Spreadsheet: 7e7da16b-6356-4652-bfd6-349bdfe2dd11
Sheet: Sheet1

Table S1 All RDs identified in the human genome | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17 | Unnamed: 18 | Unnamed: 19 | Unnamed: 20 | Unnamed: 21 | Unnamed: 22 | Unnamed: 23 | Unnamed: 24 | Unnamed: 25 | Unnamed: 26 | Unnamed: 27 | Unnamed: 28 | Unnamed: 29 | Unnamed: 30 | Unnamed: 31 | Unnamed: 32 | Unnamed: 33 | Unnamed: 34 | Unnamed: 35 | Unnamed: 36 | Unnamed: 37 | Unnamed: 38 | Unnamed: 39
Acceptor |  |  |  |  |  |  | Donor |  |  |  |  |  |  |  | Divergence
GenoName | GenoStart | [NAME] | RepName | RepClass | Length |  | GenoName | GenoStart | [NAME] | Length |  | Donor Upstream/Downstream | Distance between d & a |  | Size of Filler | % div between donor and acceptor |  | Where present? |  | Located in Refseq Gene (location) - acceptor | [NAME] | Located in Refseq Gene (location) - donor | [NAME] | Acceptor has vertebrate MC? | Acceptor has mammal MC? | Acceptor has TFBS? | Donor has vertebrate MC? | Donor has mammal MC? | Donor has TFBS? | % match TFBS |  | # of donors | Location of 2nd donor | Dist between 2 donors | PolyA/T tail? (> 5bp) | TSDs? | Microhomologies? | Filler? | Deletions?
chr1 | 224786689 | 224786777 | ALUJ | SINE | 89 |  | chr1 | 224787583 | 224787652 | 70 |  | D | 806 |  | 19 | 0 |  | H |  | N |  | N |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 3' | n | n
chr10 | 130986332 | 130986439 | TIGGER2A | DNA | 108 |  | chr10 | 130985228 | 130985320 | 93 |  | U | 1012 |  | 15 | 0 |  | H |  | N |  | N |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | n | 9 bp 5'/4 bp 3' | 3 bp 3'
chr10 | 96228347 | 96228586 | ALUSC | SINE | 239 |  | chr10 | 96229334 | 96229573 | 239 |  | D | 748 |  | 0 | 0.4201680672268893 |  | H |  | Intron | TBC1D12 | Intron | TBC1D12 |  |  |  |  |  |  |  |  | 1 |  |  | n | 4 bp | 6 bp 5' | n | n
chr11 | 122113399 | 122113556 | L2 | LINE | 158 |  | chr11 | 122112400 | 122112553 | 154 |  | U | 846 |  | 4 | 1.948051948051943 |  | H |  | Intron | UBASH3B | Intron | UBASH3B |  |  |  |  |  |  |  |  |  |  |  | n | n | 2 bp 5' | 4 bp 3' | 6 bp 3'
chr12 | 54320736 | 54320817 | MER49 | LTR | 82 |  | chr12 | 54318146 | 54318227 | 82 |  | U | 2509 |  | 0 | 0 |  | H |  | N |  | N |  |  |  |  |  |  |  |  |  |  |  |  | n | 5 bp | 4 bp 5' | n | n
chr13 | 106474058 | 106474295 | LTR9B | LTR | 237 |  | chr13 | 106475923 | 106476129 | 206 |  | D | 1628 |  | 31 | 0.4854368932038833 |  | H |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chrY:8097050-8097073 | Diff chr | n | n | n | 4 bp 3' | n
chr15 | 31987740 | 31988005 | L1MB3 | LINE | 265 |  | chr15 | 31988849 | 31989114 | 265 |  | D | 844 |  | 0 | 0 |  | H |  | Intron | AVEN | Intron | AVEN |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 5'/3 bp 3' | n | 12 bp 3'
chr17 | 56774348 | 56774495 | ALUSX | SINE | 147 |  | chr17 | 56775328 | 56775473 | 145 |  | D | 833 |  | 2 | 0 |  | H |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 2 bp 5'/3 bp 3' | n | 7 bp 5'
chr18 | 26242863 | 26243040 | LTR76 | LTR | 177 |  | chr18 | 26243826 | 26243993 | 167 |  | D | 786 |  | 10 | 0.5988023952095856 |  | H |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 3' | 2 bp 5' | 1 bp 3'
chr2 | 235427735 | 235428072 | MER46C | DNA | 337 |  | chr2 | 235426208 | 235426540 | 332 |  | U | 1195 |  | 5 | 1.506024096385539 |  | H |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 3' | n | 9 bp 3'
chr2 | 47268768 | 47268859 | ALUJB | SINE | 91 |  | chr2 | 47267165 | 47267256 | 91 |  | U | 1512 |  | 0 | 3.333333333333333 |  | H |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | 13 bp | 3 bp 5'/2 bp 3' | n | n
chr5 | 103039643 | 103039927 | MER5A1 | DNA | 284 |  | chr5 | 103042960 | 103043235 | 275 |  | D | 3033 |  | 9 | 0 |  | H |  | n |  | n |  | y | y |  | y | y |  |  |  | 1 |  |  | n | n | 2 bp 5'/3 bp 3' | n | 4 bp 3'
chr5 | 5754098 | 5754240 | L1ME2 | LINE | 142 |  | chr5 | 5753510 | 5753648 | 138 |  | U | 450 |  | 4 | 2.222222222222225 |  | H |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 3 bp 5' | 6 bp 5' | 10 bp 3'
chr6 | 14395452 | 14395652 | MER21C | LTR | 200 |  | chr6 | 14394116 | 14394296 | 180 |  | U | 1156 |  | 20 | 0 |  | H |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 3' | 20 bp 5' | n
chrX | 116523390 | 116523600 | L1PA5 | LINE | 211 |  | chrX | 116525353 | 116525566 | 214 |  | D | 1753 |  | -3 | 2.857142857142858 |  | H |  | N |  | n
chr11 | 33161215 | 33161359 | L1MB3 | LINE | 145 |  | chr11 | 33163889 | 33164028 | 140 |  | D | 2530 |  | 5 | 15.32846715328468 |  | All primates |  | N |  | N
chr12 | 118617156 | 118617284 | L1M4 | LINE | 129 |  | chr12 | 118618471 | 118618599 | 129 |  | D | 1187 |  | 0 | 8.527131782945741 |  | All primates |  | Intron | CIT | Intron | CIT
chr18 | 37635124 | 37635251 | L1M5 | LINE | 128 |  | chr18 | 37636222 | 37636283 | 62 |  | D | 971 |  | 66 | 3.2258064516129 |  | All primates |  | N |  | n
chr2 | 170264670 | 170264829 | L1PA11 | LINE | 160 |  | chr2 | 170265827 | 170265982 | 156 |  | D | 998 |  | 4 | 7.692307692307687 |  | All primates |  | Intron | PHOSPHO2 | 3' UTR | PHOSPHO2
chr2 | 77409967 | 77410037 | L2 | LINE | 71 |  | chr2 | 77411152 | 77411202 | 51 |  | D | 1115 |  | 20 | 7.843137254901967 |  | All primates |  | N |  | n
chr20 | 479509 | 479615 | L2 | LINE | 107 |  | chr20 | 478840 | 478946 | 107 |  | U | 563 |  | 0 | 14.01869158878505 |  | All primates |  | N |  | n
chr4 | 80946491 | 80946653 | L1MC5 | LINE | 163 |  | chr4 | 80947532 | 80947668 | 137 |  | D | 879 |  | 26 | 11.76470588235294 |  | All primates |  | N |  | n
chr5 | 110076137 | 110076303 | L1MA2 | LINE | 167 |  | chr5 | 110077910 | 110078031 | 122 |  | D | 1607 |  | 45 | 9.836065573770492 |  | All primates |  | Intron | FLJ43080 | Intron | FLJ43080
chr6 | 56330184 | 56330458 | KANGA1B | DNA | 275 |  | chr6 | 56329498 | 56329716 | 219 |  | U | 468 |  | 56 | 10.7981220657277 |  | All primates |  | N |  | n
chr7 | 4664002 | 4664107 | L1ME3B | LINE | 106 |  | chr7 | 4662091 | 4662200 | 110 |  | U | 1802 |  | -4 | 6.730769230769229 |  | All primates |  | N |  | n
chr9 | 11769289 | 11769358 | MER90A | LTR | 70 |  | chr9 | 11767432 | 11767486 | 55 |  | U | 1803 |  | 15 | 9.090909090909093 |  | All primates |  | N |  | n
chr1 | 245645182 | 245645302 | MIR | SINE | 120 |  | chr1 | 245646857 | 245646963 | 106 |  | D | 1555 |  | 14 | 11.42857142857143 |  | All primates |  | n |  | Intron | NLRP3 |  |  |  |  |  |  |  |  | 1
chr1 | 234434493 | 234434660 | [NAME] | LINE | 168 |  | chr1 | 234436974 | 234437141 | 168 |  | D | 2314 |  | 0 | 8.433734939759042 |  | All primates |  | Intron | GPR137B | Intron | GPR137B
chr1 | 215337095 | 215337184 | ALUJB | SINE | 89 |  | chr1 | 215338081 | 215338165 | 84 |  | D | 897 |  | 5 | 8.333333333333337 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 215037382 | 215037538 | L1MC3 | LINE | 156 |  | chr1 | 215034341 | 215034495 | 154 |  | U | 2887 |  | 2 | 10.38961038961039 |  | All primates |  | Intron | ESRRG | Intron | ESRRG |  |  |  |  |  |  |  |  | 1
chr1 | 198241792 | 198241977 | ALUJB | SINE | 185 |  | chr1 | 198239829 | 198239961 | 132 |  | U | 1831 |  | 53 | 11.36363636363637 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 195885952 | 195886112 | L1PB1 | LINE | 160 |  | chr1 | 195881993 | 195882106 | 113 |  | U | 3846 |  | 47 | 11.50442477876106 |  | All primates |  | Intron | DENND1B | Intron | DENND1B |  |  |  |  |  |  |  |  | 2 | chr9:83,376,041-83,376,064 | Diff chr
chr1 | 184980566 | 184980817 | TIGGER2 | DNA | 251 |  | chr1 | 184981841 | 184982081 | 240 |  | D | 1024 |  | 11 | 10.8786610878661 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 183195830 | 183196013 | HAL1 | LINE | 183 |  | chr1 | 183194531 | 183194685 | 154 |  | U | 1145 |  | 29 | 13.1578947368421 |  | All primates |  | Intron | FAM129A | Intron | FAM129A | y | y |  | y | y |  |  |  | 1
chr1 | 145251725 | 145251908 | L1M5 | LINE | 184 |  | chr1 | 145252660 | 145252753 | 94 |  | D | 752 |  | 90 | 3.191489361702127 |  | All primates |  | n |  | N
chr1 | 119212676 | 119212826 | MLT1J2 | LTR | 150 |  | chr1 | 119211145 | 119211287 | 142 |  | U | 1389 |  | 8 | 6.474820143884896 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 116791037 | 116791199 | TIGGER3B | DNA | 162 |  | chr1 | 116794179 | 116794339 | 160 |  | D | 2980 |  | 2 | 1.935483870967747 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 114136756 | 114136841 | ALUJO | SINE | 85 |  | chr1 | 114135121 | 114135206 | 85 |  | U | 1550 |  | 0 | 16.47058823529412 |  | All primates |  | Intron | RSBN1 | Intron | RSBN1 |  |  |  |  |  |  |  |  | 1
chr1 | 95811452 | 95811675 | ERVL-E | LTR | 223 |  | chr1 | 95814474 | 95814694 | 220 |  | D | 2799 |  | 3 | 12.84403669724771 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 88171887 | 88172048 | ALUSG | SINE | 161 |  | chr1 | 88170817 | 88170978 | 161 |  | U | 909 |  | 0 | 6.211180124223603 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 87428221 | 87428431 | L2 | LINE | 211 |  | chr1 | 87429911 | 87430109 | 199 |  | D | 1480 |  | 12 | 10.65989847715736 |  | All primates |  | n |  | N
chr1 | 83753171 | 83753356 | MLT1B | LTR | 185 |  | chr1 | 83751930 | 83752072 | 142 |  | U | 1099 |  | 43 | 9.285714285714286 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 74562649 | 74562862 | MER54A | LTR | 213 |  | chr1 | 74561374 | 74561580 | 206 |  | U | 1069 |  | 7 | 12.62135922330098 |  | All primates |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr1 | 54156420 | 54156592 | MLT1I | LTR | 172 |  | chr1 | 54159759 | 54159928 | 169 |  | D | 3167 |  | 3 | 4.848484848484846 |  | All primates |  | n |  | 3' UTR | C1orf41 |  |  |  |  |  |  |  |  | 1
chr1 | 49877665 | 49877721 | MIR | SINE | 56 |  | chr1 | 49876573 | 49876629 | 56 |  | U | 1036 |  | 0 | 7.272727272727275 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 46589049 | 46589132 | MLT1J | LTR | 83 |  | chr1 | 46586633 | 46586677 | 44 |  | U | 2372 |  | 39 | 4.545454545454541 |  | All primates |  | Intron | NSUN4 | Intron | NSUN4 |  |  |  |  |  |  |  |  | 1
chr1 | 42247579 | 42247887 | HAL1 | LINE | 308 |  | chr1 | 42248755 | 42249056 | 301 |  | D | 868 |  | 7 | 8.30564784053156 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 23724636 | 23724779 | MIRB | SINE | 143 |  | chr1 | 23722597 | 23722737 | 140 |  | U | 1899 |  | 3 | 12.68656716417911 |  | All primates |  | Intron | E2F2 | Intron | E2F2 |  |  |  |  |  |  |  |  | 1
chr1 | 20897853 | 20897918 | L2 | LINE | 66 |  | chr1 | 20901612 | 20901677 | 66 |  | D | 3694 |  | 0 | 15.15151515151515 |  | All primates |  | Intron | KIF17 | Intron | KIF17
chr1 | 12533046 | 12533305 | ALUJO | SINE | 259 |  | chr1 | 12536153 | 12536401 | 248 |  | D | 2848 |  | 11 | 8.870967741935488 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 132103729 | 132103908 | L1MEC | LINE | 180 |  | chr10 | 132105866 | 132106017 | 152 |  | D | 1958 |  | 28 | 12.58278145695364 |  | All primates |  | N |  | N
chr10 | 131613481 | 131613630 | ALUSX | SINE | 149 |  | chr10 | 131614607 | 131614757 | 150 |  | D | 977 |  | -1 | 10.41666666666666 |  | All primates |  | Intron | EBF3 | Intron | EBF3 |  |  |  |  |  |  |  |  | 1
chr10 | 126050525 | 126050655 | THE1B | LTR | 130 |  | chr10 | 126049360 | 126049460 | 100 |  | U | 1065 |  | 30 | 15 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 122450021 | 122450237 | L1M3B | LINE | 217 |  | chr10 | 122450981 | 122451177 | 197 |  | D | 744 |  | 20 | 10.76923076923076 |  | All primates |  | N |  | N |  | y | y
chr10 | 117928797 | 117928941 | MIR | SINE | 144 |  | chr10 | 117929748 | 117929886 | 138 |  | D | 807 |  | 6 | 6.521739130434778 |  | All primates |  | Intron | [NAME] | Intron | [NAME] | y | y |  | y | y |  |  |  | 1
chr10 | 108301807 | 108301906 | [NAME] | LTR | 99 |  | chr10 | 108303061 | 108303141 | 80 |  | D | 1155 |  | 19 | 10 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 101735230 | 101735539 | ALUSX | SINE | 309 |  | chr10 | 101732830 | 101733134 | 304 |  | U | 2096 |  | 5 | 6.578947368421051 |  | All primates |  | n |  | n |  |  |  |  | y |  |  |  |  | 1
chr10 | 95531871 | 95531989 | MIR | SINE | 118 |  | chr10 | 95530089 | 95530199 | 110 |  | U | 1672 |  | 8 | 7.272727272727275 |  | All primates |  | Intron | LGI1 | Intron | LGI1 |  |  |  |  |  |  |  |  | 1
chr10 | 95077079 | 95077172 | MLT1H1 | LTR | 93 |  | chr10 | 95075899 | 95075991 | 92 |  | U | 1088 |  | 1 | 14.13043478260869 |  | All primates |  | Intron | FER1L3 | Intron | FER1L3 |  |  |  |  |  |  |  |  | 1
chr10 | 94636469 | 94636639 | MIRB | SINE | 170 |  | chr10 | 94637734 | 94637843 | 109 |  | D | 1095 |  | 61 | 3.669724770642202 |  | All primates |  | Intron | EXOC6 | Intron | EXOC6 |  |  |  |  |  |  |  |  | 1
chr10 | 83739232 | 83739407 | L2 | LINE | 176 |  | chr10 | 83740040 | 83740180 | 141 |  | D | 633 |  | 35 | 5.755395683453235 |  | All primates |  | Intron | NRG3 | Intron | NRG3 | y | y
chr10 | 66812669 | 66812738 | TIGGER7 | DNA | 69 |  | chr10 | 66814068 | 66814135 | 67 |  | D | 1330 |  | 2 | 10.60606060606061 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 59343391 | 59343455 | MLT1J2 | LTR | 64 |  | chr10 | 59342511 | 59342566 | 55 |  | U | 825 |  | 9 | 0 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 55879291 | 55879394 | MER2 | DNA | 103 |  | chr10 | 55881828 | 55881911 | 83 |  | D | 2434 |  | 20 | 10.84337349397591 |  | All primates |  | Intron | PCDH15 | Intron | PCDH15 |  |  |  |  |  |  |  |  | 1
chr10 | 54285936 | 54286077 | TIGGER1 | DNA | 141 |  | chr10 | 54286847 | 54286977 | 130 |  | D | 770 |  | 11 | 6.923076923076921 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 35114634 | 35114892 | ALUJO | SINE | 258 |  | chr10 | 35117025 | 35117254 | 229 |  | D | 2133 |  | 29 | 12.28070175438597 |  | All primates |  | Intron | PARD3 | Intron | PARD3 |  |  |  |  |  |  |  |  | 1
chr10 | 29165541 | 29165652 | ALUJO | SINE | 111 |  | chr10 | 29164842 | 29164940 | 98 |  | U | 601 |  | 13 | 6.122448979591832 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 23092545 | 23092647 | L1MA4 | LINE | 102 |  | chr10 | 23093486 | 23093545 | 59 |  | D | 839 |  | 43 | 10.16949152542372 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 13914659 | 13914744 | ALUJO | SINE | 85 |  | chr10 | 13909742 | 13909817 | 75 |  | U | 4842 |  | 10 | 16 |  | All primates |  | Intron | FRMD4A | Intron | FRMD4A |  |  |  |  |  |  |  |  | 1
chr10 | 10649603 | 10649661 | LTR16A | LTR | 58 |  | chr10 | 10651063 | 10651116 | 53 |  | D | 1402 |  | 5 | 13.20754716981132 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 131724634 | 131724750 | LTR33 | LTR | 116 |  | chr11 | 131726733 | 131726842 | 109 |  | D | 1983 |  | 7 | 12.03703703703703 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 127089042 | 127089158 | MLT1B | LTR | 116 |  | chr11 | 127090280 | 127090385 | 105 |  | D | 1122 |  | 11 | 10.57692307692307 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 126435523 | 126435613 | TIGGER2 | DNA | 90 |  | chr11 | 126436353 | 126436427 | 74 |  | D | 740 |  | 16 | 13.51351351351351 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 126047163 | 126047455 | L1MC3 | LINE | 292 |  | chr11 | 126050220 | 126050501 | 281 |  | D | 2765 |  | 11 | 15.35714285714286 |  | All primates |  | Intron | [NAME] | Intron | [NAME] | y | y | y | y | y |  |  | Y | 1
chr11 | 125342882 | 125342957 | ALUJ | SINE | 76 |  | chr11 | 125339824 | 125339897 | 74 |  | U | 2985 |  | 2 | 9.459459459459463 |  | All primates |  | Intron | CDON | Intron | CDON
chr11 | 119325420 | 119325611 | MLT1H | LTR | 191 |  | chr11 | 119322020 | 119322205 | 185 |  | U | 3215 |  | 6 | 7.027027027027022 |  | All primates |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr11 | 117725272 | 117725451 | MER5A1 | DNA | 179 |  | chr11 | 117727600 | 117727772 | 172 |  | D | 2149 |  | 7 | 4.651162790697672 |  | All primates |  | Intron | CD3G | Intron | CD3G |  |  |  | y |  |  |  |  | 1
chr11 | 113807144 | 113807299 | MIRB | SINE | 155 |  | chr11 | 113808344 | 113808507 | 163 |  | D | 1045 |  | -8 | 8.387096774193548 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 113215086 | 113215193 | L2 | LINE | 108 |  | chr11 | 113213580 | 113213678 | 99 |  | U | 1408 |  | 9 | 4.040404040404044 |  | All primates |  | Intron | USP28 | Intron | USP28
chr11 | 107925862 | 107926034 | MLT1H | LTR | 172 |  | chr11 | 107924441 | 107924583 | 142 |  | U | 1279 |  | 30 | 12.67605633802818 |  | All primates |  | Intron | EXPH5 | Intron | EXPH5 |  |  |  |  |  |  |  |  | 1
chr11 | 101888564 | 101888711 | ALUJB | SINE | 147 |  | chr11 | 101885980 | 101886126 | 146 |  | U | 2438 |  | 1 | 11.64383561643836 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 86820975 | 86821232 | MER67A | LTR | 257 |  | chr11 | 86821514 | 86821755 | 241 |  | D | 282 |  | 16 | 11.39240506329114 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 86449657 | 86449760 | MIR | SINE | 103 |  | chr11 | 86451535 | 86451603 | 68 |  | D | 1775 |  | 35 | 3.125 |  | All primates |  | Intron | TMEM135 | Intron | TMEM135 |  |  |  |  |  |  |  |  | 1
chr11 | 83863061 | 83863251 | MIRB | SINE | 190 |  | chr11 | 83864078 | 83864250 | 172 |  | D | 827 |  | 18 | 15.69767441860465 |  | All primates |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr11 | 77117756 | 77117950 | L2 | LINE | 195 |  | chr11 | 77122109 | 77122236 | 128 |  | D | 4159 |  | 67 | 13.28125 |  | All primates |  | Intron | RSF1 | Intron | RSF1
chr11 | 70436371 | 70436498 | THE1A | LTR | 127 |  | chr11 | 70434741 | 70434837 | 96 |  | U | 1534 |  | 31 | 7.291666666666663 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 31049689 | 31049804 | MLT1F | LTR | 115 |  | chr11 | 31047978 | 31048093 | 115 |  | U | 1596 |  | 0 | 9.649122807017541 |  | All primates |  | Intron | DCDC5 | Intron | DCDC5 |  |  |  |  |  |  |  |  | 1
chr11 | 20352799 | 20353001 | MLT1D | LTR | 202 |  | chr11 | 20351716 | 20351874 | 158 |  | U | 925 |  | 44 | 9.740259740259738 |  | All primates |  | Intron | HTATIP2 | Intron | HTATIP2 |  |  |  |  |  |  |  |  | 1
chr11 | 19790153 | 19790245 | MER5A | DNA | 92 |  | chr11 | 19790918 | 19791009 | 91 |  | D | 673 |  | 1 | 6.593406593406592 |  | All primates |  | Intron | NAV2 | Intron | NAV2 |  |  |  |  |  |  |  |  | 1
chr11 | 11535536 | 11535641 | MIR | SINE | 105 |  | chr11 | 11538650 | 11538736 | 86 |  | D | 3009 |  | 19 | 6.976744186046513 |  | All primates |  | Intron | GALNTL4 | Intron | GALNTL4 |  |  |  |  |  |  |  |  | 1
chr12 | 125086428 | 125086553 | MER68 | LTR | 126 |  | chr12 | 125087068 | 125087174 | 107 |  | D | 515 |  | 19 | 9.345794392523366 |  | All primates |  | N |  | N
chr12 | 124389943 | 124390294 | MLT1B | LTR | 351 |  | chr12 | 124388767 | 124389051 | 284 |  | U | 892 |  | 67 | 10.75268817204301 |  | All primates |  | Intron | TMEM132B | Intron | TMEM132B |  |  |  |  |  |  |  |  | 1
chr12 | 116379579 | 116379861 | MER20 | DNA | 282 |  | chr12 | 116377970 | 116378241 | 271 |  | U | 1338 |  | 11 | 7.011070110701112 |  | All primates |  | 3' UTR | [NAME] | 3' UTR | [NAME] |  |  |  |  |  |  |  |  | 1
chr12 | 111786889 | 111787006 | MER5A | DNA | 117 |  | chr12 | 111788155 | 111788263 | 108 |  | D | 1149 |  | 9 | 16.66666666666666 |  | All primates |  | Intron | RPH3A | Intron | RPH3A |  |  |  |  |  |  |  |  | 1
