.79923 | 147.6657 | 0.001388122 | 1.965906003 | UP
ILMN_1693310 | 81533 | ITFG1 | 297.2484 | 650.8235 | 0.002152003 | 1.130597301 | UP
ILMN_1735930 | 10365 | KLF2 | 204.009 | 458.8394 | 0.002729987 | 1.16935648 | UP
ILMN_2387385 | 3484 | IGFBP1 | 153.5336 | 716.6238 | 0.007055355 | 2.222661542 | UP
ILMN_2058782 | 3429 | IFI27 | 557.7331 | 1613.455 | 0.00759171 | 1.532506542 | UP
ILMN_2347798 | 2537 | IFI6 | 269.022 | 788.5547 | 0.007617422 | 1.551486677 | UP