Spreadsheet: 80090ee2-dad4-4d02-84cb-f13f52436a9d
Sheet: Sheet1

Unnamed: 0 | Number of genes | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Up-regulated | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Down-regulated | Unnamed: 17 | Unnamed: 18 | Unnamed: 19 | Unnamed: 20 | Unnamed: 21
 |  | Up-regulated |  |  | Down-regulated |  |  |  | Short |  | Medium |  | Long |  |  | Short |  | Medium |  | Long
Pathway_name | Total | Short | Medium | Long | Short | Medium | Long |  | +/- | p-val | +/- | p-val | +/- | p-val |  | +/- | p-val | +/- | p-val | +/- | p-val
All pathways | 1783 | 95 | 130 | 117 | 21 | 125 | 138
Pathways with expression changes
1,4-dichlorobenzene degradation pathway | 2 | 0 | 0 | 0 | 0 | 1 | 1 |  |  |  |  |  |  |  |  |  |  | 7.132 | 0.13533478 | 6.460144927536231 | 0.148844965
2-nitropropane degradation | 1 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 14.264 | 0.07010656
4-hydroxyproline degradation | 1 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 14.264 | 0.07010656
abscisic acid biosynthesis | 5 | 1 | 1 | 0 | 0 | 0 | 0 |  | 3.753684210526316 | 0.239729438 | 2.743076923076923 | 0.315433477
aerobic glycerol catabolism | 37 | 0 | 1 | 3 | 0 | 2 | 1 |  |  | 0.25970667 | 0.3706860706860707 | 0.516148444 | 1.235620235620236 | 0.7312826581 |  |  |  | 0.7710270270270271 |  | 0.3491970231100666 | 0.3580076
alanine biosynthesis II | 3 | 1 | 0 | 0 | 0 | 0 | 0 |  | 6.256140350877192 | 0.151558051
alanine degradation 3 | 3 | 1 | 0 | 0 | 0 | 0 | 0 |  | 6.256140350877192 | 0.151558051
ammonium assimilation | 8 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 1.615036231884058 | 0.475744913
anthocyanin biosynthesis | 8 | 1 | 2 | 2 | 0 | 0 | 0 |  | 2.346052631578947 | 0.355261136 | 3.428846153846154 | 0.110572965 | 3.80982905982906 | 0.0921797842
arginine biosynthesis 4 | 4 | 0 | 1 | 0 | 0 | 0 | 1 |  |  |  | 3.428846153846154 | 0.261465225 |  |  |  |  |  |  |  | 3.230072463768116 | 0.275671678
arginine biosynthesis II | 9 | 0 | 1 | 0 | 0 | 0 | 0 |  |  |  | 1.523931623931624 | 0.494871709
arginine degradation I | 2 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 6.460144927536231 | 0.148844965
arginine glutamate degradation | 3 | 0 | 0 | 1 | 0 | 1 | 0 |  |  |  |  |  | 5.07977207977208 | 0.1843204118 |  |  |  | 4.754666666666666 | 0.19602156
arginine proline degradation | 3 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 4.306763285024154 | 0.214796338
arginine spermine degradation | 6 | 3 | 2 | 2 | 0 | 0 | 0 |  | 9.384210526315789 | 0.002607654 | 4.571794871794872 | 0.065170126 | 5.07977207977208 | 0.0538088584
asparagine degradation 1 | 11 | 0 | 0 | 1 | 0 | 1 | 0 |  |  |  |  |  | 1.385392385392386 | 0.5270496709 |  |  |  | 1.296727272727273 | 0.55151195
aspartate biosynthesis and degradation | 9 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 1.693257359924026 | 0.4578804836
auxin biosynthesis | 8 | 0 | 2 | 0 | 0 | 0 | 0 |  |  |  | 3.428846153846154 | 0.110572965
betaine biosynthesis | 3 | 1 | 0 | 0 | 0 | 0 | 1 |  | 6.256140350877192 | 0.151558051 |  |  |  |  |  |  |  |  |  | 4.306763285024154 | 0.214796338
