Spreadsheet: 3bdbeed9-71d3-40a5-b1b5-bcb53a37c25d
Sheet: Sheet1

Table S1: assocations between genetic markers and bacterial load phenotypes | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17 | Unnamed: 18 | Unnamed: 19 | Unnamed: 20
P-values estimated as described in Methods
 |  |  |  | ef |  |  |  | ll |  |  |  | pr |  |  |  | sm |  |  |  | PC1 (all bacteria)
Marker ID | Minor_Allele | MAF |  | minor_allele_coef* | pval_perm_assoc | pval_perm_sex |  | minor_allele_coef* | pval_perm_assoc | pval_perm_sex |  | minor_allele_coef* | pval_perm_assoc | pval_perm_sex |  | minor_allele_coef* | pval_perm_assoc | pval_perm_sex |  | pval (ANOVA)
AttD_1581 | G | 0.3536585365853658 |  | -0.00292299293150815 | 0.996 | 0.222 |  | 0.159756713352707 | 0.516 | 0.787 |  | 0.364584339503482 | 0.171 | 0.537 |  | 0.110163659718119 | 0.54 | 0.261 |  | 0.797261653212711
AttD_180 | C | 0.430379746835443 |  | -0.290476860816753 | 0.319 | 0.602 |  | -0.104952228183857 | 0.64 | 0.509 |  | -0.4177322049108491 | 0.131 | 0.18 |  | -0.062563479211586 | 0.745 | 0.418 |  | 0.28309336867729
BG4_1293 | G | 0.2261904761904762 |  | 0.0317397265516292 | 0.914 | 0.523 |  | -0.16894345071552 | 0.517 | 0.252 |  | 0.00111771662752552 | 0.999 | 0.429 |  | 0.192269617681553 | 0.36 | 0.195 |  | 0.773996013433525
BG4_1419 | T | 0.4565217391304348 |  | 0.192485349115059 | 0.424 | 0.223 |  | 0.319057576287435 | 0.137 | 0.521 |  | 0.08386707131160889 | 0.743 | 0.094 |  | 0.0478761481643047 | 0.787 | 0.419 |  | 0.156842371662683
[NAME] | A | 0.3548387096774194 |  | -0.223569497706902 | 0.375 | 0.47 |  | 0.227123414452315 | 0.314 | 0.103 |  | -0.469170282709455 | 0.065 | 0.676 |  | -0.232150682475614 | 0.164 | 0.449 |  | 0.396596562611841
BG4_1507 | A | 0.4761904761904762 |  | 0.07581585990415869 | 0.737 | 0.357 |  | -0.157616786384265 | 0.486 | 0.279 |  | 0.427383173157511 | 0.109 | 0.665 |  | -0.111016796548008 | 0.498 | 0.969 |  | 0.882072085862923
BG4_762 | T | 0.4767441860465116 |  | 0.375634063836612 | 0.149 | 0.147 |  | -0.0093106315965085 | 0.971 | 0.544 |  | 0.280543297188455 | 0.276 | 0.664 |  | 0.3273289020972081 | 0.04 | 0.094 |  | 0.12685344759282
CecAB_1096 | C | 0.2823529411764706 |  | -0.0688611856812071 | 0.82 | 0.365 |  | -0.149213286540485 | 0.558 | 0.358 |  | 0.00142867493139002 | 0.993 | 0.021 |  | 0.020709471896793 | 0.907 | 0.967 |  | 0.849121417638617
CecAB_2344 | C | 0.4880952380952381 |  | 0.479059233805582 | 0.06 | 0.234 |  | 0.153430662972052 | 0.523 | 0.967 |  | 0.3275510432338311 | 0.215 | 0.229 |  | -0.0717089144012933 | 0.7010000000000001 | 0.184 |  | 0.402032943028585
CecAB_2394 | A | 0.2857142857142857 |  | -0.333418204280992 | 0.268 | 0.964 |  | 0.208053222519386 | 0.433 | 0.757 |  | -0.08910912817499479 | 0.769 | 0.181 |  | 0.170620461079188 | 0.392 | 0.244 |  | 0.954063290567095
CecAB_3759 | T | 0.4555555555555556 |  | -0.1391153177598 | 0.597 | 0.69 |  | 0.0508166140356194 | 0.804 | 0.997 |  | 0.0576176178379049 | 0.809 | 0.283 |  | 0.08663275145907301 | 0.582 | 0.028 |  | 0.698737667708099
CecC_1290 | A | 0.1046511627906976 |  | 0.183415160419308 | 0.685 | 0.372 |  | 0.4680574501142991 | 0.225 | 0.636 |  | 0.0674854462463442 | 0.867 | 0.7010000000000001 |  | 0.0785634232888431 | 0.774 | 0.024 |  | 0.261606135091737
CecC_1354 | T | 0.1379310344827587 |  | 0.166238338001709 | 0.683 | 0.507 |  | -0.14128732603217 | 0.668 | 0.802 |  | 0.0670178987903837 | 0.85 | 0.682 |  | 0.0496805595992107 | 0.843 | 0.329 |  | 0.558528197045252
CecC_1660 | A | 0.4534883720930233 |  | 0.08185374962428 | 0.776 | 0.781 |  | -0.0848451719473515 | 0.724 | 0.796 |  | 0.5566408611331211 | 0.026 | 0.081 |  | -0.208208512938192 | 0.234 | 0.982 |  | 0.764666824644928
Dro63D_1959 | A | 0.07526881720430112 |  | -0.497719074568261 | 0.292 | 0.928 |  | -0.39021927850738 | 0.316 | 0.777 |  | -0.0440861887027536 | 0.909 | 0.203 |  | 0.0420299753753724 | 0.884 | 0.708 |  | 0.93735363459998
