Spreadsheet: b164328f-79ea-4b5d-a708-ad3d94bc3c46
Sheet: Sheet1

Table S3: Amplified and deleted genes and matching changing proteins. (A) Amplified genes in HCC2218 cells of which the protein levels are either two-fold up or down-regulated. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6
Gene Names | Protein Names | Protein IDs | Chromosome | Position | Log2 Ratio HCC2218/HMEC protein | Log2 Ratio HCC2218/HMEC Copy number
EML1 | Echinoderm microtubule-associated protein-like 1 | IPI00550611;IPI00334011;IPI00004582 | 14 | 100259745 | 7.710295 | 0.684216
SELENBP1 | Selenium-binding protein 1 | IPI00943000;IPI00012303;IPI00942368;IPI00852838;IPI00852768;IPI00030385;IPI00853528;IPI00892906;IPI00852953;IPI00893579 | 1 | 151336778 | 7.194342 | 1.150612
SLC9A3R1 | Na(+)/H(+) exchange regulatory cofactor NHE-RF1 | IPI00003527;IPI00794755;IPI00902652;IPI00020904;IPI00647477 | 17 | 72744763 | 5.936151 | 2.368696
ERBB2 | Receptor tyrosine-protein kinase erbB-2 | IPI00300384;IPI00845478;IPI00941360;IPI00384288;IPI00179189;IPI00008115;IPI00295401;IPI00000977 | 17 | 37844393 | 5.758347 | 2.297858
[NAME] | Lethal(2) giant larvae protein homolog 2 | [NAME] | 17 | 73521783 | 5.392355 | 2.170395
RSAD1 | Radical S-adenosyl methionine domain-containing protein 1, mitochondrial | IPI00550335;IPI00910968 | 17 | 48556190 | 4.958974 | 2.289787
[NAME] | cDNA FLJ51819, weakly similar to Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3) | IPI00909579;IPI00304071 | 17 | 48503519 | 4.67689 | 2.339711
TMEM63A | [NAME] protein 63A | IPI00006006;IPI00646598 | 1 | 226033237 | 4.446593 | 1.1774
PREX1 | Phosphatidylinositol 3,4,5-trisphosphate-dependent [NAME] exchanger 1 protein | IPI00295252;IPI00552692;IPI00218429 | 20 | 47240790 | 4.410653 | 0.6587518
SLC25A29 | Mitochondrial carnitine/acylcarnitine carrier protein CACL | IPI00184708 | 14 | 100757448 | 4.293427 | 0.6061715
SYNGR2 | SYNGR2 protein | IPI00654744;IPI00013946;IPI00789763;IPI00793573;IPI00791822 | 17 | 76164671 | 4.041271 | 0.9124242
SLC25A19 | Mitochondrial thiamine pyrophosphate carrier | IPI00028068;IPI00433339;IPI00793293 | 17 | 73269062 | 4.021635 | 2.10065
CALCOCO2 | cDNA FLJ51790, highly similar to Homo sapiens nuclear domain 10 protein (NDP52), mRNA | IPI00910883;IPI00743360;IPI00908968;IPI00797191;IPI00794330 | 17 | 46908372 | 3.909676 | 2.898203
C8orf55 | UPF0670 protein C8orf55 | IPI00171421;IPI00791754 | 8 | 143808621 | 3.907811 | 0.8849506
PPP1R9B | Neurabin-2 | IPI00045550 | 17 | 48211104 | 3.787602 | 2.069518
FDXR | cDNA FLJ53329, highly similar to NADPH:adrenodoxin oxidoreductase, mitochondrial (EC 1.18.1.2) | IPI00911050;IPI00026958;IPI00221118;IPI00910128;IPI00903185 | 17 | 72858623 | 3.742178 | 2.080463
GRB7 | Growth factor receptor-bound protein 7 | IPI00939546;IPI00448767;IPI00902705;IPI00293948;IPI00789815;IPI00791383 | 17 | 37894187 | 3.725693 | 1.834145
COX6C | Cytochrome c oxidase subunit 6C | IPI00015972 | 8 | 100890372 | 3.498741 | 1.052485
FLAD1 | FAD synthetase | IPI00220299;IPI00642864;IPI00398214;IPI00641224;IPI00855871;IPI00387088;IPI00644201;IPI00060574 | 1 | 154955814 | 3.349909 | 1.22305
C1orf69 | Putative transferase C1orf69, mitochondrial | IPI00145260 | 1 | 228353516 | 3.340392 | 1.365612
MYST2 | Histone acetyltransferase MYST2 | IPI00180764;IPI00792061;IPI00909397;IPI00909215;IPI00607795;IPI00103685 | 17 | 47866058 | 3.26432 | 1.878564