chr12 | 101490116 | 101490206 | MSTB2 | LTR | 91 |  | chr12 | 101488563 | 101488616 | 54 |  | U | 1500 |  | 37 | 7.407407407407407 |  | All primates |  | N |  | N |  | y | y
chr12 | 80741763 | 80741854 | MER65D | LTR | 92 |  | chr12 | 80739222 | 80739277 | 56 |  | U | 2486 |  | 36 | 10.71428571428571 |  | All primates |  | N |  | N
chr12 | 78235893 | 78236034 | [NAME] | LTR | 141 |  | chr12 | 78238021 | 78238154 | 133 |  | D | 1987 |  | 8 | 9.160305343511455 |  | All primates |  | Intron | SYT1 | Intron | SYT1 |  |  |  |  |  |  |  |  | 1
chr12 | 62042006 | 62042442 | L1PA16 | LINE | 436 |  | chr12 | 62040728 | 62041172 | 444 |  | U | 834 |  | -8 | 13.92111368909513 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 60211222 | 60211400 | L1PA16 | LINE | 178 |  | chr12 | 60210638 | 60210767 | 129 |  | U | 455 |  | 49 | 12.4031007751938 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chrX:131,405,891-131,405,917 | Diff chr
chr12 | 40334772 | 40334998 | MLT1D | LTR | 226 |  | chr12 | 40333225 | 40333396 | 171 |  | U | 1376 |  | 55 | 12.86549707602339 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 26095710 | 26096001 | MER82 | DNA | 291 |  | chr12 | 26093653 | 26093888 | 235 |  | U | 1822 |  | 56 | 9.829059829059828 |  | All primates |  | Intron | RASSF8 | Intron | RASSF8 |  |  |  |  |  |  |  |  | 1
chr12 | 25738658 | 25738906 | TIGGER7 | DNA | 248 |  | chr12 | 25739267 | 25739471 | 204 |  | D | 361 |  | 44 | 10.83743842364532 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 14985326 | 14985436 | L1PA16 | LINE | 111 |  | chr12 | 14982303 | 14982409 | 107 |  | U | 2917 |  | 4 | 11.21495327102804 |  | All primates |  | N |  | Intron | ERP27
chr12 | 14201920 | 14202430 | MLT1A1 | LTR | 510 |  | chr12 | 14204414 | 14204763 | 349 |  | D | 1984 |  | 161 | 7.163323782234954 |  | All primates |  | n |  | n |  | y | y |  | y |  |  |  |  | 1
chr12 | 12575662 | 12575825 | ALUSX | SINE | 163 |  | chr12 | 12574940 | 12575079 | 139 |  | U | 583 |  | 24 | 10.07194244604317 |  | All primates |  | Intron | DUSP16 | Intron | DUSP16 |  |  |  |  |  |  |  |  | 1
chr13 | 93289765 | 93290028 | L1PB | LINE | 264 |  | chr13 | 93291267 | 93291457 | 191 |  | D | 1239 |  | 73 | 6.806282722513091 |  | All primates |  | Intron | [NAME] | Intron | [NAME] | y | y
chr13 | 87197066 | 87197202 | L1P4 | LINE | 137 |  | chr13 | 87195153 | 87195281 | 129 |  | U | 1785 |  | 8 | 11.62790697674419 |  | All primates |  | N |  | N
chr13 | 81384831 | 81385082 | MIR | SINE | 251 |  | chr13 | 81382303 | 81382524 | 221 |  | U | 2307 |  | 30 | 8.675799086757996 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 81325313 | 81325422 | L1M4 | LINE | 110 |  | chr13 | 81323349 | 81323455 | 107 |  | U | 1858 |  | 3 | 15.88785046728972 |  | All primates |  | N |  | N
chr13 | 78227382 | 78227536 | MER113 | DNA | 154 |  | chr13 | 78228228 | 78228363 | 135 |  | D | 692 |  | 19 | 10.60606060606061 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 66771238 | 66771344 | LTR16A | LTR | 106 |  | chr13 | 66770408 | 66770501 | 93 |  | U | 737 |  | 13 | 13.04347826086957 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 58283351 | 58283452 | L1PA17 | LINE | 102 |  | chr13 | 58282263 | 58282357 | 95 |  | U | 994 |  | 7 | 5.263157894736848 |  | All primates |  | N |  | N
chr13 | 49094525 | 49094634 | ALUJO | SINE | 109 |  | chr13 | 49095915 | 49096024 | 109 |  | D | 1281 |  | 0 | 15.74074074074074 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 43501402 | 43501495 | MLT1B | LTR | 93 |  | chr13 | 43500574 | 43500654 | 80 |  | U | 748 |  | 13 | 11.53846153846154 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 31146425 | 31146519 | L1MB5 | LINE | 94 |  | chr13 | 31147522 | 31147612 | 90 |  | D | 1003 |  | 4 | 6.896551724137934 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 30114274 | 30114329 | ALUJO | SINE | 55 |  | chr13 | 30115224 | 30115274 | 50 |  | D | 895 |  | 5 | 12 |  | All primates |  | Intron | USPL1 | Intron | USPL1 |  |  |  |  |  |  |  |  | 1
chr13 | 29806377 | 29806484 | L1MC5 | LINE | 107 |  | chr13 | 29804218 | 29804305 | 87 |  | U | 2072 |  | 20 | 10.3448275862069 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 26385937 | 26386020 | MLT1A0 | LTR | 83 |  | chr13 | 26385356 | 26385431 | 75 |  | U | 506 |  | 8 | 10.66666666666667 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 98157320 | 98157527 | TIGGER1 | DNA | 207 |  | chr14 | 98153837 | 98153990 | 153 |  | U | 3330 |  | 54 | 7.189542483660127 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chr14:98,153,430-98,153,471 | 366
chr14 | 95331025 | 95331084 | LTR16A1 | LTR | 59 |  | chr14 | 95331528 | 95331580 | 52 |  | D | 444 |  | 7 | 17.30769230769231 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 90125769 | 90125967 | L1MC4A | LINE | 199 |  | chr14 | 90126759 | 90126909 | 151 |  | D | 792 |  | 48 | 13.24503311258278 |  | All primates |  | Intron | TTC7B | Intron | TTC7B
chr14 | 87791686 | 87791849 | ALUJO | SINE | 163 |  | chr14 | 87790264 | 87790374 | 110 |  | U | 1312 |  | 53 | 10 |  | All primates |  | Intron | KCNK10 | Intron | KCNK10 |  |  |  |  |  |  |  |  | 2 | chr11:17,782,916-17,782,960 | Diff chr
chr14 | 68990107 | 68990295 | MER58B | DNA | 188 |  | chr14 | 68989153 | 68989300 | 147 |  | U | 807 |  | 41 | 4.081632653061229 |  | All primates |  | Intron | SLC39A9 | Intron | SLC39A9 |  |  |  |  |  |  |  |  | 1
chr14 | 64470400 | 64470487 | MIR | SINE | 87 |  | chr14 | 64472098 | 64472182 | 84 |  | D | 1611 |  | 3 | 10.71428571428571 |  | All primates |  | 3' UTR | CHURC1 | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 48986065 | 48986214 | MER51E | LTR | 149 |  | chr14 | 48987961 | 48988108 | 147 |  | D | 1747 |  | 2 | 10.8843537414966 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 25720924 | 25721100 | MIRB | SINE | 176 |  | chr14 | 25720225 | 25720366 | 141 |  | U | 558 |  | 35 | 15 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 20692167 | 20692416 | ALUJO | SINE | 249 |  | chr14 | 20693971 | 20694214 | 243 |  | D | 1555 |  | 6 | 4.938271604938271 |  | All primates |  | n |  | 5' UTR | OR5AU1 |  |  |  |  |  |  |  |  | 1
chr15 | 99728543 | 99728694 | ALUSG | SINE | 151 |  | chr15 | 99726864 | 99727011 | 147 |  | U | 1532 |  | 4 | 8.843537414965985 |  | All primates |  | Intron | PCSK6 | Intron | PCSK6 |  |  |  |  |  |  |  |  | 1
chr15 | 88443162 | 88443252 | L2 | LINE | 91 |  | chr15 | 88442102 | 88442171 | 70 |  | U | 991 |  | 21 | 11.42857142857143 |  | All primates |  | Intron | IDH2 | Intron | IDH2
chr15 | 84395813 | 84396284 | MLT1B | LTR | 471 |  | chr15 | 84398865 | 84399309 | 444 |  | D | 2581 |  | 27 | 6.561085972850678 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr15 | 81614304 | 81614519 | MER5A | DNA | 215 |  | chr15 | 81612508 | 81612667 | 159 |  | U | 1637 |  | 56 | 8.333333333333337 |  | All primates |  | Intron | HDGFRP3 | Intron | HDGFRP3 |  |  |  |  |  |  |  |  | 2 | chr7:22,957,926-22,957,947 | Diff chr
chr15 | 81390732 | 81390801 | [NAME] | SINE | 69 |  | chr15 | 81392591 | 81392650 | 59 |  | D | 1790 |  | 10 | 8.47457627118644 |  | All primates |  | Intron | HOMER2 | Intron | HOMER2 |  |  |  |  |  |  |  |  | 1
chr15 | 75018397 | 75018465 | ALUJ | SINE | 69 |  | chr15 | 75018828 | 75018889 | 62 |  | D | 363 |  | 7 | 4.918032786885251 |  | All primates |  | Intron | RCN2 | Intron | RCN2
chr15 | 67194986 | 67195084 | ALUJB | SINE | 99 |  | chr15 | 67194192 | 67194263 | 72 |  | U | 723 |  | 27 | 12.5 |  | All primates |  | N |  | n
chr15 | 56783907 | 56784004 | L1MB4 | LINE | 97 |  | chr15 | 56785645 | 56785740 | 95 |  | D | 1641 |  | 2 | 13.04347826086957 |  | All primates |  | Intron | ADAM10 | Intron | ADAM10 |  |  |  |  |  |  |  |  | 1
chr15 | 46894452 | 46894557 | MLT1C | LTR | 105 |  | chr15 | 46893213 | 46893313 | 100 |  | U | 1139 |  | 5 | 6.000000000000005 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 86402347 | 86402552 | L1PREC2 | LINE | 205 |  | chr16 | 86403335 | 86403525 | 190 |  | D | 783 |  | 15 | 7.407407407407407 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 77634936 | 77635131 | [NAME] | LTR | 195 |  | chr16 | 77633831 | 77634021 | 190 |  | U | 915 |  | 5 | 10.52631578947368 |  | All primates |  | Intron | WWOX | Intron | WWOX | y | y |  | y | y |  |  |  | 1
chr16 | 68252585 | 68252745 | ALUJO | SINE | 160 |  | chr16 | 68254364 | 68254516 | 152 |  | D | 1619 |  | 8 | 12.5 |  | All primates |  | Intron | NFAT5 | Intron | NFAT5 | y |  |  | y | y |  |  |  | 1
chr16 | 65402803 | 65403045 | ALUJB | SINE | 242 |  | chr16 | 65401493 | 65401738 | 245 |  | U | 1065 |  | -3 | 8.823529411764708 |  | All primates |  | Intron | APPBP1 | Intron | APPBP1 |  |  |  |  |  |  |  |  | 1
chr16 | 58500325 | 58500494 | MLT1A0 | LTR | 169 |  | chr16 | 58501393 | 58501530 | 137 |  | D | 899 |  | 32 | 10.44776119402985 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 57890865 | 57891141 | MER20 | DNA | 277 |  | chr16 | 57891826 | 57891956 | 131 |  | D | 685 |  | 146 | 4.580152671755721 |  | All primates |  | N |  | n
chr16 | 53596556 | 53596645 | L1MC1 | LINE | 89 |  | chr16 | 53594726 | 53594806 | 80 |  | U | 1750 |  | 9 | 13.75 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 50996469 | 50996833 | [NAME] | LTR | 364 |  | chr16 | 50998036 | 50998365 | 329 |  | D | 1203 |  | 35 | 16.10942249240122 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 50913260 | 50913401 | L1MA8 | LINE | 141 |  | chr16 | 50911330 | 50911450 | 120 |  | U | 1810 |  | 21 | 12.5 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 49887307 | 49887416 | MLT1D | LTR | 109 |  | chr16 | 49888635 | 49888717 | 82 |  | D | 1219 |  | 27 | 8.536585365853655 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 27085127 | 27085235 | ALUJO | SINE | 108 |  | chr16 | 27083600 | 27083701 | 101 |  | U | 1426 |  | 7 | 11.88118811881188 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 24865744 | 24865879 | MER34 | LTR | 135 |  | chr16 | 24868024 | 24868113 | 89 |  | D | 2145 |  | 46 | 4.49438202247191 |  | All primates |  | Intron | ARHGAP17 | Intron | ARHGAP17 |  |  |  |  |  |  |  |  | 1
chr16 | 12898189 | 12898409 | MER20 | DNA | 220 |  | chr16 | 12899741 | 12899941 | 200 |  | D | 1332 |  | 20 | 12 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 7355620 | 7355685 | MER20 | DNA | 65 |  | chr16 | 7357208 | 7357249 | 41 |  | D | 1523 |  | 24 | 9.756097560975608 |  | All primates |  | Intron | A2BP1 | Intron | A2BP1 |  |  |  |  |  |  |  |  | 1
chr16 | 6524421 | 6524707 | L1ME2 | LINE | 286 |  | chr16 | 6525947 | 6526160 | 213 |  | D | 1240 |  | 73 | 9.38967136150235 |  | All primates |  | Intron | A2BP1 | Intron | A2BP1 |  |  |  |  |  |  |  |  | 1
chr16 | 5889013 | 5889094 | ALUJO | SINE | 81 |  | chr16 | 5891012 | 5891074 | 62 |  | D | 1918 |  | 19 | 12.90322580645161 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 75337584 | 75337672 | CHARLIE2 | DNA | 88 |  | chr17 | 75339204 | 75339287 | 83 |  | D | 1532 |  | 5 | 10.97560975609756 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 68275054 | 68275136 | L2 | LINE | 83 |  | chr17 | 68273335 | 68273405 | 71 |  | U | 1649 |  | 12 | 7.042253521126762 |  | All primates |  | Intron | SLC39A11 | Intron | SLC39A11
chr17 | 67397958 | 67398126 | MLT1F-INT | LTR | 169 |  | chr17 | 67398489 | 67398652 | 164 |  | D | 363 |  | 5 | 13.92405063291139 |  | All primates |  | N |  | n
chr17 | 67387093 | 67387269 | L1ME2 | LINE | 176 |  | chr17 | 67389267 | 67389386 | 119 |  | D | 1998 |  | 57 | 6.72268907563025 |  | All primates |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr17 | 67366810 | 67367116 | ALUSX | SINE | 306 |  | chr17 | 67368039 | 67368291 | 252 |  | D | 923 |  | 54 | 8.730158730158733 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 60620486 | 60620729 | L1MB7 | LINE | 243 |  | chr17 | 60619878 | 60620102 | 224 |  | U | 384 |  | 19 | 9.375 |  | All primates |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr17 | 57593693 | 57593921 | L3 | LINE | 228 |  | chr17 | 57596171 | 57596399 | 228 |  | D | 2250 |  | 0 | 11.16071428571429 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 57080480 | 57080755 | [NAME] | LINE | 275 |  | chr17 | 57077841 | 57078040 | 199 |  | U | 2440 |  | 76 | 8.585858585858585 |  | All primates |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr17 | 45525553 | 45525742 | L2 | LINE | 190 |  | chr17 | 45527193 | 45527361 | 169 |  | D | 1451 |  | 21 | 12.72727272727273 |  | All primates |  | N |  | n
chr17 | 42849196 | 42849318 | TIGGER2 | DNA | 122 |  | chr17 | 42847207 | 42847323 | 116 |  | U | 1873 |  | 6 | 6.086956521739129 |  | All primates |  | Intron | C17orf57 | I/E/I | C17orf57 |  |  |  | y | y |  |  |  | 1
chr17 | 29660781 | 29660963 | MLT1E2 | LTR | 182 |  | chr17 | 29658280 | 29658429 | 149 |  | U | 2352 |  | 33 | 13.6986301369863 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 27949909 | 27950031 | TIGGER1 | DNA | 122 |  | chr17 | 27947677 | 27947787 | 110 |  | U | 2122 |  | 12 | 11.81818181818182 |  | All primates |  | Intron | MYO1D | Intron | MYO1D |  |  |  |  |  |  |  |  | 1
chr17 | 19545699 | 19545819 | ALUJO | SINE | 120 |  | chr17 | 19547853 | 19547973 | 120 |  | D | 2034 |  | 0 | 5 |  | All primates |  | Intron | SLC47A2 | Intron | SLC47A2 |  |  |  | y |  |  |  |  | 1
chr17 | 12077627 | 12077715 | MIR | SINE | 88 |  | chr17 | 12076644 | 12076732 | 88 |  | U | 895 |  | 0 | 9.195402298850574 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 9949208 | 9949401 | MER3 | DNA | 193 |  | chr17 | 9950213 | 9950397 | 184 |  | D | 812 |  | 9 | 8.743169398907103 |  | All primates |  | Intron | GAS7 | Intron | GAS7 |  |  |  |  |  |  |  |  | 1
chr17 | 8695620 | 8695690 | L1MB4 | LINE | 70 |  | chr17 | 8694653 | 8694719 | 66 |  | U | 901 |  | 4 | 12.30769230769231 |  | All primates |  | Intron | C17orf38 | Intron | C17orf38 |  |  |  |  |  |  |  |  | 1
chr17 | 6345674 | 6345840 | MER74B | LTR | 166 |  | chr17 | 6346549 | 6346702 | 153 |  | D | 709 |  | 13 | 11.18421052631579 |  | All primates |  | Intron | PITPNM3 | Intron | PITPNM3 |  |  |  |  |  |  |  |  | 1
chr18 | 72557595 | 72557778 | MSTC | LTR | 183 |  | chr18 | 72553526 | 72553631 | 105 |  | U | 3964 |  | 78 | 6.666666666666665 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 57459033 | 57459216 | L1MB4 | LINE | 183 |  | chr18 | 57462204 | 57462385 | 181 |  | D | 2988 |  | 2 | 5.524861878453036 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 56022172 | 56022337 | MADE1 | DNA | 165 |  | chr18 | 56022770 | 56022935 | 165 |  | D | 433 |  | 0 | 13.41463414634146 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 51289714 | 51289777 | ALUSG/X | SINE | 64 |  | chr18 | 51287848 | 51287902 | 55 |  | U | 1812 |  | 9 | 7.547169811320753 |  | All primates |  | Intron | TCF4 | Intron | TCF4
chr18 | 48330789 | 48331150 | L1MC3 | LINE | 361 |  | chr18 | 48332136 | 48332488 | 352 |  | D | 986 |  | 9 | 9.742120343839545 |  | All primates |  | Intron | DCC | Intron | DCC |  |  |  |  |  |  |  |  | 1
chr18 | 46519453 | 46519656 | L1PA10 | LINE | 203 |  | chr18 | 46518145 | 46518315 | 170 |  | U | 1138 |  | 33 | 1.764705882352946 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 41372036 | 41372339 | MLT1F | LTR | 303 |  | chr18 | 41373387 | 41373710 | 323 |  | D | 1048 |  | -20 | 8 |  | All primates |  | n |  | n |  | y | y | y | y | y | y | 2 TFBS - 1 @ 9/10 - 90%, 2 @ 11/13 - 85% |  | 1
chr18 | 39264747 | 39264979 | LTR8A | LTR | 232 |  | chr18 | 39265207 | 39265392 | 185 |  | D | 228 |  | 47 | 11.89189189189189 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 33742880 | 33743118 | L1PA16 | LINE | 238 |  | chr18 | 33741048 | 33741235 | 187 |  | U | 1645 |  | 51 | 7.486631016042777 |  | All primates |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr18 | 31989838 | 31989990 | CHESHIRE | DNA | 152 |  | chr18 | 31990878 | 31991023 | 145 |  | D | 888 |  | 7 | 8.965517241379306 |  | All primates |  | Intron | ELP2 | Intron | ELP2 |  |  |  |  |  |  |  |  | 1
chr18 | 26176943 | 26177045 | LTR60 | LTR | 103 |  | chr18 | 26176062 | 26176144 | 83 |  | U | 799 |  | 20 | 16.86746987951807 |  | All primates |  | N |  | n
chr18 | 24614042 | 24614129 | CHARLIE7 | DNA | 87 |  | chr18 | 24615524 | 24615598 | 74 |  | D | 1395 |  | 13 | 10.81081081081081 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 11803459 | 11803535 | L1ME1 | LINE | 76 |  | chr18 | 11801891 | 11801967 | 76 |  | U | 1492 |  | 0 | 2.631578947368418 |  | All primates |  | Intron | GNAL | Intron | GNAL |  |  |  | y | y |  |  |  | 1
chr18 | 8858809 | 8858938 | MLT1E1 | LTR | 129 |  | chr18 | 8859317 | 8859442 | 125 |  | D | 379 |  | 4 | 13.82113821138211 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 4132090 | 4132708 | [NAME] | LINE | 619 |  | chr18 | 4134859 | 4135442 | 584 |  | D | 2151 |  | 35 | 11.74438687392055 |  | All primates |  | N |  | n
chr18 | 1173622 | 1173767 | MLT1A0 | LTR | 145 |  | chr18 | 1174995 | 1175126 | 131 |  | D | 1228 |  | 14 | 9.160305343511455 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr19 | 41132471 | 41132574 | ALUJ/FLAM | SINE | 104 |  | chr19 | 41135182 | 41135232 | 51 |  | D | 2608 |  | 53 | 5.882352941176472 |  | All primates |  | N |  | n
chr19 | 2044334 | 2044515 | ALUSX | SINE | 181 |  | chr19 | 2043865 | 2044043 | 178 |  | U | 291 |  | 3 | 2.247191011235961 |  | All primates |  | Intron | MOBKL2A | Intron | MOBKL2A |  |  |  |  |  |  |  |  | 1
chr2 | 236801935 | 236802027 | L1MEC | LINE | 93 |  | chr2 | 236801150 | 236801230 | 81 |  | U | 705 |  | 12 | 10.25641025641025 |  | All primates |  | Intron | ASB18 | Intron | ASB18
chr2 | 231142105 | 231142181 | MER21C | LTR | 76 |  | chr2 | 231138876 | 231138928 | 52 |  | U | 3177 |  | 24 | 5.769230769230771 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 225404480 | 225404633 | MER115 | DNA | 153 |  | chr2 | 225407253 | 225407404 | 151 |  | D | 2620 |  | 2 | 9.333333333333337 |  | All primates |  | Intron | DOCK10 | n | DOCK10 | y | y |  | y | y |  |  |  | 1
chr2 | 223880448 | 223880842 | L2 | LINE | 395 |  | chr2 | 223883504 | 223883890 | 387 |  | D | 2662 |  | 8 | 11.16883116883117 |  | All primates |  | N |  | n
chr2 | 220889266 | 220889528 | ARTHUR1 | DNA | 263 |  | chr2 | 220886921 | 220887141 | 221 |  | U | 2125 |  | 42 | 10.45454545454545 |  | All primates |  | N |  | n
chr2 | 218744174 | 218744272 | MIRB | SINE | 98 |  | chr2 | 218742532 | 218742616 | 84 |  | U | 1558 |  | 14 | 11.90476190476191 |  | All primates |  | n |  | n |  |  |  | y |  |  | y | 11/12 = 92% |  | 1
chr2 | 204662220 | 204662352 | MSTD | LTR | 132 |  | chr2 | 204662987 | 204663120 | 133 |  | D | 635 |  | -1 | 11.53846153846154 |  | All primates |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr2 | 199244875 | 199245039 | L1PB4 | LINE | 164 |  | chr2 | 199245364 | 199245520 | 156 |  | D | 325 |  | 8 | 13.5483870967742 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 177575591 | 177575940 | MSTB | LTR | 349 |  | chr2 | 177572915 | 177573268 | 353 |  | U | 2323 |  | -4 | 10.66282420749279 |  | All primates |  | n |  | n |  | y | y | y | y | y | y | 9/10 =  90% |  | 1
chr2 | 175115984 | 175116072 | MLT1L | LTR | 88 |  | chr2 | 175116613 | 175116695 | 82 |  | D | 541 |  | 6 | 14.63414634146342 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 160428495 | 160428618 | [NAME] | DNA | 124 |  | chr2 | 160430484 | 160430608 | 125 |  | D | 1866 |  | -1 | 4.032258064516125 |  | All primates |  | Intron | [NAME] | Intron | [NAME]