biosynthesis of Arabidopsis flavonoids | 12 | 1 | 3 | 0 | 0 | 0 | 0 |  | 1.564035087719298 | 0.482697686 | 3.428846153846154 | 0.051231097 |  |  |  |  |  |  |  |  | 0.615737242
biosynthesis of chlorophyll | 23 | 0 | 0 | 0 | 0 | 1 | 4 |  |  | 0.630713674 |  | 0.405920221 |  | 0.3959738416 |  |  |  | 0.6201739130434782 |  | 2.24700693131695 | 0.09624259
biosynthesis of proto- and siroheme | 13 | 0 | 0 | 0 | 0 | 1 | 3 |  |  |  |  | 0.616419697 |  |  |  |  |  | 1.097230769230769 | 0.61257108 | 2.981605351170569 | 0.073088748
[NAME] biosynthesis I | 3 | 1 | 0 | 0 | 0 | 1 | 0 |  | 6.256140350877192 | 0.151558051 |  |  |  |  |  |  |  | 4.754666666666666 | 0.19602156
brassinosteroid biosynthesis | 16 | 0 | 1 | 0 | 2 | 3 | 5 |  |  |  | 0.8572115384615384 |  |  | 0.6190463512 |  | 10.61309523809524 | 0.0143586 | 2.6745 | 0.09636302 | 4.037590579710145 | 0.005616471
Calvin cycle | 27 | 0 | 0 | 2 | 0 | 4 | 5 |  |  | 0.396303873 |  | 0.25610711 | 1.128838239949351 | 0.6960669059 |  |  |  | 2.113185185185185 | 0.11552682 | 2.392646269457863 | 0.052143471
carbon monoxide dehydrogenase pathway | 12 | 1 | 1 | 0 | 1 | 1 | 0 |  | 1.564035087719298 | 0.482697686 | 1.142948717948718 | 0.598035079 |  |  |  | 7.075396825396824 | 0.13291375 | 1.188666666666667 | 0.58314908 |  | 0.615737242
carnitine metabolism | 3 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 4.754666666666666 | 0.19602156
carnitine metabolism, CoA-linked | 3 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 4.754666666666666 | 0.19602156
carotenoid biosynthesis | 9 | 0 | 0 | 0 | 0 | 1 | 1 |  |  |  |  |  |  |  |  |  |  | 1.584888888888889 | 0.48091872 | 1.435587761674718 | 0.5165039
catechol 'ortho'-cleavage | 4 | 1 | 1 | 0 | 0 | 0 | 0 |  | 4.692105263157894 | 0.196840065 | 3.428846153846154 | 0.261465225
cellulose biosynthesis | 28 | 0 | 0 | 0 | 0 | 0 | 1 |  |  | 0.397647946 |  | 0.260086063 |  | 0.2538265299 |  |  |  |  | 0.25640352 | 0.4614389233954451 | 0.719155413
chorismate biosynthesis | 9 | 0 | 1 | 1 | 0 | 0 | 4 |  |  |  | 1.523931623931624 | 0.494871709 | 1.693257359924026 | 0.4578804836 |  |  |  |  |  | 5.742351046698872 | 0.003186904
CO<SUB>2</SUB> formation from methanol | 7 | 1 | 1 | 0 | 1 | 1 | 0 |  | 2.681203007518797 | 0.318824377 | 1.959340659340659 | 0.411905282 |  |  |  | 12.12925170068027 | 0.07971824 | 2.037714285714285 | 0.39931655
colanic acid biosynthesis | 18 | 3 | 3 | 5 | 0 | 3 | 1 |  | 3.128070175438596 | 0.06685177 | 2.285897435897436 | 0.138554072 | 4.233143399810067 | 0.0047937731 |  |  |  | 2.377333333333333 | 0.12699509 | 0.717793880837359
cyanate catabolism | 10 | 1 | 0 | 0 | 0 | 2 | 3 |  | 1.876842105263158 | 0.422446986 |  |  |  |  |  |  |  | 2.8528 | 0.15173809 | 3.876086956521739 | 0.0363566
cysteine biosynthesis I | 13 | 0 | 3 | 0 | 0 | 0 | 0 |  |  |  | 3.16508875739645 | 0.063150263 |  |  |  |  |  |  |  |  | 0.615918055
deoxyribonucleotide metabolism | 2 | 0 | 1 | 0 | 0 | 0 | 0 |  |  |  | 6.857692307692307 | 0.140543593
dissimilatory sulfate reduction | 7 | 0 | 0 | 0 | 0 | 1 | 1 |  |  |  |  |  |  |  |  |  |  | 2.037714285714285 | 0.39931655 | 1.84575569358178 | 0.431576902