PARP1 | Poly [ADP-ribose] polymerase 1 | IPI00449049;IPI00896487;IPI00478427;IPI00477173 | 1 | 226548392 | 3.262643 | 1.679212
MAL2 | Protein MAL2 | IPI00056414;IPI00941173 | 8 | 120220610 | 3.261733 | 1.065078
PTRH2 | cDNA FLJ32471 fis, clone SKNMC2000322, highly similar to Peptidyl-tRNA hydrolase 2, mitochondrial (EC 3.1.1.29) | IPI00555597;IPI00032903 | 17 | 57774667 | 3.25396 | 2.133476
MIA3 | Melanoma inhibitory activity protein 3 | IPI00455473;IPI00739902;IPI00942436;IPI00655578;IPI00741107;IPI00929251;IPI00718836 | 1 | 222791428 | 3.127075 | 1.391204
PLEKHF2 | Pleckstrin homology domain-containing family F member 2 | IPI00002424 | 8 | 96146032 | 3.068783 | 1.169663
SPATA20 | Spermatogenesis-associated protein 20 | IPI00154567;IPI00335497;IPI00827778;IPI00828067;IPI00908737;IPI00816652 | 17 | 48624555 | 3.056754 | 2.216087
KIAA0100 | UPF0378 protein KIAA0100 | IPI00373894;IPI00784567;IPI00784975;IPI00787005 | 17 | 26941459 | 2.960127 | 0.9179841
UBE2Z | Ubiquitin-conjugating enzyme E2 Z | IPI00011996;IPI00829749 | 17 | 46985731 | 2.950268 | 2.926823
C5orf33 | UPF0465 protein C5orf33 | IPI00845432;IPI00431405;IPI00922892;IPI00654793 | 5 | 36192694 | 2.899199 | 0.8300693
LGALS8 | Galectin-8 | IPI00165587;IPI00215644;IPI00874257;IPI00010844;IPI00645902;IPI00646437;IPI00479062;IPI00514654;IPI00645350;IPI00909243;IPI00644218 | 1 | 236681300 | 2.832358 | 0.9884602
PYCR2 | Pyrroline-5-carboxylate reductase 2 | IPI00470610;IPI00747534;IPI00908985;IPI00642541;IPI00335061;IPI00514380 | 1 | 226074773 | 2.812493 | 1.245878
CGN | Cingulin | IPI00844508;IPI00929635;IPI00852984;IPI00797763;IPI00915752;IPI00744509 | 1 | 151483863 | 2.793732 | 1.290312
TRPS1 | Zinc finger transcription factor Trps1 | IPI00853099;IPI00937887;IPI00296078 | 8 | 116420724 | 2.789138 | 1.030763
HEATR6 | HEAT repeat-containing protein 6 | IPI00464999;IPI00784697 | 17 | 58120562 | 2.780511 | 3.085097
SUMO2 | Small ubiquitin-related modifier 2 | IPI00299149;IPI00140827;IPI00745893;IPI00936162;IPI00936160;IPI00790142;IPI00640611;IPI00827816;IPI00434968 | 21 | 46191374 | 2.773344 | 1.789152
TDRKH | Tudor and KH domain-containing protein | IPI00009982;IPI00410251;IPI00642210;IPI00922525 | 1 | 151744050 | 2.768045 | 1.219556
LRRC59 | Leucine-rich repeat-containing protein 59 | IPI00396321 | 17 | 48458600 | 2.729597 | 2.260439
RECQL5 | ATP-dependent DNA helicase Q5 | IPI00185769;IPI00220820;IPI00220819;IPI00940172 | 17 | 73622933 | 2.728882 | 2.158352
VPS13B | Vacuolar protein sorting-associated protein 13B | IPI00376439;IPI00420061;IPI00376437;IPI00376436;IPI00376435;IPI00941724 | 8 | 100025494 | 2.687365 | 1.05764
ZNF217 | Zinc finger protein 217 | [NAME] | 20 | 52183604 | 2.678692 | 0.5996913
ACP6 | Lysophosphatidic acid phosphatase type 6 | IPI00099838;IPI00556344 | 1 | 147119170 | 2.674963 | 1.136337
TMEM70 | [NAME] protein 70, mitochondrial | IPI00106966;IPI00787239;IPI00759624 | 8 | 74888430 | 2.667767 | 0.9303789
[NAME] | [NAME] protein 49 | IPI00062469;IPI00792839 | 17 | 57784863 | 2.662863 | 2.868602
GGPS1 | Geranylgeranyl pyrophosphate synthetase | IPI00032892;IPI00658186 | 1 | 235490665 | 2.656591 | 0.9016525
TPD52 | Tumor protein D52 | IPI00873344;IPI00896474;IPI00619958;IPI00619951;IPI00941154;IPI00796527 | 8 | 80947107 | 2.632164 | 1.077811
ZBTB7B | Zinc finger and BTB domain-containing protein 7B | IPI00026277;IPI00937353 | 1 | 154975133 | 2.554428 | 1.219139
