Spreadsheet: 7c2d1055-7867-45de-ad60-bf1e7813be98
Sheet: Sheet1

Probe ID | Locus (LT2) | SL1344 Ortholog | SBG Ortholog | Name | COG | [NAME] | Microarray Z Score | LT2 Annotated Function
NTORF2778 | STM2780 | SL2763 | . | pipB2 | COG1357S | -195.59643 | -9.97205 | [NAME] of pipB, putative pentapeptide repeats (8
NTORF1396 | [NAME] | SL1333 | . | sscA | COG0457R | -143.81253 | -5.07441 | Secretion system chaparone
NTORF1404 | STM1407 | SL1341 | . | ssaH | . | -106.55266 | -8.6616 | Secretion system apparatus
ORF02072 | NT01ST1274 | . | . | . | . | -98.20911 | -4.99603 | phage portal protein, lambda family
NTORF1407 | STM1410 | SL1344 | . | . | . | -92.32142 | -5.37797 | putative cytoplasmic protein
NTORF1392 | [NAME] | SL1329 | . | ssaD | . | -63.91483 | -4.23836 | Secretion system apparatus
NTORF1398 | [NAME] | SL1335 | . | sseD | . | -59.56926 | -4.38633 | Secretion system effector
NTORF1048 | STM1051 | SL0991 | . | [NAME] | . | -57.80823 | -5.78396 | Gifsy-2 prophage putative type III secreted protein
NTORF1695 | STM1698 | SL1628 | . | . | . | -51.59562 | -4.25912 | putative inner membrane protein
ORF10004 | ntst01ORF10004 | . | . | . | . | -47.69911 | -3.89087 | ntst01ORF10004
NTORF2284 | STM2287 | SL2256 | . | sseL | . | -43.49836 | -3.79201 | putative cytoplasmic protein
NTORF1395 | STM1398 | SL1332 | . | [NAME] | . | -39.64443 | -3.68139 | Secretion system effector
NTORF1397 | STM1400 | SL1334 | . | sseC | COG5613S | -37.95198 | -6.95089 | Secretion system effector
NTORF1414 | STM1417 | SL1351 | . | ssaP | . | -37.11598 | -3.62184 | Secretion system apparatus
NTORF1085 | STM1088 | SL1027 | . | pipB | COG1357S | -33.9684 | -7.15663 | Pathogenicity island encoded protein: SPI3
NTORF2232 | STM2235 | SL2211 | . | . | . | -30.08939 | -3.39676 | putative phage protein
NTORF1409 | STM1412 | SL1346 | . | ssaL | . | -30.01526 | -6.18623 | Secretion system apparatus
NTORF1416 | [NAME] | SL1353 | . | ssaR | COG4790U | -26.92543 | -3.27761 | Secretion system apparatus: homology with [NAME] of
NTORF1413 | STM1416 | SL1350 | . | ssaO | . | -26.55789 | -3.25533 | Secretion system apparatus
NTORF2237 | STM2240 | SL2216 | . | . | . | -26.21241 | -4.37939 | putative cytoplasmic protein
NTORF1628 | STM1631 | SL1561 | . | sseJ | COG3240IR | -25.2047 | -3.20679 | Salmonella translocated effector: regulated by SPI-2
NTORF2236 | STM2239 | SL2215 | . | . | . | -24.65936 | -5.3178 | putative phage protein homology to antiterminator protein
NTORF2777 | STM2779 | . | . | . | . | -22.8827 | -3.10313 | putative inner membrane protein
NTORF1831 | STM1834 | SL1763 | SBG1690 | yebN | COG1971S | -21.11516 | -2.77782 | putative YebN family transport protein
NTORF2135 | STM2138 | SL2114 | . | . | . | -19.351 | -5.31358 | putative cytoplasmic protein
NTORF1400 | STM1403 | SL1337 | . | sscB | COG0457R | -18.488 | -2.8823 | Secretion system chaparone
NTORF1221 | STM1224 | SL1161 | . | sifA | . | -17.22958 | -5.12902 | lysosomal glycoprotein (lgp)-containing structures replication in macrophages