ethylene biosynthesis from methionine | 13 | 1 | 0 | 0 | 1 | 1 | 1 |  | 1.443724696356275 | 0.510446822 |  | 0.616419697 |  |  |  | 6.531135531135531 | 0.1431954 | 1.097230769230769 | 0.61257108 | 0.9938684503901896
fatty acid biosynthesis, initial steps | 6 | 0 | 0 | 0 | 1 | 0 | 0 |  |  |  |  |  |  |  |  | 14.15079365079365 | 0.06871259
fatty acid elongation, saturated | 4 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 3.230072463768116 | 0.275671678
fatty acid elongation, unsaturated | 4 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 3.230072463768116 | 0.275671678
fatty acid oxidation pathway | 11 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 1.385392385392386 | 0.5270496709
flavonoid biosynthesis | 42 | 6 | 9 | 6 | 0 | 3 | 3 |  | 2.681203007518797 | 0.021571808 | 2.939010989010989 | 0.002487925 | 2.177045177045177 | 0.0527634867 |  |  |  | 1.018857142857143 |  | 0.9228778467908901
folate biosynthesis | 11 | 0 | 0 | 0 | 0 | 1 | 3 |  |  |  |  |  |  |  |  |  |  | 1.296727272727273 | 0.55151195 | 3.523715415019762 | 0.047221682
[NAME] biosynthesis | 11 | 0 | 1 | 0 | 0 | 0 | 1 |  |  |  | 1.246853146853147 | 0.566210816 |  |  |  |  |  |  |  | 1.174571805006588 | 0.588820286
galactose metabolism | 11 | 2 | 2 | 4 | 0 | 2 | 1 |  | 3.41244019138756 | 0.112985416 | 2.493706293706293 | 0.188658453 | 5.541569541569542 | 0.0040547238 |  |  |  | 2.593454545454545 | 0.17731833 | 1.174571805006588 | 0.588820286
galactose, galactoside and glucose catabolism | 26 | 1 | 4 | 2 | 0 | 2 | 2 |  | 0.7218623481781377 |  | 2.110059171597633 | 0.1157653 | 1.172255095332019 | 0.686634807 |  |  |  | 1.097230769230769 | 0.7034267 | 0.9938684503901896
[NAME] biosynthesis | 5 | 1 | 0 | 0 | 0 | 1 | 0 |  | 3.753684210526316 | 0.239729438 |  |  |  |  |  |  |  | 2.8528 | 0.30500456
gluconeogenesis | 33 | 0 | 0 | 3 | 0 | 3 | 4 |  |  | 0.4170306 |  | 0.167319294 | 1.385392385392386 | 0.4739666145 |  |  |  | 1.296727272727273 | 0.49994432 | 1.566095740008783 | 0.317182689
glucose 1-phosphate metabolism | 7 | 0 | 2 | 1 | 0 | 0 | 0 |  |  |  | 3.918681318681318 | 0.086971345 | 2.177045177045177 | 0.3786941413
glucosinolate biosynthesis from homomethionine | 5 | 0 | 0 | 0 | 0 | 2 | 1 |  |  |  |  |  |  |  |  |  |  | 5.7056 | 0.04238536 | 2.584057971014493 | 0.331859035
glucosinolate biosynthesis from tryptophan | 3 | 0 | 1 | 1 | 0 | 0 | 0 |  |  |  | 4.571794871794872 | 0.203277637 | 5.07977207977208 | 0.1843204118
glutamate degradation I | 5 | 2 | 1 | 0 | 0 | 0 | 0 |  | 7.507368421052631 | 0.025282575 | 2.743076923076923 | 0.315433477
glutamate degradation III | 5 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 3.047863247863248 | 0.288054232
glutamate degradation VII | 13 | 0 | 0 | 2 | 0 | 1 | 1 |  |  |  |  | 0.616419697 | 2.344510190664037 | 0.2080915428 |  |  |  | 1.097230769230769 | 0.61257108 | 0.9938684503901896
glutamine biosynthesis I | 7 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 1.84575569358178 | 0.431576902
glutathione biosynthesis | 2 | 1 | 1 | 0 | 0 | 0 | 0 |  | 9.384210526315789 | 0.103751417 | 6.857692307692307 | 0.140543593
glyceraldehyde 3-phosphate catabolism | 18 | 0 | 0 | 2 | 0 | 2 | 1 |  |  | 0.619908765 |  | 0.636362385 | 1.693257359924026 | 0.3329168002 |  |  |  | 1.584888888888889 | 0.36332018 | 0.717793880837359
