Spreadsheet: 61d0b806-3dc6-47df-9efc-454f7fbbf05d
Sheet: Sheet1

light experiment | Unnamed: 1 | fold change | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | ± standard error | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17 | Unnamed: 18 | Unnamed: 19
probes | gene name | HL-dark | WL-dark | Blue-dark | Red-dark | Green-dark | DCMU-WL | HL-dark | WL-dark | Blue-dark | Red-dark | Green-dark | DCMU-WL
MED4_RNA_0001_x_at | tmRNA | -1.313773666109478 | -1.289815559847381 | -1.068394928661197 | -1.107421806392666 | -1.036283813876168 | 1.112586564123834 | 2.41762840878604 | 1.399902888587826 | 1.422346864345755 | 1.982610765810082 | 1.478105217194594 | 1.631835150411091
MED4_IG_0367f11-16 | Yfr8 | -3.555448208835577 | -1.586877311141713 | -1.743922323569667 | -1.321476918793904 | 1.002559636036705 | 1.496034834605509 | 1.832266052958242 | 1.423056879171862 | 1.687524214303499 | 1.480772645163032 | 1.405025634805024 | 1.591129422033065
MED4_IG_0367r3-5 | Yfr9 | -1.452294631475275 | -1.39883255647168 | 1.103557563888745 | 2.143172110191609 | 1.162783639875786 | 1.620817212307677 | 1.784122209995052 | 1.542134151238199 | 1.572518252699515 | 2.669159441370532 | 1.648397767289477 | 1.392277106791349
MED4_IG_0375f18-20 | Yfr10 | -1.448274004716051 | -1.445433624811974 | -1.490417466088703 | -1.073290494575835 | 1.025743681201532 | 1.433934819355614 | 2.127258486038089 | 1.392155142693218 | 1.461228028005598 | 1.792040315295824 | 1.294547828734094 | 1.713002406108469
MED4_IG_0375f22 | Yfr2 | -1.352940009411269 | -2.317772660897244 | 1.064063260203798 | -1.339845198813194 | -1.624050303240066 | 1.349082259165627 | 1.931258981128148 | 1.285268688270393 | 1.282966057196355 | 1.9687934174869 | 1.298032476331122 | 1.693054298484232
MED4_IG_0390r20-22 | Yfr11 | -3.901343309667777 | -2.363008341436507 | -2.775769094441145 | -1.837738939444949 | -1.034612675779577 | 2.140763212559865 | 1.610039662946922 | 1.241874249274511 | 1.342988803134571 | 1.582219648489595 | 1.210052773288079 | 1.388341671269852
MED4_IG_0418f17 | Yfr4 | 1.099327477807279 | -1.407240132118807 | 1.503255128881976 | -1.282271333385364 | -1.312634361171804 | -1.402087674148344 | 1.646972002540728 | 1.144480956777266 | 1.141863509669585 | 1.571640358491695 | 1.144003630393368 | 1.399475496337875
MED4_IG_0668r5-6 | Yfr13 | -1.17852555278924 | -1.658727620058556 | -1.351778396891596 | 1.216246639696839 | -1.078786567236548 | 1.353024523822804 | 2.52441228894652 | 1.431108624247898 | 1.457523837533014 | 2.255970831768071 | 1.348875752751581 | 1.950081762056188
MED4_IG_0676f22-24 | Yfr14 | 1.067910169114745 | -1.408274302479024 | 1.167937393071398 | 1.305175323324568 | 1.206162013468328 | 1.805534467381473 | 1.416464335797965 | 1.472758304324871 | 1.45334658778801 | 1.527619439900548 | 1.318127152074731 | 1.498212681597263
MED4_IG_0676r9-13 | Yfr6 | 1.088392044469238 | 1.106736959829389 | 1.087921287463838 | -1.052521588866871 | 1.152444762483215 | 1.046748974520671 | 1.226510120218434 | 1.144552367282904 | 1.160063848525364 | 1.294783233844621 | 1.210201535718218 | 1.270803731810129