GRB2 | Growth factor receptor-bound protein 2 | IPI00021327;IPI00792746;IPI00218070;IPI00790124 | 17 | 73314157 | 2.54101 | 2.192281
ZHX2 | Zinc fingers and homeoboxes protein 2 | IPI00007256 | 8 | 123793901 | 2.501982 | 1.054358
BPTF | Nucleosome-remodeling factor subunit BPTF | IPI00785110;IPI00254408;IPI00376404;IPI00024532;IPI00911006 | 17 | 65821640 | 2.466833 | 1.097309
SCCPDH | Probable saccharopine dehydrogenase | IPI00329600;IPI00641681 | 1 | 246887349 | 2.440113 | 1.031702
C8orf38 | UPF0551 protein C8orf38, mitochondrial | IPI00852983;IPI00847930;IPI00167088;IPI00909221 | 8 | 95908041 | 2.385094 | 1.183873
MSTO1 | Protein misato homolog 1 | IPI00306049;IPI00855996;IPI00856007;IPI00642805;IPI00908498;IPI00856061;IPI00910232;IPI00787388 | 1 | 155579996 | 2.362888 | 0.9317669
IMPAD1 | Inositol monophosphatase 3 | IPI00787853 | 8 | 57870491 | 2.341982 | 1.031776
GALK1 | Galactokinase 1 | IPI00019383;IPI00940264;IPI00442827;IPI00747722 | 17 | 73754018 | 2.32915 | 0.6571324
IARS2 | Isoleucyl-tRNA synthetase, mitochondrial | IPI00017283 | 1 | 220267444 | 2.314419 | 1.382184
TFB2M | Dimethyladenosine transferase 2, mitochondrial | IPI00034069 | 1 | 246703862 | 2.269733 | 0.9886127
ATAD2 | ATPase family AAA domain-containing protein 2 | IPI00170548;IPI00470801;IPI00893906 | 8 | 124332093 | 2.269335 | 0.9005648
TSTA3 | GDP-L-fucose synthetase | IPI00014361;IPI00791788;IPI00909958 | 8 | 144694788 | 2.249508 | 0.8333286
ERAL1 | GTP-binding protein era homolog | IPI00026512;IPI00216548 | 17 | 27182020 | 2.236117 | 0.8569918
SCAMP3 | Secretory carrier-associated membrane protein 3 | IPI00306382;IPI00306383 | 1 | 155225770 | 2.224445 | 1.331574
CNIH4 | Protein cornichon homolog 4 | IPI00000115;IPI00642014 | 1 | 224544552 | 2.222897 | 1.327271
GOLPH3 | Golgi phosphoprotein 3 | IPI00005490 | 5 | 32124810 | 2.221604 | 0.7620036
LASS2 | LAG1 longevity assurance homolog 2 | IPI00305304;IPI00642378;IPI00642091;IPI00641012;IPI00641435;IPI00472101 | 1 | 150933059 | 2.210773 | 1.250755
PMVK | Phosphomevalonate kinase | [NAME] | 1 | 154897210 | 2.180658 | 1.33396
GGA3 | ADP-ribosylation factor-binding protein GGA3 | IPI00021174;IPI00219305;IPI00922831;IPI00922611 | 17 | 73232695 | 2.148758 | 1.968582
MTERFD1 | mTERF domain-containing protein 1, mitochondrial | IPI00101163;IPI00798150 | 8 | 97251663 | 2.134655 | 0.9473823
EPHX1 | Epoxide hydrolase 1 | IPI00009896;IPI00647694;IPI00640017 | 1 | 225997794 | 2.119239 | 1.159667
LYPLAL1 | Lysophospholipase-like protein 1 | IPI00059762;IPI00642838;REV_IPI00464954;REV_IPI00002277;REV_IPI00030829;REV_IPI00791856;REV_IPI00916627 | 1 | 219347186 | 2.112321 | 1.418067
RBM34 | RNA-binding protein 34 | IPI00181617;IPI00658072;IPI00930315;IPI00930357;IPI00514231 | 1 | 235294498 | 2.11085 | 1.014289
HRSP12 | Ribonuclease UK114 | IPI00005038;IPI00795860;IPI00796361 | 8 | 99114567 | 2.058751 | 1.035591
[NAME] | Histone arginine demethylase [NAME] | IPI00604598;IPI00550958;IPI00375496;IPI00896458 | 17 | 74708914 | 2.057922 | 1.069116
CYC1 | Cytochrome c1, heme protein, mitochondrial | IPI00029264 | 8 | 145149960 | 2.041655 | 0.8431106
BPNT1 | 3'(2'),5'-bisphosphate nucleotidase 1 | IPI00410214;IPI00910437;IPI00410215 | 1 | 220230824 | 2.037661 | 1.491355
ANKRD40 | Ankyrin repeat domain-containing protein 40 | IPI00061168 | 17 | 48770551 | 2.03633 | 2.251757
WDR26 | WD repeat-containing protein 26 | IPI00645819 | 1 | 224572845 | 2.03023 | 1.32596