glycerol metabolism | 7 | 1 | 1 | 0 | 0 | 0 | 0 |  | 2.681203007518797 | 0.318824377 | 1.959340659340659 | 0.411905282
glycine biosynthesis I | 6 | 0 | 1 | 0 | 0 | 1 | 0 |  |  |  | 2.285897435897436 | 0.365486148 |  |  |  |  |  | 2.377333333333333 | 0.35386532
glycogen catabolism | 12 | 0 | 1 | 0 | 0 | 0 | 3 |  |  |  | 1.142948717948718 | 0.598035079 |  |  |  |  |  |  |  | 3.230072463768116 | 0.059489523
glycolysis | 44 | 0 | 1 | 4 | 0 | 3 | 3 |  |  | 0.168183452 | 0.3117132867132867 | 0.369317318 | 1.385392385392386 | 0.5287706598 |  |  |  | 0.9725454545454545 |  | 0.8809288537549406
glycolysis 4 | 48 | 1 | 2 | 4 | 0 | 3 | 3 |  | 0.3910087719298245 | 0.513705185 | 0.5714743589743589 | 0.575913446 | 1.26994301994302 | 0.5519164511 |  |  |  | 0.8915 |  | 0.8075181159420289
glycosylglyceride biosynthesis | 7 | 0 | 2 | 1 | 0 | 0 | 0 |  |  |  | 3.918681318681318 | 0.086971345 | 2.177045177045177 | 0.3786941413
glyoxylate cycle | 10 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 1.4264 | 0.51749434
histidine biosynthesis I | 7 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 2.037714285714285 | 0.39931655
homocysteine and cysteine interconversion | 3 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 4.754666666666666 | 0.19602156
homogalacturonan degradation | 127 | 3 | 4 | 2 | 3 | 8 | 3 |  | 0.4433485288023207 | 0.150597393 | 0.4319806178073894 | 0.074207663 | 0.2399892321152164 | 0.0142354722 |  | 2.00562429696288 | 0.18431809 | 0.8985196850393701 | 0.85821307 | 0.3052036973639164 | 0.014788096
homoserine biosynthesis | 4 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 3.566 | 0.25248072
isoleucine degradation I | 8 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 1.90491452991453 | 0.4196247638
isopentenyl diphosphate biosynthesis, mevalonate-independent | 2 | 1 | 0 | 0 | 0 | 0 | 1 |  | 9.384210526315789 | 0.103751417 |  |  |  |  |  |  |  |  |  | 6.460144927536231 | 0.148844965
[NAME] biosynthesis | 10 | 0 | 0 | 0 | 1 | 2 | 2 |  |  |  |  |  |  |  |  | 8.49047619047619 | 0.11199685 | 2.8528 | 0.15173809 | 2.584057971014493 | 0.178002121
lactose degradation 2 | 14 | 1 | 2 | 0 | 0 | 1 | 2 |  | 1.340601503759398 | 0.536722275 | 1.959340659340659 | 0.271916806 |  |  |  |  |  | 1.018857142857143 |  | 1.84575569358178 | 0.296033378
lactose degradation 3 | 14 | 1 | 2 | 0 | 0 | 1 | 2 |  | 1.340601503759398 | 0.536722275 | 1.959340659340659 | 0.271916806 |  |  |  |  |  | 1.018857142857143 |  | 1.84575569358178 | 0.296033378
lactose degradation 4 | 29 | 3 | 5 | 3 | 0 | 3 | 3 |  | 1.941560798548094 | 0.198186056 | 2.36472148541114 | 0.054851994 | 1.576480990274094 | 0.4331456098 |  |  |  | 1.475586206896552 | 0.45180792 | 1.336581709145427 | 0.486980737
leucine biosynthesis | 12 | 1 | 1 | 0 | 1 | 1 | 2 |  | 1.564035087719298 | 0.482697686 | 1.142948717948718 | 0.598035079 |  |  |  | 7.075396825396824 | 0.13291375 | 1.188666666666667 | 0.58314908 | 2.153381642512077 | 0.236579424
leucine degradation I | 4 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 3.230072463768116 | 0.275671678