Dro63D_2910 | G | 0.4673913043478261 |  | -0.4112143831736451 | 0.111 | 0.806 |  | -0.231721293291762 | 0.285 | 0.159 |  | 0.143286423174223 | 0.594 | 0.644 |  | -0.075150401374956 | 0.659 | 0.9520000000000001 |  | 0.726651350657449
Dro63D_3962 | A | 0.3695652173913043 |  | 0.188290321715938 | 0.468 | 0.514 |  | -0.159533744300937 | 0.51 | 0.515 |  | 0.332099577383427 | 0.207 | 0.908 |  | -0.0922566719597725 | 0.549 | 0.268 |  | 0.594588608682438
DroL_1058 | C | 0.4418604651162791 |  | -0.188264277672629 | 0.455 | 0.264 |  | 0.157014036787837 | 0.494 | 0.728 |  | -0.365596305884084 | 0.143 | 0.38 |  | -0.12597842410606 | 0.439 | 0.643 |  | 0.197985641393554
DroL_1142 | T | 0.1866666666666666 |  | -0.274844872020128 | 0.481 | 0.482 |  | -0.4767210828512831 | 0.125 | 0.007 |  | -0.00437732397378193 | 0.989 | 0.129 |  | -0.207831977950431 | 0.372 | 0.261 |  | 0.550541978150183
DroL_1588 | A | 0.45 |  | -0.0239556817332299 | 0.936 | 0.639 |  | 0.193821367018587 | 0.409 | 0.718 |  | 0.08300091550998101 | 0.746 | 0.9380000000000001 |  | 0.0584347761311127 | 0.719 | 0.275 |  | 0.858317142533742
DroL_393 | T | 0.3043478260869565 |  | 0.0716458400509923 | 0.8160000000000001 | 0.447 |  | -0.118186011246905 | 0.631 | 0.6920000000000001 |  | -0.0563913369010454 | 0.843 | 0.5660000000000001 |  | 0.0131377153636226 | 0.94 | 0.012 |  | 0.944735223956531
Drs_201 | G | 0.1318681318681318 |  | -0.372474130583017 | 0.331 | 0.26 |  | -0.506719109998386 | 0.126 | 0.25 |  | 0.00366505562419492 | 0.992 | 0.85 |  | 0.020326024610681 | 0.928 | 0.7010000000000001 |  | 0.353294382081599
Drs_666 | G | 0.06521739130434778 |  | -0.101989822923589 | 0.842 | 0.157 |  | -0.564139106651514 | 0.213 | 0.02 |  | 0.476423335409169 | 0.365 | 0.673 |  | 0.129619274633745 | 0.695 | 0.363 |  | 0.978421562932735
ECSIT_1367 | G | 0.1739130434782609 |  | 0.06394391232650201 | 0.849 | 0.585 |  | -0.0589204305198066 | 0.862 | 0.63 |  | -0.0102690525018377 | 0.975 | 0.862 |  | 0.0488420278479576 | 0.812 | 0.843 |  | 0.7964485706007
ECSIT_1441 | G | 0.1046511627906976 |  | -0.16918384414152 | 0.686 | 0.877 |  | 0.5313783945053411 | 0.15 | 0.879 |  | 0.386700862071466 | 0.365 | 0.089 |  | 0.467253485631121 | 0.098 | 0.395 |  | 0.147800688823963
[NAME] | T | 0.1 |  | 0.169632044916515 | 0.6890000000000001 | 0.145 |  | -0.0555331162771724 | 0.872 | 0.242 |  | -0.0956427051692833 | 0.846 | 0.378 |  | -0.0843249603682613 | 0.774 | 0.354 |  | 0.880662299330067
ECSIT_2471 | G | 0.2619047619047619 |  | 0.254098436852135 | 0.39 | 0.236 |  | 0.19800045666456 | 0.426 | 0.427 |  | 0.290593320573827 | 0.318 | 0.099 |  | 0.152079422186184 | 0.451 | 0.058 |  | 0.364950548615624
GNBP3_160 | T | 0.3928571428571429 |  | 0.198511138746324 | 0.468 | 0.106 |  | 0.430051011748953 | 0.054 | 0.065 |  | -0.366695990328627 | 0.173 | 0.027 |  | 0.214123963589847 | 0.218 | 0.011 |  | 0.55909759515782
GNBP3_1642 | T | 0.1573033707865169 |  | -0.124117744675338 | 0.738 | 0.855 |  | 0.0623190461460656 | 0.853 | 0.023 |  | -0.09579613867446901 | 0.79 | 0.781 |  | -0.0582662415011733 | 0.801 | 0.296 |  | 0.809177764135096
GNBP3_452 | G | 0.3690476190476191 |  | 0.0796931061405293 | 0.759 | 0.529 |  | 0.481945200680677 | 0.037 | 0.32 |  | 0.115781131200204 | 0.639 | 0.113 |  | 0.241018764165071 | 0.185 | 0.016 |  | 0.141147248719007
GNBP3_679 | T | 0.2467532467532467 |  | 0.213512022575248 | 0.517 | 0.25 |  | -0.0889590194481858 | 0.747 | 0.582 |  | -0.155126044239803 | 0.652 | 0.9590000000000001 |  | -0.229138441947565 | 0.253 | 0.653 |  | 0.248450718345073
GNBP3_701 | G | 0.2666666666666667 |  | -0.118284342311511 | 0.716 | 0.812 |  | -0.0371475579992495 | 0.902 | 0.062 |  | -0.138958878610457 | 0.653 | 0.633 |  | -0.164151152240074 | 0.397 | 0.191 |  | 0.70664928087641
GNBP75D_1041 | A | 0.3095238095238095 |  | -0.16020831151592 | 0.577 | 0.407 |  | 0.23663555870204 | 0.343 | 0.18 |  | 0.849950652058951 | 0.001 | 0.788 |  | 0.423774002295442 | 0.019 | 0.846 |  | 0.025122924446802