chr2 | 155782213 | 155782293 | MIRB | SINE | 80 |  | chr2 | 155783180 | 155783258 | 78 |  | D | 887 |  | 2 | 5.128205128205132 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 136470794 | 136470930 | MIR | SINE | 136 |  | chr2 | 136472678 | 136472808 | 130 |  | D | 1748 |  | 6 | 6.299212598425196 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 135568617 | 135568760 | L1MA4 | LINE | 143 |  | chr2 | 135567182 | 135567315 | 133 |  | U | 1302 |  | 10 | 8.333333333333337 |  | All primates |  | Intron | RAB3GAP1 | Intron | RAB3GAP1 |  |  |  |  |  |  |  |  | 1
chr2 | 134143091 | 134143165 | L1M4 | LINE | 75 |  | chr2 | 134143638 | 134143697 | 60 |  | D | 473 |  | 15 | 5 |  | All primates |  | N |  | n
chr2 | 129313693 | 129313975 | ALUJO | SINE | 282 |  | chr2 | 129313000 | 129313224 | 224 |  | U | 469 |  | 58 | 7.58928571428571 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 124341010 | 124341108 | LTR26B | LTR | 98 |  | chr2 | 124341480 | 124341575 | 95 |  | D | 372 |  | 3 | 9.473684210526311 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 114629896 | 114630111 | L1PA10 | LINE | 215 |  | chr2 | 114628534 | 114628709 | 175 |  | U | 1187 |  | 40 | 9.714285714285719 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 104758254 | 104758404 | CHARLIE7 | DNA | 150 |  | chr2 | 104759133 | 104759241 | 108 |  | D | 729 |  | 42 | 11.11111111111112 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 95175245 | 95175419 | MER4D1 | LTR | 174 |  | chr2 | 95176033 | 95176201 | 168 |  | D | 614 |  | 6 | 9.815950920245397 |  | All primates |  | n |  | n |  | y |  |  | y |  |  |  |  | 1
chr2 | 84326992 | 84327171 | [NAME] | LTR | 179 |  | chr2 | 84327338 | 84327488 | 150 |  | D | 167 |  | 29 | 5.555555555555558 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 83436582 | 83436789 | L1MB1 | LINE | 207 |  | chr2 | 83440306 | 83440492 | 186 |  | D | 3517 |  | 21 | 11.29032258064516 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 75531568 | 75531814 | L1MEB | LINE | 247 |  | chr2 | 75528207 | 75528433 | 227 |  | U | 3135 |  | 20 | 8.41121495327103 |  | All primates |  | N |  | n
chr2 | 64558071 | 64558348 | MLT1J2 | LTR | 277 |  | chr2 | 64556434 | 64556695 | 261 |  | U | 1376 |  | 16 | 7.36434108527132 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 49143748 | 49143964 | L1MA5 | LINE | 216 |  | chr2 | 49148177 | 49148387 | 210 |  | D | 4213 |  | 6 | 13.8095238095238 |  | All primates |  | Intron | FSHR | Intron | FSHR |  |  |  |  |  |  |  |  | 1
chr2 | 44648852 | 44649188 | L2 | LINE | 337 |  | chr2 | 44647940 | 44648256 | 317 |  | U | 596 |  | 20 | 7.987220447284349 |  | All primates |  | Intron | C2ORF34 | Intron | C2ORF34
chr2 | 37125555 | 37125613 | L1ME1 | LINE | 58 |  | chr2 | 37128315 | 37128363 | 48 |  | D | 2702 |  | 10 | 14.58333333333334 |  | All primates |  | Intron | HEATR5B | Intron | HEATR5B |  |  |  |  |  |  |  |  | 1
chr2 | 19828889 | 19829071 | L1MB5 | LINE | 182 |  | chr2 | 19827643 | 19827808 | 165 |  | U | 1081 |  | 17 | 15.15151515151515 |  | All primates |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr2 | 11530370 | 11530488 | MSTA | LTR | 118 |  | chr2 | 11529730 | 11529829 | 99 |  | U | 541 |  | 19 | 13.13131313131313 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr20 | 57800958 | 57801053 | L1M5 | LINE | 96 |  | chr20 | 57797766 | 57797834 | 69 |  | U | 3124 |  | 27 | 5.797101449275366 |  | All primates |  | Intron | PHACTR3 | Intron | PHACTR3
chr20 | 49656526 | 49656684 | ALUJ | SINE | 159 |  | chr20 | 49653395 | 49653533 | 139 |  | U | 2993 |  | 20 | 10.79136690647482 |  | All primates |  | Intron | ATP9A | Intron | ATP9A
chr20 | 30942711 | 30942814 | ALUSX | SINE | 103 |  | chr20 | 30944099 | 30944199 | 100 |  | D | 1285 |  | 3 | 6.999999999999995 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr20 | 21499639 | 21499744 | MER5B | DNA | 105 |  | chr20 | 21498609 | 21498713 | 104 |  | U | 926 |  | 1 | 7.766990291262132 |  | All primates |  | n |  | n |  |  |  | y |  |  | y | 6/9 = 67% - accep has TFBS, donor is diverged |  | 1
chr20 | 19624312 | 19624403 | L1PB4 | LINE | 92 |  | chr20 | 19623651 | 19623724 | 74 |  | U | 588 |  | 18 | 17.56756756756756 |  | All primates |  | Intron | SLC24A3 | Intron | SLC24A3
chr20 | 17084151 | 17084319 | L1MA4A | LINE | 168 |  | chr20 | 17082035 | 17082175 | 140 |  | U | 1976 |  | 28 | 12.85714285714286 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr20 | 11923815 | 11923911 | MER67C | LTR | 96 |  | chr20 | 11925300 | 11925393 | 93 |  | D | 1389 |  | 3 | 12.22222222222222 |  | All primates |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr20 | 11773136 | 11773227 | L2 | LINE | 92 |  | chr20 | 11771614 | 11771678 | 65 |  | U | 1458 |  | 27 | 15.38461538461539 |  | All primates |  | N |  | n
chr20 | 10021082 | 10021245 | MER5A | DNA | 163 |  | chr20 | 10019171 | 10019299 | 128 |  | U | 1783 |  | 35 | 16.40625 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr20 | 9773222 | 9773335 | L1MD2 | LINE | 113 |  | chr20 | 9770012 | 9770116 | 104 |  | U | 3106 |  | 9 | 13.46153846153846 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr20 | 4301858 | 4301993 | L1MA7 | LINE | 135 |  | chr20 | 4299909 | 4300042 | 133 |  | U | 1816 |  | 2 | 8.333333333333337 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr21 | 42069796 | 42070069 | MLT1C | LTR | 273 |  | chr21 | 42068735 | 42068951 | 216 |  | U | 845 |  | 57 | 11.11111111111112 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr21 | 40928312 | 40928593 | L2 | LINE | 282 |  | chr21 | 40927179 | 40927453 | 275 |  | U | 859 |  | 7 | 11.07011070110702 |  | All primates |  | Intron | DSCAM | Intron | DSCAM
chr21 | 36122472 | 36122617 | ALUJB | SINE | 145 |  | chr21 | 36121269 | 36121396 | 127 |  | U | 1076 |  | 18 | 8.661417322834641 |  | All primates |  | n |  | n |  | y | y | y | y | y | y | 13/15 - 87% |  | 1
chr21 | 33995235 | 33995362 | ALUJB | SINE | 127 |  | chr21 | 33994728 | 33994853 | 125 |  | U | 382 |  | 2 | 5.645161290322576 |  | All primates |  | Intron | ITSN1 | Intron | ITSN1 |  |  |  |  |  |  |  |  | 1
chr21 | 29041929 | 29042158 | L1PA16 | LINE | 229 |  | chr21 | 29043901 | 29044072 | 171 |  | D | 1743 |  | 58 | 7.017543859649122 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr21 | 20957117 | 20957350 | MER61B | LTR | 233 |  | chr21 | 20956437 | 20956667 | 230 |  | U | 450 |  | 3 | 10.96491228070176 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr22 | 41650259 | 41650393 | L2 | LINE | 135 |  | chr22 | 41649080 | 41649208 | 129 |  | U | 1051 |  | 6 | 12.4031007751938 |  | All primates |  | Intron | PACSIN2 | Intron | PACSIN2
chr22 | 36389458 | 36389775 | FRAM | SINE | 318 |  | chr22 | 36386426 | 36386718 | 293 |  | U | 2740 |  | 25 | 7.508532423208192 |  | All primates |  | Intron | PDXP | Intron | PDXP
chr3 | 199021887 | 199022005 | L1MDA | LINE | 119 |  | chr3 | 199023196 | 199023297 | 102 |  | D | 1191 |  | 17 | 5.208333333333337 |  | All primates |  | Intron | LRCH3 | Intron | LRCH3
chr3 | 197684718 | 197684787 | CHARLIE4A | DNA | 70 |  | chr3 | 197683706 | 197683776 | 71 |  | U | 942 |  | -1 | 11.76470588235294 |  | All primates |  | Intron | RNF168 | 3' UTR | RNF168
chr3 | 165812591 | 165812671 | MLT1E2 | LTR | 80 |  | chr3 | 165814230 | 165814303 | 73 |  | D | 1559 |  | 7 | 10.95890410958904 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 161832432 | 161832544 | L1PA10 | LINE | 112 |  | chr3 | 161834809 | 161834921 | 112 |  | D | 2265 |  | 0 | 9.82142857142857 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 153293954 | 153294076 | L1MEC | LINE | 123 |  | chr3 | 153292143 | 153292211 | 69 |  | U | 1743 |  | 54 | 8.695652173913048 |  | All primates |  | N |  | n
chr3 | 151668034 | 151668213 | L1MC5 | LINE | 179 |  | chr3 | 151670413 | 151670578 | 165 |  | D | 2200 |  | 14 | 12.19512195121951 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 140782029 | 140782196 | L1MED | LINE | 168 |  | chr3 | 140780549 | 140780703 | 155 |  | U | 1326 |  | 13 | 4.516129032258065 |  | All primates |  | Intron | NMNAT3 | I/E | NMNAT3
chr3 | 139327210 | 139327343 | L2 | LINE | 134 |  | chr3 | 139325877 | 139325993 | 117 |  | U | 1217 |  | 17 | 12.82051282051282 |  | All primates |  | Intron | A4GNT | 3' UTR | A4GNT
chr3 | 132693764 | 132693826 | L2 | LINE | 63 |  | chr3 | 132696042 | 132696096 | 55 |  | D | 2216 |  | 8 | 14.54545454545455 |  | All primates |  | Intron | MRPL3 | Intron | MRPL3
chr3 | 125617036 | 125617237 | MER5A | DNA | 201 |  | chr3 | 125614757 | 125614929 | 172 |  | U | 2107 |  | 29 | 10.77844311377245 |  | All primates |  | Intron | KALRN | Intron | KALRN |  |  |  |  |  |  |  |  | 1
chr3 | 115282981 | 115283065 | ALUJO | SINE | 84 |  | chr3 | 115281855 | 115281932 | 77 |  | U | 1049 |  | 7 | 6.493506493506496 |  | All primates |  | Intron | QTRTD1 | Intron | QTRTD1 |  |  |  | y | y |  |  |  | 1
chr3 | 95493729 | 95493877 | MER65C | LTR | 148 |  | chr3 | 95493287 | 95493404 | 117 |  | U | 325 |  | 31 | 11.96581196581197 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 89322443 | 89322601 | MLT1B | LTR | 158 |  | chr3 | 89324912 | 89325035 | 123 |  | D | 2311 |  | 35 | 10.56910569105691 |  | All primates |  | Intron | EPHA3 | Intron | EPHA3 |  |  |  |  |  |  |  |  | 1
chr3 | 85789756 | 85789988 | MLT1C | LTR | 232 |  | chr3 | 85788553 | 85788744 | 191 |  | U | 1012 |  | 41 | 14.13612565445026 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 73298572 | 73298807 | MLT1F1 | LTR | 235 |  | chr3 | 73300617 | 73300838 | 221 |  | D | 1810 |  | 14 | 5.909090909090908 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 43318696 | 43318773 | MIRM | SINE | 78 |  | chr3 | 43317659 | 43317732 | 74 |  | U | 964 |  | 4 | 8.108108108108103 |  | All primates |  | Intron | SNRK | Intron | SNRK
chr3 | 42898979 | 42899098 | MER68 | LTR | 120 |  | chr3 | 42897287 | 42897398 | 112 |  | U | 1581 |  | 8 | 13.39285714285714 |  | All primates |  | N |  | n
chr3 | 41315847 | 41315972 | MLT1H | LTR | 125 |  | chr3 | 41315318 | 41315413 | 95 |  | U | 434 |  | 30 | 14.73684210526316 |  | All primates |  | Intron | ULK4 | Intron | ULK4 |  |  |  |  |  |  |  |  | 1
chr3 | 31392011 | 31392144 | LTR16A1 | LTR | 133 |  | chr3 | 31393052 | 31393157 | 105 |  | D | 908 |  | 28 | 14.28571428571429 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 31312254 | 31312418 | L1MB3 | LINE | 164 |  | chr3 | 31310480 | 31310635 | 155 |  | U | 1619 |  | 9 | 5.80645161290323 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 25131507 | 25131713 | KANGA1B | DNA | 207 |  | chr3 | 25129994 | 25130160 | 167 |  | U | 1347 |  | 40 | 4.294478527607359 |  | All primates |  | N |  | n
chr4 | 159930382 | 159930570 | MER46B | DNA | 189 |  | chr4 | 159929583 | 159929781 | 199 |  | U | 601 |  | -10 | 7.936507936507942 |  | All primates |  | Intron | FNIP2 | Intron | FNIP2
chr4 | 158268061 | 158268121 | MLT1D | LTR | 60 |  | chr4 | 158269398 | 158269451 | 53 |  | D | 1277 |  | 7 | 9.433962264150942 |  | All primates |  | Intron | GLRB | Intron | GLRB |  |  |  |  |  |  |  |  | 1
chr4 | 155601137 | 155601286 | MIR | SINE | 149 |  | chr4 | 155601648 | 155601771 | 123 |  | D | 362 |  | 26 | 14.63414634146342 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 149004252 | 149004419 | L1MB3 | LINE | 167 |  | chr4 | 149003465 | 149003585 | 120 |  | U | 667 |  | 47 | 14.16666666666667 |  | All primates |  | Intron | ARHGAP10 | Intron | ARHGAP10 |  |  |  |  |  |  |  |  | 2 | chr6:63,016,194-63,016,213 | Diff chr
chr4 | 140791687 | 140791761 | MLT1B | LTR | 74 |  | chr4 | 140792262 | 140792322 | 60 |  | D | 501 |  | 14 | 6.666666666666665 |  | All primates |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr4 | 132095013 | 132095178 | L1PA16 | LINE | 165 |  | chr4 | 132093886 | 132094037 | 151 |  | U | 976 |  | 14 | 10.59602649006622 |  | All primates |  | n |  | n |  | y | y | y | y | y | y | 1 |  | 1
chr4 | 128491042 | 128491180 | L1PA14 | LINE | 139 |  | chr4 | 128489591 | 128489707 | 117 |  | U | 1335 |  | 22 | 4.273504273504269 |  | All primates |  | N |  | n
chr4 | 121572094 | 121572214 | L1MB2 | LINE | 120 |  | chr4 | 121573610 | 121573706 | 96 |  | D | 1396 |  | 24 | 10.41666666666666 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 120275591 | 120275695 | L2 | LINE | 105 |  | chr4 | 120273545 | 120273620 | 76 |  | U | 1971 |  | 29 | 1.369863013698636 |  | All primates |  | N |  | n
chr4 | 117592996 | 117593084 | ALUSX | SINE | 88 |  | chr4 | 117595003 | 117595091 | 88 |  | D | 1919 |  | 0 | 6.818181818181824 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 116279250 | 116279426 | L2 | LINE | 177 |  | chr4 | 116281717 | 116281894 | 178 |  | D | 2291 |  | -1 | 9.826589595375722 |  | All primates |  | N |  | n
chr4 | 111014583 | 111014684 | TIGGER7 | DNA | 102 |  | chr4 | 111015609 | 111015667 | 59 |  | D | 925 |  | 43 | 10.16949152542372 |  | All primates |  | N |  | n
chr4 | 97840566 | 97840687 | [NAME] | LINE | 122 |  | chr4 | 97838878 | 97838974 | 97 |  | U | 1592 |  | 25 | 8.247422680412376 |  | All primates |  | N |  | n
chr4 | 79224544 | 79224623 | MER44A | DNA | 80 |  | chr4 | 79225563 | 79225640 | 78 |  | D | 940 |  | 2 | 2.564102564102566 |  | All primates |  | Intron | FRAS1 | Intron | FRAS1
chr4 | 71270256 | 71270600 | L2 | LINE | 345 |  | chr4 | 71272291 | 71272648 | 358 |  | D | 1691 |  | -13 | 13.52941176470588 |  | All primates |  | N |  | n
chr4 | 41026886 | 41027131 | ALUJO | SINE | 245 |  | chr4 | 41025837 | 41026057 | 220 |  | U | 829 |  | 25 | 6.392694063926941 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 40064719 | 40064906 | MLT1C | LTR | 187 |  | chr4 | 40065902 | 40066085 | 183 |  | D | 996 |  | 4 | 12.63736263736264 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 40026851 | 40026982 | MLT1B | LTR | 131 |  | chr4 | 40027651 | 40027742 | 91 |  | D | 669 |  | 40 | 14.28571428571429 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 38572982 | 38573219 | MLT1E1 | LTR | 237 |  | chr4 | 38574629 | 38574753 | 124 |  | D | 1410 |  | 113 | 7.258064516129037 |  | All primates |  | Intron | FAM114A1 | Intron | FAM114A1 |  |  |  |  |  |  |  |  | 1
chr4 | 38498369 | 38498617 | MLT1C | LTR | 248 |  | chr4 | 38496325 | 38496571 | 246 |  | U | 1798 |  | 2 | 8.943089430894313 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 34979304 | 34979434 | MER54B | LTR | 130 |  | chr4 | 34978535 | 34978620 | 85 |  | U | 684 |  | 45 | 10.58823529411764 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chr7:83,407,476-83,407,497 | Diff chr
chr4 | 15733371 | 15733486 | LTR77 | LTR | 115 |  | chr4 | 15732598 | 15732696 | 98 |  | U | 675 |  | 17 | 15.30612244897959 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 15504445 | 15504550 | [NAME] | LINE | 105 |  | chr4 | 15502862 | 15502938 | 76 |  | U | 1507 |  | 29 | 9.210526315789469 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 177492085 | 177492203 | ALUJB | SINE | 118 |  | chr5 | 177494614 | 177494708 | 94 |  | D | 2411 |  | 24 | 5.376344086021501 |  | All primates |  | Intron | RMND5B | Intron | RMND5B |  |  |  |  |  |  |  |  | 1
chr5 | 169017145 | 169017461 | HAL1B | LINE | 316 |  | chr5 | 169019402 | 169019708 | 306 |  | D | 1941 |  | 10 | 11.48648648648649 |  | All primates |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr5 | 147061288 | 147061447 | MLT1A0 | LTR | 159 |  | chr5 | 147059642 | 147059792 | 150 |  | U | 1496 |  | 9 | 7.432432432432434 |  | All primates |  | Intron | JAKMIP2 | Intron | JAKMIP2 |  |  |  |  |  |  |  |  | 1
chr5 | 140857972 | 140858067 | L2 | LINE | 96 |  | chr5 | 140858290 | 140858381 | 92 |  | D | 223 |  | 4 | 7.608695652173914 |  | All primates |  | Intron | PCDHG | Intron | PCDHG
chr5 | 127974740 | 127974835 | L1ME2 | LINE | 95 |  | chr5 | 127976388 | 127976465 | 77 |  | D | 1553 |  | 18 | 12.98701298701299 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 114622452 | 114622678 | MER5A1 | DNA | 226 |  | chr5 | 114625752 | 114625968 | 216 |  | D | 3074 |  | 10 | 7.441860465116279 |  | All primates |  | Intron | PGGT1B | Intron | PGGT1B |  |  |  |  |  |  |  |  | 1
chr5 | 110028493 | 110028626 | MLT1A | LTR | 134 |  | chr5 | 110029742 | 110029865 | 124 |  | D | 1116 |  | 10 | 16.39344262295081 |  | All primates |  | Intron | FLJ43080 | Intron | FLJ43080
chr5 | 104264391 | 104264487 | L1M4B | LINE | 96 |  | chr5 | 104262798 | 104262892 | 94 |  | U | 1499 |  | 2 | 11.82795698924731 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 96443186 | 96443265 | MER34 | LTR | 79 |  | chr5 | 96445638 | 96445712 | 74 |  | D | 2373 |  | 5 | 9.589041095890416 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 95990431 | 95990542 | MSTD | LTR | 111 |  | chr5 | 95990873 | 95990976 | 103 |  | D | 331 |  | 8 | 5.825242718446599 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 88257662 | 88257802 | TIGGER3B | DNA | 140 |  | chr5 | 88256068 | 88256196 | 128 |  | U | 1466 |  | 12 | 5.511811023622048 |  | All primates |  | n |  | n |  | y | y | y | y | y | y | 12/13 = 92% |  | 1
chr5 | 64095411 | 64095678 | MER30 | DNA | 267 |  | chr5 | 64097165 | 64097433 | 268 |  | D | 1487 |  | -1 | 5.791505791505791 |  | All primates |  | Intron | P18SRP | Intron | P18SRP | y | y |  | y | y |  |  |  | 1
chr5 | 22831649 | 22831818 | L1MA6 | LINE | 169 |  | chr5 | 22833951 | 22834117 | 166 |  | D | 2133 |  | 3 | 12.04819277108434 |  | All primates |  | Intron | CDH12 | Intron | CDH12 |  |  |  |  |  |  |  |  | 1
chr5 | 2241817 | 2242235 | L1ME1 | LINE | 418 |  | chr5 | 2240654 | 2241070 | 416 |  | U | 747 |  | 2 | 8.415841584158413 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 2067345 | 2067508 | MLT1C | LTR | 164 |  | chr5 | 2069746 | 2069877 | 132 |  | D | 2238 |  | 32 | 13.63636363636363 |  | All primates |  | N |  | n
chr6 | 164624689 | 164624871 | L2 | LINE | 183 |  | chr6 | 164627414 | 164627565 | 152 |  | D | 2543 |  | 31 | 12.58278145695364 |  | All primates |  | N |  | n
chr6 | 164401202 | 164401400 | L1ME3B | LINE | 199 |  | chr6 | 164400369 | 164400560 | 192 |  | U | 642 |  | 7 | 11.17021276595744 |  | All primates |  | N |  | n
chr6 | 160390575 | 160390707 | MIRB | SINE | 132 |  | chr6 | 160387122 | 160387204 | 82 |  | U | 3371 |  | 50 | 8.536585365853655 |  | All primates |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr6 | 155986999 | 155987178 | MER4C | LTR | 179 |  | chr6 | 155984230 | 155984407 | 177 |  | U | 2592 |  | 2 | 8.52272727272727 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 145596643 | 145596776 | MLT1C | LTR | 133 |  | chr6 | 145595689 | 145595777 | 88 |  | U | 866 |  | 45 | 12.5 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chr7:118,695,188-118,695,221 | Diff chr
chr6 | 135424573 | 135424694 | L1MB7 | LINE | 121 |  | chr6 | 135428499 | 135428596 | 97 |  | D | 3805 |  | 24 | 9.278350515463918 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 119562953 | 119563103 | CHARLIE1A | DNA | 150 |  | chr6 | 119560194 | 119560307 | 113 |  | U | 2646 |  | 37 | 7.079646017699115 |  | All primates |  | Intron | MAN1A1 | Intron | MAN1A1 |  |  |  |  |  |  |  |  | 1