lignin biosynthesis | 22 | 6 | 4 | 3 | 0 | 2 | 0 |  | 5.118660287081339 | 0.000728155 | 2.493706293706293 | 0.070728754 | 2.078088578088578 | 0.1713262657 |  |  |  | 1.296727272727273 | 0.66384752 |  | 0.407565319
lipases pathway | 9 | 0 | 1 | 1 | 0 | 0 | 1 |  |  |  | 1.523931623931624 | 0.494871709 | 1.693257359924026 | 0.4578804836 |  |  |  |  |  | 1.435587761674718 | 0.5165039
lipoxygenase pathway | 8 | 0 | 0 | 0 | 0 | 1 | 2 |  |  |  |  |  |  |  |  |  |  | 1.783 | 0.44159438 | 3.230072463768116 | 0.122400825
lysine and diaminopimelate biosynthesis | 14 | 0 | 0 | 1 | 1 | 2 | 0 |  |  |  |  | 0.617019823 | 1.088522588522588 | 0.614728979 |  | 6.064625850340136 | 0.15336088 | 2.037714285714285 | 0.25688069 |  | 0.618388464
Lysine degradation 1 | 2 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 6.460144927536231 | 0.148844965
maltose catabolism | 1 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 12.92028985507246 | 0.077397644
mannose and GDP-mannose metabolism | 6 | 1 | 0 | 1 | 0 | 1 | 0 |  | 3.128070175438596 | 0.280351318 |  |  | 2.53988603988604 | 0.3349033067 |  |  |  | 2.377333333333333 | 0.35386532
methionine biosynthesis from homoserine | 5 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 2.8528 | 0.30500456
methionine degradation 1 | 5 | 1 | 1 | 1 | 1 | 1 | 0 |  | 3.753684210526316 | 0.239729438 | 2.743076923076923 | 0.315433477 | 3.047863247863248 | 0.288054232 |  | 16.98095238095238 | 0.05758167 | 2.8528 | 0.30500456
methylglyoxal metabolism | 2 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 7.132 | 0.13533478
mevalonate pathway | 9 | 0 | 0 | 2 | 0 | 0 | 1 |  |  |  |  |  | 3.386514719848053 | 0.1135790054 |  |  |  |  |  | 1.435587761674718 | 0.5165039
nitrate assimilation pathway | 10 | 1 | 0 | 0 | 1 | 0 | 1 |  | 1.876842105263158 | 0.422446986 |  |  |  |  |  | 8.49047619047619 | 0.11199685 |  |  | 1.292028985507246 | 0.554115209
non-oxidative branch of the pentose phosphate pathway | 11 | 0 | 0 | 1 | 0 | 0 | 2 |  |  |  |  |  | 1.385392385392386 | 0.5270496709 |  |  |  |  |  | 2.349143610013175 | 0.207064441
non-phosphorylated glucose catabolism | 17 | 0 | 1 | 1 | 0 | 0 | 0 |  |  |  | 0.806787330316742 |  | 0.8964303670186022 |  |  |  |  |  | 0.62603037 |  | 0.636204388
nopaline degradation | 2 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 7.619658119658119 | 0.1269679408
nucleotide metabolism | 22 | 0 | 2 | 1 | 2 | 2 | 3 |  |  | 0.626851391 | 1.246853146853147 | 0.6720129 | 0.6926961926961928 |  |  | 7.718614718614718 | 0.02649093 | 1.296727272727273 | 0.66384752 | 1.761857707509881 | 0.239468223
octopine degradation | 2 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 7.619658119658119 | 0.1269679408
ornithine spermine biosynthesis | 4 | 1 | 0 | 0 | 0 | 0 | 0 |  | 4.692105263157894 | 0.196840065
oxidative branch of the pentose phosphate pathway | 14 | 0 | 1 | 1 | 0 | 1 | 1 |  |  |  | 0.9796703296703295 |  | 1.088522588522588 | 0.614728979 |  |  |  | 1.018857142857143 |  | 0.9228778467908901
pantothenate and coenzyme A biosynthesis | 5 | 0 | 1 | 0 | 0 | 0 | 0 |  |  |  | 2.743076923076923 | 0.315433477
phenylalanine biosynthesis, Bacillus subtilis | 14 | 2 | 2 | 1 | 0 | 1 | 1 |  | 2.681203007518797 | 0.168865933 | 1.959340659340659 | 0.271916806 | 1.088522588522588 | 0.614728979 |  |  |  | 1.018857142857143 |  | 0.9228778467908901