GNBP75D_1209 | A | 0.3614457831325302 |  | -0.124412805090368 | 0.653 | 0.5680000000000001 |  | 0.241677480919728 | 0.3 | 0.122 |  | 0.7450606625025481 | 0.01 | 0.836 |  | 0.316513508992034 | 0.067 | 0.52 |  | 0.0557040789634803
GNBP75D_2330 | A | 0.4567901234567902 |  | 0.116462301691774 | 0.6890000000000001 | 0.917 |  | -0.158103027787812 | 0.499 | 0.04 |  | -0.237977739220887 | 0.361 | 0.308 |  | -0.3988022297382831 | 0.023 | 0.992 |  | 0.226470107766417
GNBP75D_2620 | A | 0.08045977011494254 |  | -0.0974264349407994 | 0.837 | 0.203 |  | 0.357088012682662 | 0.4 | 0.234 |  | -0.164967137946872 | 0.725 | 0.806 |  | -0.202500416079215 | 0.533 | 0.103 |  | 0.9826570474992
GNBP75D_3350 | G | 0.4878048780487805 |  | -0.0966878926069422 | 0.727 | 0.754 |  | -0.0754735304661486 | 0.757 | 0.495 |  | -0.6213108590875971 | 0.021 | 0.975 |  | -0.343014582652926 | 0.05 | 0.916 |  | 0.120050469983007
GNBP75D_3386 | A | 0.4404761904761905 |  | -0.06954121832002601 | 0.807 | 0.505 |  | 0.0952247143432738 | 0.67 | 0.1 |  | 0.75434004283648 | 0.004 | 0.967 |  | 0.259765578513382 | 0.118 | 0.556 |  | 0.286953086270964
GNBP75D_3486 | A | 0.3222222222222222 |  | 0.0661525496620165 | 0.798 | 0.894 |  | 0.441621526473704 | 0.058 | 0.102 |  | 0.092552308278099 | 0.732 | 0.638 |  | 0.187821729306555 | 0.277 | 0.749 |  | 0.145143873729977
GNBP75D_3696 | A | 0.4 |  | 0.017941843893498 | 0.9430000000000001 | 0.529 |  | -0.0113768737973955 | 0.968 | 0.017 |  | 0.75046921503812 | 0.001 | 0.651 |  | 0.492484505730838 | 0.006 | 0.992 |  | 0.0375628145773537
GNBP75D_3768 | T | 0.4404761904761905 |  | 0.134813491437259 | 0.65 | 0.679 |  | 0.0816125984017692 | 0.727 | 0.133 |  | 0.7736792381012321 | <0.0001 | 0.49 |  | 0.350861107618238 | 0.03 | 0.776 |  | 0.0259416873235959
GNBP75D_4856 | G | 0.3855421686746988 |  | -0.4208100282228031 | 0.121 | 0.866 |  | 0.0412254558656114 | 0.855 | 0.881 |  | 0.786637117264909 | 0.004 | 0.575 |  | -0.00754159486331595 | 0.967 | 0.746 |  | 0.370122311134159
ird5_1161 | G | 0.1195652173913043 |  | -0.231577062529626 | 0.575 | 0.867 |  | -0.365119047961375 | 0.293 | 0.012 |  | -0.567325715793746 | 0.115 | 0.436 |  | -0.111307632116054 | 0.66 | 0.895 |  | 0.279272688711048
ird5_1273 | C | 0.06666666666666665 |  | 0.465838052545088 | 0.381 | 0.127 |  | -0.142535433436893 | 0.756 | 0.653 |  | -0.262618074220071 | 0.597 | 0.464 |  | -0.416905687228017 | 0.217 | 0.672 |  | 0.388125506194784
ird5_1624 | C | 0.1555555555555556 |  | 0.095056971551429 | 0.796 | 0.706 |  | -0.173316992168931 | 0.5710000000000001 | 0.102 |  | -0.486436045628525 | 0.166 | 0.903 |  | -0.164117844459686 | 0.465 | 0.986 |  | 0.302341920766325
ird5_2981 | A | 0.2674418604651163 |  | 0.0169497814845124 | 0.9560000000000001 | 0.249 |  | 0.432073032159792 | 0.075 | 0.211 |  | -0.195319671650681 | 0.497 | 0.842 |  | 0.236138383880628 | 0.192 | 0.192 |  | 0.882628427110724
ird5_443 | A | 0.0674157303370787 |  | -0.108840692220268 | 0.8280000000000001 | 0.631 |  | 0.237303089451437 | 0.582 | 0.871 |  | 0.346170124223201 | 0.495 | 0.998 |  | -0.320272595818409 | 0.363 | 0.288 |  | 0.834692060270932
PGRPLA_1071 | C | 0.1744186046511628 |  | -0.171666439914472 | 0.594 | 0.904 |  | -0.0698421119804804 | 0.8180000000000001 | 0.031 |  | 0.0484623351276929 | 0.886 | 0.042 |  | -0.127888371281883 | 0.582 | 0.6880000000000001 |  | 0.687799760995883
PGRPLA_1591 | C | 0.09195402298850575 |  | 0.8814319208667241 | 0.058 | 0.343 |  | -0.246370777835443 | 0.522 | 0.375 |  | 1.01718692388499 | 0.021 | 0.041 |  | 0.310333210512099 | 0.307 | 0.431 |  | 0.145625052348551
PGRPLA_3020 | G | 0.1666666666666666 |  | 0.00915846053382143 | 0.974 | 0.9530000000000001 |  | -0.263728181204463 | 0.383 | 0.023 |  | 0.124433830618646 | 0.72 | 0.746 |  | 0.0647203773857158 | 0.793 | 0.802 |  | 0.564974235998127
