Spreadsheet: 05f6f934-c6b3-4791-85ee-1efc49b40505
Sheet: Sheet1

Gene ID | TAIR description | best hit chromosome | start position | stop position | e. value | % identity | score | % score (score best hit/score query x100) | flanking repeats | flankers within ~500bp | note | best hit  alignment | flanking repeat alignment
AT4G30260 | integral membrane [NAME] family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Yip1 domain (InterPro:IPR006977); BEST Arabidopsis thaliana [NAME] is: integral membrane [NAME] family protein (TAIR:AT2G18840.1); Has 733 Blast hits to 718 proteins in 145 species: Archae - 0; Bacteria - 8; Metazoa - 377; [NAME]; Plants - 99; Viruses - 4; Other Eukaryotes - 98 (source: NCBI BLink). | 2 | 8165670 | 8165881 | 0 | 92.9 | 301 | 0.0679918680822227 | 17 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=14818860&x2=8165670&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G30260;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G30260;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G13130 | glycosyl hydrolase family 5 protein / cellulase family protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Ricin B-related lectin (InterPro:[NAME]), Ricin B lectin (InterPro:IPR000772), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 5 (InterPro:IPR001547), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana [NAME] is: glycosyl hydrolase family 5 protein / cellulase family protein (TAIR:AT3G26140.1); Has 228 Blast hits to 221 proteins in 80 species: Archae - 0; Bacteria - 80; [NAME]; [NAME] - 62; Plants - 69; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). | 3 | 9564310 | 9563969 | 0 | 82.5 | 202 | 0.0322271857051691 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=4474718&x2=9564310&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G13130;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G13130;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G13960 | Encodes WRKY DNA-binding protein 4 (WRKY4). | 4 | 7203372 | 7203749 | 0 | 84.9 | 305 | 0.0712283979448856 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=4777193&x2=7203372&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G13960;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G13960;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
[NAME] | Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. | 3 | 6212377 | 6211542 | 0 | 79.9 | 305 | 0.0788521199586349 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=6222194&x2=6212377&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G18080;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G18080;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G30650 | member of WRKY Transcription Factor; Group II-e | 2 | 14702243 | 14702093 | 2e-36 | 88.1 | 157 | 0.0467818831942789 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=10869524&x2=14702243&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G30650;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G30650;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G33680 | RNA binding / nucleic acid binding; FUNCTIONS IN: [NAME] binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology (InterPro:[NAME]), K Homology, type 1, subgroup (InterPro:IPR018111), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana [NAME] is: KH domain-containing protein (TAIR:AT4G10070.1); Has 44280 Blast hits to 25473 proteins in 1107 species: Archae - 50; Bacteria - 4243; Metazoa - 22643; Fungi - 6988; Plants - 3074; Viruses - 316; Other Eukaryotes - 6966 (source: NCBI BLink). | 4 | 6298951 | 6298775 | 2e-25 | 83.6 | 121 | 0.01922465840483 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=12203925&x2=6298951&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G33680;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G33680;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G48030 | Encodes a mitochondrial lipoamide dehydrogenase whose expression is induced by light. | 3 | 5891542 | 5890288 | 0 | 83.5 | 846 | 0.24643169239732 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=17722810&x2=5891542&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G48030;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G48030;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G62300 | transcription factor [NAME] ([NAME]) | 4 | 11692004 | 11691750 | 3e-22 | 80.4 | 109 | 0.0233304794520548 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=23022824&x2=11692004&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G62300;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G62300;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G64000 | member of WRKY Transcription Factor; Group II-c | 5 | 16642726 | 16642898 | 0 | 92.5 | 240 | 0.0712589073634204 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=23750967&x2=16642726&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G64000;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G64000;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G64610 | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT5G42010.1); Has 22665 Blast hits to 14096 proteins in 500 species: Archae - 50; Bacteria - 3402; Metazoa - 10074; [NAME] - 4344; Plants - 1884; Viruses - 0; Other Eukaryotes - 2911 (source: NCBI BLink). | 5 | 16820899 | 16821047 | 3e-23 | 84.6 | 113 | 0.0181642822697316 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=24005546&x2=16820899&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G64610;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G64610;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G80840 | Pathogen-induced transcription factor. [NAME] sequences  in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. | 3 | 13083047 | 13083511 | 0 | 96.3 | 747 | 0.324782608695652 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=30389208&x2=13083047&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G80840;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G80840;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G03340 | Encodes WRKY DNA-binding protein 3 (WRKY3). | 1 | 4778483 | 4778664 | 0 | 89.6 | 200 | 0.0670915800067092 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=1015850&x2=4778483&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G03340;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G03340;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G04880 | [NAME], a member of the WRKY transcription factors in plants involved in disease resistance, abiotic stress, senescence as well as in some developmental processes.  [NAME] is involved in the salicylic acid signaling pathway.  The crystal structure of the WRKY1 C-terminal domain revealed a zinc-binding site and identified the DNA-binding residues of [NAME]. | 5 | 13926732 | 13926859 | 8e-23 | 85.9 | 111 | 0.0217178634318137 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=1717946&x2=13926732&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G04880;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G04880;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G16780 | Encodes a WD-40 repeat protein similar to yeast MSI1. | 4 | 16684172 | 16683889 | 0 | 87.7 | 285 | 0.0688572118869292 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=7290667&x2=16684172&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G16780;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G16780;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G27860 | Encodes UDP-d-apiose/UDP-d-xylose synthase that requires NAD+ for enzymatic activity and is strongly inhibited by UDP-d-galacturonate. | 1 | 2576605 | 2576328 | 0 | 87.1 | 266 | 0.0591111111111111 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=11873984&x2=2576605&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G27860;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G27860;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G37670 | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: sperm cell, [NAME], flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:[NAME]); Has 28731 Blast hits to 17401 proteins in 540 species: Archae - 42; Bacteria - 3833; Metazoa - 12960; [NAME]; Plants - 2561; Viruses - 3; Other Eukaryotes - 