chr6 | 112365548 | 112365661 | ALUJO | SINE | 113 |  | chr6 | 112364179 | 112364285 | 106 |  | U | 1263 |  | 7 | 7.547169811320753 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 110244485 | 110244568 | L1MC3 | LINE | 83 |  | chr6 | 110245090 | 110245164 | 74 |  | D | 522 |  | 9 | 9.459459459459463 |  | All primates |  | Intron | FIG4 | Intron | FIG4 |  |  |  |  |  |  |  |  | 1
chr6 | 106910828 | 106910948 | L2 | LINE | 121 |  | chr6 | 106912617 | 106912687 | 71 |  | D | 1669 |  | 50 | 11.26760563380281 |  | All primates |  | N |  | n
chr6 | 105948280 | 105948457 | MER33 | DNA | 177 |  | chr6 | 105947771 | 105947956 | 185 |  | U | 324 |  | -8 | 10.85714285714285 |  | All primates |  | Intron | PREP | Intron | PREP |  |  |  |  |  |  |  |  | 1
chr6 | 102584399 | 102584491 | L1MA9 | LINE | 92 |  | chr6 | 102583616 | 102583694 | 78 |  | U | 705 |  | 14 | 10.25641025641025 |  | All primates |  | Intron | GRIK2 | Intron | GRIK2 |  |  |  |  |  |  |  |  | 1
chr6 | 101359689 | 101359794 | L1PA17 | LINE | 106 |  | chr6 | 101360815 | 101360917 | 103 |  | D | 1021 |  | 3 | 10.78431372549019 |  | All primates |  | Intron | ASCC3 | Intron | ASCC3
chr6 | 88809256 | 88809360 | L1ME1 | LINE | 104 |  | chr6 | 88811345 | 88811423 | 78 |  | D | 1985 |  | 26 | 15.58441558441559 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 83546787 | 83546899 | MSTD-INT | LTR | 113 |  | chr6 | 83545456 | 83545563 | 108 |  | U | 1224 |  | 5 | 3.960396039603964 |  | All primates |  | N |  | n
chr6 | 73068012 | 73068069 | MER2 | DNA | 57 |  | chr6 | 73069694 | 73069737 | 43 |  | D | 1625 |  | 14 | 13.95348837209303 |  | All primates |  | Intron | RIMS1 | Intron | RIMS1 |  |  |  |  |  |  |  |  | 1
chr6 | 51237931 | 51238052 | MLT1C | LTR | 121 |  | chr6 | 51239111 | 51239204 | 93 |  | D | 1059 |  | 28 | 16.30434782608695 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 48039424 | 48039747 | L1MB1 | LINE | 323 |  | chr6 | 48040374 | 48040653 | 279 |  | D | 627 |  | 44 | 8.24372759856631 |  | All primates |  | Intron | C6orf138 | Intron | C6orf138 |  |  |  |  |  |  |  |  | 1
chr6 | 47149812 | 47150023 | L2 | LINE | 212 |  | chr6 | 47152023 | 47152236 | 214 |  | D | 2000 |  | -2 | 7.843137254901967 |  | All primates |  | N |  | n
chr6 | 40273445 | 40273518 | LTR16C | LTR | 73 |  | chr6 | 40272396 | 40272462 | 66 |  | U | 983 |  | 7 | 15.15151515151515 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 27928131 | 27928312 | CHARLIE1 | DNA | 181 |  | chr6 | 27927448 | 27927625 | 177 |  | U | 506 |  | 4 | 11.93181818181818 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 17036918 | 17036987 | [NAME] | LINE | 69 |  | chr6 | 17040653 | 17040703 | 50 |  | D | 3666 |  | 19 | 6.000000000000005 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 4296233 | 4296358 | L1MB3 | LINE | 125 |  | chr6 | 4294792 | 4294888 | 96 |  | U | 1345 |  | 29 | 12.63157894736842 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 153222098 | 153222189 | MER65C | LTR | 91 |  | chr7 | 153219721 | 153219794 | 73 |  | U | 2304 |  | 18 | 8.21917808219178 |  | All primates |  | Intron | DPP6 | Intron | DPP6 |  |  |  |  |  |  |  |  | 1
chr7 | 144102977 | 144103302 | L2 | LINE | 326 |  | chr7 | 144104551 | 144104811 | 261 |  | D | 1249 |  | 65 | 10.11673151750973 |  | All primates |  | Intron | TPK1 | Intron | TPK1
chr7 | 132163198 | 132163298 | L1ME3 | LINE | 100 |  | chr7 | 132165170 | 132165258 | 88 |  | D | 1872 |  | 12 | 4.597701149425292 |  | All primates |  | Intron | CHCHD3 | Intron | CHCHD3 |  |  |  |  |  |  |  |  | 1
chr7 | 125779447 | 125779596 | MLT1A0 | LTR | 149 |  | chr7 | 125776502 | 125776600 | 98 |  | U | 2847 |  | 51 | 7.14285714285714 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 113436371 | 113436475 | MLT1H1 | LTR | 104 |  | chr7 | 113435303 | 113435407 | 104 |  | U | 964 |  | 0 | 12.62135922330098 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 108657395 | 108657507 | MER50 | LTR | 112 |  | chr7 | 108658342 | 108658445 | 103 |  | D | 835 |  | 9 | 10.67961165048543 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 99489298 | 99489460 | ALUSX | SINE | 162 |  | chr7 | 99492444 | 99492595 | 151 |  | D | 2984 |  | 11 | 9.27152317880795 |  | All primates |  | Intron | ZSCAN21 | I/E | ZSCAN21 | y | y |  | y | y |  |  |  | 1
chr7 | 86473330 | 86473424 | L1MC4 | LINE | 94 |  | chr7 | 86472304 | 86472379 | 75 |  | U | 951 |  | 19 | 14.66666666666666 |  | All primates |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr7 | 84176528 | 84176813 | MER3 | DNA | 285 |  | chr7 | 84175523 | 84175760 | 237 |  | U | 768 |  | 48 | 9.322033898305083 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 80495180 | 80495324 | [NAME] | LINE | 145 |  | chr7 | 80493612 | 80493729 | 118 |  | U | 1451 |  | 27 | 8.47457627118644 |  | All primates |  | N |  | n
chr7 | 80339191 | 80339328 | CHARLIE1B | DNA | 137 |  | chr7 | 80338547 | 80338643 | 96 |  | U | 548 |  | 41 | 7.291666666666663 |  | All primates |  | Intron | SEMA3C | Intron | SEMA3C |  |  |  |  |  |  |  |  | 1
chr7 | 67818595 | 67818768 | ALUJO | SINE | 173 |  | chr7 | 67819345 | 67819495 | 150 |  | D | 577 |  | 23 | 12 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 52016130 | 52016213 | L1MD | LINE | 84 |  | chr7 | 52018417 | 52018489 | 73 |  | D | 2204 |  | 11 | 12.32876712328768 |  | All primates |  | N |  | n
chr7 | 39588199 | 39588290 | ALUJO | SINE | 91 |  | chr7 | 39586533 | 39586594 | 61 |  | U | 1605 |  | 30 | 6.557377049180324 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 38227428 | 38227599 | MIR | SINE | 171 |  | chr7 | 38225877 | 38226042 | 165 |  | U | 1386 |  | 6 | 14.63414634146342 |  | All primates |  | Intron | STARD3NL | Intron | STARD3NL |  |  |  |  |  |  |  |  | 1
chr7 | 27759813 | 27759906 | MER44A | DNA | 93 |  | chr7 | 27759031 | 27759084 | 53 |  | U | 729 |  | 40 | 3.773584905660377 |  | All primates |  | Intron | TAX1BP1 | Intron | TAX1BP1 |  |  |  |  |  |  |  |  | 1
chr7 | 23731858 | 23732011 | [NAME] | LTR | 153 |  | chr7 | 23732970 | 23733118 | 148 |  | D | 959 |  | 5 | 10.3448275862069 |  | All primates |  | Intron | STK31 | Intron | STK31 |  |  |  |  |  |  |  |  | 1
chr7 | 18980314 | 18980414 | L2 | LINE | 101 |  | chr7 | 18984974 | 18985059 | 86 |  | D | 4560 |  | 15 | 3.488372093023251 |  | All primates |  | Intron | HDAC9 | Intron | HDAC9
chr7 | 8699470 | 8699537 | MIRB | SINE | 67 |  | chr7 | 8698947 | 8698985 | 38 |  | U | 485 |  | 29 | 5.263157894736848 |  | All primates |  | Intron | NXPH1 | Intron | NXPH1 |  |  |  |  |  |  |  |  | 1
chr7 | 1597422 | 1597658 | [NAME] | LTR | 236 |  | chr7 | 1598688 | 1598925 | 237 |  | D | 1030 |  | -1 | 9.913793103448276 |  | All primates |  | n |  | n |  |  |  | y | y |  | y | 11/12 = 92% |  | 1
chr8 | 137180244 | 137180434 | MLT1C | LTR | 190 |  | chr8 | 137177118 | 137177283 | 165 |  | U | 2961 |  | 25 | 13.93939393939394 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 135517814 | 135518020 | MSTC | LTR | 206 |  | chr8 | 135516261 | 135516471 | 210 |  | U | 1343 |  | -4 | 10.73170731707317 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 134589510 | 134589768 | LTR16A1 | LTR | 258 |  | chr8 | 134588455 | 134588643 | 188 |  | U | 867 |  | 70 | 8.510638297872342 |  | All primates |  | Intron | ST3GAL1 | Intron | ST3GAL1 |  |  |  |  |  |  |  |  | 1
chr8 | 129573752 | 129573952 | MLT1D | LTR | 200 |  | chr8 | 129574772 | 129574951 | 179 |  | D | 820 |  | 21 | 10.1123595505618 |  | All primates |  | n |  | n |  | y |  |  | y | y |  |  |  | 1
chr8 | 124332360 | 124332463 | MSTA | LTR | 103 |  | chr8 | 124331115 | 124331215 | 100 |  | U | 1145 |  | 3 | 6.000000000000005 |  | All primates |  | Intron | ZHX1 | 3' UTR | ZHX1 |  |  |  | y | y |  |  |  | 1
chr8 | 117057032 | 117057104 | MSTD | LTR | 72 |  | chr8 | 117058549 | 117058620 | 71 |  | D | 1445 |  | 1 | 16.90140845070422 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 99064291 | 99064371 | L1MB3 | LINE | 80 |  | chr8 | 99063079 | 99063157 | 78 |  | U | 1134 |  | 2 | 8.974358974358976 |  | All primates |  | Intron | MATN2 | Intron | MATN2 |  |  |  |  |  |  |  |  | 1
chr8 | 97936286 | 97936433 | [NAME] | LTR | 147 |  | chr8 | 97934540 | 97934687 | 147 |  | U | 1599 |  | 0 | 9.589041095890416 |  | All primates |  | Intron | PGCP | Intron | PGCP |  |  |  | y | y |  |  |  | 1
chr8 | 97401088 | 97401187 | L3 | LINE | 99 |  | chr8 | 97399945 | 97400043 | 98 |  | U | 1045 |  | 1 | 9.183673469387754 |  | All primates |  | Intron | PTDSS1 | Intron | PTDSS1 |  |  |  |  |  |  |  |  | 1
chr8 | 96365749 | 96365960 | [NAME] | LINE | 211 |  | chr8 | 96366281 | 96366485 | 204 |  | D | 321 |  | 7 | 6.930693069306926 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 82255701 | 82255941 | MLT1F | LTR | 240 |  | chr8 | 82256708 | 82256910 | 202 |  | D | 767 |  | 38 | 7.920792079207917 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 75501138 | 75501211 | L1MD3 | LINE | 73 |  | chr8 | 75500426 | 75500490 | 64 |  | U | 648 |  | 9 | 10.9375 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 70530112 | 70530241 | ALUJO | SINE | 129 |  | chr8 | 70529359 | 70529475 | 116 |  | U | 637 |  | 13 | 13.79310344827587 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 61688540 | 61688651 | MIR | SINE | 111 |  | chr8 | 61687630 | 61687706 | 76 |  | U | 834 |  | 35 | 6.666666666666665 |  | All primates |  | Intron | RAB2A | Intron | RAB2A |  |  |  |  |  |  |  |  | 1
chr8 | 61412684 | 61412740 | MER82 | DNA | 56 |  | chr8 | 61413420 | 61413475 | 55 |  | D | 680 |  | 1 | 5.454545454545457 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 59242097 | 59242275 | L1MC4 | LINE | 178 |  | chr8 | 59240617 | 59240784 | 167 |  | U | 1313 |  | 11 | 5.988023952095811 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 37353387 | 37353479 | MLT1C | LTR | 92 |  | chr8 | 37354220 | 37354296 | 76 |  | D | 741 |  | 16 | 11.8421052631579 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 35837778 | 35837864 | ALUJO | SINE | 86 |  | chr8 | 35838610 | 35838689 | 79 |  | D | 746 |  | 7 | 7.594936708860756 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 33022110 | 33022330 | L1MD1 | LINE | 220 |  | chr8 | 33020882 | 33021083 | 201 |  | U | 1027 |  | 19 | 8.955223880597018 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 30884283 | 30884397 | ALUJO | SINE | 114 |  | chr8 | 30882336 | 30882417 | 81 |  | U | 1866 |  | 33 | 9.876543209876543 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 22725645 | 22725759 | MIRB | SINE | 115 |  | chr8 | 22726443 | 22726557 | 115 |  | D | 684 |  | 0 | 1.73913043478261 |  | All primates |  | Intron | PEBP4 | Intron | PEBP4
chr8 | 16449422 | 16449608 | MLT2F | LTR | 186 |  | chr8 | 16450073 | 16450205 | 132 |  | D | 465 |  | 54 | 12.12121212121212 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 9780999 | 9781251 | L1MB3 | LINE | 252 |  | chr8 | 9782076 | 9782314 | 238 |  | D | 825 |  | 14 | 13.86554621848739 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 9377492 | 9377629 | [NAME] | LINE | 138 |  | chr8 | 9380451 | 9380557 | 107 |  | D | 2822 |  | 31 | 5.607476635514019 |  | All primates |  | N |  | n
chr8 | 5883665 | 5883945 | MLT1D | LTR | 280 |  | chr8 | 5881706 | 5881976 | 270 |  | U | 1689 |  | 10 | 11.89591078066915 |  | All primates |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr8 | 3037363 | 3037601 | MER46B | DNA | 239 |  | chr8 | 3034629 | 3034821 | 193 |  | U | 2542 |  | 46 | 14.13612565445026 |  | All primates |  | Intron | CSMD1 | Intron | CSMD1
chr9 | 131970565 | 131970851 | L2 | LINE | 287 |  | chr9 | 131972966 | 131973202 | 237 |  | D | 2115 |  | 50 | 3.813559322033899 |  | All primates |  | N |  | n
chr9 | 121659075 | 121659153 | L1M5 | LINE | 79 |  | chr9 | 121657900 | 121657972 | 73 |  | U | 1103 |  | 6 | 15.06849315068494 |  | All primates |  | N |  | n
chr9 | 116533841 | 116534070 | L2 | LINE | 230 |  | chr9 | 116535071 | 116535291 | 221 |  | D | 1001 |  | 9 | 11.05990783410138 |  | All primates |  | N |  | n
chr9 | 116061560 | 116061683 | MIR | SINE | 123 |  | chr9 | 116064022 | 116064137 | 115 |  | D | 2339 |  | 8 | 7.826086956521738 |  | All primates |  | Intron | COL27A1 | Intron | COL27A1 |  |  |  |  |  |  |  |  | 1
chr9 | 99735543 | 99735748 | MIR | SINE | 205 |  | chr9 | 99733640 | 99733835 | 195 |  | U | 1708 |  | 10 | 7.8125 |  | All primates |  | Intron | HEMGN | Intron | HEMGN |  |  |  |  |  |  |  |  | 1
chr9 | 95837095 | 95837297 | L1MA7 | LINE | 202 |  | chr9 | 95839202 | 95839405 | 203 |  | D | 1905 |  | -1 | 3.589743589743588 |  | All primates |  | Intron | PTPDC1 | Intron | PTPDC1 |  |  |  |  |  |  |  |  | 1
chr9 | 94391547 | 94391700 | L1M5 | LINE | 154 |  | chr9 | 94393542 | 94393650 | 109 |  | D | 1842 |  | 45 | 6.422018348623848 |  | All primates |  | Intron | CENPP | Intron | CENPP
chr9 | 90823935 | 90824142 | L1MC | LINE | 208 |  | chr9 | 90824760 | 90824945 | 186 |  | D | 618 |  | 22 | 14.13043478260869 |  | All primates |  | Intron | SHC3 | Intron | SHC3
chr9 | 83646738 | 83646885 | MIR | SINE | 147 |  | chr9 | 83644989 | 83645095 | 106 |  | U | 1643 |  | 41 | 5.660377358490565 |  | All primates |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr9 | 81638593 | 81638938 | [NAME] | LTR | 346 |  | chr9 | 81634775 | 81635072 | 298 |  | U | 3521 |  | 48 | 7.770270270270274 |  | All primates |  | N |  | n
chr9 | 81206455 | 81206524 | MLT1J | LTR | 69 |  | chr9 | 81206968 | 81207009 | 41 |  | D | 444 |  | 28 | 7.317073170731703 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 80933394 | 80933472 | MIR | SINE | 78 |  | chr9 | 80934222 | 80934282 | 60 |  | D | 750 |  | 18 | 10 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 74013508 | 74013746 | HAL1 | LINE | 238 |  | chr9 | 74015566 | 74015791 | 225 |  | D | 1820 |  | 13 | 9.333333333333337 |  | All primates |  | Intron | GDA | Intron | GDA |  |  |  |  |  |  |  |  | 1
chr9 | 73440418 | 73440773 | L1MC1 | LINE | 355 |  | chr9 | 73441140 | 73441382 | 242 |  | D | 367 |  | 113 | 10.33057851239669 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 71266277 | 71266350 | MIR | SINE | 73 |  | chr9 | 71265978 | 71266036 | 58 |  | U | 241 |  | 15 | 5.263157894736848 |  | All primates |  | Intron | APBA1 | Intron | APBA1 |  |  |  |  |  |  |  |  | 1
chr9 | 35416187 | 35416359 | MIR | SINE | 172 |  | chr9 | 35417080 | 35417248 | 168 |  | D | 721 |  | 4 | 7.272727272727275 |  | All primates |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr9 | 31450351 | 31450561 | L1MCA | LINE | 211 |  | chr9 | 31448654 | 31448809 | 156 |  | U | 1542 |  | 55 | 9.868421052631582 |  | All primates |  | N |  | n
chr9 | 23660715 | 23660836 | [NAME] | DNA | 121 |  | chr9 | 23662792 | 23662900 | 108 |  | D | 1956 |  | 13 | 5.555555555555558 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 23330742 | 23330880 | MLT1A1 | LTR | 138 |  | chr9 | 23332242 | 23332371 | 129 |  | D | 1362 |  | 9 | 1.5625 |  | All primates |  | n |  | n |  | y | y | y | y | y | y | 1 |  | 1
chr9 | 13215310 | 13215420 | TIGGER3(GOLEM) | DNA | 110 |  | chr9 | 13217138 | 13217240 | 102 |  | D | 1718 |  | 8 | 6.999999999999995 |  | All primates |  | Intron | MPDZ | Intron | MPDZ |  |  |  |  |  |  |  |  | 1
chr9 | 7754633 | 7754801 | TIGGER1 | DNA | 168 |  | chr9 | 7757028 | 7757133 | 105 |  | D | 2227 |  | 63 | 9.523809523809524 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 5474814 | 5474895 | TIGGER7 | DNA | 81 |  | chr9 | 5472793 | 5472855 | 62 |  | U | 1959 |  | 19 | 9.677419354838712 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 2129445 | 2129659 | LTR8A | LTR | 214 |  | chr9 | 2130353 | 2130543 | 190 |  | D | 694 |  | 24 | 10.05291005291006 |  | All primates |  | Intron | SMARCA2 | Intron | SMARCA2 |  |  |  |  |  |  |  |  | 1
chrX | 135050242 | 135050351 | CHARLIE2 | DNA | 109 |  | chrX | 135050589 | 135050650 | 61 |  | D | 238 |  | 48 | 5 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 128676779 | 128676837 | [NAME] | DNA | 58 |  | chrX | 128679709 | 128679753 | 44 |  | D | 2872 |  | 14 | 6.818181818181824 |  | All primates |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chrX | 119844806 | 119844872 | L1PA13 | LINE | 66 |  | chrX | 119844447 | 119844509 | 62 |  | U | 297 |  | 4 | 6.451612903225811 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 108412765 | 108412924 | L1MB8 | LINE | 159 |  | chrX | 108413918 | 108414064 | 146 |  | D | 994 |  | 13 | 7.534246575342463 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 103633258 | 103633368 | MER5A | DNA | 110 |  | chrX | 103634743 | 103634800 | 57 |  | D | 1375 |  | 53 | 7.14285714285714 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 84260847 | 84261012 | MIRB | SINE | 165 |  | chrX | 84259959 | 84260060 | 101 |  | U | 787 |  | 64 | 1.980198019801982 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 74218054 | 74218445 | L1MDA | LINE | 392 |  | chrX | 74213947 | 74214322 | 376 |  | U | 3732 |  | 16 | 9.840425531914898 |  | All primates |  | Intron | ABCB7 | Intron | ABCB7
chrX | 71218919 | 71219029 | MIRB | SINE | 110 |  | chrX | 71217265 | 71217375 | 110 |  | U | 1544 |  | 0 | 5.504587155963304 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 49817800 | 49818010 | MIR | SINE | 210 |  | chrX | 49816836 | 49817041 | 205 |  | U | 759 |  | 5 | 9.35960591133005 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 45881321 | 45881478 | L2 | LINE | 158 |  | chrX | 45879770 | 45879911 | 142 |  | U | 1410 |  | 16 | 5.633802816901412 |  | All primates |  | N |  | n
chrX | 35825098 | 35825182 | [NAME] | SINE | 84 |  | chrX | 35826144 | 35826209 | 65 |  | D | 962 |  | 19 | 3.076923076923077 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 34721009 | 34721172 | L1PA15 | LINE | 163 |  | chrX | 34721884 | 34722011 | 127 |  | D | 712 |  | 36 | 13.38582677165354 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 32773884 | 32774074 | MIR | SINE | 190 |  | chrX | 32772665 | 32772819 | 154 |  | U | 1065 |  | 36 | 7.792207792207795 |  | All primates |  | Intron | DMD | Intron | DMD |  |  |  | y | y |  |  |  | 1
chrX | 31264428 | 31264578 | MER20 | DNA | 150 |  | chrX | 31265593 | 31265739 | 146 |  | D | 1015 |  | 4 | 6.164383561643838 |  | All primates |  | Intron | DMD | Intron | DMD |  |  |  | y | y |  |  |  | 1
chrX | 29517998 | 29518081 | MSTA | LTR | 83 |  | chrX | 29516828 | 29516908 | 80 |  | U | 1090 |  | 3 | 6.25 |  | All primates |  | Intron | IL1RAPL1 | Intron | IL1RAPL1 |  |  |  |  |  |  |  |  | 1
chrX | 21376673 | 21376745 | MADE1 | DNA | 72 |  | chrX | 21375413 | 21375458 | 45 |  | U | 1215 |  | 27 | 6.666666666666665 |  | All primates |  | Intron | CNKSR2 | Intron | CNKSR2 |  |  |  | y | y |  |  |  | 2 | chr19:39,763,431-39,763,452 | Diff chr
chrX | 17706455 | 17706641 | ALUJB | SINE | 186 |  | chrX | 17707511 | 17707654 | 143 |  | D | 870 |  | 43 | 11.18881118881119 |  | All primates |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 12192214 | 12192336 | L2 | LINE | 123 |  | chrX | 12192984 | 12193064 | 81 |  | D | 648 |  | 42 | 12.34567901234568 |  | All primates |  | Intron | FRMPD4 | Intron | FRMPD4
chr14 | 94156401 | 94156482 | L2 | LINE | 82 |  | chr14 | 94155426 | 94155507 | 82 |  | U | 894 |  | 0 | 0 |  | HC |  | Intron | SERPINA3 | Exon | SERPINA3
chr14 | 94070644 | 94070854 | L2 | LINE | 211 |  | chr14 | 94072425 | 94072553 | 129 |  | D | 1571 |  | 82 | 0.7751937984496138 |  | HC |  | N |  | n