NTORF1406 | STM1409 | SL1343 | . | ssaJ | COG4669U | -16.70352 | -2.74608 | Secretion system apparatus: homology with the yscJ/mxiJ/prgK
NTORF0782 | STM0782 | SL0759 | SBG0663 | modB | COG4149P | -16.50289 | -2.56403 | ABC superfamily (membrane), molybdate transporter
NTORF1417 | STM1420 | SL1354 | . | ssaS | COG4794U | -16.44907 | -3.71676 | Secretion system apparatus: homology with YscS of
NTORF0558 | STM0558 | SL0548 | . | yfdH | [NAME] | -16.24876 | -3.9761 | putative glycosyltransferase
NTORF1388 | STM1391 | SL1325 | . | ssrB | COG2197TK | -15.64427 | -2.69414 | Secretion system regulator: transcriptonal activator, homologous with
NTORF0969 | STM0972 | SL0909 | . | . | . | -15.46816 | -4.80253 | homologous to secreted protein sopD
NTORF3191 | STM3193 | SL3166 | SBG2786 | . | COG0526OC | -15.42867 | -2.92046 | putative thiol-disulfide isomerase and thioredoxin
NTORF0041 | STM0041 | SL0042 | . | . | COG1501G | -14.99956 | -2.48117 | putative glycosyl hydrolase
ORF08637 | NT01ST5278 | . | . | . | . | -14.46175 | -2.4495 | single stranded DNA binding protein
NTORF2233 | STM2236 | SL2212 | . | . | COG3740R | -13.96891 | -4.60955 | putative phage protein
NTORF3360 | STM3362 | SL3334 | SBG2981 | . | . | -13.96649 | -2.41927 | putative periplasmic protein
NTORF4424 | STM4426 | SL4358 | . | srfJ | COG5520M | -13.80477 | -2.56116 | activated by transcription factor [NAME], similar to
NTORF1412 | STM1415 | SL1349 | . | ssaN | COG1157NU | -13.13872 | -3.21224 | Secretion system apparatus: homology with the YscN
NTORF1415 | STM1418 | SL1352 | . | ssaQ | COG1886NU | -12.77044 | -3.37432 | Secretion system apparatus
ORF05517 | NT01ST3381 | . | . | . | . | -12.75281 | -2.47616 | phage major capsid protein, [NAME] family
NTORF1853 | STM1856 | SL1785 | . | . | COG5562R | -11.81442 | -2.6866 | putative cytoplasmic protein
NTORF2249 | STM2252 | . | . | ccmC | COG0755O | -11.73202 | -2.26803 | ABC superfamily (membrane) heme exporter protein, cytochrome
NTORF2019 | STM2022 | SL1998 | . | cbiN | [NAME] | -11.00834 | -2.2128 | synthesis of vitamin B12 adenosyl cobalamide precursor
NTORF1630 | STM1633 | SL1563 | SBG1467 | . | COG0834ET | -10.7498 | -3.05468 | putative periplasmic binding protein
NTORF1399 | STM1402 | SL1336 | . | sseE | COG1364E | -10.53506 | -2.27127 | Secretion system effector
NTORF1403 | STM1406 | SL1340 | . | ssaG | . | -10.5122 | -2.26894 | Secretion system apparatus
NTORF1262 | STM1265 | SL1200 | SBG1110 | . | COG2197TK,COG2771K | -10.17709 | -2.38825 | putative response regulators consisting of a CheY-like
NTORF4206 | STM4208 | SL4143 | . | . | COG3500R | -10.02609 | -2.13173 | putative cytoplasmic protein
NTORF1301 | STM1304 | SL1239 | SBG1157 | [NAME] | COG3138E | -9.64101 | -2.09775 | arginine succinyltransferase
NTORF1545 | STM1548 | . | . | . | . | -9.04603 | -2.10785 | putative S-adenosylmethionine:tRNA-ribosyltransferase-isomerase
NTORF4169 | STM4171 | SL4110 | SBG3645 | yjaH | . | -9.04126 | -2.88685 | putative inner membrane protein