3803 (source: NCBI BLink). | 5 | 527352 | 527527 | 2e-27 | 84.1 | 127 | 0.0240575866641409 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=15807145&x2=527352&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G37670;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G37670;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G40580 | protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), [NAME]/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), [NAME]/threonine protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana [NAME] is: protein kinase family protein (TAIR:AT2G40560.1); Has 50592 Blast hits to 50028 proteins in 1960 species: Archae - 36; Bacteria - 3450; Metazoa - 23685; [NAME] - 5940; Plants - 6196; Viruses - 264; Other Eukaryotes - 11021 (source: NCBI BLink). | 3 | 1282218 | 1282032 | 2e-27 | 83.4 | 125 | 0.0563063063063063 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=16950962&x2=1282218&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G40580;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G40580;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G44800 | oxidoreductase, 2OG-Fe(II) oxygenase family protein; FUNCTIONS IN: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: 2OG-Fe(II) oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana [NAME] is: oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors (TAIR:AT3G60290.1); Has 5814 Blast hits to 5787 proteins in 659 species: Archae - 0; Bacteria - 678; Metazoa - 98; [NAME] - 639; Plants - 3076; Viruses - 0; Other Eukaryotes - 1323 (source: NCBI BLink). | 3 | 22294812 | 22295257 | 0 | 87.2 | 432 | 0.127358490566038 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=18473895&x2=22294812&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G44800;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G44800;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G45540 | WD-40 repeat family protein / beige-related; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: beige/BEACH domain-containing protein (TAIR:AT3G60920.1); Has 11372 Blast hits to 6946 proteins in 396 species: Archae - 6; Bacteria - 2960; [NAME]; Fungi - 1905; Plants - 570; Viruses - 0; Other Eukaryotes - 1817 (source: NCBI BLink). | 3 | 22524397 | 22523113 | 0 | 84.1 | 922 | 0.0542034097589653 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=18773275&x2=22524397&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G45540;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G45540;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G47110 | polyubiquitin gene | 3 | 23048112 | 23048343 | 0 | 88.8 | 262 | 0.413249211356467 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=19352069&x2=23048112&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G47110;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G47110;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G13340 | WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, [NAME] complex; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT1G55680.1); Has 15602 Blast hits to 7419 proteins in 385 species: Archae - 68; Bacteria - 4635; Metazoa - 4492; [NAME] - 2962; Plants - 964; Viruses - 0; Other Eukaryotes - 2481 (source: NCBI BLink). | 1 | 20809076 | 20808715 | 0 | 85.4 | 297 | 0.0496572479518475 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=4331789&x2=20809076&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G13340;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G13340;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G16830 | TOPLESS-RELATED 2 (TPR2); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana [NAME] is: TPR3 (TOPLESS-RELATED 3) (TAIR:AT5G27030.1); Has 10164 Blast hits to 6720 proteins in 387 species: Archae - 16; Bacteria - 2370; Metazoa - 3628; Fungi - 1973; Plants - 737; Viruses - 0; Other Eukaryotes - 1440 (source: NCBI BLink). | 5 | 9515103 | 9514918 | 1e-23 | 82.8 | 115 | 0.00955943474646717 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=5731540&x2=9515103&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G16830;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G16830;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G48980 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lipopolysaccharide-modifying protein (InterPro:IPR006598), Protein of unknown function DUF821, CAP10-like (InterPro:IPR008539); BEST Arabidopsis thaliana [NAME] is: unknown protein (TAIR:AT5G23850.1); Has 462 Blast hits to 458 proteins in 90 species: Archae - 0; Bacteria - 36; Metazoa - 203; Fungi - 74; Plants - 116; Viruses - 2; Other Eukaryotes - 31 (source: NCBI BLink). | 5 | 8039110 | 8039380 | 0 | 84.9 | 212 | 0.0391866913123845 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=18166581&x2=8039110&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G48980;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G48980;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G58850 | Encodes PHYTOCHROME RAPIDLY REGULATED2 (PAR2), an atypical basic helix-loop-helix ([NAME]) protein.  Closely related to [NAME] (At2g42870).  Up regulated after simulated shade perception.  Acts in the nucleus to control plant development and as a negative regulator of shade avoidance response.  Functions as transcriptional repressor of auxin-responsive genes SAUR15 (AT4G38850) and SAUR68 (AT1G29510). | 2 | 17844054 | 17843947 | 2e-23 | 88 | 111 | 0.113846153846154 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=21770919&x2=17844054&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G58850;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G58850;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G63460 | WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G18830.1); Has 29990 Blast hits to 20402 proteins in 935 species: Archae - 42; Bacteria - 3651; Metazoa - 11973; Fungi - 5426; Plants - 3318; Viruses - 524; Other Eukaryotes - 5056 (source: NCBI BLink). | 1 | 6492746 | 6492966 | 1.96e-44 | 85.5 | 184 | 0.0171003717472119 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=23447192&x2=6492746&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G63460;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G63460;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G02660 | WD-40 repeat family protein / beige-related; FUNCTIONS IN: binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein / beige-related (TAIR:[NAME]); Has 5849 Blast hits to 4353 proteins in 269 species: Archae - 8; Bacteria - 956; Metazoa - 2990; [NAME]; Plants - 315; Viruses - 0; Other Eukaryotes - 903 (source: NCBI BLink). | 1 | 718100 | 715657 | 0 | 83.7 | 1681 | 0.0586941340782123 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=1174321&x2=718100&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G02660;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G02660;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G08480 | Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, [NAME]), At4g08480 (MEKK2, also known as MAP3Kb4, [NAME]),  At4g08470 (MEKK3, also known as [NAME], MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  [NAME] for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301. | 5 | 22428873 | 22428852 | 0.024 | 100 | 44 | 0.00578795053933175 |  |  | repeat sequence, and partly flanking | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=5391504&x2=22428873&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G08480;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G08480;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G12020 | Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, [NAME]), At4g08480 (MEKK2, also known as MAP3Kb4, [NAME]),  At4g08470 (MEKK3, also known as [NAME], MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  [NAME] for mitogen-activated protein kinases are described in Trends in Plant Science 2002,7(7):301. | 1 | 23808928 | 23808596 | 0 | 87.7 | 335 | 0.0244169096209913 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=7201650&x2=23808928&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G12020;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G12020;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