chr1 | 229796899 | 229797083 | L1MB7 | LINE | 184 |  | chr1 | 229798593 | 229798763 | 170 |  | D | 1510 |  | 14 | 2.352941176470591 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 184405953 | 184406080 | L1P3 | LINE | 128 |  | chr1 | 184406846 | 184406950 | 105 |  | D | 766 |  | 23 | 0.952380952380949 |  | HC |  | Intron | HMCN1 | Intron | HMCN1
chr1 | 105701332 | 105701609 | L1ME3B | LINE | 278 |  | chr1 | 105704596 | 105704827 | 232 |  | D | 2987 |  | 46 | 3.017241379310343 |  | HC |  | n |  | N
chr1 | 66437843 | 66438077 | L1PA4 | LINE | 235 |  | chr1 | 66435375 | 66435581 | 207 |  | U | 2262 |  | 28 | 1.449275362318836 |  | HC |  | Intron | PDE4B | Intron | PDE4B | y | y
chr1 | 4809246 | 4809346 | MLT1E1 | LTR | 100 |  | chr1 | 4812573 | 4812663 | 90 |  | D | 3227 |  | 10 | 2.222222222222225 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 79325611 | 79325766 | ALUSX | SINE | 155 |  | chr10 | 79325096 | 79325250 | 154 |  | U | 361 |  | 1 | 1.948051948051943 |  | HC |  | Intron | DLG5 | Intron | DLG5 |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 7 bp 5'/3 bp 3' | n | 7 bp 3'
chr12 | 213519 | 213618 | MER41B | LTR | 99 |  | chr12 | 212571 | 212668 | 97 |  | U | 851 |  | 2 | 4.123711340206182 |  | HC |  | Intron | SLC6A13 | Intron | SLC6A13 |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 3' | n | 2 bp 3'
chr14 | 87413740 | 87413941 | ALUJB | SINE | 201 |  | chr14 | 87413393 | 87413589 | 196 |  | U | 151 |  | 5 | 3.076923076923077 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 7 bp 3' | 6 bp 5' | 2 bp 3'
chr14 | 78895878 | 78896412 | ALUSX | SINE | 534 |  | chr14 | 78894916 | 78895447 | 531 |  | U | 431 |  | 3 | 1.506591337099816 |  | HC |  | Intron | NRXN3 | Intron | NRXN3 | y | y |  | y | y |  |  |  | 1
chr15 | 92637722 | 92637902 | L1MD2 | LINE | 181 |  | chr15 | 92642674 | 92642782 | 109 |  | D | 4772 |  | 72 | 2.752293577981646 |  | HC |  | N |  | 5' UTR | MCTP2
chr16 | 57787578 | 57787730 | L1ME3 | LINE | 152 |  | chr16 | 57788533 | 57788686 | 153 |  | D | 803 |  | -1 | 2.631578947368418 |  | HC |  | n |  | n |  |  |  |  | y | y |  |  |  | 1 |  |  | n | n | 1 bp 3' | 4 bp 5' | 3 bp 3'
chr16 | 30416859 | 30416932 | ALUSX | SINE | 73 |  | chr16 | 30415027 | 30415098 | 71 |  | U | 1761 |  | 2 | 2.8169014084507 |  | HC |  | Intron | ITGAL | Exon | ITGAL | y | y |  | y | y |  |  |  | 1
chr16 | 27304337 | 27304412 | [NAME] | SINE | 75 |  | chr16 | 27307116 | 27307175 | 59 |  | D | 2704 |  | 16 | 3.389830508474578 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | 10 bp | n | 7 bp 3' | 11 bp 3'
chr18 | 46082474 | 46082986 | MER54A | LTR | 512 |  | chr18 | 46078485 | 46079000 | 515 |  | U | 3474 |  | -3 | 2.1484375 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 6 bp 5'/4 bp 3' | n | n
chr18 | 39508661 | 39508823 | L1MDA | LINE | 163 |  | chr18 | 39507824 | 39507977 | 154 |  | U | 684 |  | 9 | 2.597402597402598 |  | HC |  | N |  | n
chr18 | 21738759 | 21739008 | [NAME] | DNA | 250 |  | chr18 | 21738029 | 21738264 | 236 |  | U | 495 |  | 14 | 2.118644067796616 |  | HC |  | N |  | n
chr2 | 183099850 | 183099924 | L1MED | LINE | 75 |  | chr2 | 183098891 | 183098952 | 62 |  | U | 898 |  | 13 | 8.064516129032262 |  | HC |  | N |  | n
chr2 | 136155428 | 136155540 | LTR31 | LTR | 112 |  | chr2 | 136151683 | 136151790 | 107 |  | U | 3638 |  | 5 | 1.869158878504673 |  | HC |  | Intron | R3HDM1 | Intron | R3HDM1 |  |  |  |  |  |  |  |  | 1
chr2 | 22284823 | 22284975 | ERVL-E | LTR | 152 |  | chr2 | 22286257 | 22286383 | 126 |  | D | 1282 |  | 26 | 3.174603174603174 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr22 | 44381638 | 44381763 | MER21C | LTR | 125 |  | chr22 | 44380908 | 44380984 | 76 |  | U | 654 |  | 49 | 3.947368421052633 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 195061491 | 195061643 | L1ME3B | LINE | 153 |  | chr3 | 195060770 | 195060920 | 151 |  | U | 571 |  | 2 | 1.324503311258274 |  | HC |  | N |  | n
chr3 | 149897310 | 149897400 | L1MA4 | LINE | 90 |  | chr3 | 149898343 | 149898428 | 85 |  | D | 943 |  | 5 | 1.17647058823529 |  | HC |  | n |  | 5' UTR | AGTR1 |  |  |  | y | y |  |  |  | 1
chr3 | 109496602 | 109496841 | ALUY | SINE | 239 |  | chr3 | 109497063 | 109497302 | 239 |  | D | 222 |  | 0 | 2.100840336134457 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 74660266 | 74660354 | MIR | SINE | 88 |  | chr3 | 74661225 | 74661312 | 87 |  | D | 871 |  | 1 | 0 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 52412208 | 52412289 | L2 | LINE | 82 |  | chr6 | 52410977 | 52411057 | 81 |  | U | 1151 |  | 1 | 2.469135802469136 |  | HC |  | Intron | EFHC1 | Intron | EFHC1
chr8 | 13961485 | 13961619 | [NAME] | LTR | 134 |  | chr8 | 13962125 | 13962192 | 67 |  | D | 506 |  | 67 | 0 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 72272618 | 72272738 | ALUJO | SINE | 120 |  | chr9 | 72273616 | 72273736 | 120 |  | D | 878 |  | 0 | 1.680672268907568 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 234348661 | 234348870 | [NAME] | SINE | 209 |  | chr1 | 234349758 | 234349963 | 205 |  | D | 888 |  | 4 | 3.414634146341466 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | n | 8 bp 5'/4 bp 3' | 14 bp 3'
chr1 | 224207043 | 224207240 | ALUJ | SINE | 198 |  | chr1 | 224204904 | 224205081 | 178 |  | U | 1962 |  | 20 | 1.68539325842697 |  | HC |  | N |  | N
chr1 | 172600904 | 172601091 | [NAME] | LINE | 188 |  | chr1 | 172602888 | 172603072 | 185 |  | D | 1797 |  | 3 | 2.702702702702697 |  | HC |  | Intron | RABGAP1L | Intron | RABGAP1L | y | y
chr12 | 33813516 | 33813665 | L1PB1 | LINE | 149 |  | chr12 | 33815438 | 33815577 | 139 |  | D | 1773 |  | 10 | 4.347826086956519 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 37956699 | 37956765 | HAL1 | LINE | 66 |  | chr5 | 37953223 | 37953264 | 41 |  | U | 3435 |  | 25 | 0 |  | HC |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr7 | 24089760 | 24089986 | L1PB1 | LINE | 226 |  | chr7 | 24093242 | 24093407 | 165 |  | D | 3256 |  | 61 | 4.242424242424248 |  | HC |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 12156813 | 12156889 | ALUSX | SINE | 76 |  | chr10 | 12160929 | 12161005 | 76 |  | D | 4040 |  | 0 | 2.666666666666662 |  | HC |  | Intron | DHTKD1 | Intron | DHTKD1 |  |  |  |  |  |  |  |  | 1
chr8 | 3353107 | 3353235 | L1PA5 | LINE | 128 |  | chr8 | 3351148 | 3351270 | 122 |  | U | 1837 |  | 6 | 6.557377049180324 |  | HC |  | Intron | CSMD1 | Intron | CSMD1 |  |  |  |  |  |  |  |  | 1
chr1 | 187799236 | 187799487 | L2 | LINE | 252 |  | chr1 | 187797512 | 187797753 | 242 |  | U | 1483 |  | 10 | 5.833333333333335 |  | HCO |  | N |  | N
chr5 | 119934700 | 119934866 | L2 | LINE | 167 |  | chr5 | 119932826 | 119932975 | 150 |  | U | 1725 |  | 17 | 4.666666666666663 |  | HCO |  | Intron | PRR16 | Intron | PRR16
chr8 | 141310975 | 141311231 | ALUSG/X | SINE | 257 |  | chr8 | 141312941 | 141313210 | 270 |  | D | 1710 |  | -13 | 5.118110236220474 |  | HCO |  | Intron | NIBP | Intron | NIBP
chr1 | 172210146 | 172210313 | L2 | LINE | 168 |  | chr1 | 172207067 | 172207225 | 159 |  | U | 2921 |  | 9 | 1.257861635220126 |  | HCO |  | Intron | RC3H1 | Intron | RC3H1
chr1 | 165054964 | 165055061 | MSTA | LTR | 97 |  | chr1 | 165053208 | 165053301 | 93 |  | U | 1663 |  | 4 | 3.333333333333333 |  | HCO |  | n |  | n |  |  |  | y |  |  | y | 1 |  | 1
chr1 | 154296673 | 154296748 | ALUY | SINE | 75 |  | chr1 | 154297914 | 154297982 | 68 |  | D | 1166 |  | 7 | 0 |  | HCO |  | n |  | Intron | RAB25 |  |  |  |  |  |  |  |  | 1
chr1 | 113669081 | 113669152 | ALUJ | SINE | 72 |  | chr1 | 113670186 | 113670257 | 72 |  | D | 1034 |  | 0 | 2.777777777777779 |  | HCO |  | n |  | N
chr1 | 43746692 | 43746763 | ALUSX | SINE | 71 |  | chr1 | 43744370 | 43744426 | 56 |  | U | 2266 |  | 15 | 1.78571428571429 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 40497664 | 40497742 | ALUSC | SINE | 78 |  | chr1 | 40496321 | 40496399 | 78 |  | U | 1265 |  | 0 | 1.282051282051277 |  | HCO |  | Intron | [NAME] | 5' UTR | [NAME] |  |  |  |  |  |  |  |  | 1
chr1 | 5680589 | 5680737 | ALUSP | SINE | 148 |  | chr1 | 5680988 | 5681117 | 129 |  | D | 251 |  | 19 | 3.875968992248058 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | n | 19 bp 5'/5 bp 3' | 9 bp 3'
chr10 | 114114514 | 114114687 | MIRB | SINE | 173 |  | chr10 | 114113983 | 114114141 | 158 |  | U | 373 |  | 15 | 3.797468354430378 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 104491134 | 104491285 | ALUJ | SINE | 152 |  | chr10 | 104487817 | 104487966 | 150 |  | U | 3168 |  | 2 | 5.369127516778526 |  | HCO |  | N |  | 3' UTR | SFXN2
chr10 | 74929662 | 74929767 | MER20 | DNA | 105 |  | chr10 | 74927325 | 74927430 | 105 |  | U | 2232 |  | 0 | 5.714285714285716 |  | HCO |  | Intron | USP54 | 3' UTR | USP54 |  |  |  | y | y |  |  |  | 1 |  |  | n | n | 3 bp 5'/2 bp 3' | n | 9 bp 3'
chr10 | 73277068 | 73277167 | ALUSX | SINE | 99 |  | chr10 | 73278663 | 73278760 | 97 |  | D | 1496 |  | 2 | 3.092783505154639 |  | HCO |  | Intron | PSAP | Intron | PSAP |  |  |  |  |  |  |  |  | 1
chr10 | 61863020 | 61863144 | ALUSX | SINE | 124 |  | chr10 | 61862501 | 61862625 | 124 |  | U | 395 |  | 0 | 0.8130081300813052 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 22751254 | 22751458 | ERVL-E | LTR | 204 |  | chr10 | 22749620 | 22749783 | 163 |  | U | 1471 |  | 41 | 2.453987730061347 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chr10:22,750,661-22,750,698 | 878
chr10 | 14242739 | 14242808 | L1MA4A | LINE | 69 |  | chr10 | 14245468 | 14245520 | 52 |  | D | 2660 |  | 17 | 1.960784313725494 |  | HCO |  | Intron | FRMD4A | Intron | FRMD4A |  |  |  |  |  |  |  |  | 1
chr11 | 115476971 | 115477165 | THE1B | LTR | 194 |  | chr11 | 115479341 | 115479479 | 138 |  | D | 2176 |  | 56 | 5.797101449275366 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chr11:115,478,997-115,479,052 | 289
chr11 | 114478543 | 114478653 | MSTD | LTR | 110 |  | chr11 | 114479714 | 114479811 | 97 |  | D | 1061 |  | 13 | 6.185567010309279 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 92305259 | 92305348 | MIR | SINE | 89 |  | chr11 | 92304545 | 92304634 | 89 |  | U | 625 |  | 0 | 4.49438202247191 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 86748196 | 86748372 | LTR18A | LTR | 176 |  | chr11 | 86747270 | 86747441 | 171 |  | U | 755 |  | 5 | 4.705882352941182 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 63968597 | 63968775 | ALUJ | SINE | 179 |  | chr11 | 63966207 | 63966383 | 177 |  | U | 2214 |  | 2 | 4.519774011299438 |  | HCO |  | N |  | N
chr11 | 59044173 | 59044241 | L1PA16 | LINE | 68 |  | chr11 | 59043560 | 59043628 | 68 |  | U | 545 |  | 0 | 2.985074626865669 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | y (6 bp) | 2 bp 3' | 4 bp 5' | n
chr11 | 2991632 | 2991726 | ALUSG | SINE | 94 |  | chr11 | 2990087 | 2990178 | 91 |  | U | 1454 |  | 3 | 8.791208791208794 |  | HCO |  | Intron | CARS | Intron | CARS |  |  |  |  |  |  |  |  | 1
chr12 | 128647184 | 128647623 | MER2 | DNA | 439 |  | chr12 | 128648087 | 128648522 | 435 |  | D | 464 |  | 4 | 3.456221198156684 |  | HCO |  | Intron | TMEM132D | Intron | TMEM132D |  |  |  |  |  |  |  |  | 1
chr12 | 128464986 | 128465041 | L1MA9 | LINE | 55 |  | chr12 | 128462864 | 128462922 | 58 |  | U | 2064 |  | -3 | 3.636363636363638 |  | HCO |  | Intron | TMEM132D | Intron | TMEM132D |  |  |  |  |  |  |  |  | 1
chr12 | 126850421 | 126850553 | LTR45 | LTR | 132 |  | chr12 | 126849596 | 126849672 | 76 |  | U | 749 |  | 56 | 5.333333333333334 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 87641499 | 87641786 | L2 | LINE | 288 |  | chr12 | 87644023 | 87644245 | 223 |  | D | 2237 |  | 65 | 3.139013452914796 |  | HCO |  | N |  | N
chr12 | 59216664 | 59216740 | ALUJB | SINE | 76 |  | chr12 | 59217831 | 59217888 | 57 |  | D | 1091 |  | 19 | 1.754385964912286 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 3 bp 3' | 16 bp 5' | 4 bp 3'
chr12 | 4745089 | 4745261 | ALUSG | SINE | 172 |  | chr12 | 4747967 | 4748140 | 173 |  | D | 2706 |  | -1 | 2.325581395348841 |  | HCO |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr13 | 109581271 | 109581615 | ALUSP | SINE | 344 |  | chr13 | 109577502 | 109577832 | 330 |  | U | 3439 |  | 14 | 2.727272727272723 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 103443768 | 103444145 | THE1B | LTR | 377 |  | chr13 | 103444758 | 103445024 | 266 |  | D | 613 |  | 111 | 6.792452830188678 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 100373056 | 100373198 | ALUJO | SINE | 142 |  | chr13 | 100372484 | 100372617 | 133 |  | U | 439 |  | 9 | 3.816793893129766 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 5' | 8 bp 5' | 3 bp 3'
chr13 | 55634780 | 55635250 | L1MB8 | LINE | 470 |  | chr13 | 55636120 | 55636556 | 436 |  | D | 870 |  | 34 | 0.917431192660545 |  | HCO |  | n |  | n |  | y | y |  | y | y |  |  |  | 2 | chrX:75,398,725-75,398,751 | Diff chr
chr13 | 42516693 | 42516882 | L2 | LINE | 190 |  | chr13 | 42518338 | 42518471 | 134 |  | D | 1456 |  | 56 | 4.477611940298509 |  | HCO |  | Intron | DNAJC15 | Intron | DNAJC15
chr13 | 36764163 | 36764419 | MIR | SINE | 256 |  | chr13 | 36763246 | 36763464 | 218 |  | U | 699 |  | 38 | 3.2258064516129 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 88216674 | 88216887 | L1MED | LINE | 214 |  | chr14 | 88214630 | 88214808 | 179 |  | U | 1866 |  | 35 | 2.234636871508378 |  | HCO |  | Intron | EML5 | Intron | EML5
chr14 | 70300899 | 70300999 | TIGGER3B | DNA | 101 |  | chr14 | 70303498 | 70303554 | 57 |  | D | 2499 |  | 44 | 0 |  | HCO |  | Intron | MAP3K9 | Intron | MAP3K9
chr15 | 97166831 | 97166893 | MER21C | LTR | 62 |  | chr15 | 97167801 | 97167838 | 37 |  | D | 908 |  | 25 | 5.405405405405405 |  | HCO |  | Intron | IGF1R | Intron | IGF1R |  |  |  |  |  |  |  |  | 1
chr15 | 40019008 | 40019100 | ALUSX | SINE | 92 |  | chr15 | 40017781 | 40017867 | 86 |  | U | 1141 |  | 6 | 6.976744186046513 |  | HCO |  | Intron | EHD4 | Intron | EHD4 |  |  |  |  |  |  |  |  | 1
chr15 | 33703464 | 33703551 | ALUSX | SINE | 87 |  | chr15 | 33705994 | 33706076 | 82 |  | D | 2443 |  | 5 | 0 |  | HCO |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr15 | 30823188 | 30823391 | MLT1F1 | LTR | 203 |  | chr15 | 30827936 | 30828094 | 158 |  | D | 4545 |  | 45 | 2.531645569620256 |  | HCO |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr16 | 81852554 | 81852667 | MER20 | DNA | 113 |  | chr16 | 81851423 | 81851544 | 121 |  | U | 1010 |  | -8 | 2.654867256637172 |  | HCO |  | Intron | CDH13 | Intron | CDH13 |  |  |  |  |  |  |  |  | 1
chr16 | 51376973 | 51377194 | ALUSX | SINE | 221 |  | chr16 | 51375729 | 51375953 | 224 |  | U | 1020 |  | -3 | 5.504587155963304 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 45675957 | 45676136 | MER1A | DNA | 179 |  | chr16 | 45679327 | 45679501 | 174 |  | D | 3191 |  | 5 | 0.588235294117645 |  | HCO |  | Intron | NETO2 | Intron | NETO2 |  |  |  |  |  |  |  |  | 1
chr16 | 13932912 | 13933203 | CHARLIE1A | DNA | 291 |  | chr16 | 13929650 | 13929940 | 290 |  | U | 2972 |  | 1 | 3.125 |  | HCO |  | Intron | ERCC4 | Intron | ERCC4 |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 2 bp 5'/4 bp 3' | n | 13 bp 3'
chr18 | 27690271 | 27690375 | ALUSX | SINE | 104 |  | chr18 | 27688435 | 27688505 | 70 |  | U | 1766 |  | 34 | 1.428571428571423 |  | HCO |  | Intron | KIAA1012 | Intron | KIAA1012 |  |  |  |  |  |  |  |  | 1
chr2 | 226988215 | 226988397 | MLT1A1 | LTR | 182 |  | chr2 | 226989054 | 226989215 | 161 |  | D | 657 |  | 21 | 4.968944099378881 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 9 bp 3' | 9 bp 5' | n
chr2 | 218147770 | 218147934 | L1M2 | LINE | 165 |  | chr2 | 218146034 | 218146134 | 101 |  | U | 1636 |  | 64 | 2.970297029702973 |  | HCO |  | N |  | n
chr2 | 211771322 | 211771393 | L1MDA | LINE | 72 |  | chr2 | 211772014 | 211772079 | 66 |  | D | 621 |  | 6 | 6.060606060606055 |  | HCO |  | N |  | n
chr2 | 209935985 | 209936062 | L1MD3 | LINE | 77 |  | chr2 | 209934461 | 209934525 | 64 |  | U | 1460 |  | 13 | 7.8125 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 198249696 | 198249790 | ALUJ | SINE | 95 |  | chr2 | 198250336 | 198250430 | 95 |  | D | 546 |  | 0 | 0 |  | HCO |  | N |  | n
chr2 | 197309864 | 197310004 | L1PA11 | LINE | 140 |  | chr2 | 197308617 | 197308745 | 128 |  | U | 1119 |  | 12 | 1.5625 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 193446485 | 193446698 | L1MC1 | LINE | 213 |  | chr2 | 193443718 | 193443924 | 206 |  | U | 2561 |  | 7 | 3.883495145631066 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 140882723 | 140882864 | L2 | LINE | 142 |  | chr2 | 140884016 | 140884128 | 113 |  | D | 1152 |  | 29 | 6.194690265486724 |  | HCO |  | Intron | LRP1B | Intron | LRP1B
chr2 | 131486186 | 131486319 | L2 | LINE | 134 |  | chr2 | 131488879 | 131489001 | 123 |  | D | 2560 |  | 11 | 5.691056910569103 |  | HCO |  | Intron | ARHGEF4 | Intron | ARHGEF4
chr2 | 32214342 | 32214460 | [NAME] | SINE | 118 |  | chr2 | 32215239 | 32215349 | 110 |  | D | 779 |  | 8 | 1.818181818181819 |  | HCO |  | Intron | SPAST | Intron | SPAST |  |  |  |  |  |  |  |  | 1
chr2 | 1156122 | 1156231 | L1MB7 | LINE | 109 |  | chr2 | 1151934 | 1152037 | 103 |  | U | 4085 |  | 6 | 8.737864077669899 |  | HCO |  | Intron | SNTG2 | Intron | SNTG2 |  |  |  |  |  |  |  |  | 1
chr21 | 41358919 | 41359106 | ALUSX | SINE | 187 |  | chr21 | 41359901 | 41360085 | 184 |  | D | 795 |  | 3 | 8.15217391304348 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr22 | 28789850 | 28790135 | L1M4 | LINE | 286 |  | chr22 | 28789272 | 28789538 | 267 |  | U | 312 |  | 19 | 2.621722846441943 |  | HCO |  | N |  | n
chr3 | 190518240 | 190518621 | MER20 | DNA | 381 |  | chr3 | 190516523 | 190516879 | 356 |  | U | 1361 |  | 25 | 5.61797752808989 |  | HCO |  | Intron | FAM79B | Intron | FAM79B |  |  |  |  |  |  |  |  | 1 |  |  | n | n | n | 10 bp 5'/22 bp 3' | 12 bp 3'
chr3 | 180941811 | 180941952 | [NAME] | SINE | 141 |  | chr3 | 180944088 | 180944223 | 135 |  | D | 2136 |  | 6 | 5.223880597014929 |  | HCO |  | Intron | USP13 | Intron | USP13 |  |  |  |  |  |  |  |  | 1
chr3 | 119737474 | 119737540 | ALUSC | SINE | 66 |  | chr3 | 119739487 | 119739550 | 63 |  | D | 1947 |  | 3 | 11.11111111111112 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 106678050 | 106678200 | L2 | LINE | 151 |  | chr3 | 106676401 | 106676524 | 124 |  | U | 1526 |  | 27 | 2.479338842975209 |  | HCO |  | Intron | ALCAM | Intron | ALCAM
chr3 | 74221236 | 74221331 | L2 | LINE | 96 |  | chr3 | 74219940 | 74220030 | 91 |  | U | 1206 |  | 5 | 6.593406593406592 |  | HCO |  | N |  | n
chr3 | 71611027 | 71611286 | [NAME] | SINE | 259 |  | chr3 | 71612176 | 71612433 | 257 |  | D | 890 |  | 2 | 2.745098039215688 |  | HCO |  | Intron | FOXP1 | Intron | FOXP1 |  |  |  |  |  |  |  |  | 1
chr3 | 49720849 | 49721014 | L1MB2 | LINE | 165 |  | chr3 | 49718902 | 49719066 | 164 |  | U | 1783 |  | 1 | 4.268292682926833 |  | HCO |  | Intron | RNF123 | Intron | RNF123 |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 2 bp 5' | 1 bp 3' | n
chr3 | 24027781 | 24027968 | ALUJB | SINE | 187 |  | chr3 | 24028977 | 24029148 | 171 |  | D | 1009 |  | 16 | 2.92397660818714 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 91747 | 91847 | MER41B | LTR | 100 |  | chr3 | 90033 | 90121 | 88 |  | U | 1626 |  | 12 | 3.448275862068961 |  | HCO |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr4 | 180054101 | 180054559 | L1MEC | LINE | 459 |  | chr4 | 180055585 | 180056016 | 432 |  | D | 1026 |  | 27 | 4.205607476635508 |  | HCO |  | N |  | n