PGRPLA_3481 | T | 0.05555555555555558 |  | 0.145059631310348 | 0.808 | 0.913 |  | -0.401481216236217 | 0.393 | 0.197 |  | 0.0971356394170566 | 0.859 | 0.604 |  | -0.303902365489433 | 0.414 | 0.454 |  | 0.226873369650603
PGRPLA_3707 | G | 0.0957446808510638 |  | -0.0521211484241661 | 0.909 | 0.614 |  | -0.140717280546368 | 0.722 | 0.309 |  | 0.148971252673609 | 0.712 | 0.424 |  | 0.0627332677336855 | 0.8240000000000001 | 0.93 |  | 0.865592902714316
PGRPLA_410 | T | 0.1063829787234043 |  | 0.40665904266323 | 0.325 | 0.338 |  | 0.635832010396785 | 0.069 | 0.994 |  | 0.142116286451248 | 0.73 | 0.97 |  | 0.373870058869044 | 0.165 | 0.48 |  | 0.242928718573491
PGRPLA_4256 | T | 0.1797752808988764 |  | 0.262806214616703 | 0.422 | 0.769 |  | -0.0250028680251665 | 0.927 | 0.853 |  | 0.360046625316633 | 0.278 | 0.284 |  | 0.5072627614524541 | 0.012 | 0.711 |  | 0.298226721119907
PGRPLB_1131 | A | 0.08602150537634412 |  | 0.496433919898066 | 0.278 | 0.489 |  | -0.266762635227103 | 0.483 | 0.022 |  | 0.208776344054392 | 0.638 | 0.849 |  | -0.0897847166903154 | 0.78 | 0.344 |  | 0.479585568115339
PGRPLB_1246 | A | 0.07526881720430112 |  | -0.325927618089965 | 0.507 | 0.285 |  | -0.333759651973015 | 0.41 | 0.028 |  | 0.0459192815873829 | 0.924 | 0.166 |  | -0.4080196852989411 | 0.203 | 0.82 |  | 0.351575705399132
PGRPLB_1408 | C | 0.2823529411764706 |  | -0.614066651802408 | 0.024 | 0.387 |  | 0.0137013272294105 | 0.9590000000000001 | 0.011 |  | 0.473376690945808 | 0.104 | 0.496 |  | 0.171305757022767 | 0.37 | 0.683 |  | 0.828373027909389
PGRPLB_21 | T | 0.3209876543209876 |  | 0.0432256709476729 | 0.88 | 0.607 |  | 0.063968692394764 | 0.789 | 0.705 |  | 0.0975589688174106 | 0.728 | 0.6970000000000001 |  | 0.376668303826615 | 0.047 | 0.715 |  | 0.533811433145835
PGRPLB_381 | T | 0.06097560975609762 |  | -0.465651409226475 | 0.403 | 0.266 |  | 0.290182640140166 | 0.5660000000000001 | 0.099 |  | -0.416939725130469 | 0.442 | 0.877 |  | 0.0516198535200083 | 0.881 | 0.614 |  | 0.458459440996303
PGRPLB_5939 | T | 0.3333333333333334 |  | -0.174575206660246 | 0.534 | 0.514 |  | -0.192274454656859 | 0.407 | 0.504 |  | 0.124293324618125 | 0.663 | 0.899 |  | -0.0696946789877496 | 0.7020000000000001 | 0.713 |  | 0.338752935868677
PGRPLC_131 | C | 0.4578313253012049 |  | -0.0644910829078194 | 0.809 | 0.366 |  | -0.328217828071909 | 0.166 | 0.6970000000000001 |  | -0.250734826552231 | 0.351 | 0.324 |  | -0.0612414533639358 | 0.717 | 0.852 |  | 0.108311833446804
PGRPLC_206* | CC | 0.2272727272727273 |  | 0.34488303433701 | 0.26 | 0.052 |  | -0.0514015274093627 | 0.867 | 0.623 |  | 0.0822798617110524 | 0.797 | 0.196 |  | 0.0377870716797238 | 0.834 | 0.397 |  | 0.879944255537925
PGRPLC_3265 | A | 0.1176470588235294 |  | 0.356597488494146 | 0.404 | 0.6980000000000001 |  | -0.187707144763166 | 0.607 | 0.501 |  | 0.135439419253957 | 0.73 | 0.191 |  | 0.08140874983692639 | 0.768 | 0.253 |  | 0.49963170521351
PGRPLC_345 | C | 0.3902439024390244 |  | -0.196150437469396 | 0.471 | 0.473 |  | -0.241430678828833 | 0.326 | 0.326 |  | -0.329992190480115 | 0.213 | 0.401 |  | -0.222668441427238 | 0.228 | 0.216 |  | 0.0803500865038115
PGRPLC_465 | T | 0.1149425287356322 |  | 0.412913623567748 | 0.317 | 0.374 |  | -0.288512480754845 | 0.409 | 0.492 |  | 0.0396279294983206 | 0.934 | 0.937 |  | -0.318818662765211 | 0.206 | 0.53 |  | 0.631229801437463
PGRPLC_5624 | T | 0.05555555555555558 |  | -0.132368486867584 | 0.8220000000000001 | 0.088 |  | -0.941283651487242 | 0.05 | 0.969 |  | -0.471105772257552 | 0.4 | 0.354 |  | -0.9638084026954821 | 0.01 | 0.45 |  | 0.0195960021976073
PGRPLC_597 | A | 0.15 |  | -0.646044587295987 | 0.08700000000000001 | 0.011 |  | -0.204959268916844 | 0.539 | 0.228 |  | -0.147249922668848 | 0.708 | 0.897 |  | -0.336305159202014 | 0.18 | 0.6940000000000001 |  | 0.0836401015265681
PGRPLC_6230 | A | 0.3488372093023255 |  | -0.0435827365327542 | 0.866 | 0.214 |  | -0.238119442950915 | 0.318 | 0.352 |  | -0.213195149891528 | 0.431 | 0.776 |  | 0.0481901079516861 | 0.784 | 0.381 |  | 0.662968568383352