[NAME] | UBIQUITIN-SPECIFIC PROTEASE 18 (UBP18); FUNCTIONS IN: cysteine-type endopeptidase activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, MYND-type (InterPro:IPR002893), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana [NAME] is: UBP19 (UBIQUITIN-SPECIFIC PROTEASE 19); cysteine-type endopeptidase/ ubiquitin thiolesterase (TAIR:AT2G24640.1); Has 7197 Blast hits to 6335 proteins in 233 species: Archae - 2; Bacteria - 369; Metazoa - 3811; [NAME]; Plants - 557; Viruses - 7; Other Eukaryotes - 1456 (source: NCBI BLink). | 2 | 10484262 | 10484063 | 2e-42 | 86.5 | 176 | 0.0274871154146494 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=15339597&x2=10484262&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G31670;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G31670;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G35010 | putative beta-galactosidase (BGAL11 gene) | 2 | 7269795 | 7269288 | 0 | 83.1 | 325 | 0.0408856459932067 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=16672097&x2=7269795&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G35010;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G35010;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G26900 | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT5G27080.1); Has 27404 Blast hits to 15145 proteins in 490 species: Archae - 40; Bacteria - 4409; Metazoa - 11993; [NAME] - 5129; Plants - 2410; Viruses - 0; Other Eukaryotes - 3423 (source: NCBI BLink). | 4 | 16042054 | 16041478 | 0 | 88.4 | 613 | 0.23531669865643 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=9463755&x2=16042054&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G26900;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G26900;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G27030 | TOPLESS-RELATED 3 (TPR3); INVOLVED IN: primary shoot apical meristem specification; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal to LisH motif (InterPro:IPR006595), LisH dimerisation motif (InterPro:IPR006594); BEST Arabidopsis thaliana [NAME] is: [NAME] (TOPLESS-RELATED 2) (TAIR:AT3G16830.1); Has 10032 Blast hits to 6372 proteins in 376 species: Archae - 24; Bacteria - 2655; Metazoa - 3380; Fungi - 1755; Plants - 716; Viruses - 0; Other Eukaryotes - 1502 (source: NCBI BLink). | 1 | 30271119 | 30271016 | 9e-25 | 89.4 | 119 | 0.0121317157712305 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=9513902&x2=30271119&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G27030;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G27030;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G40880 | WD-40 repeat family protein / zfwd3 protein (ZFWD3); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: [NAME], pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein / zfwd4 protein (ZFWD4) (TAIR:AT5G49200.1); Has 19354 Blast hits to 11181 proteins in 423 species: Archae - 14; Bacteria - 2857; Metazoa - 8028; [NAME]; Plants - 1585; Viruses - 0; Other Eukaryotes - 2769 (source: NCBI BLink). | 2 | 6646633 | 6646475 | 9.95e-44 | 89.3 | 180 | 0.037197768133912 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=16396123&x2=6646633&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G40880;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G40880;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G49200 | WD-40 repeat family protein / zfwd4 protein (ZFWD4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein / zfwd3 protein (ZFWD3) (TAIR:AT5G40880.1); Has 25041 Blast hits to 14412 proteins in 471 species: Archae - 20; Bacteria - 3252; Metazoa - 10699; [NAME] - 5302; Plants - 2300; Viruses - 0; Other Eukaryotes - 3468 (source: NCBI BLink). | 2 | 6646945 | 6646642 | 0 | 89.3 | 353 | 0.141313050440352 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=19966281&x2=6646945&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G49200;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G49200;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G50550 | WD-40 repeat family protein / St12p protein, putative; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40 repeat (InterPro:IPR001680), WD40/[NAME] repeat-like (InterPro:IPR015943); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein / St12p protein, putative (TAIR:AT5G50650.1); Has 6284 Blast hits to 3681 proteins in 273 species: Archae - 34; Bacteria - 2386; Metazoa - 1266; Fungi - 1210; Plants - 323; Viruses - 0; Other Eukaryotes - 1065 (source: NCBI BLink). | 2 | 212970 | 212625 | 0 | 85.4 | 252 | 0.0647315694836887 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=20594096&x2=212970&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G50550;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G50550;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G54520 | WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, [NAME] complex; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: transducin family protein / WD-40 repeat family protein (TAIR:AT1G10580.1); Has 17905 Blast hits to 12742 proteins in 467 species: Archae - 38; Bacteria - 2465; [NAME]; Fungi - 2995; Plants - 1496; Viruses - 0; Other Eukaryotes - 2468 (source: NCBI BLink). | 2 | 10958010 | 10958199 | 0 | 90.1 | 226 | 0.0440889582520484 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=22166346&x2=10958010&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G54520;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G54520;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G55480 | Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 1 | 24997296 | 24996792 | 0 | 80.4 | 202 | 0.0269584945949553 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=22491456&x2=24997296&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G55480;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G55480;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G55970 | zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, [NAME] four leaves visible, 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:[NAME]); BEST Arabidopsis thaliana [NAME] is: protein binding / zinc ion binding (TAIR:[NAME]); Has 6432 Blast hits to 6415 proteins in 202 species: Archae - 0; Bacteria - 0; [NAME]; [NAME]; Plants - 2666; Viruses - 18; Other Eukaryotes - 1086 (source: NCBI BLink). | 4 | 13412295 | 13411992 | 0 | 82.9 | 190 | 0.0508157261299813 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=22684647&x2=13412295&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G55970;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G55970;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G04370 | encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5. | 5 | 17452606 | 17452401 | 2e-34 | 84 | 147 | 0.18444165621079 | 16 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=1175176&x2=17452606&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G04370;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G04370;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G23205 | invertase/pectin methylesterase inhibitor family protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana [NAME] is: invertase/pectin methylesterase inhibitor family protein (TAIR:AT1G70720.1); Has 417 Blast hits to 412 proteins in 34 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 0; Plants - 417; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 2 | 274320 | 274241 | 2e-11 | 86.2 | 72 | 0.0415944540727903 | 81 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=8234882&x2=274320&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G23205;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G23205;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G48500 | JASMONATE-ZIM-DOMAIN PROTEIN 4 (JAZ4); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Tify (InterPro:IPR010399), CCT domain-like (InterPro:IPR018467); BEST Arabidopsis thaliana [NAME] is: [NAME] (JASMONATE-ZIM-DOMAIN PROTEIN 3) (TAIR:AT3G17860.1); Has 162 Blast hits to 162 proteins in 19 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 0; Plants - 161; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | 3 | 6122475 | 6122522 | 9e-11 | 93.8 | 72 | 0.0136441159749858 | 42 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=17935525&x2=6122475&chr2=3&x1&num_seqs=2# | [NAME]