chr4 | 161923972 | 161924184 | LTR10F | LTR | 212 |  | chr4 | 161927482 | 161927664 | 182 |  | D | 3298 |  | 30 | 6.043956043956045 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 3 bp 3' | 8 bp 3' | 15 bp 5'
chr4 | 153702610 | 153702689 | ALUY | SINE | 79 |  | chr4 | 153701099 | 153701179 | 80 |  | U | 1431 |  | -1 | 5.128205128205132 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 131064227 | 131064394 | LTR37B | LTR | 167 |  | chr4 | 131062740 | 131062901 | 161 |  | U | 1326 |  | 6 | 3.726708074534157 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 119252346 | 119252480 | ALUY | SINE | 134 |  | chr4 | 119252712 | 119252840 | 128 |  | D | 232 |  | 6 | 0.78125 |  | HCO |  | Intron | NDST3 | Intron | NDST3 |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 1 bp 3' | 5 bp 5' | n
chr4 | 90890752 | 90890911 | LTR37B | LTR | 160 |  | chr4 | 90891767 | 90891910 | 144 |  | D | 856 |  | 16 | 4.166666666666663 |  | HCO |  | Intron | SNCA | Intron | SNCA
chr5 | 126417529 | 126417831 | L1PA6 | LINE | 302 |  | chr5 | 126419197 | 126419498 | 301 |  | D | 1366 |  | 1 | 2.702702702702697 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | n | 6 bp 5' | 2 bp 3'
chr5 | 110875013 | 110875147 | MIR | SINE | 134 |  | chr5 | 110873344 | 110873472 | 128 |  | U | 1541 |  | 6 | 3.937007874015752 |  | HCO |  | Intron | STARD4 | Intron | STARD4 |  |  |  |  |  |  |  |  | 1
chr5 | 23708628 | 23708722 | ALUY | SINE | 94 |  | chr5 | 23706468 | 23706535 | 67 |  | U | 2093 |  | 27 | 5.970149253731338 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 165891962 | 165892314 | L1PA5 | LINE | 352 |  | chr6 | 165891032 | 165891378 | 346 |  | U | 584 |  | 6 | 3.757225433526012 |  | HCO |  | Intron | PDE10A | Intron | PDE10A |  |  |  |  |  |  |  |  | 1
chr6 | 156058521 | 156058698 | ALUJ | SINE | 178 |  | chr6 | 156056718 | 156056853 | 136 |  | U | 1668 |  | 42 | 2.941176470588236 |  | HCO |  | N |  | n
chr6 | 96077393 | 96077610 | MER65-INT | LTR | 218 |  | chr6 | 96075773 | 96076005 | 233 |  | U | 1388 |  | -15 | 5.045871559633031 |  | HCO |  | N |  | n
chr6 | 38076430 | 38076618 | THE1B | LTR | 188 |  | chr6 | 38077559 | 38077747 | 188 |  | D | 941 |  | 0 | 3.743315508021394 |  | HCO |  | Intron | ZFAND3 | Intron | ZFAND3 |  |  |  |  |  |  |  |  | 1
chr7 | 136216136 | 136216315 | L1MC1 | LINE | 179 |  | chr7 | 136218236 | 136218375 | 139 |  | D | 1921 |  | 40 | 2.877697841726623 |  | HCO |  | Intron | CHRM2 | Intron | CHRM2 |  |  |  |  |  |  |  |  | 1
chr7 | 121976523 | 121976750 | ALUJ | SINE | 228 |  | chr7 | 121975248 | 121975355 | 108 |  | U | 1168 |  | 120 | 2.777777777777779 |  | HCO |  | Intron | CADPS2 | Intron | CADPS2
chr7 | 93368918 | 93368984 | ALUJB | SINE | 66 |  | chr7 | 93370259 | 93370309 | 50 |  | D | 1275 |  | 16 | 6.000000000000005 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 19724202 | 19724323 | ALUSC | SINE | 121 |  | chr7 | 19723248 | 19723369 | 121 |  | U | 833 |  | 0 | 3.333333333333333 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | y (9 bp) | 1 bp 5' | 4 bp 3' | n
chr8 | 123759049 | 123759214 | L1MC1 | LINE | 165 |  | chr8 | 123760434 | 123760588 | 154 |  | D | 1220 |  | 11 | 5.194805194805197 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 84167370 | 84167506 | HSMAR1 | DNA | 136 |  | chr8 | 84165872 | 84166008 | 136 |  | U | 1362 |  | 0 | 2.941176470588236 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 83671696 | 83671792 | MLT1A | LTR | 96 |  | chr8 | 83670498 | 83670594 | 96 |  | U | 1102 |  | 0 | 6.25 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 125081600 | 125081778 | MSTC | LTR | 178 |  | chr9 | 125080344 | 125080510 | 166 |  | U | 1090 |  | 12 | 4.216867469879515 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 90701015 | 90701223 | L1ME2 | LINE | 208 |  | chr9 | 90700382 | 90700580 | 198 |  | U | 435 |  | 10 | 7.57575757575758 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 36787067 | 36787257 | MLT1I | LTR | 190 |  | chr9 | 36786295 | 36786475 | 180 |  | U | 592 |  | 10 | 4.444444444444439 |  | HCO |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chrX | 150883963 | 150884047 | ALUSG | SINE | 84 |  | chrX | 150882932 | 150882987 | 55 |  | U | 976 |  | 29 | 3.636363636363638 |  | HCO |  | Intron | GABRE | Intron | GABRE |  |  |  |  |  |  |  |  | 1
chrX | 12256105 | 12256352 | MLT1H | LTR | 247 |  | chrX | 12255306 | 12255541 | 235 |  | U | 564 |  | 12 | 3.418803418803418 |  | HCO |  | Intron | FRMPD4 | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 61902687 | 61902885 | MLT2E | LTR | 198 |  | chr1 | 61904517 | 61904700 | 183 |  | D | 1632 |  | 15 | 4.371584699453557 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 133438166 | 133438329 | PABL_A | LTR | 163 |  | chr10 | 133437571 | 133437722 | 151 |  | U | 444 |  | 12 | 7.947019867549665 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 36670626 | 36670825 | TIGGER1 | DNA | 199 |  | chr10 | 36669294 | 36669475 | 181 |  | U | 1151 |  | 18 | 4.972375690607733 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 115193321 | 115193419 | ALUSX | SINE | 98 |  | chr11 | 115193856 | 115193954 | 98 |  | D | 437 |  | 0 | 2.040816326530615 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 98479281 | 98479475 | TIGGER1 | DNA | 194 |  | chr12 | 98477728 | 98477890 | 162 |  | U | 1391 |  | 32 | 1.234567901234573 |  | HCO |  | Intron | ANKS1B | Intron | ANKS1B |  |  |  |  |  |  |  |  | 1
chr13 | 112330342 | 112330500 | L1MEC | LINE | 159 |  | chr13 | 112329749 | 112329873 | 125 |  | U | 469 |  | 34 | 8.8 |  | HCO |  | N |  | N
chr15 | 97178479 | 97178674 | MLT1A | LTR | 195 |  | chr15 | 97176708 | 97176883 | 175 |  | U | 1596 |  | 20 | 8.139534883720934 |  | HCO |  | Intron | IGF1R | Intron | IGF1R |  |  |  |  |  |  |  |  | 1
chr16 | 201208 | 201335 | ALUSG | SINE | 127 |  | chr16 | 198751 | 198864 | 113 |  | U | 2344 |  | 14 | 5.309734513274334 |  | HCO |  | Intron | LUC7L | Intron | LUC7L |  |  |  |  | y |  |  |  | 1
chr17 | 17215444 | 17215557 | MER41A | LTR | 113 |  | chr17 | 17214804 | 17214908 | 104 |  | U | 536 |  | 9 | 9.615384615384615 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 105161706 | 105161820 | MLT1C | LTR | 114 |  | chr2 | 105162858 | 105162951 | 93 |  | D | 1038 |  | 21 | 5.376344086021501 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr20 | 33493612 | 33493682 | ALUSX | SINE | 70 |  | chr20 | 33492250 | 33492316 | 66 |  | U | 1296 |  | 4 | 3.030303030303028 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr21 | 30943527 | 30943662 | L1MC1 | LINE | 135 |  | chr21 | 30941782 | 30941913 | 131 |  | U | 1614 |  | 4 | 4.61538461538461 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr22 | 32592096 | 32592189 | ALUJB | SINE | 94 |  | chr22 | 32593125 | 32593211 | 87 |  | D | 936 |  | 7 | 6.896551724137934 |  | HCO |  | Intron | LARGE | Intron | LARGE
chr3 | 113699540 | 113699770 | [NAME] | SINE | 230 |  | chr3 | 113700387 | 113700604 | 217 |  | D | 617 |  | 13 | 5.555555555555558 |  | HCO |  | Intron | BTLA | Intron | BTLA |  |  |  |  |  |  |  |  | 1
chr5 | 5373974 | 5374162 | L1PA11 | LINE | 188 |  | chr5 | 5373075 | 5373253 | 178 |  | U | 721 |  | 10 | 2.285714285714291 |  | HCO |  | n |  | 3' UTR | ADAMTS16 |  |  |  |  |  |  |  |  | 1 |  |  | 2 separate deletions
chr6 | 125601558 | 125601691 | L1PB1 | LINE | 133 |  | chr6 | 125600890 | 125600986 | 96 |  | U | 572 |  | 37 | 7.36842105263158 |  | HCO |  | Intron | TPD52L1 | Intron | TPD52L1 |  |  |  |  |  |  |  |  | 1
chr8 | 38211615 | 38211920 | ALUSX | SINE | 305 |  | chr8 | 38210799 | 38211100 | 301 |  | U | 515 |  | 4 | 3 |  | HCO |  | Intron | DDHD2 | I/E | DDHD2 |  |  |  | y | y |  |  |  | 1
chr8 | 18045116 | 18045302 | MER41B | LTR | 186 |  | chr8 | 18043768 | 18043954 | 186 |  | U | 1162 |  | 0 | 4.838709677419351 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 124136121 | 124136376 | ALUSX | SINE | 255 |  | chr9 | 124134835 | 124135054 | 219 |  | U | 1067 |  | 36 | 5.52995391705069 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 83412937 | 83413044 | ALUJO | SINE | 107 |  | chr9 | 83412346 | 83412450 | 104 |  | U | 487 |  | 3 | 5.769230769230771 |  | HCO |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr9 | 78884050 | 78884297 | LTR8A | LTR | 247 |  | chr9 | 78885958 | 78886152 | 194 |  | D | 1661 |  | 53 | 5.670103092783507 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chr11:118,055,747-118,055,772 | Diff chr
chr9 | 78453511 | 78453676 | L1MC1 | LINE | 165 |  | chr9 | 78450097 | 78450258 | 161 |  | U | 3253 |  | 4 | 3.105590062111796 |  | HCO |  | Intron | [NAME] | Intron | [NAME] |  |  |  |  |  |  |  |  | 1
chr9 | 1652227 | 1652338 | L2 | LINE | 112 |  | chr9 | 1650863 | 1650937 | 75 |  | U | 1290 |  | 37 | 5.333333333333334 |  | HCO |  | N |  | n
chr1 | 171519941 | 171520102 | TIGGER1 | DNA | 161 |  | chr1 | 171518836 | 171518992 | 156 |  | U | 949 |  | 5 | 2.564102564102566 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 94292975 | 94293144 | MER20 | DNA | 169 |  | chr11 | 94295644 | 94295800 | 156 |  | D | 2500 |  | 13 | 5.769230769230771 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 1 bp 3' | 8 bp 5' | 3 bp 3'
chr11 | 69470239 | 69470425 | THE1C | LTR | 186 |  | chr11 | 69469708 | 69469887 | 179 |  | U | 352 |  | 7 | 8.045977011494255 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 33690136 | 33690415 | L1MB7 | LINE | 279 |  | chr11 | 33691004 | 33691271 | 267 |  | D | 589 |  | 12 | 4.580152671755721 |  | HCO |  | Intron | CD59 | Intron | CD59 |  |  |  |  |  |  |  |  | 1
chr12 | 116039406 | 116039464 | L1MA9 | LINE | 58 |  | chr12 | 116041391 | 116041434 | 43 |  | D | 1927 |  | 15 | 0 |  | HCO |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr12 | 94819867 | 94819991 | L2 | LINE | 125 |  | chr12 | 94822132 | 94822226 | 95 |  | D | 2141 |  | 30 | 2.105263157894732 |  | HCO |  | Intron | CCDC38 | Intron | CCDC38
chr13 | 42088114 | 42088401 | MER50 | LTR | 287 |  | chr13 | 42086684 | 42086971 | 287 |  | U | 1143 |  | 0 | 10.10452961672473 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 67389803 | 67389935 | MLT1E2 | LTR | 132 |  | chr14 | 67390280 | 67390409 | 129 |  | D | 345 |  | 3 | 5.426356589147286 |  | HCO |  | Intron | RAD51L1 | Intron | RAD51L1 |  |  |  |  |  |  |  |  | 1
chr14 | 35205139 | 35205342 | ALUSX | SINE | 203 |  | chr14 | 35202975 | 35203176 | 201 |  | U | 1963 |  | 2 | 6.965174129353235 |  | HCO |  | Intron | GARNL1 | Intron | GARNL1 |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 1 bp 5'/3 bp 3' | n | 5 bp 3'
chr19 | 14769712 | 14769815 | MLT1C | LTR | 103 |  | chr19 | 14773122 | 14773204 | 82 |  | D | 3307 |  | 21 | 9.756097560975608 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 88467442 | 88467873 | [NAME] | DNA | 432 |  | chr2 | 88469196 | 88469568 | 373 |  | D | 1323 |  | 59 | 2.680965147453085 |  | HCO |  | N |  | n
chr2 | 82389199 | 82389351 | L1MA9 | LINE | 152 |  | chr2 | 82391523 | 82391647 | 124 |  | D | 2172 |  | 28 | 2.439024390243905 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 5 bp 5' | 15 bp 3' | n
chr22 | 24687446 | 24687744 | [NAME] | LTR | 298 |  | chr22 | 24686127 | 24686424 | 297 |  | U | 1022 |  | 1 | 5.782312925170063 |  | HCO |  | Intron | MYO18B | Intron | MYO18B | y | y |  | y | y |  |  |  | 1
chr4 | 68177084 | 68177291 | L2 | LINE | 208 |  | chr4 | 68175053 | 68175234 | 182 |  | U | 1850 |  | 26 | 4.395604395604391 |  | HCO |  | Intron | UBA6 | Intron | UBA6
chr5 | 145727553 | 145727737 | [NAME] | SINE | 184 |  | chr5 | 145723081 | 145723265 | 184 |  | U | 4288 |  | 0 | 7.608695652173914 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 27200130 | 27200356 | TIGGER3B | DNA | 226 |  | chr5 | 27199133 | 27199356 | 223 |  | U | 774 |  | 3 | 4.95495495495496 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | 4 bp 5' | 4 bp 3' | 6 bp 3'
chr6 | 101255708 | 101255861 | THE1B | LTR | 153 |  | chr6 | 101251552 | 101251686 | 134 |  | U | 4022 |  | 19 | 5.223880597014929 |  | HCO |  | Intron | ASCC3 | Intron | ASCC3 |  |  |  |  |  |  |  |  | 1
chr7 | 151333596 | 151333923 | L2 | LINE | 328 |  | chr7 | 151330939 | 151331246 | 308 |  | U | 2350 |  | 20 | 4.870129870129869 |  | HCO |  | Intron | GALNTL5 | E/I | GALNTL5
chr8 | 135554785 | 135554986 | ALUSG | SINE | 201 |  | chr8 | 135555848 | 135555985 | 137 |  | D | 862 |  | 64 | 3.649635036496346 |  | HCO |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr8 | 84051087 | 84051246 | L1MC2 | LINE | 159 |  | chr8 | 84050526 | 84050678 | 152 |  | U | 409 |  | 7 | 2.631578947368418 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 73416465 | 73416589 | HSMAR2 | DNA | 124 |  | chr8 | 73418718 | 73418810 | 92 |  | D | 2129 |  | 32 | 14.13043478260869 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 12757578 | 12757740 | TIGGER3(GOLEM) | DNA | 162 |  | chr9 | 12759567 | 12759672 | 105 |  | D | 1827 |  | 57 | 5.714285714285716 |  | HCO |  | n |  | n |  |  |  |  |  |  |  |  |  | 1 |  |  | n | n | n | 34 bp 5'/46 bp 3' | n
chrX | 147762243 | 147762669 | L1M | LINE | 427 |  | chrX | 147760781 | 147760985 | 205 |  | U | 1258 |  | 222 | 4.878048780487809 |  | HCO |  | Intron | AFF2 | Intron | AFF2
chrX | 29132619 | 29132755 | L1MA4 | LINE | 136 |  | chrX | 29134567 | 29134672 | 105 |  | D | 1812 |  | 31 | 1.904761904761909 |  | HCO |  | Intron | IL1RAPL1 | Intron | IL1RAPL1 |  |  |  |  |  |  |  |  | 1
chr19 | 53341397 | 53341575 | ALUSP | SINE | 178 |  | chr19 | 53342139 | 53342315 | 176 |  | D | 564 |  | 2 | 1.136363636363635 |  | HCO |  | Intron | LIG1 | Intron | LIG1 |  |  |  |  |  |  |  |  | 1
chr11 | 70495155 | 70495360 | ALUJ | SINE | 206 |  | chr11 | 70496160 | 70496358 | 199 |  | D | 800 |  | 7 | 14.07035175879398 |  | HCOR |  | N |  | N
chr14 | 40370693 | 40370992 | L1PA16 | LINE | 299 |  | chr14 | 40370332 | 40370604 | 272 |  | U | 89 |  | 27 | 13.38289962825279 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr19 | 6127152 | 6127727 | MIR | SINE | 575 |  | chr19 | 6128210 | 6128524 | 314 |  | D | 483 |  | 261 | 4.140127388535031 |  | HCOR |  | Intron | ACSBG2 | I/E/I | ACSBG2 | y | y |  | y | y |  |  |  | 1
chr19 | 40077104 | 40077239 | L1MEE | LINE | 136 |  | chr19 | 40076089 | 40076202 | 114 |  | U | 902 |  | 22 | 13.1578947368421 |  | HCOR |  | N |  | n
chr3 | 40665805 | 40665971 | MLT1H | LTR | 167 |  | chr3 | 40663889 | 40664062 | 174 |  | U | 1743 |  | -7 | 7.741935483870965 |  | HCOR |  | N |  | n
chr4 | 98797306 | 98797431 | ZAPHOD | DNA | 126 |  | chr4 | 98799912 | 98799971 | 60 |  | D | 2481 |  | 66 | 3.333333333333333 |  | HCOR |  | Intron | C4ORF37 | Intron | C4ORF37
chr5 | 100637183 | 100637298 | L1MEC | LINE | 116 |  | chr5 | 100635388 | 100635495 | 108 |  | U | 1688 |  | 8 | 6.481481481481477 |  | HCOR |  | N |  | n
chr5 | 83954009 | 83954162 | LTR16B | LTR | 154 |  | chr5 | 83955402 | 83955554 | 153 |  | D | 1240 |  | 1 | 6.040268456375841 |  | HCOR |  | N |  | n
chr7 | 16381197 | 16381334 | L2 | LINE | 138 |  | chr7 | 16379993 | 16380106 | 114 |  | U | 1091 |  | 24 | 7.894736842105265 |  | HCOR |  | Intron | LOC729920 | Intron | LOC729920
chr3 | 46525806 | 46525878 | MER83 | LTR | 72 |  | chr3 | 46525198 | 46525252 | 54 |  | U | 554 |  | 18 | 3.703703703703709 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 214036826 | 214037018 | TIGGER1 | DNA | 192 |  | chr1 | 214040265 | 214040434 | 169 |  | D | 3247 |  | 23 | 8.284023668639051 |  | HCOR |  | Intron | USH2A | Intron | USH2A |  |  |  |  |  |  |  |  | 1
chr1 | 198539476 | 198539621 | ALUJB | SINE | 145 |  | chr1 | 198536322 | 198536433 | 111 |  | U | 3043 |  | 34 | 4.504504504504503 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 180841166 | 180841233 | MIR | SINE | 67 |  | chr1 | 180839695 | 180839733 | 38 |  | U | 1433 |  | 29 | 5.405405405405405 |  | HCOR |  | n |  | Intron |  |  |  |  |  |  |  |  |  | 1
chr1 | 160636264 | 160636425 | L1PA11 | LINE | 161 |  | chr1 | 160635308 | 160635458 | 150 |  | U | 806 |  | 11 | 5.333333333333334 |  | HCOR |  | Intron | SH2D1B | E/I | SH2D1B |  |  |  |  |  |  |  |  | 1
chr1 | 159102383 | 159102475 | [NAME] | LTR | 92 |  | chr1 | 159103009 | 159103082 | 73 |  | D | 534 |  | 19 | 2.73972602739726 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 155049660 | 155049844 | ALUSG/X | SINE | 185 |  | chr1 | 155050927 | 155051039 | 113 |  | D | 1083 |  | 72 | 1.769911504424782 |  | HCOR |  | Intron | SH2D2A | Intron | SH2D2A
chr1 | 151526609 | 151526812 | L2 | LINE | 204 |  | chr1 | 151528915 | 151529099 | 185 |  | D | 2103 |  | 19 | 5.94594594594594 |  | HCOR |  | n |  | N
chr1 | 101551639 | 101551892 | MIR | SINE | 253 |  | chr1 | 101554400 | 101554653 | 253 |  | D | 2508 |  | 0 | 4.743083003952564 |  | HCOR |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr1 | 101420775 | 101420920 | ALUJB | SINE | 145 |  | chr1 | 101421729 | 101421862 | 133 |  | D | 809 |  | 12 | 0 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 76176486 | 76176686 | L1MB1 | LINE | 200 |  | chr1 | 76177778 | 76177947 | 169 |  | D | 1092 |  | 31 | 3.550295857988162 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 2 | chr2:225,021,632-225,021,652 | Diff chr
chr1 | 69431289 | 69431423 | ALUSG | SINE | 134 |  | chr1 | 69429373 | 69429505 | 132 |  | U | 1784 |  | 2 | 6.818181818181824 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 64856419 | 64856723 | MIR | SINE | 304 |  | chr1 | 64854977 | 64855266 | 289 |  | U | 1153 |  | 15 | 4.980842911877392 |  | HCOR |  | Intron | CACHD1 | Intron | CACHD1 |  |  |  |  |  |  |  |  | 1
chr1 | 56259432 | 56259696 | THE1A | LTR | 264 |  | chr1 | 56258790 | 56259046 | 256 |  | U | 386 |  | 8 | 8.267716535433067 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 36305792 | 36305928 | ALUSG | SINE | 136 |  | chr1 | 36305219 | 36305349 | 130 |  | U | 443 |  | 6 | 8.527131782945741 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 35045856 | 35045995 | ALUSG | SINE | 139 |  | chr1 | 35044357 | 35044484 | 127 |  | U | 1372 |  | 12 | 6.299212598425196 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 20468446 | 20468514 | MLT1B | LTR | 68 |  | chr1 | 20465883 | 20465947 | 64 |  | U | 2499 |  | 4 | 10.9375 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 32033163 | 32033396 | MSTA | LTR | 233 |  | chr10 | 32034758 | 32034979 | 221 |  | D | 1362 |  | 12 | 5.429864253393668 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 31273647 | 31273732 | L1MEC | LINE | 86 |  | chr10 | 31272095 | 31272181 | 87 |  | U | 1466 |  | -1 | 5.813953488372093 |  | HCOR |  | Intron | ZNF438 | Intron | ZNF438
chr10 | 2420364 | 2420694 | L1MA4 | LINE | 330 |  | chr10 | 2424781 | 2425034 | 253 |  | D | 4087 |  | 77 | 8.4 |  | HCOR |  | n |  | n |  |  |  |  | y |  |  |  |  | 1
chr11 | 132604571 | 132604679 | TIGGER7 | DNA | 108 |  | chr11 | 132605123 | 132605212 | 89 |  | D | 444 |  | 19 | 8.98876404494382 |  | HCOR |  | Intron | OPCML | Intron | OPCML |  |  |  |  |  |  |  |  | 1
chr11 | 118494388 | 118494496 | L1PB4 | LINE | 108 |  | chr11 | 118492961 | 118493044 | 83 |  | U | 1344 |  | 25 | 7.228915662650603 |  | HCOR |  | n |  | 3' UTR | TMEM24 |  |  |  | y | y |  |  |  | 1