NTORF0082 | [NAME] | SL0083 | SBG0068 | . | . | -8.70795 | -2.067 | putative secreted protein
NTORF1401 | STM1404 | SL1338 | . | sseF | . | -8.60624 | -4.92699 | Secretion system effector
NTORF2231 | STM2234 | SL2210 | . | . | . | -8.49731 | -2.16053 | putative tail fiber assembly protein
NTORF2735 | STM2737 | SL2707 | . | . | . | -7.89608 | -3.20282 | Fels-2 prophage: similar to protein in phage
NTORF1390 | [NAME] | SL1327 | . | ssaB | . | -7.77311 | -3.91877 | Secretion system apparatus
NTORF2872 | STM2874 | SL2854 | SBG2495 | prgH | . | -7.73304 | -2.20278 | cell invasion protein
NTORF1219 | STM1222 | SL1159 | SBG1060 | potD | COG0687E | -7.68653 | -2.83383 | ABC superfamily (peri_perm), spermidine/putrescine transporter
NTORF1946 | STM1949 | SL1878 | SBG1779 | yecF | . | -7.64636 | -2.99279 | putative cytoplasmic protein
NTORF1408 | STM1411 | SL1345 | . | ssaK | . | -7.40146 | -3.64656 | Secretion system apparatus
NTORF0270 | STM0270 | SL0264 | . | . | COG4455R | -7.2954 | -2.7069 | putative cytoplasmic protein
NTORF4050 | [NAME] | SL4001 | SBG3565 | . | COG1593G | -7.22902 | -2.15476 | putative C4-dicarboxylate transport system
NTORF2238 | STM2241 | SL2217 | . | sspH2 | COG4886S | -7.07438 | -3.20655 | Leucine-rich repeat protein, induced by the SPI-2
NTORF0719 | STM0719 | SL0700 | . | . | COG0562M | -7.05664 | -3.11376 | putative UDP-galactopyranose mutase
NTORF2444 | STM2447 | SL2410 | SBG2243 | . | . | -6.53018 | -2.22216 | putative outer membrane lipoprotein
ORF04449 | NT01ST2746 | . | . | . | . | -6.46897 | -2.8551 | PTS system, fructose-specific IIA/FPR component
NTORF1774 | STM1777 | SL1705 | SBG1636 | [NAME] | COG0373H | -6.07814 | -2.27848 | glutamyl tRNA reductase
NTORF2234 | STM2237 | SL2213 | . | . | . | -5.95415 | -3.73484 | putative inner membrane protein
NTORF1410 | STM1413 | SL1347 | . | ssaM | . | -5.95344 | -2.57227 | Secretion system apparatus
[NAME] | STM0867 | SL0843 | SBG0745 | . | COG0561R | -5.90906 | -2.38431 | putative hydrolase
NTORF1418 | STM1421 | SL1355 | . | ssaT | COG4791U | -5.89033 | -3.61702 | Secretion system apparatus: homology with YscT of
NTORF2726 | STM2728 | SL2700 | . | . | . | -5.70128 | -2.66879 | Fels-2 prophage: hypothetical protein
NTORF4155 | [NAME] | SL4096 | . | . | . | -5.54226 | -2.48109 | putative cytoplasmic protein
[NAME] | STM0385 | SL0380 | SBG0341 | yaiC | [NAME]T | -5.29723 | -3.46773 | putative diguanylate cyclase/phosphodiesterase domain 1
NTORF2214 | STM2217 | SL2194 | SBG2032 | yejB | COG4174R | -5.24123 | -3.5351 | putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component
NTORF1643 | STM1646 | SL1576 | [NAME] | ydbH | . | -5.07837 | -2.30006 | putative periplasmic protein
NTORF1881 | [NAME] | SL1818 | [NAME] | eda | [NAME] | -5.02803 | -2.24378 | multifunctional:2-keto-3-deoxygluconate 6-phosphate aldolase 2-keto-4-hydroxyglutarate aldolase; oxaloacetate decarboxylase