PGRPLC_6635 | C | 0.2333333333333333 |  | -0.008834318608517381 | 0.977 | 0.726 |  | -0.68061195603295 | 0.006 | 0.095 |  | -0.370128658896983 | 0.223 | 0.32 |  | -0.4875439015758981 | 0.01 | 0.683 |  | 0.0121843073386471
PGRPLC_884 | C | 0.4367816091954023 |  | -0.514567073206198 | 0.05 | 0.194 |  | -0.297692261501895 | 0.193 | 0.501 |  | -0.290893965467533 | 0.263 | 0.656 |  | -0.341445135358163 | 0.034 | 0.168 |  | 0.00363484150540312
PGRPLD_1032 | T | 0.08045977011494254 |  | -0.138362433673025 | 0.787 | 0.447 |  | 0.0584307840569213 | 0.873 | 0.149 |  | -0.510485975059786 | 0.294 | 0.197 |  | 0.202560671340759 | 0.497 | 0.207 |  | 0.928534072517248
PGRPLD_2839 | T | 0.08791208791208793 |  | 0.0330305770960426 | 0.9490000000000001 | 0.552 |  | -0.143149378953851 | 0.686 | 0.148 |  | 0.00597431550697167 | 0.989 | 0.515 |  | 0.69596957372513 | 0.017 | 0.265 |  | 0.415976921961122
PGRPLD_3124 | C | 0.2297297297297297 |  | -0.215779231469083 | 0.524 | 0.591 |  | -0.121212556497834 | 0.678 | 0.36 |  | 0.0129730606376337 | 0.973 | 0.137 |  | 0.0945597863095835 | 0.669 | 0.446 |  | 0.810719091617453
PGRPLD_353 | T | 0.1379310344827587 |  | 0.29351357144243 | 0.453 | 0.331 |  | 0.425137323780172 | 0.177 | 0.068 |  | 0.101190346002887 | 0.807 | 0.103 |  | 0.0262755598684884 | 0.899 | 0.287 |  | 0.331620043573983
PGRPLD_4174 | T | 0.1529411764705882 |  | -0.320299394520906 | 0.383 | 0.217 |  | 0.0505415906387402 | 0.867 | 0.577 |  | 0.00734500498548132 | 0.98 | 0.645 |  | 0.272962004404948 | 0.233 | 0.418 |  | 0.566288909019056
PGRPLD_4832 | T | 0.3793103448275862 |  | -0.004820525510590291 | 0.986 | 0.487 |  | -0.0935756551870159 | 0.6990000000000001 | 0.975 |  | 0.059087830617464 | 0.8290000000000001 | 0.8320000000000001 |  | 0.0227459661618731 | 0.916 | 0.901 |  | 0.9835967971736
PGRPLF_1088 | C | 0.0898876404494382 |  | 0.347330449173437 | 0.434 | 0.5760000000000001 |  | 0.0343981919637902 | 0.919 | 0.9390000000000001 |  | 0.474975757322712 | 0.265 | 0.551 |  | 0.2020853045242 | 0.498 | 0.527 |  | 0.963700799322147
PGRPLF_2262 | T | 0.3444444444444444 |  | 0.5875982843240121 | 0.024 | 0.141 |  | -0.17508567893593 | 0.439 | 0.08700000000000001 |  | 0.311330456078609 | 0.231 | 0.81 |  | 0.008039318393194331 | 0.963 | 0.993 |  | 0.371888346448398
PGRPLF_2711 | G | 0.2183908045977011 |  | 0.155408766707123 | 0.663 | 0.163 |  | 0.608460674947439 | 0.02 | 0.013 |  | 0.242214058302152 | 0.417 | 0.834 |  | 0.496727514088779 | 0.024 | 0.964 |  | 0.0419762925054886
PGRPLF_588 | T | 0.125 |  | -0.06866838189835239 | 0.869 | 0.436 |  | -0.6642309343206211 | 0.059 | 0.014 |  | 0.385866882691609 | 0.322 | 0.078 |  | -0.322930581135933 | 0.198 | 0.397 |  | 0.337848938272103
PGRPSB1_1117 | G | 0.1428571428571429 |  | -0.0609632854201341 | 0.87 | 0.806 |  | -0.0630467718749396 | 0.843 | 0.371 |  | 0.438057728577489 | 0.231 | 0.255 |  | 0.0640521132068117 | 0.785 | 0.132 |  | 0.483302648533386
PGRPSB1_1404 | T | 0.4285714285714286 |  | 0.11498216112087 | 0.663 | 0.157 |  | 0.0106054256106054 | 0.964 | 0.6 |  | 0.0683424695211109 | 0.794 | 0.638 |  | 0.0141741390199217 | 0.9490000000000001 | 0.244 |  | 0.476832493075487
PGRPSB1_154 | A | 0.1208791208791209 |  | 0.305787165235495 | 0.462 | 0.888 |  | -0.0612109149823583 | 0.866 | 0.611 |  | 0.445633399638647 | 0.239 | 0.102 |  | -0.0739526908458561 | 0.754 | 0.196 |  | 0.594170133818977
PGRPSB1_573 | C | 0.4772727272727273 |  | -0.10631782309493 | 0.685 | 0.063 |  | -0.124413911378744 | 0.5670000000000001 | 0.021 |  | -0.224847107820963 | 0.412 | 0.007 |  | -0.00499154506647807 | 0.974 | 0.745 |  | 0.477685311796171
PGRPSB1_958 | T | 0.2209302325581395 |  | -0.216711783602922 | 0.512 | 0.66 |  | -0.228468691858096 | 0.425 | 0.9410000000000001 |  | -0.0482521088104606 | 0.874 | 0.131 |  | 0.0320533664672445 | 0.872 | 0.233 |  | 0.640706515741746