chr11 | 112428856 | 112429042 | L1PA10 | LINE | 186 |  | chr11 | 112425511 | 112425697 | 186 |  | U | 3159 |  | 0 | 6.521739130434778 |  | HCOR |  | Intron | NCAM1 | Intron | NCAM1 |  |  |  |  |  |  |  |  | 1
chr11 | 107933200 | 107933342 | [NAME] | SINE | 142 |  | chr11 | 107933589 | 107933727 | 138 |  | D | 247 |  | 4 | 6.766917293233088 |  | HCOR |  | Intron | EXPH5 | Intron | EXPH5 |  |  |  |  |  |  |  |  | 1
chr11 | 106081190 | 106081346 | L1ME3B | LINE | 157 |  | chr11 | 106079936 | 106080078 | 143 |  | U | 1112 |  | 14 | 4.195804195804198 |  | HCOR |  | Intron | GUCY1A2 | Intron | GUCY1A2
chr11 | 96466512 | 96466658 | L1MA9 | LINE | 146 |  | chr11 | 96465842 | 96465987 | 145 |  | U | 525 |  | 1 | 2.777777777777779 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 78986341 | 78986558 | MIRB | SINE | 217 |  | chr11 | 78983496 | 78983674 | 178 |  | U | 2667 |  | 39 | 5.0561797752809 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 77645011 | 77645101 | L1MB8 | LINE | 90 |  | chr11 | 77645745 | 77645831 | 86 |  | D | 644 |  | 4 | 2.352941176470591 |  | HCOR |  | Intron | GAB2 | Intron | GAB2 |  |  |  | y | y |  |  |  | 1
chr11 | 36986222 | 36986382 | LTR8A | LTR | 160 |  | chr11 | 36984307 | 36984453 | 146 |  | U | 1769 |  | 14 | 4.137931034482756 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 36947678 | 36947862 | LTR16C | LTR | 184 |  | chr11 | 36948729 | 36948909 | 180 |  | D | 867 |  | 4 | 3.37078651685393 |  | HCOR |  | n |  | n |  | y | y | y | y | y | y | 1 |  | 1 |  |  |  | 0
chr11 | 35627077 | 35627270 | MLT1H2 | LTR | 193 |  | chr11 | 35628344 | 35628483 | 139 |  | D | 1074 |  | 54 | 3.649635036496346 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 26251021 | 26251173 | TIGGER2 | DNA | 152 |  | chr11 | 26249957 | 26250092 | 135 |  | U | 929 |  | 17 | 6.666666666666665 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr11 | 21187833 | 21187958 | L1MB7 | LINE | 125 |  | chr11 | 21185112 | 21185235 | 123 |  | U | 2598 |  | 2 | 5.737704918032782 |  | HCOR |  | Intron | NELL1 | Intron | NELL1 |  |  |  |  |  |  |  |  | 1
chr12 | 126967229 | 126967505 | MLT1D | LTR | 276 |  | chr12 | 126968029 | 126968289 | 260 |  | D | 524 |  | 16 | 6.2015503875969 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 97874592 | 97874662 | L2 | LINE | 71 |  | chr12 | 97876205 | 97876257 | 53 |  | D | 1543 |  | 18 | 4 |  | HCOR |  | Intron | ANKS1B | Intron | ANKS1B
chr12 | 60954363 | 60954516 | ALUJO | SINE | 153 |  | chr12 | 60952406 | 60952517 | 111 |  | U | 1846 |  | 42 | 1.801801801801806 |  | HCOR |  | Intron | USP15 | Intron | USP15 |  |  |  |  |  |  |  |  | 1
chr12 | 52830345 | 52830444 | ALUSP | SINE | 99 |  | chr12 | 52829273 | 52829363 | 90 |  | U | 982 |  | 9 | 4.444444444444439 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr12 | 22158432 | 22158547 | LTR8 | LTR | 115 |  | chr12 | 22156648 | 22156760 | 112 |  | U | 1672 |  | 3 | 4.46428571428571 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 109556371 | 109556447 | MIR | SINE | 76 |  | chr13 | 109560323 | 109560377 | 54 |  | D | 3876 |  | 22 | 12.96296296296297 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 107196216 | 107196534 | THE1C | LTR | 318 |  | chr13 | 107191440 | 107191761 | 321 |  | U | 4455 |  | -3 | 8.012820512820518 |  | HCOR |  | Intron | LOC728215 | Intron | LOC728215 |  |  |  |  |  |  |  |  | 1
chr13 | 80211560 | 80211685 | L1MA8 | LINE | 125 |  | chr13 | 80212830 | 80212928 | 98 |  | D | 1145 |  | 27 | 4.081632653061229 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 59788964 | 59789161 | L2 | LINE | 198 |  | chr13 | 59791016 | 59791126 | 111 |  | D | 1855 |  | 87 | 1.801801801801806 |  | HCOR |  | N |  | N
chr13 | 49763774 | 49763949 | MSTB | LTR | 175 |  | chr13 | 49765020 | 49765185 | 165 |  | D | 1071 |  | 10 | 4.848484848484846 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 41489701 | 41489770 | ERVL-E | LTR | 69 |  | chr13 | 41487072 | 41487120 | 48 |  | U | 2581 |  | 21 | 6.25 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr13 | 22134147 | 22134369 | MLT1C-INT | LTR | 223 |  | chr13 | 22132023 | 22132167 | 145 |  | U | 1980 |  | 78 | 6.206896551724139 |  | HCOR |  | N |  | N
chr14 | 94387479 | 94387583 | [NAME] | SINE | 104 |  | chr14 | 94386743 | 94386837 | 94 |  | U | 642 |  | 10 | 11.70212765957447 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 66232597 | 66232744 | L1MC1 | LINE | 147 |  | chr14 | 66233279 | 66233419 | 140 |  | D | 535 |  | 7 | 6.015037593984962 |  | HCOR |  | Intron | GPHN | Intron | GPHN |  |  |  |  |  |  |  |  | 1
chr15 | 99820619 | 99820909 | LTR33 | LTR | 291 |  | chr15 | 99821667 | 99821930 | 264 |  | D | 758 |  | 27 | 2.281368821292773 |  | HCOR |  | Intron | PCSK6 | Intron | PCSK6
chr15 | 95419036 | 95419109 | MLT1A | LTR | 73 |  | chr15 | 95420051 | 95420120 | 69 |  | D | 942 |  | 4 | 4.347826086956519 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr15 | 92050772 | 92051034 | L1MC3 | LINE | 262 |  | chr15 | 92052036 | 92052290 | 254 |  | D | 1002 |  | 8 | 6.746031746031744 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr15 | 87157053 | 87157318 | L2 | LINE | 266 |  | chr15 | 87155240 | 87155445 | 206 |  | U | 1608 |  | 60 | 5.825242718446599 |  | HCOR |  | Intron | ACAN | Intron | ACAN
chr15 | 84951492 | 84951596 | L1MC2 | LINE | 104 |  | chr15 | 84949753 | 84949838 | 85 |  | U | 1654 |  | 19 | 11.76470588235294 |  | HCOR |  | Intron | AGBL1 | Intron | AGBL1 |  |  |  |  |  |  |  |  | 1
chr15 | 47142694 | 47142866 | LTR1 | LTR | 172 |  | chr15 | 47140741 | 47140911 | 170 |  | U | 1783 |  | 2 | 6.508875739644971 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 86190658 | 86190709 | MLT1G1 | LTR | 51 |  | chr16 | 86192838 | 86192886 | 48 |  | D | 2129 |  | 3 | 6.25 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 58849654 | 58849768 | HAL1 | LINE | 114 |  | chr16 | 58850279 | 58850385 | 106 |  | D | 511 |  | 8 | 6.603773584905658 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 47317064 | 47317132 | [NAME] | LTR | 68 |  | chr16 | 47312769 | 47312828 | 59 |  | U | 4236 |  | 9 | 0 |  | HCOR |  | n |  | n |  |  | y | y | y | y | y | 1 |  | 1
chr16 | 23709574 | 23709745 | LTR51 | LTR | 171 |  | chr16 | 23705413 | 23705515 | 102 |  | U | 4059 |  | 69 | 4.90196078431373 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 20277361 | 20277424 | ALUJB | SINE | 63 |  | chr16 | 20278035 | 20278082 | 47 |  | D | 611 |  | 16 | 0 |  | HCOR |  | n |  | 3' UTR | PDILT |  |  |  |  |  |  |  |  | 1
chr16 | 4337154 | 4337285 | ALUJB | SINE | 131 |  | chr16 | 4335549 | 4335668 | 119 |  | U | 1486 |  | 12 | 4.23728813559322 |  | HCOR |  | Intron | Magmas | Intron | Magmas |  |  |  |  |  |  |  |  | 1
chr17 | 65853702 | 65853863 | MER20 | DNA | 161 |  | chr17 | 65856113 | 65856274 | 161 |  | D | 2250 |  | 0 | 8.75 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 34369569 | 34369732 | ALUJ | SINE | 164 |  | chr17 | 34368321 | 34368468 | 148 |  | U | 1101 |  | 16 | 4.729729729729726 |  | HCOR |  | Intron | FBX047 | Intron | FBX047
chr17 | 5548974 | 5549100 | MIR | SINE | 126 |  | chr17 | 5547571 | 5547679 | 108 |  | U | 1295 |  | 18 | 8.333333333333337 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 3870248 | 3870459 | ALUJO | SINE | 211 |  | chr17 | 3868062 | 3868235 | 173 |  | U | 2013 |  | 38 | 9.826589595375722 |  | HCOR |  | Intron | ZZEF1 | Intron | ZZEF1 |  |  |  |  |  |  |  |  | 1
chr18 | 72401272 | 72401414 | L1PA15 | LINE | 142 |  | chr18 | 72400691 | 72400823 | 132 |  | U | 449 |  | 10 | 4.580152671755721 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 60232293 | 60232459 | MER49 | LTR | 166 |  | chr18 | 60230218 | 60230384 | 166 |  | U | 1909 |  | 0 | 6.097560975609762 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 53356013 | 53356135 | THE1D | LTR | 122 |  | chr18 | 53357003 | 53357122 | 119 |  | D | 868 |  | 3 | 5.042016806722693 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr18 | 35362120 | 35362273 | LTR53 | LTR | 153 |  | chr18 | 35365905 | 35366051 | 146 |  | D | 3632 |  | 7 | 2.054794520547942 |  | HCOR |  | n |  | n |  | y | y | y | y | y | y | 8/10 - 80% |  | 1
chr18 | 25760062 | 25760399 | MLT1D | LTR | 337 |  | chr18 | 25760966 | 25761301 | 335 |  | D | 567 |  | 2 | 6.586826347305386 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr19 | 16884465 | 16884518 | ALUSX | SINE | 53 |  | chr19 | 16886293 | 16886341 | 48 |  | D | 1775 |  | 5 | 6.25 |  | HCOR |  | Intron | CPAMD8 | I/E | CPAMD8 |  |  |  | y | y |  |  |  | 1
chr19 | 16368489 | 16368557 | L1MB2 | LINE | 69 |  | chr19 | 16369248 | 16369299 | 52 |  | D | 691 |  | 17 | 11.76470588235294 |  | HCOR |  | Intron | EPS15L1 | Intron | EPS15L1
chr2 | 206028236 | 206028312 | MIR | SINE | 76 |  | chr2 | 206027171 | 206027237 | 66 |  | U | 999 |  | 10 | 1.515151515151514 |  | HCOR |  | Intron | PARD3B | Intron | PARD3B | y | y | y | y | y | y | 2 TFBS - 1 @ 100%, 2 @ 21/22 - 95% |  | 1
chr2 | 205575849 | 205575971 | MLT1D | LTR | 122 |  | chr2 | 205574671 | 205574783 | 112 |  | U | 1066 |  | 10 | 8.92857142857143 |  | HCOR |  | Intron | PARD3B | Intron | PARD3B |  |  |  |  |  |  |  |  | 1
chr2 | 203979874 | 203980136 | ALUSX | SINE | 262 |  | chr2 | 203980765 | 203981026 | 261 |  | D | 629 |  | 1 | 5.769230769230771 |  | HCOR |  | Intron | ABI2 | Intron | ABI2 |  |  |  |  |  |  |  |  | 1
chr2 | 199781279 | 199781355 | L2 | LINE | 77 |  | chr2 | 199779778 | 199779853 | 76 |  | U | 1426 |  | 1 | 5.263157894736848 |  | HCOR |  | N |  | n
chr2 | 198874779 | 198875002 | ALUSX | SINE | 223 |  | chr2 | 198878733 | 198878927 | 194 |  | D | 3731 |  | 29 | 3.608247422680411 |  | HCOR |  | n |  | n |  | y | y |  | y | y |  |  |  | 2 | chr2:198,875,273-198,875,301 | 3432
chr2 | 157392094 | 157392187 | L1MA4A | LINE | 93 |  | chr2 | 157387674 | 157387749 | 75 |  | U | 4345 |  | 18 | 4.054054054054057 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 119878847 | 119879111 | MER45A | DNA | 265 |  | chr2 | 119879439 | 119879669 | 231 |  | D | 328 |  | 34 | 5.194805194805197 |  | HCOR |  | N |  | n
chr2 | 117639495 | 117639564 | LTR44 | LTR | 69 |  | chr2 | 117639947 | 117639999 | 52 |  | D | 383 |  | 17 | 3.846153846153844 |  | HCOR |  | n |  | n |  |  |  | y | Goes with below |  | y | Goes with below |  | 1
chr2 | 104121177 | 104121264 | MSTB | LTR | 87 |  | chr2 | 104120250 | 104120334 | 84 |  | U | 843 |  | 3 | 9.638554216867467 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 98939819 | 98939974 | [NAME] | LINE | 155 |  | chr2 | 98941155 | 98941289 | 134 |  | D | 1181 |  | 21 | 8.208955223880599 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 74733616 | 74733671 | MLT1F | LTR | 55 |  | chr2 | 74732502 | 74732557 | 55 |  | U | 1059 |  | 0 | 10.90909090909091 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 51077779 | 51077853 | ALUJB | SINE | 74 |  | chr2 | 51078487 | 51078561 | 74 |  | D | 634 |  | 0 | 6.849315068493156 |  | HCOR |  | Intron | NRXN1 | Intron | NRXN1 |  |  |  |  |  |  |  |  | 1
chr2 | 42372698 | 42372863 | [NAME] | LINE | 165 |  | chr2 | 42367754 | 42367877 | 123 |  | U | 4821 |  | 42 | 4.065040650406504 |  | HCOR |  | Intron | EML4 | Intron | EML4 |  |  |  |  |  |  |  |  | 1
chr2 | 18759204 | 18759400 | THE1B | LTR | 196 |  | chr2 | 18759828 | 18759973 | 145 |  | D | 428 |  | 51 | 4.82758620689655 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 18093733 | 18093793 | MLT1B | LTR | 60 |  | chr2 | 18091677 | 18091726 | 49 |  | U | 2007 |  | 11 | 4.081632653061229 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr20 | 52161051 | 52161239 | ALUSX | SINE | 188 |  | chr20 | 52162654 | 52162797 | 143 |  | D | 1415 |  | 45 | 5.839416058394164 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr21 | 35514623 | 35514850 | L1MED | LINE | 228 |  | chr21 | 35512026 | 35512247 | 222 |  | U | 2376 |  | 6 | 4.054054054054057 |  | HCOR |  | N |  | n
chr21 | 19810806 | 19810971 | L1PA15 | LINE | 166 |  | chr21 | 19811324 | 19811450 | 127 |  | D | 353 |  | 39 | 11.81102362204724 |  | HCOR |  | N |  | n
chr22 | 38178547 | 38178778 | MER72 | LTR | 231 |  | chr22 | 38180268 | 38180423 | 155 |  | D | 1490 |  | 76 | 5.298013245033117 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 148808028 | 148808131 | HAL1 | LINE | 103 |  | chr3 | 148807042 | 148807136 | 94 |  | U | 892 |  | 9 | 4.255319148936165 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 99013635 | 99013870 | TIGGER1 | DNA | 235 |  | chr3 | 99012234 | 99012486 | 252 |  | U | 1149 |  | -17 | 5.982905982905984 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 79135450 | 79135516 | MIR | SINE | 66 |  | chr3 | 79137261 | 79137318 | 57 |  | D | 1745 |  | 9 | 14.03508771929824 |  | HCOR |  | Intron | [NAME] | Intron | [NAME] |  |  |  | y | y |  |  |  | 1
chr3 | 59461674 | 59461807 | MIRB | SINE | 133 |  | chr3 | 59465427 | 59465551 | 124 |  | D | 3620 |  | 9 | 4.838709677419351 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr3 | 44905795 | 44905958 | ALUJO | SINE | 163 |  | chr3 | 44907684 | 44907842 | 158 |  | D | 1726 |  | 5 | 6.451612903225811 |  | HCOR |  | Intron | TGM4 | Intron | TGM4 |  |  |  |  |  |  |  |  | 1
chr3 | 22810963 | 22811025 | MIRB | SINE | 62 |  | chr3 | 22813102 | 22813153 | 51 |  | D | 2077 |  | 11 | 5.882352941176472 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 190971865 | 190971969 | L1MC4 | LINE | 105 |  | chr4 | 190975548 | 190975597 | 50 |  | D | 3579 |  | 55 | 6.000000000000005 |  | HCOR |  | N |  | n
chr4 | 142138105 | 142138195 | ALUSG | SINE | 90 |  | chr4 | 142139868 | 142139958 | 90 |  | D | 1673 |  | 0 | 7.777777777777772 |  | HCOR |  | Intron | RNF150 | Intron | RNF150 |  |  |  |  |  |  |  |  | 1
chr4 | 138952726 | 138952943 | MLT1G1-INT | LTR | 218 |  | chr4 | 138950338 | 138950551 | 214 |  | U | 2175 |  | 4 | 6.103286384976525 |  | HCOR |  | N |  | n
chr4 | 135195804 | 135195872 | MLT1B | LTR | 68 |  | chr4 | 135194419 | 135194458 | 39 |  | U | 1346 |  | 29 | 7.692307692307687 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 101026565 | 101026751 | MIR3 | SINE | 187 |  | chr4 | 101027677 | 101027796 | 120 |  | D | 926 |  | 67 | 5 |  | HCOR |  | Intron | MAP2K1IP1 | Intron | MAP2K1IP1
chr4 | 96458233 | 96458329 | MLT1D | LTR | 97 |  | chr4 | 96456680 | 96456773 | 94 |  | U | 1460 |  | 3 | 3.191489361702127 |  | HCOR |  | Intron | UNC5C | Intron | UNC5C
chr4 | 56634351 | 56634434 | L1PA7 | LINE | 83 |  | chr4 | 56630867 | 56630950 | 83 |  | U | 3401 |  | 0 | 4.81927710843374 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 45512541 | 45512810 | MLT1E1A | LTR | 269 |  | chr4 | 45513327 | 45513584 | 257 |  | D | 517 |  | 12 | 3.891050583657585 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 23727025 | 23727123 | L2 | LINE | 99 |  | chr4 | 23729409 | 23729484 | 76 |  | D | 2286 |  | 23 | 3.947368421052633 |  | HCOR |  | N |  | n
chr4 | 19239365 | 19239868 | MLT1C | LTR | 503 |  | chr4 | 19240884 | 19241357 | 473 |  | D | 1016 |  | 30 | 5.285412262156452 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 16986537 | 16986618 | MER3 | DNA | 81 |  | chr4 | 16985402 | 16985471 | 69 |  | U | 1066 |  | 12 | 1.449275362318836 |  | HCOR |  | n |  | n |  |  |  | y | Goes with below |  | y | Goes with below |  | 1
chr4 | 14861999 | 14862205 | THE1D | LTR | 206 |  | chr4 | 14862590 | 14862776 | 186 |  | D | 385 |  | 20 | 5.94594594594594 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 171392530 | 171392709 | THE1C | LTR | 179 |  | chr5 | 171393623 | 171393789 | 166 |  | D | 914 |  | 13 | 6.024096385542165 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 121454585 | 121454769 | MER1A | DNA | 184 |  | chr5 | 121455325 | 121455506 | 181 |  | D | 556 |  | 3 | 4.41988950276243 |  | HCOR |  | n |  | n |  | y | y |  | y | y |  |  |  | 1
chr5 | 112218838 | 112218984 | [NAME] | LINE | 147 |  | chr5 | 112219744 | 112219887 | 144 |  | D | 760 |  | 3 | 9.285714285714286 |  | HCOR |  | N |  | n
chr5 | 111719620 | 111719730 | ERVL-E | LTR | 110 |  | chr5 | 111718152 | 111718215 | 63 |  | U | 1405 |  | 47 | 9.523809523809524 |  | HCOR |  | Intron | EPB41L4A | Intron | EPB41L4A |  |  |  |  |  |  |  |  | 1
chr5 | 90870553 | 90870649 | L1MB4 | LINE | 96 |  | chr5 | 90869489 | 90869589 | 100 |  | U | 964 |  | -4 | 9.375 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 45538424 | 45538496 | MIR | SINE | 72 |  | chr5 | 45541932 | 45541997 | 65 |  | D | 3436 |  | 7 | 4.61538461538461 |  | HCOR |  | Intron | HCN1 | Intron | HCN1 |  |  |  |  |  |  |  |  | 1
chr5 | 38367409 | 38367597 | L1MC1 | LINE | 188 |  | chr5 | 38366585 | 38366717 | 132 |  | U | 692 |  | 56 | 3.937007874015752 |  | HCOR |  | Intron | EGFLAM | Intron | EGFLAM |  |  |  |  |  |  |  |  | 1
chr5 | 38335436 | 38335533 | MSTB | LTR | 97 |  | chr5 | 38334327 | 38334403 | 76 |  | U | 1033 |  | 21 | 1.315789473684215 |  | HCOR |  | Intron | EGFLAM | Intron | EGFLAM |  |  |  |  |  |  |  |  | 1
chr5 | 37886663 | 37886769 | MER58B | DNA | 106 |  | chr5 | 37888436 | 37888515 | 79 |  | D | 1667 |  | 27 | 2.531645569620256 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 162804722 | 162804822 | LTR40B | LTR | 100 |  | chr6 | 162803354 | 162803437 | 83 |  | U | 1285 |  | 17 | 6.024096385542165 |  | HCOR |  | Intron | PARK2 | Intron | PARK2 |  |  |  |  |  |  |  |  | 1
chr6 | 159438002 | 159438147 | ALUJB | SINE | 145 |  | chr6 | 159439317 | 159439451 | 134 |  | D | 1170 |  | 11 | 4.477611940298509 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 159343962 | 159344053 | L2 | LINE | 92 |  | chr6 | 159340534 | 159340608 | 75 |  | U | 3354 |  | 17 | 14.66666666666666 |  | HCOR |  | N |  | 5' UTR | RSPH3
chr6 | 154825066 | 154825135 | L1MB8 | LINE | 69 |  | chr6 | 154825845 | 154825903 | 58 |  | D | 710 |  | 11 | 5.172413793103448 |  | HCOR |  | Intron | CNKSR3 | Intron | CNKSR3 |  |  |  |  |  |  |  |  | 1
chr6 | 140264631 | 140264725 | THE1B | LTR | 94 |  | chr6 | 140263744 | 140263824 | 80 |  | U | 807 |  | 14 | 6.25 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 45353472 | 45353633 | L1PA7 | LINE | 161 |  | chr6 | 45354266 | 45354422 | 156 |  | D | 633 |  | 5 | 3.846153846153844 |  | HCOR |  | Intron | SUPT3H | Intron | SUPT3H | y | y | y | y | y | y | 2 TFBS - 1 @ 12/13 - 92%, 2 @ 100% |  | 1
chr6 | 14780100 | 14780198 | MLT1J2 | LTR | 98 |  | chr6 | 14781728 | 14781826 | 98 |  | D | 1530 |  | 0 | 4.081632653061229 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 93346321 | 93346489 | [NAME] | LINE | 169 |  | chr7 | 93344327 | 93344494 | 168 |  | U | 1827 |  | 1 | 4.761904761904767 |  | HCOR |  | N |  | n
chr7 | 73586807 | 73586923 | ALUSX | SINE | 116 |  | chr7 | 73584984 | 73585091 | 107 |  | U | 1716 |  | 9 | 12.14953271028038 |  | HCOR |  | Intron | GTF2IRD1 | Intron | GTF2IRD1 |  |  |  |  |  |  |  |  | 1
chr7 | 70091742 | 70091810 | ALUSX | SINE | 68 |  | chr7 | 70087969 | 70088030 | 61 |  | U | 3712 |  | 7 | 3.278688524590168 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 68910392 | 68910574 | MLT1F1 | LTR | 182 |  | chr7 | 68909792 | 68909972 | 180 |  | U | 420 |  | 2 | 6.111111111111112 |  | HCOR |  | Intron | AUTS2 | Intron | AUTS2 |  |  |  |  |  |  |  |  | 1