NTORF4408 | STM4410 | SL4343 | SBG3854 | ytfN | COG2911S | -4.93904 | -1.98988 | putative periplasmic protein
NTORF1860 | STM1863 | SL1794 | . | . | . | -4.806 | -2.17045 | putative inner membrane protein
NTORF1350 | STM1353 | SL1287 | . | ydiR | COG2025C | -4.7922 | -2.16662 | putative electron transfer flavoprotein
NTORF4545 | [NAME] | SL4478 | SBG3960 | yjjQ | COG2197TK | -4.75252 | -3.30813 | putative transcriptional regulator (LuxR/UhpA family)
NTORF0418 | STM0418 | SL0412 | [NAME] | nusB | COG0781K | -4.68005 | -2.72946 | transcription termination L factor
NTORF0528 | [NAME] | SL0521 | . | allD | COG2055C | -4.60281 | -2.19219 | ureidoglycolate dehydrogenase
ORF03388 | NT01ST2099 | . | . | . | . | -4.57846 | -2.12228 | sapA
NTORF1861 | STM1864 | SL1795 | . | . | COG1495O | -4.57277 | -2.6321 | putative inner membrane protein
NTORF4232 | STM4234 | SL4171 | SBG3679 | ubiA | COG0382H | -4.47519 | -2.11338 | p-hydroxybenzoate: octaprenyltransferase
NTORF4393 | STM4395 | SL4328 | SBG3839 | yifZ | COG0697GER | -4.39765 | -2.25738 | putative permease
ORF07059 | NT01ST4317 | . | . | . | . | -4.17265 | -1.98813 | hypothetical protein
NTORF3148 | STM3150 | SL3124 | SBG2748 | hypO | COG1740C | -4.0978 | -1.9668 | putative Ni/Fe hydrogenases, small subunit
ORF05606 | NT01ST3437 | . | . | . | . | -4.0738 | -2.4809 | putative Superfamily I DNA and RNA helicase
NTORF2659 | STM2661 | SL2621 | SBG2375 | yfiH | COG1496S | -4.04846 | -2.49224 | putative inner membrane protein
NTORF0036 | STM0036 | SL0037 | SBG0036 | . | [NAME] | -3.99697 | -2.83586 | putative arylsulfatase regulatory protein
NTORF1411 | STM1414 | SL1348 | . | ssaV | COG4789U | -3.97975 | -2.81792 | Secretion system apparatus: homology with the LcrD
NTORF3231 | STM3233 | SL3205 | [NAME] | yqjG | COG0435O | -3.84035 | -2.04121 | putative glutathione S-transferase
NTORF1439 | STM1442 | SL1374 | SBG1266 | ydhJ | COG1566V | -3.78558 | -2.3465 | putative multidrug resistance efflux pump
NTORF0317 | STM0317 | SL0313 | [NAME] | gpt | COG0503F | -3.77844 | -2.76193 | guanine-hypoxanthine phosphoribosyltransferase
ORF02455 | [NAME] | . | . | . | . | -3.77539 | -2.44544 | PotD
ORF10005 | ntst01ORF10005 | . | . | . | . | -3.7696 | -2.55389 | ntst01ORF10005
NTORF0159 | STM0159 | SL0160 | SBG3247 | . | COG3183V | -3.75303 | -2.34232 | putative restriction endonuclease
ORF03161 | NT01ST1948 | . | . | . | . | -3.72481 | -2.56173 | hypothetical protein
NTORF3713 | STM3715 | SL3681 | SBG3297 | rfaZ | . | -3.66555 | -1.96751 | lipopolysaccharide core biosynthesis
NTORF3766 | STM3768 | SL3733 | SBG3340 | . | COG1921E | -3.66322 | -2.22739 | putative selenocysteine synthase [L-seryl-tRNA(Ser) selenium transferase
NTORF1389 | STM1392 | SL1326 | . | ssrA | COG0642T | -3.63652 | -2.24989 | Secretion system regulator:Sensor component
NTORF2713 | STM2715 | . | . | . | . | -3.57375 | -2.3585 | Fels-2 prophage: probable prophage lysozyme
ORF10003 | ntst01ORF10003 | . | . | . | . | -3.53242 | -2.29308 | ntst01ORF10003