[NAME], initial reactions | 7 | 3 | 3 | 2 | 0 | 1 | 0 |  | 8.04360902255639 | 0.004387705 | 5.878021978021978 | 0.010667077 | 4.354090354090354 | 0.072158299 |  |  |  | 2.037714285714285 | 0.39931655
phosphatidic acid synthesis | 4 | 0 | 0 | 0 | 0 | 2 | 1 |  |  |  |  |  |  |  |  |  |  | 7.132 | 0.02664407 | 3.230072463768116 | 0.275671678
phospholipid biosynthesis II | 13 | 1 | 0 | 0 | 0 | 0 | 0 |  | 1.443724696356275 | 0.510446822 |  | 0.616419697 |  |  |  |  |  |  |  |  | 0.615918055
photorespiration | 9 | 0 | 0 | 0 | 0 | 2 | 1 |  |  |  |  |  |  |  |  |  |  | 3.169777777777778 | 0.12699966 | 1.435587761674718 | 0.5165039
phytoalexin biosynthesis | 20 | 5 | 5 | 4 | 0 | 2 | 1 |  | 4.692105263157894 | 0.003163891 | 3.428846153846154 | 0.012127522 | 3.047863247863248 | 0.0376135825 |  |  |  | 1.4264 | 0.64640265 | 0.6460144927536232
polyamine biosynthesis III | 10 | 2 | 2 | 3 | 0 | 0 | 0 |  | 3.753684210526316 | 0.095659991 | 2.743076923076923 | 0.161726218 | 4.571794871794872 | 0.0235249548
polyisoprenoid biosynthesis | 6 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 2.53988603988604 | 0.3349033067
ppGpp metabolism | 2 | 1 | 1 | 0 | 0 | 0 | 1 |  | 9.384210526315789 | 0.103751417 | 6.857692307692307 | 0.140543593 |  |  |  |  |  |  |  | 6.460144927536231 | 0.148844965
protocatechuate ortho-cleavage | 4 | 1 | 1 | 0 | 0 | 0 | 0 |  | 4.692105263157894 | 0.196840065 | 3.428846153846154 | 0.261465225
PRPP biosynthesis | 9 | 0 | 0 | 1 | 1 | 0 | 2 |  |  |  |  |  | 1.693257359924026 | 0.4578804836 |  | 9.433862433862434 | 0.10135905 |  |  | 2.871175523349436 | 0.149673017
purine biosynthesis | 15 | 1 | 1 | 1 | 2 | 1 | 1 |  | 1.251228070175439 | 0.56160152 | 0.9143589743589743 |  | 1.015954415954416 |  |  | 11.32063492063492 | 0.01265319 | 0.9509333333333333 |  | 0.8613526570048309
[NAME] synthesis | 2 | 0 | 0 | 1 | 0 | 0 | 0 |  |  |  |  |  | 7.619658119658119 | 0.1269679408
pyridoxal 5'-phosphate biosynthesis | 3 | 2 | 1 | 0 | 0 | 0 | 0 |  | 12.51228070175438 | 0.008138149 | 4.571794871794872 | 0.203277637
pyridoxal 5'-phosphate salvage pathway | 2 | 1 | 1 | 0 | 0 | 0 | 0 |  | 9.384210526315789 | 0.103751417 | 6.857692307692307 | 0.140543593
pyrimidine ribonucleotide/ribonucleoside metabolism | 22 | 0 | 1 | 0 | 0 | 2 | 0 |  |  | 0.626851391 | 0.6234265734265734 |  |  | 0.393931694 |  |  |  | 1.296727272727273 | 0.66384752 |  | 0.407565319
pyruvate dehydrogenase | 8 | 0 | 0 | 0 | 0 | 0 | 2 |  |  |  |  |  |  |  |  |  |  |  |  | 3.230072463768116 | 0.122400825
ribose catabolism | 8 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 1.615036231884058 | 0.475744913
salicylic acid biosynthesis | 6 | 2 | 2 | 2 | 0 | 1 | 0 |  | 6.256140350877192 | 0.036620036 | 4.571794871794872 | 0.065170126 | 5.07977207977208 | 0.0538088584 |  |  |  | 2.377333333333333 | 0.35386532
serine biosynthesis | 5 | 1 | 0 | 0 | 0 | 1 | 0 |  | 3.753684210526316 | 0.239729438 |  |  |  |  |  |  |  | 2.8528 | 0.30500456
serine-isocitrate lyase pathway | 21 | 0 | 1 | 1 | 0 | 1 | 0 |  |  | 0.623739785 | 0.653113553113553 |  | 0.7256817256817256 |  |  |  |  | 0.6792380952380952 |  |  | 0.400697106