chr7 | 35731342 | 35731480 | LTR1 | LTR | 138 |  | chr7 | 35733408 | 35733546 | 138 |  | D | 1928 |  | 0 | 8.695652173913048 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 26598020 | 26598083 | MIR | SINE | 63 |  | chr7 | 26595290 | 26595330 | 40 |  | U | 2690 |  | 23 | 2.5 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr7 | 21340870 | 21341071 | ALUSX | SINE | 201 |  | chr7 | 21342057 | 21342249 | 192 |  | D | 986 |  | 9 | 6.25 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 117675468 | 117675550 | L1M5 | LINE | 83 |  | chr8 | 117672845 | 117672902 | 58 |  | U | 2566 |  | 25 | 10.3448275862069 |  | HCOR |  | N |  | n
chr8 | 108938405 | 108938518 | MIRB | SINE | 113 |  | chr8 | 108939203 | 108939273 | 70 |  | D | 685 |  | 43 | 4.285714285714281 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 107259049 | 107259222 | L1MA1 | LINE | 173 |  | chr8 | 107257876 | 107258037 | 161 |  | U | 1012 |  | 12 | 5.590062111801242 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 96583229 | 96583510 | L1MD1 | LINE | 282 |  | chr8 | 96578249 | 96578523 | 275 |  | U | 4706 |  | 7 | 4.727272727272725 |  | HCOR |  | N |  | n
chr8 | 88531833 | 88531916 | L1MA4 | LINE | 83 |  | chr8 | 88533669 | 88533748 | 79 |  | D | 1753 |  | 4 | 6.329113924050633 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 74261956 | 74262214 | ALUJ | SINE | 259 |  | chr8 | 74261231 | 74261381 | 151 |  | U | 575 |  | 108 | 5.960264900662249 |  | HCOR |  | N |  | n
chr8 | 68279938 | 68280136 | MER30B | DNA | 198 |  | chr8 | 68281492 | 68281669 | 177 |  | D | 1356 |  | 21 | 3.977272727272729 |  | HCOR |  | Intron | ARFGEF1 | Intron | ARFGEF1 |  |  | y | Goes with below |  | y | Goes with below |  | 1
chr8 | 67464579 | 67464671 | ALUY | SINE | 92 |  | chr8 | 67468047 | 67468121 | 74 |  | D | 3376 |  | 18 | 13.51351351351351 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 66109391 | 66109515 | ALUY | SINE | 124 |  | chr8 | 66107340 | 66107465 | 125 |  | U | 1926 |  | -1 | 5.645161290322576 |  | HCOR |  | n |  | n |  |  |  | y | y | y | y | 10/11 = 91% |  | 1
chr8 | 23737103 | 23737244 | ALUJB | SINE | 141 |  | chr8 | 23737906 | 23738033 | 127 |  | D | 662 |  | 14 | 7.14285714285714 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 129715905 | 129716070 | ALUSX | SINE | 165 |  | chr9 | 129714365 | 129714526 | 161 |  | U | 1379 |  | 4 | 4.968944099378881 |  | HCOR |  | Intron | ST6GALNAC4 | E/I | ST6GALNAC4 | y | y |  | y | y |  |  |  | 1
chr9 | 107684477 | 107684587 | L1PA6 | LINE | 110 |  | chr9 | 107685449 | 107685540 | 91 |  | D | 862 |  | 19 | 4.444444444444439 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 103052794 | 103052944 | L2 | LINE | 151 |  | chr9 | 103051096 | 103051236 | 141 |  | U | 1558 |  | 10 | 8.510638297872342 |  | HCOR |  | Intron | PRG-3 | Intron | PRG-3
chr9 | 98314010 | 98314131 | ALUJB | SINE | 121 |  | chr9 | 98312146 | 98312269 | 123 |  | U | 1741 |  | -2 | 5.833333333333335 |  | HCOR |  | Intron | CDC14B | Intron | CDC14B |  |  |  |  |  |  |  |  | 1
chr9 | 84138969 | 84139084 | MLT1H | LTR | 115 |  | chr9 | 84135775 | 84135887 | 112 |  | U | 3082 |  | 3 | 4.46428571428571 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 75871828 | 75871927 | MLT1E | LTR | 99 |  | chr9 | 75872755 | 75872837 | 82 |  | D | 828 |  | 17 | 4.878048780487809 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr9 | 3735822 | 3735900 | ALUSX | SINE | 78 |  | chr9 | 3737382 | 3737448 | 66 |  | D | 1482 |  | 12 | 9.090909090909093 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 134424553 | 134424617 | L1PB1 | LINE | 64 |  | chrX | 134425537 | 134425597 | 60 |  | D | 920 |  | 4 | 6.666666666666665 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 125681305 | 125681392 | MADE1 | DNA | 87 |  | chrX | 125679965 | 125680048 | 83 |  | U | 1257 |  | 4 | 6.024096385542165 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 118491683 | 118491761 | ALUSX | SINE | 78 |  | chrX | 118490735 | 118490804 | 69 |  | U | 879 |  | 9 | 2.898550724637683 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chrX | 118109505 | 118109721 | L1PB3 | LINE | 216 |  | chrX | 118110177 | 118110387 | 210 |  | D | 456 |  | 6 | 6.190476190476191 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr1 | 173071406 | 173071532 | MLT1J1 | LTR | 126 |  | chr1 | 173073528 | 173073639 | 111 |  | D | 1996 |  | 15 | 12.72727272727273 |  | HCOR |  | Intron | RABGAP1L | Intron | RABGAP1L |  |  |  |  |  |  |  |  | 1
chr1 | 48366054 | 48366246 | L1MA9 | LINE | 193 |  | chr1 | 48366613 | 48366781 | 169 |  | D | 367 |  | 24 | 11.30952380952381 |  | HCOR |  | n |  | N
chr10 | 80802267 | 80802403 | L1M4B | LINE | 136 |  | chr10 | 80806255 | 80806331 | 76 |  | D | 3852 |  | 60 | 5.263157894736848 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 66363392 | 66363493 | L1MC1 | LINE | 101 |  | chr10 | 66365329 | 66365408 | 79 |  | D | 1836 |  | 22 | 12.65822784810127 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 12048757 | 12048954 | L1MEE | LINE | 198 |  | chr10 | 12045765 | 12045958 | 194 |  | U | 2799 |  | 4 | 9.79381443298969 |  | HCOR |  | Intron | UPF2 | Intron | UPF2 | y
chr10 | 5937156 | 5937328 | ALUSX | SINE | 172 |  | chr10 | 5937933 | 5938103 | 170 |  | D | 605 |  | 2 | 3.550295857988162 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 129138992 | 129139053 | L1ME2 | LINE | 61 |  | chr12 | 129137312 | 129137354 | 42 |  | U | 1638 |  | 19 | 2.380952380952384 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr12 | 99323619 | 99323689 | MLT1D | LTR | 70 |  | chr12 | 99322154 | 99322210 | 56 |  | U | 1409 |  | 14 | 12.5 |  | HCOR |  | Intron | SLC17A8 | Intron | SLC17A8 |  |  |  |  |  |  |  |  | 1
chr12 | 51797649 | 51797878 | TIGGER1 | DNA | 229 |  | chr12 | 51798978 | 51799200 | 222 |  | D | 1100 |  | 7 | 5.405405405405405 |  | HCOR |  | Intron | SOAT2 | E/I/E | SOAT2 |  |  |  | y | y |  |  |  | 1
chr12 | 14746178 | 14746445 | MLT1A | LTR | 267 |  | chr12 | 14744029 | 14744281 | 252 |  | U | 1897 |  | 15 | 9.836065573770492 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 104458333 | 104458407 | L1MA4A | LINE | 74 |  | chr13 | 104459279 | 104459340 | 61 |  | D | 872 |  | 13 | 13.11475409836066 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr13 | 74186697 | 74186785 | TIGGER1 | DNA | 88 |  | chr13 | 74188038 | 74188100 | 62 |  | D | 1253 |  | 26 | 8.064516129032262 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr14 | 78256409 | 78256533 | L2 | LINE | 125 |  | chr14 | 78254949 | 78255028 | 80 |  | U | 1381 |  | 45 | 12.5 |  | HCOR |  | Intron | NRXN3 | Intron | NRXN3
chr15 | 78065632 | 78065704 | L1MB3 | LINE | 72 |  | chr15 | 78064421 | 78064484 | 63 |  | U | 1148 |  | 9 | 6.349206349206349 |  | HCOR |  | n |  | n |  |  |  |  | y |  |  |  |  | 1
chr15 | 25685205 | 25685512 | LTR32 | LTR | 307 |  | chr15 | 25682441 | 25682737 | 296 |  | U | 2468 |  | 11 | 6.418918918918914 |  | HCOR |  | Intron | OCA2 | Intron | OCA2 |  |  |  |  |  |  |  |  | 1
chr15 | 23733944 | 23734051 | ALUJB | SINE | 107 |  | chr15 | 23733435 | 23733532 | 97 |  | U | 412 |  | 10 | 9.278350515463918 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr16 | 12704700 | 12704794 | ALUSX | SINE | 94 |  | chr16 | 12705332 | 12705407 | 75 |  | D | 538 |  | 19 | 6.666666666666665 |  | HCOR |  | Intron | FLJ11151 | Intron | FLJ11151 |  |  |  |  |  |  |  |  | 1
chr17 | 61821545 | 61821715 | THE1C | LTR | 170 |  | chr17 | 61822568 | 61822715 | 147 |  | D | 853 |  | 23 | 6.338028169014088 |  | HCOR |  | Intron | PRKCA | Intron | PRKCA | y | y |  | y | y |  |  |  | 1
chr17 | 46371243 | 46371340 | L2 | LINE | 98 |  | chr17 | 46367480 | 46367569 | 90 |  | U | 3674 |  | 8 | 11.23595505617978 |  | HCOR |  | N |  | n
chr17 | 38283359 | 38283600 | ALUSG | SINE | 241 |  | chr17 | 38283931 | 38284137 | 206 |  | D | 331 |  | 35 | 5.339805825242716 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr17 | 14835220 | 14835322 | L1ME1 | LINE | 102 |  | chr17 | 14837971 | 14838074 | 103 |  | D | 2649 |  | -1 | 8 |  | HCOR |  | n |  | n |  |  |  | y | Goes with below |  | y | Goes with below |  | 1
chr17 | 10271487 | 10271614 | L1ME1 | LINE | 127 |  | chr17 | 10270487 | 10270600 | 113 |  | U | 887 |  | 14 | 12.61261261261262 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr19 | 15067988 | 15068069 | ALUJO | SINE | 81 |  | chr19 | 15066478 | 15066559 | 81 |  | U | 1429 |  | 0 | 2.469135802469136 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 225191265 | 225191611 | ALUJ | SINE | 347 |  | chr2 | 225189744 | 225190089 | 346 |  | U | 1176 |  | 1 | 4.970760233918126 |  | HCOR |  | N |  | n
chr2 | 145951766 | 145952210 | L1MA2 | LINE | 445 |  | chr2 | 145955138 | 145955579 | 442 |  | D | 2928 |  | 3 | 10.18099547511312 |  | HCOR |  | N |  | n
chr2 | 135959908 | 135960071 | TIGGER1 | DNA | 163 |  | chr2 | 135958412 | 135958537 | 125 |  | U | 1371 |  | 38 | 8.8 |  | HCOR |  | Intron | ZRANB3 | Intron | ZRANB3 |  |  |  |  |  |  |  |  | 2 | chr5:128,591,664-128,591,685 | Diff chr
chr2 | 53791957 | 53792109 | L1MD2 | LINE | 152 |  | chr2 | 53792970 | 53793060 | 90 |  | D | 861 |  | 62 | 4.49438202247191 |  | HCOR |  | Intron | ASB3 | Intron | ASB3 |  |  |  |  |  |  |  |  | 1
chr2 | 2420584 | 2420849 | L1MEE | LINE | 266 |  | chr2 | 2416502 | 2416707 | 206 |  | U | 3877 |  | 60 | 4.36893203883495 |  | HCOR |  | N |  | n
chr20 | 43675216 | 43675332 | MER3 | DNA | 116 |  | chr20 | 43677046 | 43677135 | 89 |  | D | 1714 |  | 27 | 15.73033707865169 |  | HCOR |  | Intron | WFDC9 | Intron | WFDC9 |  |  |  |  |  |  |  |  | 1
chr21 | 45154103 | 45154312 | L1MC4 | LINE | 209 |  | chr21 | 45151945 | 45152094 | 149 |  | U | 2009 |  | 60 | 8.7248322147651 |  | HCOR |  | Intron | ITGB2 | Intron | ITGB2 |  |  |  |  |  |  |  |  | 1
chr21 | 32784584 | 32784724 | L1MB2 | LINE | 140 |  | chr21 | 32785506 | 32785588 | 82 |  | D | 782 |  | 58 | 8.536585365853655 |  | HCOR |  | Intron | C21orf63 | Intron | C21orf63 |  |  |  |  |  |  |  |  | 2 | chr21:32,785,897-32,785,951 | 309
chr22 | 25516544 | 25516671 | L1MB3 | LINE | 127 |  | chr22 | 25515769 | 25515884 | 115 |  | U | 660 |  | 12 | 17.39130434782609 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 167521816 | 167522007 | L1ME3 | LINE | 191 |  | chr3 | 167523339 | 167523521 | 182 |  | D | 1332 |  | 9 | 11.53846153846154 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr3 | 84151887 | 84152054 | L1M3D | LINE | 168 |  | chr3 | 84154681 | 84154836 | 156 |  | D | 2627 |  | 12 | 12.25806451612903 |  | HCOR |  | N |  | n
chr3 | 33216963 | 33217057 | MLT1A0-INT | LTR | 95 |  | chr3 | 33215239 | 33215333 | 95 |  | U | 1630 |  | 0 | 10.52631578947368 |  | HCOR |  | Intron | SUSD5 | Intron | SUSD5
chr4 | 175728100 | 175728359 | MSTA | LTR | 259 |  | chr4 | 175731525 | 175731751 | 226 |  | D | 3166 |  | 33 | 6.666666666666665 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 2 | chr9:28,028,344-28,028,363 | Diff chr
chr4 | 159866503 | 159866833 | ALUJ | SINE | 331 |  | chr4 | 159868155 | 159868477 | 323 |  | D | 1322 |  | 8 | 5.642633228840122 |  | HCOR |  | N |  | n
chr4 | 85152243 | 85152358 | L1ME2 | LINE | 115 |  | chr4 | 85151346 | 85151460 | 114 |  | U | 783 |  | 1 | 14.03508771929824 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 68101119 | 68101375 | ALUSX | SINE | 257 |  | chr4 | 68102251 | 68102489 | 239 |  | D | 876 |  | 18 | 5.462184873949583 |  | HCOR |  | N |  | n
chr4 | 45025667 | 45025781 | MER31B | LTR | 114 |  | chr4 | 45024476 | 45024572 | 96 |  | U | 1095 |  | 18 | 9.57446808510638 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr4 | 40166379 | 40166575 | ALUSX | SINE | 196 |  | chr4 | 40166036 | 40166205 | 169 |  | U | 174 |  | 27 | 1.775147928994081 |  | HCOR |  | Intron | RBM47 | Intron | RBM47 |  |  |  |  |  |  |  |  | 1
chr4 | 10516841 | 10517044 | L1PA13 | LINE | 203 |  | chr4 | 10514766 | 10514966 | 200 |  | U | 1875 |  | 3 | 5.500000000000005 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr5 | 12488397 | 12488537 | THE1B | LTR | 140 |  | chr5 | 12487447 | 12487560 | 113 |  | U | 837 |  | 27 | 11.50442477876106 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 139004022 | 139004339 | ALUSG | SINE | 317 |  | chr6 | 139005093 | 139005390 | 297 |  | D | 754 |  | 20 | 5.902777777777779 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 57092502 | 57092694 | L1MC1 | LINE | 192 |  | chr6 | 57090877 | 57091047 | 170 |  | U | 1455 |  | 22 | 7.14285714285714 |  | HCOR |  | Intron | ZNF451 | Intron | ZNF451 |  |  |  |  |  |  |  |  | 1
chr6 | 12356271 | 12356454 | MLT1A | LTR | 183 |  | chr6 | 12354786 | 12354932 | 146 |  | U | 1339 |  | 37 | 3.546099290780147 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr7 | 137745683 | 137745778 | ALUSX | SINE | 95 |  | chr7 | 137743827 | 137743920 | 93 |  | U | 1763 |  | 2 | 1.098901098901095 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 1
chr7 | 116825330 | 116825435 | MER51C | LTR | 105 |  | chr7 | 116827393 | 116827465 | 72 |  | D | 1958 |  | 33 | 6.944444444444442 |  | HCOR |  | Intron | ASZ1 | Intron | ASZ1 |  |  |  |  |  |  |  |  | 1
chr7 | 93327628 | 93327846 | [NAME] | LINE | 219 |  | chr7 | 93323721 | 93323927 | 207 |  | U | 3701 |  | 12 | 9.223300970873783 |  | HCOR |  | N |  | n
chr8 | 105380532 | 105380706 | ALUJ | SINE | 175 |  | chr8 | 105378422 | 105378590 | 169 |  | U | 1942 |  | 6 | 10.6508875739645 |  | HCOR |  | N |  | n
chr8 | 96533701 | 96533866 | KANGA1B | DNA | 166 |  | chr8 | 96531585 | 96531741 | 157 |  | U | 1960 |  | 9 | 6.369426751592355 |  | HCOR |  | N |  | n
chr8 | 89807294 | 89807424 | L1MB4 | LINE | 130 |  | chr8 | 89808824 | 89808934 | 110 |  | D | 1400 |  | 20 | 4.545454545454541 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 78449158 | 78449285 | TIGGER1 | DNA | 127 |  | chr8 | 78452395 | 78452521 | 126 |  | D | 3110 |  | 1 | 10.31746031746031 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 64412780 | 64412942 | MIR | SINE | 162 |  | chr8 | 64413981 | 64414125 | 144 |  | D | 1039 |  | 18 | 15.27777777777778 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 64395028 | 64395115 | HERVL | LTR | 87 |  | chr8 | 64390478 | 64390565 | 87 |  | U | 4463 |  | 0 | 2.298850574712641 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr8 | 21554341 | 21554682 | L2 | LINE | 342 |  | chr8 | 21556700 | 21557008 | 309 |  | D | 2018 |  | 33 | 9.477124183006536 |  | HCOR |  | N |  | n
chr9 | 118789399 | 118789546 | MSTA | LTR | 147 |  | chr9 | 118787485 | 118787632 | 147 |  | U | 1767 |  | 0 | 12.24489795918368 |  | HCOR |  | Intron | ASTN2 | Intron | ASTN2 |  |  |  |  |  |  |  |  | 1
chrX | 152250274 | 152250336 | MLT1A1 | LTR | 62 |  | chrX | 152249677 | 152249722 | 45 |  | U | 552 |  | 17 | 4.444444444444439 |  | HCOR |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chrX | 130374150 | 130374280 | L1PREC2 | LINE | 130 |  | chrX | 130377571 | 130377675 | 104 |  | D | 3291 |  | 26 | 5.769230769230771 |  | HCOR |  | n |  | n |  |  |  |  | y | y |  |  |  | 2 | chr3:19,296,770-19,296,793 | Diff chr
chr1 | 191012776 | 191012959 | MER20 | DNA | 184 |  | chr1 | 191013890 | 191013980 | 91 |  | D | 931 |  | 93 | 6.593406593406592 |  | Mammal |  | N |  | N
chr1 | 62058018 | 62058169 | [NAME] | DNA | 151 |  | chr1 | 62056711 | 62056819 | 108 |  | U | 1199 |  | 43 | 12.03703703703703 |  | Mammal |  | Intron | INADL | Intron | INADL |  |  |  | y | y |  |  |  | 1
chr10 | 79809612 | 79809796 | MER5B | DNA | 184 |  | chr10 | 79807408 | 79807564 | 156 |  | U | 2048 |  | 28 | 12.17948717948718 |  | Mammal |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr10 | 7208306 | 7208376 | CHARLIE7 | DNA | 71 |  | chr10 | 7207043 | 7207113 | 71 |  | U | 1193 |  | 0 | 15.49295774647888 |  | Mammal |  | N |  | N
chr13 | 78730167 | 78730332 | L1MEE | LINE | 166 |  | chr13 | 78733071 | 78733228 | 158 |  | D | 2739 |  | 8 | 4.545454545454541 |  | Mammal |  | N |  | N
chr13 | 34028069 | 34028303 | L2 | LINE | 235 |  | chr13 | 34025529 | 34025718 | 190 |  | U | 2351 |  | 45 | 5.263157894736848 |  | Mammal |  | N |  | N
chr15 | 67835748 | 67835825 | MIRB | SINE | 78 |  | chr15 | 67834485 | 67834551 | 67 |  | U | 1197 |  | 11 | 13.43283582089553 |  | Mammal |  | N |  | n
chr16 | 9839890 | 9840158 | L1PB3 | LINE | 268 |  | chr16 | 9840950 | 9841195 | 245 |  | D | 792 |  | 23 | 6.557377049180324 |  | Mammal |  | Intron | GRIN2A | Intron | GRIN2A |  | y |  |  | y |  |  |  | 1
chr2 | 231957069 | 231957253 | L1ME1 | LINE | 184 |  | chr2 | 231955201 | 231955325 | 124 |  | U | 1744 |  | 60 | 11.29032258064516 |  | Mammal |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 225607806 | 225607880 | L2 | LINE | 75 |  | chr2 | 225609049 | 225609099 | 51 |  | D | 1169 |  | 24 | 7.843137254901967 |  | Mammal |  | Intron | DOCK10 | Intron | DOCK10
chr2 | 215224221 | 215224484 | MER5B | DNA | 263 |  | chr2 | 215225025 | 215225207 | 182 |  | D | 541 |  | 81 | 13.73626373626373 |  | Mammal |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr2 | 41796872 | 41796964 | L2 | LINE | 93 |  | chr2 | 41795324 | 41795399 | 76 |  | U | 1473 |  | 17 | 2.73972602739726 |  | Mammal |  | N |  | n
chr20 | 31252678 | 31252790 | L2 | LINE | 113 |  | chr20 | 31254997 | 31255102 | 106 |  | D | 2207 |  | 7 | 13.20754716981132 |  | Mammal |  | N |  | n
chr3 | 123287743 | 123288175 | L2 | LINE | 433 |  | chr3 | 123286997 | 123287266 | 270 |  | U | 477 |  | 163 | 7.063197026022305 |  | Mammal |  | Intron | CD86 | Intron | CD86
chr3 | 27289309 | 27289453 | L2 | LINE | 145 |  | chr3 | 27290408 | 27290494 | 87 |  | D | 955 |  | 58 | 8.139534883720934 |  | Mammal |  | Intron | NEK10 | Intron | NEK10
chr4 | 120266855 | 120266932 | L2 | LINE | 78 |  | chr4 | 120265501 | 120265554 | 54 |  | U | 1301 |  | 24 | 12.96296296296297 |  | Mammal |  | N |  | n
chr5 | 55705258 | 55705435 | L1MD3 | LINE | 177 |  | chr5 | 55700989 | 55701168 | 179 |  | U | 4090 |  | -2 | 10.91954022988506 |  | Mammal |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 35191804 | 35191892 | L1MB5 | LINE | 88 |  | chr6 | 35193697 | 35193782 | 85 |  | D | 1805 |  | 3 | 3.529411764705881 |  | Mammal |  | n |  | n |  |  |  |  |  |  |  |  |  | 1
chr6 | 23671606 | 23671767 | MER5A | DNA | 161 |  | chr6 | 23672632 | 23672776 | 144 |  | D | 865 |  | 17 | 11.88811188811188 |  | Mammal |  | n |  | n |  |  |  | y | y | y | y | 2 TFBS = 1 @ 11/15 = 73%, 2 @ 13/16 = 81% |  | 1
chr7 | 93315371 | 93315497 | L2 | LINE | 127 |  | chr7 | 93311535 | 93311652 | 118 |  | U | 3719 |  | 9 | 7.627118644067798 |  | Mammal |  | N |  | n
chr7 | 26705707 | 26705819 | CHARLIE1A | DNA | 112 |  | chr7 | 26704072 | 26704174 | 102 |  | U | 1533 |  | 10 | 11.76470588235294 |  | Mammal |  | Intron | SKAP2 | Intron | SKAP2 |  |  |  |  |  |  |  |  | 1
chr8 | 98046004 | 98046119 | [NAME] | LINE | 115 |  | chr8 | 98047427 | 98047512 | 85 |  | D | 1308 |  | 30 | 3.529411764705881 |  | Mammal |  | Intron | PGCP | E/I | PGCP |  |  |  | y | y |  |  |  | 1
Total | 824 |  |  | Avg | 162.0922330097087 |  |  |  | Avg | 142.4563106796116 |  | Upstream | 421 |  |  |  |  |  |  | Intron | 295 | 3' UTR | 11 | 47 | 45 | 22 | 88 | 82 | 21
 |  |  |  | [NAME] | 619 |  |  |  | [NAME] | 584 |  | Downstream | 403 |  |  |  |  |  |  | 3' UTR | 2 | 5' UTR | 5
 |  |  |  | Min | 51 |  |  |  | Min | 37 |  |  |  |  |  |  |  |  |  |  |  | E/I | 4
 |  |  |  | Median | 147 |  |  |  | Median | 127 |  |  |  |  |  |  |  |  |  |  |  | Exon | 2
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | I/E | 4