MED4_IG_0700f1-4 | Yfr7 | -1.358679285395919 | -1.618942567248497 | -1.05315265986423 | 1.156069125891007 | -1.015036670926764 | 1.051946982004497 | 1.871911379969733 | 1.29319966294054 | 1.315048515992276 | 1.826901441983501 | 1.601346288906923 | 1.805873353037217
MED4_IG_0702r18-21 | Yfr15 | -1.050457042541 | 1.046308993109899 | -1.013527556847819 | 1.155763926830931 | 1.107005217067089 | -1.00116162573249 | 1.241654909580245 | 1.199837076331369 | 1.28420505656285 | 1.268310494523452 | 1.699025727033078 | 1.337749981954341
MED4_IG_0704r24 | Yfr16 | -2.197676114485887 | -1.413559125572824 | -1.378984878013507 | -1.561109654034374 | -1.083045399216636 | 1.245168090148818 | 1.10452151952691 | 1.125274117230268 | 1.091892957574866 | 1.14977119591696 | 1.089983808466938 | 1.199489535082587
MED4_IG_0714f11-14 | Yfr17 | 1.039165647585264 | -1.01959984521012 | 1.08282547416086 | 1.114162715385384 | 1.015541962475366 | 1.015286090292214 | 1.592032755314201 | 1.376015473617317 | 1.327924749653444 | 1.417321439634025 | 1.505359584453763 | 1.600982838659719
MED4_IG_1047r16 | Yfr5 | -1.518200223997925 | -2.476764889972042 | -1.063028800021032 | -1.343895169469778 | -1.250985128208443 | 1.107917788344689 | 1.690891807675753 | 1.111523358165274 | 1.080821372325805 | 1.817820259564857 | 1.133222237839345 | 1.390369426249094
MED4_IG_1142r21-25 | Yfr21 | 1.448601504775191 | 1.25886324249111 | 1.236352834058678 | 1.09232349153476 | 1.020119133577338 | -1.250985128208443 | 1.305423448815173 | 1.38197878342201 | 1.270821131383762 | 1.349069872969773 | 1.332232230708793 | 1.562301962065458
MED4_IG_1157r8 | Yfr19 | -2.269558230769747 | -2.20135480893319 | -2.39508523298106 | -1.076089827132861 | 1.024897572777884 | 2.115171714213024 | 1.339661412484605 | 1.154993209818558 | 1.20503189302951 | 1.337995506618715 | 1.130140463616332 | 1.107475702338588
MED4_RNA_0033_at | ffs | -1.165012440348707 | -1.084409762422361 | -1.015970099093637 | 1.014793146645216 | -1.024442112714949 | -1.635140294227709 | 1.669526825781469 | 1.267164514509574 | 1.239611108027894 | 1.455955142191365 | 1.24542575139032 | 7.050006272952583
MED4_IG_1412f32-33 | Yfr20 | 3.962180412479998 | 1.004738038698335 | 1.542348923608951 | 1.051372442093458 | -1.10662423198391 | -1.152462456891352 | 1.514336860891705 | 1.13668645024704 | 1.252513975392587 | 1.373967983911089 | 1.181658892488943 | 1.603443823107095
MED4_RNA_0041_x_at | rnpB | -1.109947132665813 | -1.076647282975592 | -1.005096340822565 | -1.026674947393487 | 1.05118858848584 | 1.114510237619816 | 1.47895562952984 | 1.409526580803625 | 1.398519395097933 | 1.397963741745676 | 1.476548259900686 | 1.442692493842606
phage experiment |  | fold change phage-infected cells /control cells |  |  |  |  |  |  |  |  |  | ± standard error  phage-infected cells /control cells
probes | gene name | 0 h | 1 h | 2 h | 3 h | 4 h | 5 h | 6 h | 7 h | 8 h | 0 h | 1 h | 2 h | 3 h | 4 h | 5 h | 6 h | 7 h | 8 h