PGRPSB2_1062 | G | 0.1975308641975309 |  | -0.000721053503641708 | 0.999 | 0.601 |  | -0.5028723961017381 | 0.084 | 0.9560000000000001 |  | -0.127704475886031 | 0.709 | 0.165 |  | -0.316114352044306 | 0.125 | 0.316 |  | 0.220705683176982
PGRPSB2_1326 | T | 0.1046511627906976 |  | -0.109275184048441 | 0.8210000000000001 | 0.73 |  | -0.7249374780713811 | 0.049 | 0.927 |  | -0.0625923173255087 | 0.88 | 0.123 |  | 0.0596487473050531 | 0.841 | 0.59 |  | 0.394019120119431
PGRPSB2_1429 | C | 0.308641975308642 |  | -0.442903754569352 | 0.119 | 0.012 |  | -0.378778411473631 | 0.117 | 0.399 |  | -0.151500375241272 | 0.57 | 0.871 |  | -0.284354986161487 | 0.118 | 0.745 |  | 0.093824195267007
PGRPSB2_288 | G | 0.0786516853932584 |  | 0.4614497933679481 | 0.349 | 0.07200000000000001 |  | 0.00237431205606335 | 0.997 | 0.728 |  | 0.263407552940607 | 0.587 | 0.788 |  | 0.134757785302547 | 0.624 | 0.389 |  | 0.323400314983184
PGRPSB2_387 | T | 0.1839080459770115 |  | 0.11050651195972 | 0.735 | 0.263 |  | -0.090453979827972 | 0.749 | 0.854 |  | 0.323269227468267 | 0.329 | 0.643 |  | 0.131841953017162 | 0.545 | 0.617 |  | 0.462766000469345
PGRPSB2_529 | A | 0.2777777777777778 |  | 0.0837445445934945 | 0.781 | 0.649 |  | -0.0404415006922548 | 0.871 | 0.835 |  | 0.304831781511154 | 0.275 | 0.309 |  | 0.241525225789189 | 0.213 | 0.812 |  | 0.278292619871757
PGRPSD_1121 | A | 0.1136363636363636 |  | -0.351815114019178 | 0.39 | 0.752 |  | -0.018912766976956 | 0.9520000000000001 | 0.903 |  | -0.166959344243957 | 0.6960000000000001 | 0.019 |  | -0.4402762244531611 | 0.095 | 0.898 |  | 0.262960771745471
PGRPSD_1547 | T | 0.3372093023255814 |  | 0.231822065470243 | 0.398 | 0.884 |  | 0.00244916072645077 | 0.987 | 0.683 |  | 0.0410935819344627 | 0.872 | 0.295 |  | 0.248298296064879 | 0.175 | 0.237 |  | 0.295380860157617
PGRPSD_214 | A | 0.3928571428571429 |  | -0.403304659112021 | 0.134 | 0.068 |  | -0.186709322555864 | 0.417 | 0.726 |  | -0.484425466617487 | 0.065 | 0.989 |  | -0.0280827869510819 | 0.878 | 0.647 |  | 0.105426920528294
PGRPSD_494 | T | 0.2282608695652174 |  | 0.6741187030586321 | 0.02 | 0.784 |  | 0.176064864713261 | 0.485 | 0.626 |  | 0.0681136444049845 | 0.8160000000000001 | 0.464 |  | 0.218224815654638 | 0.249 | 0.17 |  | 0.0369026691162009
PGRPSD_621 | T | 0.07692307692307687 |  | -0.5640420516557171 | 0.26 | 0.174 |  | -0.294283761482497 | 0.455 | 0.638 |  | -1.08814976502456 | 0.019 | 0.188 |  | -0.116607886267795 | 0.6980000000000001 | 0.582 |  | 0.0793979988257263
pll_1214 | T | 0.07777777777777772 |  | -0.111799296968469 | 0.808 | 0.09 |  | 0.172235898528226 | 0.68 | 0.328 |  | 0.0784548994458596 | 0.857 | 0.534 |  | 0.7358686203951671 | 0.008 | 0.91 |  | 0.433577108625984
pll_2099 | C | 0.3132530120481928 |  | 0.121794563392067 | 0.6880000000000001 | 1 |  | -0.150425568775758 | 0.549 | 0.846 |  | -0.245749944085971 | 0.406 | 0.834 |  | -0.479265185675659 | 0.006 | 0.379 |  | 0.348115331724277
pll_2709 | C | 0.4166666666666666 |  | -0.148035780285857 | 0.627 | 0.915 |  | -0.116717359627439 | 0.609 | 0.212 |  | 0.09438546279080501 | 0.704 | 0.131 |  | -0.0976846732909747 | 0.5760000000000001 | 0.859 |  | 0.85026584014404
pll_441 | G | 0.4318181818181818 |  | -0.168451656885495 | 0.529 | 0.236 |  | -0.273815311852083 | 0.243 | 0.419 |  | -0.118389839695981 | 0.653 | 0.856 |  | -0.314247332072562 | 0.055 | 0.088 |  | 0.212945932885584
pll_953 | C | 0.1976744186046512 |  | -0.0493071973068392 | 0.876 | 0.8180000000000001 |  | -0.302431352908635 | 0.308 | 0.376 |  | -0.498478485654572 | 0.126 | 0.92 |  | -0.454969302383317 | 0.027 | 0.848 |  | 0.0590676509679157
Rel_111 | T | 0.1904761904761905 |  | 0.217276683629011 | 0.508 | 0.541 |  | 0.5521307242461111 | 0.076 | 0.247 |  | -0.0253376008943886 | 0.931 | 0.122 |  | -0.0224307493983233 | 0.917 | 0.075 |  | 0.645715946484327