LIG3 | DNA ligase 3 | IPI00029081;IPI00000156 | 17 | 33307542 | 2.023395 | 0.7192452
C5orf22 | UPF0489 protein C5orf22 | IPI00019966;IPI00867737;IPI00910695;IPI00168444 | 5 | 31532373 | 2.020858 | 0.7802346
EPN3 | Epsin-3 | IPI00300584;IPI00845319;IPI00910899;IPI00386833 | 17 | 48610048 | 2.014654 | 2.205853
ACBD3 | Golgi resident protein GCP60 | IPI00009315 | 1 | 226332380 | 1.996397 | 1.314493
ICT1 | Immature colon carcinoma transcript 1 protein | IPI00791262;IPI00029114 | 17 | 73008776 | 1.95351 | 2.105077
CCDC127 | Coiled-coil domain-containing protein 127 | IPI00060148 | 5 | 204875 | 1.927435 | 0.6084838
[NAME] | Brix domain-containing protein 2 | IPI00181728 | 5 | 34915820 | 1.924492 | 0.7198024
TMEM97 | [NAME] protein 97 | IPI00020004;IPI00395967 | 17 | 26646161 | 1.914567 | 1.100492
HN1 | Hematological and neurological expressed 1 protein | IPI00007764;IPI00384857;IPI00447316;IPI00917313;IPI00916337 | 17 | 73131343 | 1.909225 | 1.867579
SAP30BP | SAP30-binding protein | IPI00549296;IPI00333699;IPI00794827;IPI00792209 | 17 | 73663399 | 1.904545 | 1.818847
[NAME] | BRO1 domain-containing protein BROX | IPI00065500;IPI00922787;IPI00644855 | 1 | 222885895 | 1.888771 | 1.336601
SLC25A32 | Mitochondrial folate transporter/carrier | IPI00300886;IPI00793463 | 8 | 104410869 | 1.880197 | 1.11658
ENAH | Protein enabled homolog | IPI00411623;IPI00646954;IPI00374054;IPI00783772;IPI00749432;IPI00640474;IPI00170979 | 1 | 225677502 | 1.879364 | 1.311005
DECR1 | 2,4-dienoyl-CoA reductase, mitochondrial | IPI00003482;IPI00789705 | 8 | 91013580 | 1.878856 | 1.098178
UQCRB | Cytochrome b-c1 complex subunit 7 | IPI00220416;IPI00790644;IPI00798386 | 8 | 97239310 | 1.878648 | 0.9213904
PBXIP1 | Pre-B-cell leukemia transcription factor-interacting protein 1 | IPI00332106;IPI00645060;IPI00220556;IPI00828109 | 1 | 154916552 | 1.877596 | 1.293315
S100A14 | Protein S100-A14 | IPI00010214 | 1 | 153586731 | 1.840481 | 1.281204
TOP1 | DNA topoisomerase 1 | IPI00413611 | 20 | 39657458 | 1.84033 | 0.6374983
PITPNC1 | Cytoplasmic phosphatidylinositol transfer protein 1 | IPI00018284;IPI00063187;IPI00942543 | 17 | 65373924 | 1.82722 | 0.994325
ABCC3 | Canalicular multispecific organic anion transporter 2 | IPI00006674;IPI00219844;IPI00251066 | 17 | 48712218 | 1.810759 | 2.267285
RAB4A | Ras-related protein Rab-4A | IPI00480056;IPI00939242 | 1 | 229406822 | 1.808517 | 1.485082
FTSJ3 | Putative rRNA methyltransferase 3 | IPI00217686 | 17 | 61896795 | 1.802301 | 0.905911
NME1-NME2 | Nucleoside diphosphate kinase | IPI00604590;IPI00795292;IPI00026260;IPI00790982;IPI00797082;IPI00790856;IPI00794728 | 17 | 49230951 | 1.775325 | 1.462538
FH | Fumarate hydratase, mitochondrial | IPI00296053;IPI00759715 | 1 | 241660903 | 1.775244 | 1.102938
ZC3H11A | Zinc finger CCCH domain-containing protein 11A | IPI00328306;IPI00455725 | 1 | 203764782 | 1.768164 | 1.336479
BRP16 | Brain protein 16 | IPI00009335;IPI00741734;IPI00937343;IPI00930221;IPI00794094 |  |  | 1.767036 | 0.8483682
CCDC47 | Coiled-coil domain-containing protein 47 | IPI00024642;IPI00743775 | 17 | 61822611 | 1.763136 | 0.8930728
GATAD2B | Transcriptional repressor p66-beta | IPI00103554;IPI00556512;IPI00938301 | 1 | 153777201 | 1.757283 | 1.210506
APPBP2 | Amyloid protein-binding protein 2 | IPI00007393;IPI00788682 | 17 | 58520520 | 1.745403 | 2.837901