MED4_RNA_0001_x_at | tmRNA | 1.049590624135989 | 1.106001545983043 | 1.146273428367325 | 1.109832490254893 | 1.296488075714776 | 1.269564863059932 | 1.244970153389008 | 1.183761011507066 | -1.0113644690418 | 1.687870100888709 | 1.342448010533528 | 1.423400065460517 | 1.424134647694013 | 1.899259482241636 | 1.406219535417846 | 1.456163115598206 | 1.540128005013941 | 1.509495695039324
MED4_IG_0367f11-16 | Yfr8 | -1.301911407255317 | 1.079313845665202 | 1.155806859684601 | 1.052194623627951 | -1.342748321898933 | -1.282460844878287 | -1.423376164994543 | -1.373045011179016 | -1.444617013165714 | 1.538281199081107 | 1.298989137957036 | 1.200939479353577 | 1.235821812676218 | 1.244970650937523 | 1.243202977382693 | 1.21227008426455 | 1.419234069828923 | 1.442262487348505
MED4_IG_0367r3-5 | Yfr9 | -1.412320484344039 | 2.127632864953654 | 1.941693495335752 | 2.661150176905429 | -1.113843531952713 | -1.111160164872319 | -1.28100180656181 | -1.254025575235033 | 1.160877252348657 | 1.467355710858957 | 1.330395122632129 | 1.22550545183295 | 1.380022914222993 | 1.608662949856739 | 1.472684460871005 | 1.448231297605016 | 1.505146178161242 | 1.454870065985454
MED4_IG_0375f18-20 | Yfr10 | 1.080206065824719 | 1.016679084217497 | -1.009641127146018 | -1.127636713591722 | -1.136142021106762 | -1.097518165852868 | -1.097768211317419 | -1.185360338392635 | -1.10150938388833 | 1.229696467989678 | 1.25429949903119 | 1.266938123787998 | 1.234799579316163 | 1.32229334938988 | 1.187349745483286 | 1.12942526889426 | 1.186483758587556 | 1.211724860415812
MED4_IG_0375f22 | Yfr2 | 1.133795563230015 | 1.137931036033165 | 1.30212806996319 | -1.057513784836012 | -0.7483902606790888 | 1.135164541132518 | 1.031314371891977 | -1.026189864041953 | -0.8966038558026189 | 1.228084750309467 | 1.177276601811856 | 1.150031683825079 | 1.224366117760957 | 1.185890120577917 | 1.198077497974967 | 1.174143802806606 | 1.227911711785674 | 1.343996107875534
MED4_IG_0390r20-22 | Yfr11 | -1.230467848445845 | 1.012344999588049 | 1.088361919652382 | -1.023532462590236 | -1.28475849590369 | -1.32602856425319 | -1.395309420992 | -1.539609021057367 | -1.351232521121426 | 1.47033608268842 | 1.163375007803378 | 1.240357324264491 | 1.176456057064797 | 1.20160266762279 | 1.228268001275094 | 1.188704486573326 | 1.270477654007514 | 1.356503294502106
MED4_IG_0418f17 | Yfr4 | 1.05484466840613 | -1.318427015670618 | -1.011677788222345 | -1.205630504547501 | 1.098495319302773 | 1.317678787895689 | 1.123377844472225 | -1.062188563601967 | 1.014384668843705 | 1.090661283747874 | 1.156461299232654 | 1.190740150644071 | 1.195131792385946 | 1.196332488989147 | 1.275575916145772 | 1.27286638981659 | 1.252871583104234 | 1.327453340059411
MED4_IG_0668r5-6 | Yfr13 | -1.025714386042552 | 1.174768602930995 | 1.125068871665894 | 1.043762583442946 | -1.027998962232646 | 1.038522038315921 | -1.10703467482077 | -1.043172541256799 | -1.245837292796333 | 1.217287687642735 | 1.077293684146536 | 1.136883615337331 | 1.12470853496784 | 1.27039756691786 | 1.799369930833376 | 1.62854446517436 | 1.704178813215281 | 1.518216685313151