Rel_1344 | T | 0.3414634146341463 |  | 0.512877081431653 | 0.07200000000000001 | 0.112 |  | -0.193050830744688 | 0.447 | 0.297 |  | 0.384380048034194 | 0.183 | 0.419 |  | 0.0862419561652705 | 0.613 | 0.838 |  | 0.415660495735954
Rel_2420 | G | 0.1264367816091954 |  | -0.5672748170947131 | 0.151 | 0.614 |  | 0.00300090512066405 | 0.993 | 0.128 |  | -0.106483524577819 | 0.757 | 0.856 |  | 0.158706310326111 | 0.548 | 0.02 |  | 0.543664235391909
Rel_2881 | A | 0.1910112359550562 |  | -0.00700840052100679 | 0.987 | 0.8220000000000001 |  | -0.0290092045761112 | 0.916 | 0.708 |  | 0.270478799901261 | 0.402 | 0.535 |  | 0.0710951487807578 | 0.747 | 0.4 |  | 0.801726355026461
Rel_4867 | G | 0.186046511627907 |  | -0.371533584011931 | 0.273 | 0.857 |  | -0.232637666442952 | 0.412 | 0.1 |  | 0.5204904828600221 | 0.121 | 0.589 |  | 0.210202363190611 | 0.338 | 0.08700000000000001 |  | 0.465941200390021
Rel_793 | C | 0.1818181818181818 |  | 0.815953150679063 | 0.011 | 0.111 |  | 0.120384393154023 | 0.682 | 0.14 |  | 0.0466016656494764 | 0.902 | 0.242 |  | 0.182575569435664 | 0.401 | 0.32 |  | 0.187403834057883
spz_1741 | C | 0.2471910112359551 |  | -0.409000073547225 | 0.16 | 0.72 |  | -0.472078952228677 | 0.085 | 0.29 |  | -0.154355115888138 | 0.585 | 0.913 |  | -0.244874098243212 | 0.204 | 0.08600000000000001 |  | 0.133485899284645
spz_180 | T | 0.1704545454545454 |  | 0.285700491006863 | 0.402 | 0.431 |  | 0.132508240893065 | 0.68 | 0.381 |  | 0.552653280826634 | 0.107 | 0.965 |  | 0.143202774197807 | 0.532 | 0.9540000000000001 |  | 0.190817643969465
spz_4241 | C | 0.4615384615384616 |  | -0.113431646639544 | 0.673 | 0.022 |  | -0.346719358214888 | 0.125 | 0.9480000000000001 |  | -0.159065194659903 | 0.515 | 0.623 |  | -0.165279194779197 | 0.306 | 0.004 |  | 0.416995468327812
spz_595 | T | 0.1264367816091954 |  | 1.07540902041793 | 0.005 | 0.843 |  | 0.309734411124426 | 0.34 | 0.718 |  | 0.273111353576592 | 0.488 | 0.443 |  | 0.168073392977513 | 0.496 | 0.591 |  | 0.0978102303571961
spz_759 | T | 0.4827586206896551 |  | -0.0796345958039222 | 0.758 | 0.145 |  | -0.0673472757542059 | 0.769 | 0.705 |  | -0.277614642820829 | 0.26 | 0.928 |  | 0.174575829898244 | 0.311 | 0.532 |  | 0.635121126029756
spz_862 | T | 0.3 |  | -0.240604079586847 | 0.368 | 0.379 |  | -0.145693869183231 | 0.58 | 0.9430000000000001 |  | -0.500828187591809 | 0.062 | 0.589 |  | -0.0924593864177736 | 0.613 | 0.721 |  | 0.218416296817951
spz_897 | T | 0.2105263157894737 |  | -0.10442958121681 | 0.756 | 0.062 |  | 0.0128026717919248 | 0.974 | 0.866 |  | 0.0915527793985038 | 0.766 | 0.978 |  | -0.4667372922461751 | 0.031 | 0.222 |  | 0.323420999673753
Toll_1186 | T | 0.05882352941176472 |  | -0.9395083735345321 | 0.098 | 0.057 |  | -0.295076155978535 | 0.547 | 0.147 |  | 0.549696380837946 | 0.302 | 0.001 |  | -0.0496022106941538 | 0.889 | 0.14 |  | 0.630937453552916
Toll_28569 | A | 0.3214285714285714 |  | -0.67803286949455 | 0.012 | 0.632 |  | -0.0160658168104937 | 0.9390000000000001 | 0.13 |  | -0.156067779215019 | 0.583 | 0.734 |  | -0.0998681143206353 | 0.5730000000000001 | 0.513 |  | 0.0840184407574566
Toll_29040 | A | 0.4404761904761905 |  | -0.355406835173241 | 0.191 | 0.982 |  | -0.321748503385008 | 0.181 | 0.8320000000000001 |  | 0.3771732193524021 | 0.142 | 0.777 |  | -0.275800843801706 | 0.11 | 0.105 |  | 0.16456419331038
Toll_40757 | G | 0.426829268292683 |  | -0.314783087655866 | 0.246 | 0.416 |  | -0.162062023951516 | 0.501 | 0.205 |  | -0.310145787970815 | 0.279 | 0.77 |  | 0.00741810396456961 | 0.962 | 0.662 |  | 0.278845464675605
Toll_40862 | T | 0.05681818181818177 |  | 0.9432517930047941 | 0.092 | 0.38 |  | -0.7878863773185281 | 0.11 | 0.626 |  | -0.0165609958434194 | 0.978 | 0.961 |  | -0.0354264723905592 | 0.922 | 0.467 |  | 0.744387329181328
Toll_41582 | A | 0.2142857142857143 |  | 0.31809437380737 | 0.317 | 0.836 |  | 0.0562916448388693 | 0.85 | 0.442 |  | 0.301172957745369 | 0.341 | 0.716 |  | -0.004379237503531971 | 0.984 | 0.9380000000000001 |  | 0.55588085999268