[NAME] | WD-40 repeat family protein; FUNCTIONS IN: protein phosphatase type 2A regulator activity, signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: protein phosphatase type 2A complex, [NAME] complex; EXPRESSED IN: sperm cell; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2A, regulatory subunit PR55 (InterPro:IPR000009), WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT1G64610.2); Has 25332 Blast hits to 16442 proteins in 516 species: Archae - 36; Bacteria - 3914; Metazoa - 11168; Fungi - 4844; Plants - 2054; Viruses - 0; Other Eukaryotes - 3316 (source: NCBI BLink). | 2 | 13553126 | 13553103 | 0.0009 | 100 | 48 | 0.0134153158188932 | 215 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=18078013&x2=13553126&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G48870;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G48870;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G49910 | Encodes a homolog of the yeast and human [NAME] (BUDDING UNINHIBITED BY [NAME]) protein.  Yeast and human BUB3s function in spindle assembly checkpoint control. | 3 | 6806713 | 6806999 | 0 | 87.5 | 283 | 0.0602383993188591 | 66 | no | seq part of dups flanking (zinc finger) | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=18482693&x2=6806713&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G49910;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G49910;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G53820 | zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:[NAME]); BEST Arabidopsis thaliana [NAME] is: ATL3; protein binding / zinc ion binding (TAIR:AT1G72310.1); Has 6277 Blast hits to 6262 proteins in 229 species: Archae - 0; Bacteria - 0; Metazoa - 2105; [NAME]; Plants - 2605; Viruses - 71; Other Eukaryotes - 1010 (source: NCBI BLink). | 3 | 5693309 | 5693361 | 3e-14 | 94.3 | 82 | 0.0443243243243243 | 15 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=20095159&x2=5693309&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G53820;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G53820;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G55600 | member of WRKY Transcription Factor; [NAME] It has WRKY domain at its N terminal end and zinc-finger like motif. | 5 | 22799655 | 22799716 | 4e-12 | 90.3 | 76 | 0.0207480207480207 | 21 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=20779960&x2=22799655&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G55600;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G55600;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G55680 | WD-40 repeat protein family, contains 2 (1 significant) WD-40 repeats (PF0400); similar to Trp-Asp repeat protein (PIR:T40094) (Schizosaccharomyces) | 3 | 4334188 | 4334549 | 0 | 85.4 | 297 | 0.0594713656387665 | 15 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=20810860&x2=4334188&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G55680;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G55680;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G67640 | lysine and histidine specific transporter, putative; FUNCTIONS IN: amino acid transmembrane transporter activity, amine transmembrane transporter activity; INVOLVED IN: amino acid transport; LOCATED IN: membrane; EXPRESSED IN: embryo, [NAME], pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, C globular stage; CONTAINS InterPro DOMAIN/s: Amino acid transporter, [NAME] (InterPro:IPR013057); BEST Arabidopsis thaliana [NAME] is: LHT2 (LYSINE HISTIDINE TRANSPORTER 2); acidic amino acid transmembrane transporter/ amino acid transmembrane transporter/ neutral amino acid transmembrane transporter (TAIR:AT1G24400.1); Has 2846 Blast hits to 2839 proteins in 231 species: Archae - 7; Bacteria - 94; Metazoa - 1017; [NAME] - 498; Plants - 872; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink). | 5 | 16342401 | 16342477 | 9e-19 | 90.9 | 98 | 0.0284305192921381 | 854 +/- | no | in Al, outside of the insertion region; repeat seq; only 280 bp of original; match to AT1G67635.1 (phosphotidylinositol, 100%); unique sequence, not repeats | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=25357571&x2=16342401&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G67640;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G67640;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G68150 | member of WRKY Transcription Factor; Group II-b | 4 | 747041 | 747126 | 5e-17 | 88.4 | 92 | 0.0277275467148885 | 24 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=25547632&x2=747041&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G68150;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G68150;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G21900 | member of WRKY Transcription Factor; Group II-c | 4 | 10736996 | 10736967 | 5e-05 | 96.7 | 52 | 0.0207171314741036 | 21 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=9343302&x2=10736996&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G21900;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G21900;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G41500 | Encodes LACHESIS (LIS), a protein with seven WD40 repeats. LIS is homologous to the yeast splicing factor PRP4 which is associated with the U4/U6 complex of the spliceosome.  LIS is involved in a mechanism that prevents accessory cells from adopting gametic cell fate: lis mutant forms supernumerary egg cells. | 5 | 20598662 | 20598784 | 4e-13 | 83.9 | 80 | 0.0126782884310618 | 16 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=17314504&x2=20598662&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G41500;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G41500;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G08470 | Encodes a member of the A1 subgroup of the MEKK (MAPK/ERK kinase kinase) family. MEKK is another name for Mitogen-Activated Protein Kinase Kinase Kinase (MAPKKK or MAP3K).  This subgroup has four members: At4g08500 (MEKK1, also known as ARAKIN, MAP3Kb1, [NAME]), At4g08480 (MEKK2, also known as MAP3Kb4, [NAME]),  At4g08470 (MEKK3, also known as [NAME], MAPKKK10) and At4g12020 (MEKK4, also known as MAP3Kb5, MAPKKK11, WRKY19).  [NAME] for mitogen-activated protein kinases are described in Trends in Plant Science 2002, 7(7):301. | 1 | 16596766 | 16596830 | 0.0003 | 84.6 | 50 | 0.00806061583104949 | 150 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=5387055&x2=16596766&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G08470;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G08470;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G12440 | APT4; FUNCTIONS IN: adenine phosphoribosyltransferase activity; INVOLVED IN: nucleoside metabolic process, adenine salvage; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Adenine phosphoribosyl transferase (InterPro:IPR005764), Phosphoribosyltransferase (InterPro:IPR000836); BEST Arabidopsis thaliana [NAME] is: [NAME] (ADENINE PHOSPHORIBOSYL TRANSFERASE 3); adenine phosphoribosyltransferase (TAIR:AT4G22570.1); Has 5911 Blast hits to 5911 proteins in 1409 species: Archae - 173; Bacteria - 3251; Metazoa - 144; [NAME]; Plants - 101; Viruses - 0; Other Eukaryotes - 2115 (source: NCBI BLink). | 1 | 6379273 | 6379376 | 3e-14 | 86.8 | 84 | 0.0256332010985658 | 32 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=7377551&x2=6379273&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G12440;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G12440;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G23800 | high mobility group (HMG1/2) family protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, [NAME]/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana [NAME] is: high mobility group (HMG1/2) family protein (TAIR:AT4G11080.1); Has 62445 Blast hits to 32833 proteins in 1549 species: Archae - 256; Bacteria - 4440; [NAME]; Fungi - 3596; Plants - 1795; Viruses - 218; Other Eukaryotes - 18887 (source: NCBI BLink). | 3 | 9604935 | 9604992 | 3e-07 | 87.9 | 60 | 0.0180288461538462 | 18 | no | spans 2 genes | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=12390177&x2=9604935&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G23800;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G23800;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G23660 | homolog of the Medicago nodulin MTN3 | 3 | 18065326 | 18065146 | 0 | 88.9 | 200 | 0.0478812544888676 | 18 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=7973928&x2=18065326&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G23660;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G23660;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G42010 | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction, response to salt stress; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT1G64610.2); Has 22412 Blast hits to 14316 proteins in 476 species: Archae - 38; Bacteria - 3258; [NAME]; [NAME] - 4318; Plants - 1922; Viruses - 0; Other Eukaryotes - 2972 (source: NCBI BLink). | 1 | 24003689 | 24003541 | 2e-23 | 84.6 | 113 | 0.0211531261699738 | 15 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=16819508&x2=24003689&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G42010;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G42010;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G50970 | transducin / WD-40 repeat protein family, contains 3 WD-40 repeats (PF00400); similar to WD-40 repeat protein [NAME] (SP:O22468) (Arabidopsis thaliana) | 3 | 7588508 | 7588485 | 0.001 | 100 | 48 | 0.00909607731665719 | 22 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=20753839&x2=7588508&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G50970;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G50970;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G53500 | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT5G24320.1); Has 22976 Blast hits to 14988 proteins in 520 species: Archae - 48; Bacteria - 3424; Metazoa - 10283; [NAME] - 4273; Plants - 1888; Viruses - 0; Other Eukaryotes - 3060 (source: NCBI BLink). | 4 | 13172577 | 13172597 | 0.096 | 100 | 42 | 0.0116150442477876 | 22 | no |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=21744490&x2=13172577&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G53500;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G53500;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G11160 | nucleotide binding; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein / katanin p80 subunit, putative (TAIR:[NAME]); Has 86310 Blast hits to 31762 proteins in 780 species: Archae - 60; Bacteria - 8010; [NAME]; [NAME] - 16769; Plants - 8346; Viruses - 5; Other Eukaryotes - 12146 (source: NCBI BLink). | 5 | 2702932 | 2702986 | 3e-12 | 92.7 | 78 | 0.00688437775816417 | 23 | yes |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=3733925&x2=2702932&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G11160;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G11160;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G36070 | WD-40 repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex, [NAME] complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: unknown protein (TAIR:AT1G78070.1); Has 17887 Blast hits to 8999 proteins in 417 species: Archae - 52; Bacteria - 4808; Metazoa - 5895; [NAME]; Plants - 1207; Viruses - 0; Other Eukaryotes - 2601 (source: NCBI BLink). | 2 | 17032368 | 17032448 | 4e-13 | 87.9 | 80 | 0.0108799129606963 | 15 | yes |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=13471888&x2=17032368&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G36070;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G36070;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G60890 | phosphatidylinositol-4-phosphate 5-kinase family protein; FUNCTIONS IN: 1-phosphatidylinositol-4-phosphate 5-kinase activity, phosphatidylinositol phosphate kinase activity, ATP binding; INVOLVED IN: phosphatidylinositol metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Phosphatidylinositol-4-phosphate 5-kinase, core, subgroup (InterPro:IPR016034), Phosphatidylinositol-4-phosphate 5-kinase, plant (InterPro:IPR017163), MORN motif (InterPro:IPR003409), Phosphatidylinositol-4-phosphate 5-kinase, core (InterPro:IPR002498); BEST Arabidopsis thaliana [NAME] is: phosphatidylinositol-4-phosphate 5-kinase family protein (TAIR:AT1G10900.1); Has 22998 Blast hits to 6300 proteins in 384 species: Archae - 0; Bacteria - 2356; [NAME]; [NAME]; Plants - 691; Viruses - 0; Other Eukaryotes - 15702 (source: NCBI BLink). | 3 | 3040941 | 3040868 | 0.0001 | 83.8 | 52 | 0.00534155110426297 | 30 | yes | flankers | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=22420881&x2=3040941&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G60890;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G60890;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G15470 | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: heterotrimeric G-protein complex; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT5G54200.1); Has 26859 Blast hits to 16455 proteins in 561 species: Archae - 48; Bacteria - 3965; Metazoa - 11807; [NAME] - 5031; Plants - 2311; Viruses - 6; Other Eukaryotes - 3691 (source: NCBI BLink). | 5 | 22013450 | 22013149 | 2e-36 | 81.6 | 157 | 0.0207096689091149 | 17 | yes |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=5220182&x2=22013450&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G15470;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G15470;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G12520 | protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein and hydrophobic protein, helical (InterPro:IPR013770); BEST Arabidopsis thaliana [NAME] is: protease inhibitor/seed storage/lipid transfer protein (LTP) family protein (TAIR:[NAME]); Has 534 Blast hits to 530 proteins in 51 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 0; Plants - 534; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 1 | 4090425 | 4090379 | 4e-06 | 89.4 | 54 | 0.0578158458244111 | 668 | yes | dups; could be a dup insertion | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=7421735&x2=4090425&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G12520;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G12520;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G08260 | serine carboxypeptidase-like 35 (scpl35); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: [NAME], serine carboxypeptidase (InterPro:IPR001563), [NAME], serine carboxypeptidase, active site (InterPro:IPR018202); BEST Arabidopsis thaliana [NAME] is: SCPL34; serine-type carboxypeptidase (TAIR:AT5G23210.1); Has 2548 Blast hits to 2503 proteins in 271 species: Archae - 0; Bacteria - 119; Metazoa - 569; [NAME] - 567; Plants - 966; Viruses - 0; Other Eukaryotes - 327 (source: NCBI BLink). | 4 | 14944462 | 14944487 | 0.0001 | 100 | 52 | 0.00635463766344861 | 21 | yes |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=2657152&x2=14944462&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G08260;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G08260;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G27570 | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: CUL4 RING ubiquitin ligase complex, [NAME] complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT5G27080.1); Has 29981 Blast hits to 16478 proteins in 518 species: Archae - 52; Bacteria - 4610; Metazoa - 13208; [NAME]; Plants - 2670; Viruses - 0; Other Eukaryotes - 3747 (source: NCBI BLink). | 4 | 16042040 | 16041478 | 0 | 89.4 | 617 | 0.260667511618082 | 18 | yes |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=9736134&x2=16042040&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G27570;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G27570;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G43700 | Auxin inducible protein similar to transcription factors. | 1 | 1129053 | 1128737 | 0 | 85.5 | 252 | 0.111504424778761 | 15 | yes |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=17567669&x2=1129053&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G43700;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G43700;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G03060 | Encodes a WD/BEACH domain protein involved in cell morphogenesis. | 4 | 1164852 | 1162403 | 0 | 83.7 | 1681 | 0.0768984446477585 