MED4_IG_0676f22-24 | Yfr14 | -1.225547427490437 | 1.824358674074756 | 1.800964664054151 | 2.116592846352781 | 1.075332751570661 | 1.102736323774941 | 1.213083299340575 | 1.170777010887649 | 1.082390325019571 | 1.225915168375182 | 1.13175426576443 | 1.460155620526256 | 1.195203836924992 | 1.445923093633303 | 1.279333738444213 | 1.241941997027175 | 1.268612516668953 | 1.203916587991807
MED4_IG_0676r9-13 | Yfr6 | -1.136674949752806 | 1.049683179876763 | 1.078410068986975 | 1.110456843940895 | 1.040504041166046 | 1.064453774385396 | 1.091637593433634 | 1.027632403064435 | -1.160272028872123 | 1.502514011921941 | 1.429716036610624 | 1.246764258492012 | 1.357206890474292 | 1.442609264562284 | 1.391169185209614 | 1.607105228558436 | 1.530849258176737 | 1.585588681632056
MED4_IG_0700f1-4 | Yfr7 | 1.070016898392707 | 1.172629848424198 | 1.356324286542884 | 1.381005552796509 | 1.025820825261061 | 1.215161741701289 | 1.229822154602203 | 1.155311128590609 | 1.055397730223167 | 1.279561698198777 | 1.226539897736806 | 1.164473466901199 | 1.115781796174879 | 1.210115293309333 | 1.20150628132246 | 1.199080106553564 | 1.18854880366247 | 1.276598505307178
MED4_IG_0702r18-21 | Yfr15 | 1.208358603676126 | -1.278603696701581 | 1.202638776600393 | 1.624575197323692 | 2.41289791655161 | 2.41063058289266 | 2.058914310834148 | 2.110283987552772 | 1.896322737906528 | 1.239258576719178 | 1.158787914885878 | 1.148161304921283 | 1.216736797335558 | 1.194279960378701 | 1.199392529004073 | 1.182918375989834 | 1.302620889286095 | 1.299678646934255
MED4_IG_0704r24 | Yfr16 | -1.09856096877137 | -1.269373571795181 | -1.103970899159574 | -1.412647702411659 | -1.226123662782627 | -1.171742566211077 | -1.206185077830146 | -1.667955364763216 | -1.60813957966889 | 1.185702192351885 | 1.12889758174481 | 1.255739197275381 | 1.104402661031634 | 1.208525946162927 | 1.089466855644689 | 1.07841901252743 | 1.119878392890123 | 1.266224203263505
MED4_IG_0714f11-14 | Yfr17 | 1.025200385738665 | -1.1796948190716 | -1.161948729875153 | -1.207758964725904 | 1.034149612720096 | -1.069308466144738 | -1.052698918368534 | 1.022199726928571 | 1.005708237588188 | 1.235086617608087 | 1.133591190191856 | 1.151395019209547 | 1.163332052183016 | 1.248965110786117 | 1.169821548920971 | 1.206164006095407 | 1.172699632978279 | 1.303516210590209
MED4_IG_1047r16 | Yfr5 | -1.093514976404823 | -1.168925094089798 | 1.04529647792261 | -1.395027033825607 | -1.046089370252556 | 1.211199203638035 | -1.043320473300157 | -1.124413913866756 | 1.222742584613826 | 1.218511065399849 | 1.233777886939626 | 1.156430316941005 | 1.211486859287101 | 1.228967945606242 | 1.124761817063186 | 1.334161045146047 | 1.257775296760633 | 1.271400361057575
MED4_IG_1142r21-25 | Yfr21 | 1.154645194444919 | -1.150682122014705 | 1.040265079151694 | 1.031855313573389 | 1.3301372960142 | 1.278055841886985 | 1.35448191973513 | 1.424535360470958 | 1.352434407375211 | 1.345488797072614 | 1.299309762727542 | 1.14351739410647 | 1.235419468153379 | 1.286148560763064 | 1.281586082806416 | 1.318250242974405 | 1.280711687258496 | 1.267600727736318
