Spreadsheet: 159f7e4f-8ed5-4ef1-8bb9-610385d81192
Sheet: Sheet1

Position1 | Locus tag2 | Product description | Nucleotide allele (1,2)3 | Amino acids (1,2)4 | Orientation5 | Fig. 1 branch6 | Reference
70011 | ECs0064 | DNA polymerase II | GTTTT[T/G]GCAGC | Q, P | Forward | 6 | This manuscript
104967 | ECs0094 | MurG | TAAAG[T/C]GACTG | V | Reverse | 1 | 8
269117 | ECs0237 | RhsG core protein with extension | TTTGA[T/C]GGCCG | D | Reverse | 11 | 8
331010 | ECs0313 | hypothetical protein | CCAGC[C/A]CCGCT | G, V | Forward | 12 | 8
385693 | - | - | TCATT[C/A]AGCAG | - | Forward | 3 | This manuscript
421145 | ECs0397 | LacZ | TATGA[C/T]GGAAC | R,H | Reverse | 8 | 8
544618 | ECs0510 | hypothetical protein | AGCCG[A/G]CAGGC | V,A | Forward | 3 | This manuscript
577338 | ECs0538 | Glutaminase | TTAGA[T/C]GCAAA | D | Reverse | 7 | 8
653269 | [NAME] | putative outer membrane protein | TAGCG[G/C]TAATA | G, A | Reverse | 5 | This manuscript
661339 | ECs0600 | bacteriophage N4 receptor, outer membrane subunit | GCGCG[G/C]TCGCG | W, stop | Reverse | 2 | This manuscript
822741 | ECs0739 | endonuclease VIII | TAAGG[C/G]GTTGT | A, G | Reverse | 2 | This manuscript
869577 | ECs0782 | phospho-2-dehydro-3-deoxyheptonate aldolase | TTCCC[C/T]GCTAC | P | Forward | 6 | This manuscript
1107987 | ECs1007 | MukB | AGCGT[C/T]TGAAC | L | Reverse | 9 | 8
1601352 | ECs4561 | Tir | AATCC[A/T]TCATT | E, D | Reverse | 2 | 3
1746040 | ECs1744 | OppB | CCAAA[C/T]TGGGA | L | Reverse | 1 | 8
1907024 | ECs1915 | fumarate/nitrate reduction transcriptional regulator | TACCG[C/T]TTTTC | S, N | Reverse | 2 | 8
2346918 | ECs2375 | hypothetical protein | AACTC[C/T]ACTTT | P, L | Reverse | 9 | 8
2419218 | ECs2442 | PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA | CGCCA[A/G]GCTGC | Y | Forward | 12 | 8
2430431 | ECs2454 | ArgD | [NAME]/A]AGATC | S, F | Forward | 7 | 8
2628757 | ECs2666 | cytoplasmic alpha-amylase | GAGCG[C/T]GCCGA | R | Reverse | 5 | This manuscript
2801004 | ECs2855 | putative glycosyl transferase | TGCGG[T/A]AATAA | T, S | Reverse | 2 | This manuscript
2805501 | ECs2861 | WcaD | AATAC[T/A]GCCAG | A | Forward | 10 | This manuscript
2815868 | [NAME] | putative assembly protein | TTTGA[T/G]CTGCC | D, A | Reverse | 8 | 8
2829494 | ECs2882 | multidrug efflux system subunit MdtA | GTGGT[A/G]GTTAT | V | Forward | 10 | This manuscript
2870838 | ECs2920 | MetG | [NAME]/G]CAAGC | D, G | Forward | 5 | This manuscript
2971752 | ECs3040 | [NAME] | CGCGC[G/A]TACTT | Y | Forward | 2 | This manuscript
3018416 | ECs3078 | nucleoid-associated protein NdpA | TCGGT[T/A]AAATC | L, F | Reverse | 2 | This manuscript
3308237 | ECs3334 | succinyl-diaminopimelate desuccinylase | GTGGT[A/G]GGTGA | V | Forward | 2 | This manuscript
3539266 | ECs3550 | glutamate--cysteine ligase | GTCAG[A/C]TCGGG | D, E | Forward | 3 | This manuscript
3541163 | ECs3552 | fructose-1-phosphatase | GGCAT[C/A]TTCAA | D, Y | Forward | 7 | 8
3576088 | ECs3585 | hypothetical protein | TCCGG[C/A]AGTCA | A, E | Forward | 11 | 8
3702354 | ECs3697 | putative racemase | ACAGC[A/T]TAAAA | M, K | Reverse | 2 | This manuscript
3706765 | - | - | ATTCA[G/A]CAGAT | - | Forward | 12 | This manuscript
3836658 | ECs3826 | hypothetical protein | CGGCT[G/A]CAACG | A, T | Forward | 1 | 8
3891313 | ECs3889 | biopolymer transport protein ExbD | TTCTT[G/A]CCTTC | V | Forward | 3 | This manuscript
4016055 | ECs4006 | putative hydrolase | [NAME]/A]CTGGC | T | Forward | 5 | This manuscript
4086858 | ECs4080 | putative ABC transporter ATP-binding protein YhbG | GCGGC[T/C]TGGGC | L | Reverse | 12 | 8
4299874 | ECs4289 | putative dehydrogenase | GGATC[G/A]TTTAG | N | Forward | 2 | This manuscript
4428520 | ECs4410 | putative oxidoreductase subunit | TCGGG[A/G]AGTCT | F, S | Forward | 11 | This manuscript
4644568 | ECs4614 | EmrD | ACGGT[G/A]TCTCA | V, I | Forward | 5 | This manuscript
4690438 | ECs4656 | hypothetical protein | TGCAC[C/T]ATTCA | W, stop | Reverse | 2 | 8
4705476 | ECs4671 | glucosamine--fructose-6-phosphate aminotransferase | GCGAA[G/A]ACATA | V | Forward | 9 | 8
4831460 | - | - | GGGAA[A/G]GCGTA | - | Forward | 3 | This manuscript
4870245 | - | - | GACAG[A/C]CGTCA | - | Forward | 10 | This manuscript
5090702 | ECs5011 | hypothetical protein | TGCTT[G/A]GCGGT | G,S | Forward | 11 | 8
5272385 | ECs5168 | putative L-ascorbate 6-phosphate lactonase | GCGGC[C/T]AGGTA | W, stop | Reverse | 4 | This manuscript
5293726 | ECs5193 | hypothetical protein | TGAAC[T/G]ACAAG | L, R | Reverse | 8 | 8
5431702 | - | - | ATGAC[A/G]AAAGG | - | Forward | 11 | This manuscript
1Position = Nucleotide position of the SNP based on GenBank accession NC_002695.
2Locus tag = GenBank gene designation. "-" indicates intergenic polymorphisms.
3Nucleotide allele (1,2). Polymorphism alleles are bracketed, with strain Sakai allele first and the alternative allele second.
4Amino acids (1,2): Predicted amino acid residues are indicated in the same order as the polymorphism alleles. Synonymous polymorphisms are indicated by a single amino acid prediction.
5Orientation indicates the direction of the GoldenGate assay primer, with 'Forward' indicating a primer with a 3' end at a higher nucleotide position than its 5' end, based on GenBank accession NC_002695.
6Fig. 1 branch is the lineage branch indicated in Figure 1 predicted by the polymorphism's alternative allele.
Reference