NCOA5 | Nuclear receptor coactivator 5 | IPI00288941;IPI00647587 | 20 | 44689624 | 1.739564 | 0.7117857
ANXA9 | [NAME] | IPI00008714 | 1 | 150954493 | 1.729926 | 1.256075
POGZ | Pogo transposable element with ZNF domain | IPI00410717;IPI00410720;IPI00410719;IPI00514439;IPI00514078 | 1 | 151375200 | 1.723806 | 1.149204
FAM84B | Protein FAM84B | IPI00064666 | 8 | 127564689 | 1.723275 | 1.047808
TCEA1 | Transcription elongation factor A protein 1 | IPI00333215;IPI00943316;IPI00935732;IPI00218106;IPI00922871;IPI00018403;IPI00643225;IPI00646348;IPI00647399 | 8 | 54879119 | 1.717192 | 1.103336
C10orf58 | Uncharacterized protein C10orf58 | IPI00296190;IPI00646289;IPI00646889;IPI00939991 | 10 | 82167585 | 1.704385 | 1.110564
ZNF687 | Zinc finger protein 687 | IPI00395813;IPI00744026;IPI00916604 | 1 | 151254094 | 1.690937 | 1.199102
SUPT6H | Transcription elongation factor [NAME] | IPI00784161;IPI00456683 | 17 | 26989302 | 1.658473 | 0.9208518
MRPL55 | 39S ribosomal protein L55, mitochondrial | IPI00419626;IPI00640399;IPI00472663;IPI00644704 | 1 | 228294380 | 1.651112 | 1.375291
GUK1 | Guanylate kinase 1 | IPI00514926;IPI00644488;IPI00182293;IPI00515106;IPI00514494;IPI00513820;IPI00514021;IPI00470394 | 1 | 228327663 | 1.641753 | 1.351847
CDK5 | Cell division protein kinase 5 | IPI00023530;IPI00827700 | 7 | 150750899 | 1.628404 | 1.033648
RAB2A | Ras-related protein Rab-2A | IPI00031169;IPI00873632;IPI00794027;IPI00798089;IPI00790570;IPI00794561;IPI00433806;IPI00064352 | 8 | 61429559 | 1.61735 | 1.135622
CDR2L | Cerebellar degeneration-related protein 2-like | IPI00395950;IPI00935388;IPI00014984 | 17 | 72983727 | 1.610333 | 2.061793
BUD31 | Protein BUD31 homolog | IPI00013180;IPI00922484;IPI00926757;IPI00925240;IPI00925053;IPI00925500 | 7 | 99006264 | 1.586629 | 0.600898
MRPL27 | Putative uncharacterized protein MRPL27 | IPI00873328;IPI00009444;IPI00796313;IPI00472168;IPI00790114;IPI00375343 | 17 | 48445231 | 1.576373 | 2.171988
FAM82B | Regulator of microtubule dynamics protein 1 | IPI00329696;IPI00423441;IPI00792962 | 8 | 87484578 | 1.576164 | 1.019396
ADAR | Double-stranded RNA-specific adenosine deaminase | IPI00394668;IPI00394665;IPI00760588 | 1 | 154554537 | 1.5689 | 1.230493
MRPS7 | 28S ribosomal protein S7, mitochondrial | IPI00006440 | 17 | 73257749 | 1.552058 | 2.053596
[NAME] | Regulation of nuclear pre-mRNA domain-containing protein 2 | IPI00384541;IPI00639879;IPI00760919;IPI00647267 | 1 | 150335567 | 1.54717 | 1.262914
CD46 | Membrane cofactor protein | IPI00219852;IPI00332399;IPI00456644;IPI00374177;IPI00332397;IPI00332401;IPI00479283;IPI00012035;IPI00173903;IPI00374175;IPI00398353;IPI00219853;IPI00374176;IPI00398354;IPI00337661;IPI00374178 | 1 | 207925402 | 1.545215 | 0.6573437
MRPL15 | 39S ribosomal protein L15, mitochondrial | [NAME] | 8 | 55047781 | 1.526078 | 1.050109
OTUD7B | OTU domain-containing protein 7B | IPI00024658;IPI00647752;IPI00455137;IPI00152625 | 1 | 149912231 | 1.513684 | 1.203735
ZFAND1 | AN1-type zinc finger protein 1 | IPI00291064;IPI00642318;IPI00793154 | 8 | 82613958 | 1.507482 | 1.007825
INTS2 | Integrator complex subunit 2 | IPI00477759 | 17 | 59942728 | 1.496362 | 3.281798
TATDN1 | Putative deoxyribonuclease TATDN1 | IPI00795107;IPI00012463;IPI00792405;IPI00790602;IPI00793548;IPI00792229;IPI00788602 | 8 | 125500751 | 1.486901 | 1.064209
GOLGA5 | Golgin subfamily A member 5 | IPI00294065;IPI00333637;IPI00908497 | 14 | 93260650 | 1.486277 | 0.6731149