MED4_IG_1157r8 | Yfr19 | 1.112984769301171 | -1.306263289698313 | -1.150615823009319 | -1.36955551135762 | 1.075914306751026 | -1.017260945130916 | 1.018145540757883 | -1.045771197296551 | -1.23628267082497 | 1.199389419170624 | 1.076799631924509 | 1.1153781122929 | 1.142462207672661 | 1.219980785607484 | 1.116831656892139 | 1.098298861448589 | 1.125630496504492 | 1.083251158754891
MED4_RNA_0033_at | ffs | -1.016811774757886 | -1.079501343843972 | 1.00192283064728 | 1.03957959172689 | 1.036655709091975 | 1.003749121735373 | -1.020577267755734 | 1.010014445702891 | -1.097806729413458 | 1.470270441380592 | 1.206852403209439 | 1.272380042279695 | 1.346627425962636 | 1.285537242221028 | 1.305903453421234 | 1.357686902046753 | 1.331845876743339 | 1.474128004312768
MED4_IG_1412f32-33 | Yfr20 | 1.124760917367815 | 1.067148417066296 | 1.059787196913654 | 1.195668361357681 | 1.37047987216854 | 1.286828970964358 | 1.266155967232817 | 1.256357175248022 | 1.028699714081727 | 1.294755287648269 | 1.18948600680093 | 1.240755119120217 | 1.222595213667651 | 1.100399898823277 | 2.077315472527304 | 1.969148309804057 | 2.003658988342174 | 1.745469160123164
MED4_RNA_0041_x_at | rnpB | -1.040722011895644 | 1.173876915356644 | 1.152303539934296 | 1.208739623949869 | -1.009632296814296 | 1.048896429821293 | -1.035512390920571 | 1.030434935196604 | 1.144305476737875 | 2.024884783547463 | 1.38895713641493 | 1.114136542817994 | 1.34312413309478 | 1.488318916791199 | 1.338556651010127 | 1.386959994441624 | 1.628154196583452 | 1.839262842379753
phosphorus experiment |  | fold change phosphate deplete/phosphate replete cells |  |  |  |  | ± standard error phosphate deplete/phosphate replete cells
probes | gene name | 0 h | 4 h | 12 h | 24 h | 48 h | 0 h | 4 h | 12 h | 24 h | 48 h
MED4_RNA_0001_x_at | tmRNA | 1.019776348577468 | -1.112233073344557 | -1.118502302209006 | -1.128692961634152 | 1.077767173142977 | 1.45100235197236 | 1.908273448889378 | 1.706468363143626 | 1.598144290989835 | 2.165830975522987
MED4_IG_0367f11-16 | Yfr8 | 1.015617956526461 | 1.164760158247554 | -1.081689484234933 | -1.006656617157605 | -1.08744569392373 | 1.312135791688625 | 1.874044294960594 | 1.324023371876358 | 1.26166317781831 | 1.372355233949332
MED4_IG_0367r3-5 | Yfr9 | 1.643952170611299 | -1.153483558575573 | -1.728798443282342 | 1.642808621231471 | -2.005052056397892 | 1.826096538047203 | 2.355118822776211 | 1.921659127795783 | 1.784593958235727 | 1.9167545491349
MED4_IG_0375f18-20 | Yfr10 | -1.048193864223645 | -1.090446261861658 | -1.123473278102838 | -1.016523012307966 | 1.079308926402117 | 1.329476611801455 | 1.680303039328628 | 1.224114174506074 | 1.217505406741505 | 1.676981529676815
MED4_IG_0375f22 | Yfr2 | 1.029994838689528 | -1.470209757857299 | -1.277242561320481 | -1.173606087339293 | 1.395732782109058 | 1.080565479464288 | 1.883431617128633 | 1.314117807940695 | 1.273022783134077 | 1.415885453130174
MED4_IG_0390r20-22 | Yfr11 | -1.177794694696383 | 1.28234479583961 | -1.155186623581693 | -1.056828623135094 | 1.012321126242392 | 1.318281760355495 | 1.522999388772268 | 1.260124126805033 | 1.591863843402965 | 1.533334468930982