NTORFB0008 | PSLT008 | SLP1_0097 | . | srgC | COG2207K | -3.49245 | -2.22546 | sdiA-regulated geneputative bacterial regulatory helix-turn-helix proteins, araC
NTORF1780 | STM1783 | . | . | . | . | -3.44031 | -2.40081 | peptidyl-tRNA hydrolase
NTORF0975 | STM0978 | SL0915 | SBG0832 | aroA | COG0128E | -3.38316 | -2.44388 | 3-enolpyruvylshikimate-5-phosphate synthetase
NTORF2636 | [NAME] | SL2602 | SBG2356 | rseB | COG3026T | -3.36879 | -2.5161 | anti sigma E (sigma 24) factor, negative
NTORF2467 | STM2470 | SL2433 | . | [NAME] | COG4810E | -3.35053 | -2.07019 | putative carboxysome structural protein, ethanol utilization
NTORF2667 | STM2669 | SL2627 | SBG2384 | tyrA | COG0287E,COG1605E | -3.33582 | -2.24131 | bifunctional: chorismate mutase T prephenate dehydrogenase
NTORF1405 | STM1408 | SL1342 | . | ssaI | . | -3.33319 | -2.06522 | Secretion system apparatus
NTORF3286 | STM3288 | SL3261 | SBG2918 | yhbC | COG0779S | -3.24136 | -2.07889 | putative cytoplasmic protein
NTORF0284 | STM0284 | SL0279 | . | . | . | -3.19676 | -2.31601 | putative shiga-like toxin A subunit
NTORF0398 | STM0398 | SL0393 | SBG0354 | phoR | COG0642T | -3.19507 | -2.34566 | sensory kinase in two-component regulatory system with
NTORF3572 | STM3574 | SL3539 | SBG3167 | yhhM | . | -3.12174 | -2.41271 | putative inner membrane protein
ORF01989 | NT01ST1230 | . | . | . | . | -3.00572 | -2.11391 | glyoxylase II family protein
NTORF4306 | STM4308 | SL4245 | [NAME] | . | COG3381R | -2.98839 | -2.29865 | putative component of anaerobic dehydrogenases
NTORF1978 | STM1981 | SL1910 | SBG1809 | fliR | COG1684NU | -2.962 | -1.96051 | putative flagellar biosynthetic protein
NTORF4184 | STM4186 | SL4121 | . | . | COG4405S | -2.92494 | -2.02069 | putative cytoplasmic protein
NTORF1726 | STM1729 | SL1660 | SBG1591 | yciF | COG3685S | -2.92061 | -2.06088 | putative cytoplasmic protein
NTORF1758 | STM1761 | SL1689 | SBG1619 | [NAME] | COG2181C | -2.91338 | -2.06075 | nitrate reductase 1, cytochrome b(NR), gamma subunit
NTORF1229 | STM1232 | SL1170 | SBG1068 | purB | COG0015F | -2.90911 | -2.00814 | adenylosuccinate lyase
NTORF1230 | STM1233 | SL1171 | SBG1069 | ycfC | COG2915R | -2.78062 | -2.09682 | membrane associated protein of unknown function
NTORF2026 | STM2029 | SL2005 | . | cbiF | COG2875H | -2.74259 | -2.08851 | synthesis of vitamin B12 adenosyl cobalamide precursor
NTORF0352 | STM0352 | . | . | . | . | -2.65293 | -2.03693 | putative cation efflux pump
ORF10009 | ntst01ORF10009 | . | . | . | . | -2.65284 | -2.05903 | ntst01ORF10009
NTORF0290 | STM0290 | SL0285 | . | . | COG5435S | -2.65165 | -2.27766 | putative cytoplasmic protein
NTORF1084 | STM1087 | SL1026 | . | pipA | . | -2.64457 | -1.96295 | Pathogenicity island encoded protein: SPI3
ORF01238 | NT01ST0759 | . | . | . | . | -2.60372 | -2.02282 | C4-dicarboxylate transporter, anaerobic, putative
NTORF3722 | STM3724 | SL3690 | SBG3306 | kdtA | COG1519M | -2.58725 | -2.22419 | 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase)
As annotated by TIGR