TBCE | Tubulin-specific chaperone E | IPI00018402;IPI00922443;IPI00922576 | 1 | 235530675 | 1.467714 | 0.8950516
GNA13 | Guanine nucleotide-binding protein subunit alpha-13 | IPI00290928;IPI00922608 | 17 | 63005407 | 1.460976 | 0.9059822
TARS2 | Threonyl-tRNA synthetase, mitochondrial | IPI00604527;IPI00018632;IPI00640970;IPI00514039;IPI00910189 | 1 | 150459890 | 1.456524 | 1.209299
RCOR1 | REST corepressor 1 | IPI00008531 | 14 | 103059233 | 1.451432 | 0.6042475
DEGS1 | Sphingolipid delta(4)-desaturase DES1 | IPI00021147 | 1 | 224363458 | 1.449125 | 1.259029
GOLPH3L | Golgi phosphoprotein 3-like | IPI00514951;IPI00012313;IPI00922172 | 1 | 150618701 | 1.441663 | 1.408644
ARFGEF2 | Brefeldin A-inhibited guanine nucleotide-exchange protein 2 | IPI00002186 | 20 | 47538427 | 1.44163 | 0.6519276
MRPL13 | 39S ribosomal protein [NAME], mitochondrial | IPI00022403;IPI00792439;IPI00793491 | 8 | 121408083 | 1.41089 | 1.040195
NIPBL | Nipped-B-like protein | IPI00436632;IPI00026466;IPI00436634 | 5 | 36876861 | 1.384814 | 0.8677959
RRM2B | Ribonucleoside-diphosphate reductase subunit M2 B | IPI00100213;IPI00741117;IPI00438859;IPI00876866;IPI00735900 | 8 | 103216732 | 1.384656 | 1.063286
ASPH | Aspartyl/asparaginyl beta-hydroxylase | IPI00294834;IPI00941148;IPI00032449;IPI00032453;IPI00746217;IPI00909538;IPI00921959;IPI00396582;IPI00910043;IPI00024254;IPI00024572;IPI00032450;IPI00433478;IPI00796966 | 8 | 62413115 | 1.376553 | 1.139903
S100A8 | Protein S100-A8 | IPI00007047 | 1 | 153362508 | 1.365908 | 1.269513
SMARCD2 | SMARCD2 protein | IPI00848321;IPI00242273;IPI00939917;IPI00177890;IPI00935702;IPI00514042;IPI00853043;IPI00456146;IPI00106988;IPI00903013;IPI00922828;IPI00062599;IPI00221105;IPI00852816;IPI00853408 | 17 | 61909441 | 1.343482 | 0.8976275
STAU2 | Double-stranded RNA-binding protein Staufen homolog 2 | IPI00300789;IPI00164481;IPI00640881;IPI00644299;IPI00788774;IPI00644696 | 8 | 74332608 | 1.339157 | 1.071206
VCPIP1 | Deubiquitinating protein VCIP135 | IPI00064162 | 8 | 67540746 | 1.337609 | 1.080655
SUB1 | Activated RNA polymerase II transcriptional coactivator p15 | IPI00221222;IPI00455831;IPI00930562 | 5 | 32585605 | 1.330519 | 0.796728
CRTC2 | CREB-regulated transcription coactivator 2 | IPI00783502;IPI00639850 | 1 | 153920151 | 1.329524 | 1.181209
TAOK1 | Serine/threonine-protein kinase TAO1 | IPI00002232;IPI00654673;IPI00448764 | 17 | 27717943 | 1.318708 | 1.461509
OXR1 | cDNA FLJ56044, highly similar to Oxidation resistance protein 1 | IPI00738813;IPI00908318;IPI00166807;IPI00942506;IPI00902977;IPI00298348;IPI00747160;IPI00924486;IPI00791002;IPI00927650 | 8 | 107282473 | 1.314859 | 1.09853
URB2 | Unhealthy ribosome biogenesis protein 2 homolog | IPI00028980;IPI00647910 | 1 | 229761981 | 1.307842 | 1.47107
EPRS | cDNA FLJ58269, highly similar to Bifunctional aminoacyl-tRNA synthetase | IPI00923606;IPI00013452;IPI00909383 | 1 | 220141943 | 1.30681 | 1.542212
INTS3 | Integrator complex subunit 3 | IPI00792312;IPI00418336;IPI00477093;IPI00645811;IPI00644073 | 1 | 153700543 | 1.261018 | 1.444609
SLC12A7 | Solute carrier family 12 member 7 | IPI00008616;IPI00877110;IPI00301180;IPI00921814 | 5 | 1050491 | 1.252042 | 0.6434169