Toll_41851 | G | 0.2380952380952381 |  | -0.384878159559077 | 0.236 | 0.792 |  | -0.0513901960053363 | 0.863 | 0.417 |  | -0.6595956921821371 | 0.033 | 0.9380000000000001 |  | 0.08198082163877479 | 0.655 | 0.596 |  | 0.206248752850693
Toll_705 | A | 0.08139534883720934 |  | 0.49722203698243 | 0.311 | 0.508 |  | 0.287445238911765 | 0.49 | 0.405 |  | 0.113237300735863 | 0.8320000000000001 | 0.17 |  | -0.269143395211488 | 0.386 | 0.411 |  | 0.836177192168133
Toll9_1979 | G | 0.1927710843373494 |  | -0.0174813375936397 | 0.9580000000000001 | 0.123 |  | 0.341014021095959 | 0.225 | 0.387 |  | 0.263012959622226 | 0.447 | 0.268 |  | 0.266046925524101 | 0.228 | 0.199 |  | 0.298287113474702
Toll9_2539 | T | 0.3625 |  | -0.0156877353862748 | 0.961 | 0.645 |  | 0.0642936206092046 | 0.795 | 0.02 |  | -0.146741397122226 | 0.5730000000000001 | 0.843 |  | -0.0164484871692642 | 0.933 | 0.982 |  | 0.635589256581239
Toll9_2920 | A | 0.1279069767441861 |  | 0.0181237149996913 | 0.964 | 0.8240000000000001 |  | 0.53377171902515 | 0.095 | 0.229 |  | 0.338894037475611 | 0.401 | 0.9590000000000001 |  | 0.275642810705168 | 0.271 | 0.224 |  | 0.383903381185467
Toll9_3034 | T | 0.1951219512195121 |  | 0.309222046990042 | 0.347 | 0.307 |  | -0.504763685166665 | 0.082 | 0.02 |  | 0.380035459050504 | 0.248 | 0.991 |  | -0.205513249516235 | 0.354 | 0.453 |  | 0.780709402906618
Toll9_3231 | A | 0.4512195121951219 |  | 0.14478775412042 | 0.615 | 0.955 |  | -0.201339588621879 | 0.379 | 0.558 |  | -0.0412719581997769 | 0.881 | 0.353 |  | 0.07791578488551759 | 0.661 | 0.201 |  | 0.92380401923037
Toll9_3579 | G | 0.3076923076923077 |  | 0.127096950006177 | 0.685 | 0.337 |  | -0.223086215384992 | 0.404 | 0.054 |  | 0.509602514453123 | 0.08700000000000001 | 0.862 |  | -0.145991687899644 | 0.436 | 0.508 |  | 0.738412690758927
Toll9_4634 | T | 0.3589743589743589 |  | -0.471724966696548 | 0.112 | 0.913 |  | 0.0479438050473472 | 0.8230000000000001 | 0.046 |  | -0.472952846285576 | 0.091 | 0.444 |  | 0.0624572085124619 | 0.729 | 0.8270000000000001 |  | 0.247307881988191
Toll9_5137 | A | 0.4 |  | 0.310313136404692 | 0.247 | 0.8170000000000001 |  | -0.217386402770024 | 0.368 | 0.099 |  | 0.454267934752324 | 0.095 | 0.326 |  | -0.141286176215233 | 0.434 | 0.077 |  | 0.602830105071182
Toll9_607 | T | 0.06976744186046513 |  | 1.03922638789182 | 0.036 | 0.244 |  | -0.5351072823905331 | 0.234 | 0.747 |  | 0.294784729916987 | 0.557 | 0.981 |  | -0.0620173328542539 | 0.838 | 0.199 |  | 0.826903600765334
Tsf2_1427 | T | 0.4382022471910112 |  | -0.346977731598851 | 0.194 | 0.515 |  | -0.252898355009685 | 0.248 | 0.98 |  | -0.100759045499475 | 0.704 | 0.846 |  | -0.0605928127072014 | 0.719 | 0.068 |  | 0.187543577383684
Tsf2_2430 | G | 0.1411764705882353 |  | 0.442699660318945 | 0.251 | 0.484 |  | 0.187672814621206 | 0.57 | 0.258 |  | 0.294617401173515 | 0.433 | 0.043 |  | 0.41383366582806 | 0.082 | 0.276 |  | 0.176784699532123
Tsf2_2883 | C | 0.4814814814814815 |  | -0.340757194376589 | 0.219 | 0.293 |  | -0.0440773429565598 | 0.868 | 0.89 |  | -0.0740335354417201 | 0.747 | 0.596 |  | -0.287520876740991 | 0.08600000000000001 | 0.064 |  | 0.388410235098224
Tsf2_3403 | C | 0.4588235294117647 |  | 0.17924352256541 | 0.523 | 0.803 |  | 0.0200948347448035 | 0.927 | 0.463 |  | -0.5171509063917711 | 0.045 | 0.277 |  | -0.250288150239837 | 0.124 | 0.806 |  | 0.613514474425282
tub_2715 | A | 0.05681818181818177 |  | -0.139875679190529 | 0.81 | 0.014 |  | -0.479348487004036 | 0.33 | 0.05 |  | -0.675796982260623 | 0.22 | 0.395 |  | -0.0307164926572123 | 0.924 | 0.354 |  | 0.371584630729274
tub_2866 | A | 0.202247191011236 |  | 0.348439896063963 | 0.285 | 0.001 |  | -0.0326220968514805 | 0.874 | 0.04 |  | 0.223664329213228 | 0.507 | 0.685 |  | 0.313019406921709 | 0.127 | 0.593 |  | 0.316195379712336
 |  |  |  | *effect of replacing the major allele with the minor allele
 |  |  |  | (minor allele - major allele)
*CC = Del, TT = TGTA