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=726664&x2=1164852&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G03060;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G03060;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G04360 | zinc finger (C3HC4-type RING finger) family protein; FUNCTIONS IN: protein binding, zinc ion binding; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, RING/FYVE/PHD-type (InterPro:[NAME]); BEST Arabidopsis thaliana [NAME] is: zinc finger (C3HC4-type RING finger) family protein (TAIR:AT5G43420.1); Has 6245 Blast hits to 6224 proteins in 232 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 432; Plants - 2648; Viruses - 79; Other Eukaryotes - 1093 (source: NCBI BLink). | 5 | 17469420 | 17469571 | 2e-13 | 81.6 | 80 | 0.0308522946394138 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=1168811&x2=17469420&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G04360;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G04360;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G18860 | member of WRKY Transcription Factor; Group II-b | 4 | 747044 | 747123 | 8e-16 | 88.8 | 88 | 0.026578073089701 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=6509483&x2=747044&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G18860;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G18860;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G20370 | tRNA pseudouridine synthase family protein; FUNCTIONS IN: pseudouridine synthase activity; INVOLVED IN: tRNA processing, pseudouridine synthesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: tRNA pseudouridine synthase (InterPro:IPR001406); BEST Arabidopsis thaliana [NAME] is: tRNA pseudouridine synthase family protein (TAIR:AT1G76120.1); Has 2413 Blast hits to 2196 proteins in 790 species: Archae - 88; Bacteria - 1223; [NAME]; [NAME] - 214; Plants - 87; Viruses - 0; Other Eukaryotes - 520 (source: NCBI BLink). | 2 | 10481001 | 10480982 | 0.2 | 100 | 40 | 0.00977039570102589 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=7053631&x2=10481001&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G20370;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G20370;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G23530 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; BEST Arabidopsis thaliana [NAME] is: unknown protein (TAIR:AT1G70470.1); Has 25 Blast hits to 25 proteins in 7 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 0; Plants - 24; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | 3 | 4727170 | 4727203 | 0.007 | 91.2 | 44 | 0.0214634146341463 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=8345584&x2=4727170&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G23530;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G23530;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G23540 | protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: [NAME], flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), [NAME]/threonine protein kinase (InterPro:IPR002290), Tyrosine protein kinase (InterPro:IPR001245), [NAME]/threonine protein kinase-related (InterPro:IPR017442), Protein kinase-like (InterPro:IPR011009), [NAME]/threonine protein kinase, active site (InterPro:IPR008271), Protein kinase, core (InterPro:IPR000719); BEST Arabidopsis thaliana [NAME] is: protein kinase, putative (TAIR:AT1G70460.1); Has 307341 Blast hits to 169109 proteins in 4549 species: Archae - 575; Bacteria - 44733; Metazoa - 131565; [NAME]; Plants - 37348; Viruses - 6478; Other Eukaryotes - 45330 (source: NCBI BLink). | 4 | 16467192 | 16467287 | 5e-06 | 82.3 | 56 | 0.00962199312714777 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=8349775&x2=16467192&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G23540;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G23540;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G23550 | Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation. | 5 | 19450445 | 19450549 | 4e-15 | 86.8 | 86 | 0.0248914616497829 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=8350891&x2=19450445&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G23550;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G23550;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G26920 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana [NAME] is: unknown protein (TAIR:AT1G69760.1); Has 28 Blast hits to 28 proteins in 9 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 6; Plants - 16; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | 2 | 11402015 | 11402034 | 0.085 | 100 | 40 | 0.0318217979315831 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=9329499&x2=11402015&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G26920;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G26920;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G29280 | member of WRKY Transcription Factor; Group II-e | 3 | 21727201 | 21727257 | 2e-09 | 89.5 | 66 | 0.0377574370709382 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=10236572&x2=21727201&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G29280;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G29280;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G29860 | member of WRKY Transcription Factor; Group II-c | 4 | 10062319 | 10062434 | 2e-18 | 85.3 | 96 | 0.0648210668467252 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=10455023&x2=10062319&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G29860;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G29860;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G48040 | catalytic/ protein serine/threonine phosphatase; FUNCTIONS IN: protein serine/threonine phosphatase activity, catalytic activity; INVOLVED IN: protein amino acid dephosphorylation; LOCATED IN: protein serine/threonine phosphatase complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C,  manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C, N-terminal (InterPro:IPR014045), Protein phosphatase 2C (InterPro:IPR015655); BEST Arabidopsis thaliana [NAME] is: protein phosphatase 2C-related / PP2C-related (TAIR:[NAME]); Has 4299 Blast hits to 4267 proteins in 263 species: Archae - 3; Bacteria - 65; Metazoa - 1416; [NAME]; Plants - 1326; Viruses - 9; Other Eukaryotes - 977 (source: NCBI BLink). | 3 | 5893510 | 5893293 | 2e-14 | 79.8 | 84 | 0.0208747514910537 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=17725510&x2=5893510&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G48040;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G48040;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G54730 | sugar transporter, putative; FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, [NAME]; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana [NAME] is: sugar transporter, putative (TAIR:AT2G48020.2); Has 15363 Blast hits to 15253 proteins in 1025 species: Archae - 217; Bacteria - 5241; [NAME]; [NAME] - 4006; Plants - 1215; Viruses - 0; Other Eukaryotes - 784 (source: NCBI BLink). | 3 | 1459005 | 1458974 | 0.002 | 93.8 | 48 | 0.0106951871657754 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=20428503&x2=1459005&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G54730;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G54730;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G55650 | high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein; FUNCTIONS IN: transcription factor activity; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, [NAME]/HMG2 (InterPro:IPR000910), AT-rich interaction region (InterPro:IPR001606); BEST Arabidopsis thaliana [NAME] is: high mobility group (HMG1/2) family protein / ARID/BRIGHT DNA-binding domain-containing protein (TAIR:AT3G13350.1); Has 1266 Blast hits to 1257 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 975; [NAME] - 96; Plants - 83; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink). | 3 | 4337155 | 4337082 | 4e-12 | 87.8 | 76 | 0.0187932739861523 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=20800006&x2=4337155&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G55650;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G55650;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G58230 | WD-40 repeat family protein / beige-related; INVOLVED IN: signal transduction; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), Beige/BEACH (InterPro:IPR000409), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein / beige-related (TAIR:AT2G45540.1); Has 9475 Blast hits to 6493 proteins in 351 species: Archae - 20; Bacteria - 1966; [NAME]; Fungi - 1532; Plants - 709; Viruses - 0; Other Eukaryotes - 1626 (source: NCBI BLink). | 5 | 6535251 | 6535271 | 0.13 | 100 | 42 | 0.00413385826771654 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=21577371&x2=6535251&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G58230;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G58230;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G58330 | ZW2; BEST Arabidopsis thaliana [NAME] is: transcription factor-related (TAIR:AT1G09950.1); Has 353 Blast hits to 352 proteins in 27 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 0; Plants - 353; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 4 | 12168406 | 12168387 | 0.088 | 100 | 40 | 0.0232693426410704 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=21644795&x2=12168406&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G58330;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G58330;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G61210 | expressed protein | 5 | 24038916 | 24038670 | 0 | 96.8 | 426 | 0.0294605809128631 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=22568177&x2=24038916&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G61210;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G61210;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G69310 | member of WRKY Transcription Factor; Group II-c | 2 | 19412922 | 19412838 | 1e-13 | 87.1 | 82 | 0.0366398570151921 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=26060503&x2=19412922&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G69310;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G69310;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G69810 | member of WRKY Transcription Factor; Group II-b | 4 | 747611 | 747642 | 3e-06 | 96.9 | 56 | 0.0188806473364801 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=26282781&x2=747611&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G69810;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G69810;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G69990 | leucine-rich repeat transmembrane protein kinase, putative; FUNCTIONS IN: protein serine/threonine kinase activity, kinase activity, ATP binding; INVOLVED IN: transmembrane receptor [NAME] signaling pathway, protein amino acid phosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, core (InterPro:IPR000719), [NAME]/threonine protein kinase (InterPro:IPR002290), Leucine-rich repeat (InterPro:IPR001611), Leucine-rich repeat, N-terminal (InterPro:IPR013210), Tyrosine protein kinase (InterPro:IPR001245), Protein kinase-like (InterPro:IPR011009); BEST Arabidopsis thaliana [NAME] is: leucine-rich repeat transmembrane protein kinase, putative (TAIR:AT1G27190.1); Has 70777 Blast hits to 44170 proteins in 1431 species: Archae - 40; Bacteria - 3927; Metazoa - 16996; [NAME] - 1620; Plants - 41536; Viruses - 145; Other Eukaryotes - 6513 (source: NCBI BLink). | 3 | 17076529 | 17076484 | 8e-10 | 93.5 | 68 | 0.0193126952570293 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=26365673&x2=17076529&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G69990;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G69990;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G70100 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana [NAME] is: unknown protein (TAIR:AT1G24160.1); Has 2760 Blast hits to 2129 proteins in 250 species: Archae - 9; Bacteria - 384; Metazoa - 1180; [NAME] - 217; Plants - 141; Viruses - 41; Other Eukaryotes - 788 (source: NCBI BLink). | 2 | 4814097 | 4814117 | 0.075 | 100 | 42 | 0.00729546638874414 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=26406783&x2=4814097&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G70100;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G70100;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G72870 | disease resistance protein (TIR-NBS class), putative; FUNCTIONS IN: transmembrane receptor activity, ATP binding; INVOLVED IN: signal transduction, defense response, apoptosis, innate immune response; LOCATED IN: intrinsic to membrane; EXPRESSED IN: stem, sperm cell, root; CONTAINS InterPro DOMAIN/s: NB-ARC (InterPro:IPR002182), Toll-Interleukin receptor (InterPro:IPR000157); BEST Arabidopsis thaliana [NAME] is: disease resistance protein (TIR-NBS class), putative (TAIR:AT1G72850.1); Has 5583 Blast hits to 5277 proteins in 187 species: Archae - 0; Bacteria - 10; [NAME]; [NAME] - 0; Plants - 5572; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). | 4 | 2793639 | 2793680 | 2e-07 | 95.2 | 60 | 0.0222222222222222 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=27425415&x2=2793639&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G72870;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G72870;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT1G78070 | similar to WD-40 repeat family protein [Arabidopsis thaliana] (TAIR:AT1G36070.1); similar to unnamed protein product [Vitis vinifera] (GB:CAO61740.1); contains InterPro domain WD40 repeat-like (InterPro:IPR011046); contains InterPro domain WD40/[NAME] repeat-like (InterPro:IPR015943); contains InterPro domain WD40 repeat (InterPro:IPR001680) | 3 | 4333130 | 4333173 | 0.002 | 88.6 | 48 | 0.011828486939379 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=1&x1=29361789&x2=4333130&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT1G78070;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT1G78070;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT2G22950 | calcium-transporting ATPase, plasma membrane-type, putative / Ca2+-ATPase, putative ([NAME]); FUNCTIONS IN: calmodulin binding, calcium-transporting ATPase activity; INVOLVED IN: calcium ion transport, cation transport, metabolic process, ATP biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: leaf whorl, petal, [NAME], flower, pollen tube; EXPRESSED DURING: L mature pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, P-type, ATPase-associated region (InterPro:IPR008250), ATPase, P-type, calcium-transporting, PMCA-type (InterPro:IPR006408), ATPase, P-type, H+ transporting proton pump (InterPro:IPR000695), Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), ATPase, P-type cation-transporter, N-terminal (InterPro:IPR004014), ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter (InterPro:IPR001757), ATPase, P-type phosphorylation site (InterPro:IPR018303), ATPase, P-type cation-transporter, C-terminal (InterPro:IPR006068); BEST Arabidopsis thaliana [NAME] is: ACA2 (CALCIUM ATPASE 2); calcium ion transmembrane transporter/ calcium-transporting [NAME] calmodulin binding (TAIR:AT4G37640.1); Has 26039 Blast hits to 19825 proteins in 1836 species: Archae - 536; Bacteria - 15888; Metazoa - 3406; Fungi - 1824; Plants - 1134; Viruses - 3; Other Eukaryotes - 3248 (source: NCBI BLink). | 4 | 17686364 | 17684415 | 0 | 84.5 | 1465 | 0.209405374499714 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=9773207&x2=17686364&chr2=4&x1&num_seqs=2# | [NAME]