sinapoyl ester biosynthesis | 3 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 4.306763285024154 | 0.214796338
starch biosynthesis | 16 | 0 | 1 | 1 | 0 | 1 | 1 |  |  |  | 0.8572115384615384 |  | 0.9524572649572649 |  |  |  |  | 0.8915 |  | 0.8075181159420289
starch degradation | 20 | 2 | 1 | 2 | 1 | 1 | 6 |  | 1.876842105263158 | 0.288970004 | 0.6857692307692308 |  | 1.523931623931624 | 0.3817688691 |  | 4.245238095238095 | 0.21198303 | 0.7132000000000001 |  | 3.876086956521739 | 0.003015046
suberin biosynthesis | 14 | 4 | 4 | 2 | 0 | 2 | 0 |  | 5.362406015037593 | 0.005012955 | 3.918681318681318 | 0.015206486 | 2.177045177045177 | 0.2329540653 |  |  |  | 2.037714285714285 | 0.25688069 |  | 0.618388464
sucrose biosynthesis | 31 | 1 | 4 | 7 | 0 | 1 | 2 |  | 0.6054329371816638 |  | 1.769727047146402 | 0.279015211 | 3.441135925006892 | 0.0030723831 |  |  |  | 0.4601290322580645 | 0.72010423 | 0.8335670874240299
sucrose degradation | 44 | 3 | 5 | 5 | 0 | 2 | 4 |  | 1.279665071770335 | 0.506336826 | 1.558566433566433 | 0.247563438 | 1.731740481740482 | 0.2060999919 |  |  |  | 0.6483636363636364 | 0.76540365 | 1.174571805006588 | 0.771790495
sulfur assimilation | 24 | 0 | 3 | 0 | 0 | 3 | 1 |  |  | 0.635238526 | 1.714423076923077 | 0.413211235 |  | 0.3993997295 |  |  |  | 1.783 | 0.23423332 | 0.5383454106280192
superpathway for gluconate utilization | 8 | 0 | 0 | 0 | 0 | 0 | 1 |  |  |  |  |  |  |  |  |  |  |  |  | 1.615036231884058 | 0.475744913
TCA cycle, aerobic respiration | 21 | 0 | 2 | 3 | 0 | 2 | 1 |  |  | 0.623739785 | 1.306227106227106 | 0.662189537 | 2.177045177045177 | 0.1549653577 |  |  |  | 1.35847619047619 | 0.65483644 | 0.6152518978605934
threonine D-lactate catabolism | 2 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 7.132 | 0.13533478
trehalose biosynthesis | 18 | 1 | 1 | 1 | 0 | 0 | 2 |  | 1.042690058479532 |  | 0.7619658119658119 |  | 0.8466286799620132 |  |  |  |  |  | 0.63183511 | 1.435587761674718 | 0.644686732
triacylglycerol biosynthesis | 6 | 1 | 0 | 0 | 0 | 1 | 0 |  | 3.128070175438596 | 0.280351318 |  |  |  |  |  |  |  | 2.377333333333333 | 0.35386532
triacylglycerol degradation | 26 | 1 | 1 | 0 | 0 | 2 | 4 |  | 0.7218623481781377 |  | 0.5275147928994083 |  |  | 0.4099115855 |  |  |  | 1.097230769230769 | 0.7034267 | 1.987736900780379 | 0.136217867
tRNA charging pathway | 43 | 1 | 2 | 0 | 0 | 0 | 1 |  | 0.4364749082007344 | 0.725628879 | 0.6379248658318425 | 0.765774341 |  | 0.1102504016 |  |  |  |  | 0.06939329 | 0.3004718570947084 | 0.250561747
tryptophan biosynthesis | 18 | 1 | 1 | 0 | 0 | 3 | 1 |  | 1.042690058479532 |  | 0.7619658119658119 |  |  | 0.6258649217 |  |  |  | 2.377333333333333 | 0.12699509 | 0.717793880837359
tyrosine degradation 1 | 13 | 2 | 2 | 1 | 0 | 2 | 2 |  | 2.887449392712551 | 0.149708055 | 2.110059171597633 | 0.243960954 | 1.172255095332019 | 0.5874593423 |  |  |  | 2.194461538461538 | 0.23008506 | 1.987736900780379 | 0.266305002
UDP-glucose conversion | 13 | 2 | 2 | 5 | 0 | 1 | 1 |  | 2.887449392712551 | 0.149708055 | 2.110059171597633 | 0.243960954 | 5.861275476660092 | 0.0009397578 |  |  |  | 1.097230769230769 | 0.61257108 | 0.9938684503901896