CDC42BPA | Serine/threonine-protein kinase MRCK alpha | IPI00903296;IPI00640957;IPI00640468;IPI00550263;IPI00654830;IPI00642165;IPI00329326;IPI00843961;IPI00872095;IPI00305254;IPI00220440;IPI00220443;IPI00555911;IPI00418464;IPI00644326;IPI00220441;IPI00220439;IPI00790469;IPI00220442;IPI00855901;IPI00215958 | 1 | 227177566 | 1.245309 | 1.877481
SRP9 | Signal recognition particle 9 kDa protein | IPI00642816;IPI00216125;IPI00419797 | 1 | 225965531 | 1.236526 | 1.189843
RRP15 | RRP15-like protein | IPI00007004 | 1 | 218458629 | 1.229308 | 1.439527
TRAPPC9 | Putative uncharacterized protein TRAPPC9 | IPI00181881;IPI00783996;IPI00940268;IPI00790904 | 8 | 140742588 | 1.227731 | 0.9356717
RRS1 | Ribosome biogenesis regulatory protein homolog | IPI00014253 | 8 | 67341263 | 1.216707 | 1.021567
YY1 | Transcriptional repressor protein YY1 | IPI00878557;IPI00014513;IPI00419912;IPI00292080 | 14 | 100705322 | 1.212119 | 0.6614637
PYCRL | Pyrroline-5-carboxylate reductase 3 | IPI00939144;IPI00926996 | 8 | 144686083 | 1.210354 | 0.8064005
TK1 | Thymidine kinase, cytosolic | IPI00299214;IPI00791117;IPI00794651;IPI00795236 | 17 | 76170160 | 1.209391 | 0.892792
TPD52L2 | Tumor protein D54 | IPI00399266;IPI00399268;IPI00221178 | 20 | 62489087 | 1.190193 | 0.6186845
SPAG1 | Sperm-associated antigen 1 | IPI00292326;IPI00903172 | 8 | 101170263 | 1.18466 | 1.108528
BOP1 | Ribosome biogenesis protein BOP1 | IPI00028955;IPI00741996 | 8 | 145486056 | 1.182303 | 0.771911
TBX2 | T-box transcription factor [NAME] | IPI00297902;IPI00940256;IPI00925935;IPI00555938 | 17 | 59477257 | 1.179441 | 2.949267
ATP5H | ATP synthase subunit d, mitochondrial | IPI00220487;IPI00456049;IPI00792135;IPI00888359;IPI00887091;IPI00879809 | 17 | 73034955 | 1.17553 | 2.117094
FAM164A | [NAME] protein FAM164A | IPI00329753;IPI00941479 | 8 | 79578330 | 1.166481 | 1.073499
MRPL9 | 39S ribosomal protein [NAME], mitochondrial | IPI00307409;IPI00514545;IPI00909587;IPI00909111 | 1 | 151732119 | 1.163738 | 1.192415
BOLA1 | BolA-like protein 1 | [NAME] | 1 | 149858486 | 1.162788 | 1.203642
MTX1 | Metaxin-1 | IPI00013678;IPI00914855;IPI00760637;IPI00394889 | 1 | 155178490 | 1.137961 | 1.313649
PI4KB | [NAME] beta | IPI00641770;IPI00939510;IPI00002591;IPI00165547;IPI00852910;IPI00917885;IPI00852779 | 1 | 151264413 | 1.122662 | 1.190493
VPS45 | Vacuolar protein sorting-associated protein 45 | IPI00090327;IPI00514681 | 1 | 150039342 | 1.115759 | 1.267549
MRPL41 | 39S ribosomal protein [NAME], mitochondrial | IPI00217553 | 9 | 140445651 | 1.110772 | 2.171988
WIPI1 | WD repeat domain phosphoinositide-interacting protein 1 | IPI00217556;IPI00658123;IPI00792340 | 17 | 66417423 | 1.089155 | 0.9812221
ARFGAP1 | ADP-ribosylation factor GTPase-activating protein 1 | IPI00217354;IPI00175169;IPI00449160;IPI00922590 | 20 | 61904156 | 1.075663 | 0.603682
NDUFS2 | NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial | IPI00025239 | 1 | 161166894 | 1.061162 | 0.6118748
DDX27 | Probable ATP-dependent RNA helicase DDX27 | IPI00293078 | 20 | 47835884 | 1.058414 | 0.6094803
EIF4A3 | Eukaryotic initiation factor 4A-III | IPI00009328 | 17 | 78109019 | 1.045524 | 0.8432918
SEC22B | Vesicle-trafficking protein SEC22b | IPI00006865 |  |  | 1.032272 | 0.9778309
MRPS30 | 28S ribosomal protein S30, mitochondrial | IPI00010278 | 5 | 44809027 | 1.030021 | 0.8081042
HIST2H3A | Histone H3.2 | IPI00171611;IPI00216402;IPI00909530;IPI00419884;IPI00477080;IPI00793280;IPI00942498;IPI00792719 | 1;12;17 | 149784826 | 1.016518 | 0.7319214