MED4_IG_0418f17 | Yfr4 | -1.094178838361455 | -1.089342063290836 | -1.18325998454871 | -1.774967225179598 | 1.047129197088124 | 1.198582944335231 | 1.307049452526759 | 1.195757893531036 | 1.471134460793645 | 1.397059521324324
MED4_IG_0668r5-6 | Yfr13 | -1.087717894999342 | -1.380449154255596 | -1.279157160110213 | -1.616017653748042 | -1.125886141917369 | 1.226690152177255 | 1.74623237214223 | 1.392933621890987 | 1.408622127370517 | 1.37930952675928
MED4_IG_0676f22-24 | Yfr14 | 1.508991304175646 | 1.052093911246375 | -1.09265505142169 | 1.531041237974339 | -1.009207939535958 | 1.576360845113478 | 2.20203695017559 | 1.625667685669135 | 1.600126726939162 | 2.219597388885447
MED4_IG_0676r9-13 | Yfr6 | 1.028257594150263 | 1.015083747318442 | 1.096432989910167 | -1.165281501835793 | 1.240710976434464 | 1.327415869733761 | 1.435381167275647 | 1.456604839366324 | 1.465522251245307 | 1.404864806179959
MED4_IG_0700f1-4 | Yfr7 | 1.286097447102563 | -1.164143932725481 | -1.095364465333152 | -1.063954453660616 | -1.376741464339072 | 1.36180800163936 | 1.984139711283036 | 1.428660911308241 | 1.26072422372525 | 1.307626171538864
MED4_IG_0702r18-21 | Yfr15 | -1.323961241238934 | 1.150937638055154 | -1.055476799821434 | -1.186721952231677 | -1.042896757040326 | 1.70544288027824 | 2.037048703259579 | 1.2986999110941 | 1.474494968465943 | 1.405881018439765
MED4_IG_0704r24 | Yfr16 | 1.096952558098701 | 1.10433122174907 | -1.003038628826151 | -1.143739654833625 | -1.02997404926448 | 1.090824229888115 | 1.26797399687474 | 1.050242638610461 | 1.132121105274098 | 1.120866922168373
MED4_IG_0714f11-14 | Yfr17 | -1.337401971113423 | 1.114341188246975 | 1.031031039030941 | 1.013502011140478 | 1.002325645818529 | 1.509506252734227 | 1.404438051772779 | 1.232540460140539 | 1.247394404548444 | 1.287615678129494
MED4_IG_1047r16 | Yfr5 | 1.132044775221918 | -1.843766835237638 | -1.279750640255881 | -1.841584726212361 | -1.412901095078239 | 1.14459788903059 | 2.423886653407231 | 1.16857261378115 | 1.280851427679587 | 1.107638736491562
MED4_IG_1142r21-25 | Yfr21 | -1.442979452727126 | 1.104514236651916 | 1.05654684608746 | -1.035840558345563 | -1.020094672927551 | 1.678621233421245 | 2.01324794834227 | 1.287829010594392 | 1.272045189098132 | 1.426338802853366
MED4_IG_1157r8 | Yfr19 | -1.517234898623762 | 1.136153598659771 | -1.395914710628462 | -1.719739317823841 | 1.0504532126063 | 1.244723567727615 | 1.084154314160255 | 1.273607186670858 | 1.66604903332558 | 1.282442113769772
MED4_RNA_0033_at | ffs | 1.108296484825065 | -1.031629797242852 | -1.008084271543368 | -1.089154425303521 | 1.051649802158756 | 1.19273882614689 | 1.755942296854333 | 1.412567623089031 | 1.58132887550267 | 1.709986940571025
MED4_IG_1412f32-33 | Yfr20 | 1.206413866377647 | -1.498512572479799 | -1.231749952933235 | -1.379013873306641 | 1.067441008450177 | 1.26478351391215 | 1.781391231928809 | 1.268336116174638 | 1.217754804303202 | 1.443089583214739
MED4_RNA_0041_x_at | rnpB | 1.023654996603031 | 1.023584500452362 | 1.019921094763191 | 1.025985656078364 | -1.061728394329511 | 1.782106881797986 | 1.790538285835355 | 2.438760360038729 | 1.232888592465662 | 1.466350335532488