UDP-N-acetylgalactosamine biosynthesis | 3 | 1 | 0 | 0 | 0 | 0 | 0 |  | 6.256140350877192 | 0.151558051
ureide biosynthesis | 5 | 0 | 0 | 0 | 0 | 1 | 0 |  |  |  |  |  |  |  |  |  |  | 2.8528 | 0.30500456
valine degradation I | 8 | 0 | 1 | 1 | 0 | 0 | 1 |  |  |  | 1.714423076923077 | 0.454952755 | 1.90491452991453 | 0.4196247638 |  |  |  |  |  | 1.615036231884058 | 0.475744913
vitamin E biosynthesis | 5 | 0 | 0 | 0 | 1 | 1 | 0 |  |  |  |  |  |  |  |  | 16.98095238095238 | 0.05758167 | 2.8528 | 0.30500456
xanthophyll cycle | 2 | 0 | 0 | 0 | 0 | 1 | 1 |  |  |  |  |  |  |  |  |  |  | 7.132 | 0.13533478 | 6.460144927536231 | 0.148844965
xylulose-monophosphate cycle | 15 | 0 | 0 | 1 | 0 | 1 | 3 |  |  |  |  | 0.619586839 | 1.015954415954416 |  |  |  |  | 0.9509333333333333 |  | 2.584057971014493 | 0.103933281
Pathways with no expression changes
(deoxy)ribose phosphate metabolism | 6 | 0 | 0 | 0 | 0 | 0 | 0
acetate utilization | 2 | 0 | 0 | 0 | 0 | 0 | 0
acrylonitrile degradation | 2 | 0 | 0 | 0 | 0 | 0 | 0
aldoxime metabolism | 2 | 0 | 0 | 0 | 0 | 0 | 0
ascorbate biosynthesis | 7 | 0 | 0 | 0 | 0 | 0 | 0
asparagine biosynthesis and degradation | 2 | 0 | 0 | 0 | 0 | 0 | 0
Camalexin biosynthesis | 1 | 0 | 0 | 0 | 0 | 0 | 0
cutin biosynthesis | 1 | 0 | 0 | 0 | 0 | 0 | 0
Cytokinin biosynthesis | 7 | 0 | 0 | 0 | 0 | 0 | 0
D-arabinose catabolism | 2 | 0 | 0 | 0 | 0 | 0 | 0
degradation of short-chain fatty acids | 1 | 0 | 0 | 0 | 0 | 0 | 0
degradation of urate | 1 | 0 | 0 | 0 | 0 | 0 | 0
deoxypyrimidine nucleotide/side metabolism | 12 | 0 | 0 | 0 | 0 | 0 | 0 |  |  |  |  |  |  |  |  |  |  |  |  |  | 0.615737242
dissimilation of N-acetylglucosamine, N-acetylmannosamine and N-acetylneuraminic acid | 2 | 0 | 0 | 0 | 0 | 0 | 0
dTDP-rhamnose biosynthesis | 5 | 0 | 0 | 0 | 0 | 0 | 0
epicuticular wax biosynthesis | 2 | 0 | 0 | 0 | 0 | 0 | 0
glutamate degradationVIII | 4 | 0 | 0 | 0 | 0 | 0 | 0
glycine degradation III | 2 | 0 | 0 | 0 | 0 | 0 | 0
glycosylglyceride desaturation pathway | 4 | 0 | 0 | 0 | 0 | 0 | 0
homomethionine biosynthesis | 1 | 0 | 0 | 0 | 0 | 0 | 0
isoleucine biosynthesis I | 6 | 0 | 0 | 0 | 0 | 0 | 0
L-cysteine degradation IV | 1 | 0 | 0 | 0 | 0 | 0 | 0
L-serine degradation | 2 | 0 | 0 | 0 | 0 | 0 | 0
lysine degradation III | 1 | 0 | 0 | 0 | 0 | 0 | 0
mannosyl-chito-dolichol biosynthesis | 1 | 0 | 0 | 0 | 0 | 0 | 0
phospholipid desaturation pathway | 5 | 0 | 0 | 0 | 0 | 0 | 0
proanthocyanidin biosynthesis from flavanols | 1 | 0 | 0 | 0 | 0 | 0 | 0
proline biosynthesis I | 1 | 0 | 0 | 0 | 0 | 0 | 0
pyrimidine biosynthesis | 6 | 0 | 0 | 0 | 0 | 0 | 0
removal of superoxide radicals | 2 | 0 | 0 | 0 | 0 | 0 | 0
ribitol utilization | 2 | 0 | 0 | 0 | 0 | 0 | 0
sulfur oxidation | 1 | 0 | 0 | 0 | 0 | 0 | 0
thiamine biosynthesis | 1 | 0 | 0 | 0 | 0 | 0 | 0
[NAME] | 1 | 0 | 0 | 0 | 0 | 0 | 0
threonine biosynthesis from homoserine | 2 | 0 | 0 | 0 | 0 | 0 | 0
trehalose degradation, low osmolarity | 1 | 0 | 0 | 0 | 0 | 0 | 0
tryptophan degradation III | 1 | 0 | 0 | 0 | 0 | 0 | 0
ureide degradation | 1 | 0 | 0 | 0 | 0 | 0 | 0
valine biosynthesis | 5 | 0 | 0 | 0 | 0 | 0 | 0
xylose catabolism | 3 | 0 | 0 | 0 | 0 | 0 | 0