AT2G23320 | Encodes WRKY DNA-binding protein 15 (WRKY15). | 4 | 15290433 | 15290334 | 2e-13 | 85 | 80 | 0.0280210157618214 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=2&x1=9932013&x2=15290433&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT2G23320;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT2G23320;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G21160 | mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative; FUNCTIONS IN: mannosyl-oligosaccharide 1,2-alpha-mannosidase activity, calcium ion binding; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 47 (InterPro:IPR001382); BEST Arabidopsis thaliana [NAME] is: mannosyl-oligosaccharide 1,2-alpha-mannosidase, putative (TAIR:AT1G51590.1); Has 1485 Blast hits to 1396 proteins in 139 species: Archae - 0; Bacteria - 8; Metazoa - 690; [NAME]; Plants - 79; Viruses - 0; Other Eukaryotes - 177 (source: NCBI BLink). | 1 | 19132481 | 19132298 | 0 | 91.8 | 246 | 0.0276435554556692 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=7418416&x2=19132481&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G21160;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G21160;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G26960 | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana [NAME] is: unknown protein (TAIR:AT5G41050.1); Has 49 Blast hits to 49 proteins in 13 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 5 | 16451208 | 16451138 | 1e-10 | 87.3 | 70 | 0.0402993667242372 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=9946816&x2=16451208&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G26960;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G26960;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT3G46020 | RNA-binding protein, putative; FUNCTIONS IN: [NAME] binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, [NAME] (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana [NAME] is: RNA recognition motif (RRM)-containing protein (TAIR:AT5G59860.1); Has 20832 Blast hits to 15264 proteins in 631 species: Archae - 8; Bacteria - 979; Metazoa - 12428; [NAME]; Plants - 2944; Viruses - 0; Other Eukaryotes - 2115 (source: NCBI BLink). | 5 | 24131107 | 24131186 | 2e-11 | 86.2 | 72 | 0.0427299703264095 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=3&x1=16924335&x2=24131107&chr2=5&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT3G46020;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT3G46020;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G11920 | Encodes a putative activator of the anaphase-promoting complex/cyclosome. Promotes exit from the cell cycle and entry into the endocycle leading to endoreduplication. | 1 | 25156773 | 25156800 | 0.3 | 92.9 | 40 | 0.00684228532329798 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=7163320&x2=25156773&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G11920;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G11920;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT4G25830 | integral membrane family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana [NAME] is: integral membrane family protein (TAIR:[NAME]); Has 191 Blast hits to 191 proteins in 10 species: Archae - 0; Bacteria - 0; [NAME]; [NAME] - 0; Plants - 191; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 3 | 1233585 | 1233564 | 0.009 | 100 | 44 | 0.0159593761334784 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=4&x1=13133538&x2=1233585&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT4G25830;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT4G25830;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G11190 | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | 1 | 5283604 | 5283686 | 1e-10 | 85.5 | 70 | 0.0351758793969849 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=3564977&x2=5283604&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G11190;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G11190;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G25390 | encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11. | 1 | 5283600 | 5283685 | 4e-17 | 88.4 | 92 | 0.0605263157894737 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=8821229&x2=5283600&chr2=1&x1&num_seqs=2# | [NAME]
AT5G27060 | Receptor Like Protein 53 (AtRLP53); FUNCTIONS IN: protein binding, kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, N-terminal (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana [NAME] is: AtRLP34 (Receptor Like Protein 34); kinase/ protein binding (TAIR:AT3G11010.1); Has 94603 Blast hits to 23986 proteins in 921 species: Archae - 60; Bacteria - 6055; Metazoa - 33129; Fungi - 1077; Plants - 47038; Viruses - 29; Other Eukaryotes - 7215 (source: NCBI BLink). | 3 | 3453847 | 3450994 | 0 | 90 | 3388 | 0.594698964367211 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=9525410&x2=3453847&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G27060;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G27060;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
[NAME] | WD-40 repeat family protein; FUNCTIONS IN: signal transducer activity; INVOLVED IN: signal transduction; LOCATED IN: CUL4 RING ubiquitin ligase complex, [NAME] complex; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: WD-40 repeat family protein (TAIR:AT5G26900.1); Has 23036 Blast hits to 13391 proteins in 448 species: Archae - 38; Bacteria - 4148; [NAME]; [NAME] - 4386; Plants - 1988; Viruses - 0; Other Eukaryotes - 2943 (source: NCBI BLink). | 4 | 16042054 | 16041478 | 0 | 87.9 | 565 | 0.195501730103806 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=9531084&x2=16042054&chr2=4&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G27080;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G27080;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G52820 | WD-40 repeat family protein / notchless protein, putative; FUNCTIONS IN: nucleotide binding; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), NLE (InterPro:[NAME]), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), G-protein, beta subunit (InterPro:IPR001632); BEST Arabidopsis thaliana [NAME] is: transducin family protein / WD-40 repeat family protein (TAIR:AT3G49660.1); Has 92804 Blast hits to 28593 proteins in 717 species: Archae - 60; Bacteria - 7422; [NAME]; [NAME] - 18160; Plants - 9806; Viruses - 6; Other Eukaryotes - 13029 (source: NCBI BLink). | 1 | 20074234 | 20074215 | 0.3 | 100 | 40 | 0.00777604976671851 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=21418575&x2=20074234&chr2=1&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G52820;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G52820;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G56420 | F-box family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana [NAME] is: F-box family protein (TAIR:AT1G32375.1); Has 1578 Blast hits to 1543 proteins in 23 species: Archae - 0; Bacteria - 0; [NAME]; [NAME]; Plants - 1555; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). | 3 | 3685593 | 3685551 | 1e-05 | 90.7 | 54 | 0.0127538970240907 | no |  | I | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=22869966&x2=3685593&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G56420;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G56420;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G63010 | WD-40 repeat family protein; FUNCTIONS IN: nucleotide binding; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:[NAME]), WD40/[NAME] repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana [NAME] is: COP1 (CONSTITUTIVE PHOTOMORPHOGENIC 1); protein binding / ubiquitin-protein ligase (TAIR:[NAME]); Has 3047 Blast hits to 2853 proteins in 227 species: Archae - 2; Bacteria - 211; Metazoa - 1370; [NAME]; Plants - 447; Viruses - 0; Other Eukaryotes - 457 (source: NCBI BLink). | 2 | 10108959 | 10108935 | 0.036 | 96 | 42 | 0.0146904512067156 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=25298940&x2=10108959&chr2=2&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G63010;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G63010;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0
AT5G67320 | Encodes a WD-40 protein involved in histone deacetylation in response to abiotic stress.Identified in a screen for mutations with altered expression of stress induced genes. Functions as a repressor of cold tolerance induced genes. Loss of function mutants are hypersensitive to freezing. | 3 | 17564423 | 17564443 | 0.098 | 100 | 42 | 0.00802905754157905 | no |  |  | http://toxic.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn&word_size=15&drup1=10000&drdown1=10000&drup2=10000&drdown2=10000&dsid1=34474&dsid2=34474&chr1=5&x1=26875629&x2=17564423&chr2=3&x1&num_seqs=2# | http://synteny.cnr.berkeley.edu/CoGe/GEvo.pl?autogo=1&prog=blastn;spike_len=15;accn1=AT5G67320;dr1up=10000;dr1down=0;gbstart1=1;accn2=AT5G67320;dr2up=0;dr2down=10000;gbstart2=1;num_seqs=2;hsp_overlap_limit=0;hsp_size_limit=0