CYHR1 | Cysteine and histidine-rich protein 1 | IPI00889783;IPI00889572 | 8 | 145675762 | 1.013192 | 0.8241444
PRKAR1A | cAMP-dependent protein kinase type I-alpha regulatory subunit | IPI00021831;IPI00789368 | 17 | 66508110 | 1.011659 | 1.028512
[NAME] | 14-3-3 protein beta/alpha | [NAME] | 20 | 43514317 | 1.01001 | 0.6646329
EXOSC4 | Exosome complex exonuclease RRP41 | IPI00745613 | 8 | 145133522 | -1.00544 | 0.8709385
STK24 | Serine/threonine-protein kinase 24 | IPI00335281;IPI00909904;IPI00002212;IPI00640104;IPI00552426;IPI00641189;IPI00386250 | 13 | 99102455 | -1.089336 | 0.9820249
S100A2 | Putative uncharacterized protein S100A2 | IPI00873099;IPI00514806 | 1 | 153533584 | -1.140676 | 1.186685
NUP133 | Nuclear pore complex protein Nup133 | IPI00291200;IPI00514905;IPI00641510 | 1 | 229577044 | -1.169042 | 1.517735
TANC2 | Protein TANC2 | IPI00894531;IPI00868787;IPI00892805;IPI00893434 | 17 | 61086898 | -1.207137 | 1.031501
NNT | NAD(P) transhydrogenase, mitochondrial | IPI00337541 | 5 | 43602825 | -1.3605 | 0.8801059
TTPAL | Alpha-tocopherol transfer protein-like | IPI00013624;IPI00513894;IPI00853416 | 20 | 43104526 | -1.477085 | 0.6176826
CAPN2 | Calpain-2 catalytic subunit | IPI00289758;IPI00910745;IPI00902887;IPI00446140;IPI00376289;IPI00874238;IPI00888895 | 1 | 223889347 | -1.480545 | 1.362766
MSN | Moesin | [NAME] | X | 64887537 | -1.605837 | 0.74358
GALNT2 | Polypeptide N-acetylgalactosaminyltransferase 2 | IPI00004669;IPI00922793;IPI00921824 | 1 | 230193737 | -1.606918 | 1.4944
TRIO | Triple functional domain protein | IPI00657953;IPI00479523;IPI00384882;IPI00028382;IPI00794432;IPI00921549;IPI00442035 | 5 | 14143811 | -1.769357 | 0.7260711
SCPEP1 | [NAME]-inducible serine carboxypeptidase | IPI00012426;IPI00477895;IPI00789511 | 17 | 55055468 | -1.783939 | 0.6596701
BASP1 | Brain acid soluble protein 1 | IPI00299024;IPI00908521 | 5 | 17217669 | -1.827039 | 0.7084641
IMPA1 | cDNA FLJ54837, highly similar to Inositol monophosphatase (EC 3.1.3.25) | IPI00921428;IPI00020906;IPI00791997;IPI00790217 | 8 | 82569151 | -1.950444 | 0.9505174
ITGA3 | Integrin alpha-3 | IPI00290043;IPI00215995 | 17 | 48133340 | -2.033391 | 2.050352
PPM2C | cDNA FLJ56179, highly similar to Pyruvate dehydrogenase (lipoamide)-phosphatase 1 (EC 3.1.3.43) | IPI00794806;IPI00935529;IPI00218971 | 8 | 94929162 | -2.077549 | 1.070806
CHD7 | Chromodomain-helicase-DNA-binding protein 7 | IPI00794880 | 8 | 61591339 | -2.103066 | 1.121869
PLXNA1 | [NAME] | IPI00552671;IPI00871326;IPI00924497;IPI00925647;IPI00759587 | 3 | 126707437 | -2.783924 | 1.076014
GINS2 | DNA replication complex GINS protein PSF2 | IPI00007146 | 16 | 85709804 | -2.859059 | 0.6128598
PLEC1 | Plectin-1 | IPI00014898;IPI00186711;IPI00398778;IPI00398775;IPI00398776;REV_IPI00025442;REV_IPI00646992;REV_IPI00180781;REV_IPI00011276;REV_IPI00182167;REV_IPI00642832 | 8 | 144989321 | -3.024199 | 1.022771
S100A4 | Protein S100-A4 | IPI00032313 | 1 | 153516089 | -3.192004 | 1.188099
S100A9 | Protein S100-A9 | IPI00027462;IPI00939362 | 1 | 153330330 | -3.413275 | 1.323082
S100A10 | Protein S100-A10 | IPI00183695 | 1 | 151955391 | -3.690504 | 1.451858
CA2 | Carbonic anhydrase 2 | IPI00218414;IPI00790885 | 8 | 86376131 | -3.869503 | 1.006965
ITGB4 | Integrin beta-4 | IPI00220845;IPI00027422;IPI00220847;IPI00220846;IPI00909605 | 17 | 73717516 | -4.949851 | 1.497857
S100A6 | Protein S100-A6 | IPI00027463 | 1 | 153507075 | -6.317262 | 1.20446