Spreadsheet: 18fb7bc6-5c02-47a8-b11a-72d9623be1fc
Sheet: Sheet1

Table S9.  Regulation of predicted cellulosome associated proteins detected in the R. flavefaciens FD-1 genome. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3
Scaffoldins
ORF Designation | Domain Composition | No. of Clones | Fold Change
ORF03113 | SIGN-COH-DOC (ScaC) | 3 (3) | 4.37 (4.37)
ORF03114 | SIGN-UNK-COH-COH-DOC (ScaA) | 7 (6) | 4.43 (4.43)
[NAME] | SIGN-COH-COH-COH-COH-COH-COH-COH-COH-UNK-COH-UNK-DOC (ScaB) | 18 (18) | 4.55 (4.55)
[NAME] | SIGN-COH-LPXTG (ScaE) | 4 (1) | 1.38 (2.94)
ORF00794 | SIGN-COH-DOC (ScaH) | 3 | 0.95
ORF01453 | SIGN-COH-DOC (similar to ScaE cohesin) | 1 (1) | 4.27 (4.27)
ORF03129 | SIGN-COH-DOC (ScaF) | 2 | 0.47
ORF04069 | SIGN-COH-COH-DOC (ScaJ) | 4 | 0.76
ORF04333 | SIGN-LRR-COH-DOC (ScaI) | 1 | 0.59
[NAME] ORFs
ORF Designation | Domain Composition | No. of Clones | Fold Change
ORF01222 | SIGN-GH11-CBM22-GH10-DOC-CBM22-CE4 | 2 (2) | 63.01 (63.01)
ORF03896 | SIGN-GH11-CBM22-GH10-DOC1-GH11-CE4 | 6 (6) | 50.10 (50.10)
ORF01315 | SIGN-GH11-CBM22-DOC-GH11-CE3 | 5 (5) | 25.32 (25.32)
[NAME] | SIGN-PL11-CBM13-DOC1 | 10 (9) | 10.49 (11.53)
ORF00775 | SIGN-GH11-CBM13-CE1-DOC1 | 2 (2) | 9.79 (9.79)
ORF04165 | SIGN-GH5-UNK-CBM22-DOC1-UNK | 6 (5) | 8.90 (9.05)
ORF03865 | UNK-CBM22-GH10-CBM22-DOC1-GH43-CBM6 | 6 | 8.81
ORF01863 | SIGN-DOC1-GH3 | 1 (1) | 8.79 (8.79)
ORF01913 | SIGN-DOC1-UNK | 1 (1) | 8.59 (8.59)
[NAME] | SIGN-CE3-CBM22-DOC1-CE15 | 10 (6) | 8.56 (11.27)
ORF02389 | SIGN-DOC-UNK-CotH (pfam08757)-UNK | 14 (11) | 7.79 (8.98)
ORF00381 | SIGN-DOC1-UNK | 1 (1) | 7.49 (7.49)
ORF03219 | SIGN-UNK-CE12-CBM13-DOC1-CBM35-CE12 | 8 (8) | 7.32 (7.32)
ORF01133 | SIGN-CBM4-IgX-GH9-DOC1 | 3 (3) | 6.60 (6.60)
ORF03006 | SIGN-UNK-DOC1 | 6 | 6.16
ORF00903 | SIGN-Metalloprotease-DOC1-Metalloprotease | 5 (5) | 5.36 (5.36)
ORF01388 | SIGN-GH5-CBM?(EndA)-GH5-DOC | 1 (1) | 4.97 (4.97)
ORF00468 | SIGN-GH11-CBM22-GH10-DOC1-GH11 | 7 (4) | 4.74 (6.94)
[NAME] | [NAME] | 1 (1) | 4.49 (4.49)
ORF03897 | SIGN-UNK(pfam08757)-UNK-DOC | 2 (2) | 4.45 (4.45)
ORF01053 | [NAME] | 7 (7) | 4.34 (4.34)
ORF03975 | SIGN-GH5-UNK-DOC1 | 6 (6) | 4.33 (4.33)
ORF03976 | SIGN-GH5-DOC1 | 6 (6) | 4.16 (4.16)
ORF00764 | SIGN-GH43-CBM6-CBM22-DOC1-CE1 | 6 | 4.12
ORF01263 | SIGN-Transglutaminase-DOC | 4 (3) | 4.11 (4.89)
ORF00535 | SIGN-UNK-LamGL(CBM?)-DOC | 3 (3) | 4.10 (4.10)
ORF00769 | [NAME]-GH43 | 2 (2) | 4.09 (4.09)
ORF02983 | SIGN-UNK-CE12-CBM13-DOC1-CBM35-CE12 | 6 (6) | 4.01 (4.01)
ORF01267 | SIGN-LRR-DOC | 4 (4) | 3.87 (3.87)
ORF01264 | SIGN-Transglutaminase-DOC | 10 (10) | 3.86 (3.86)
ORF01266 | SIGN-Transglutaminase-DOC | 8 (7) | 3.52 (3.99)
ORF01321 | SIGN-GH11-CE3-DOC1 | 8 (1) | 3.48 (21.00)
ORF00942 | SIGN-UNK(pfam08757)-UNK-DOC1 | 10 (8) | 3.46 (3.84)
[NAME] | SIGN-GH5-UNK-CBM22-DOC1 | 1 | 3.29
ORF01265 | SIGN-Transglutaminase-DOC | 11 (9) | 2.98 (3.41)
ORF00444 | SIGN-GH97-CBM35-DOC1 | 3 | 2.9
ORF00059 | UNK-DOC1 | 2 (2) | 2.75 (2.75)
ORF01217 | SIGN-LRR-DOC1-UNK | 4 (3) | 2.73 (2.75)
ORF03977 | SIGN-GH5-DOC1 | 7 (6) | 2.71 (3.01)
ORF01045 | [NAME] | 2 (1) | 2.63 (2.69)
ORF00471 | SIGN-SERPIN-CotH-DOC | 5 (2) | 2.52 (4.89)
ORF00463 | SIGN-CBM4-IgX-GH9-DOC1 | 4 (1) | 2.45 (2.54)
ORF00341 | SIGN-GH43-X19-CBM22-DOC1-CE1 | 6 | 2.42
ORF00767 | [NAME] | 5 | 2.36
ORF02868 | SIGN-GH5-UNK(CBM? (EndA)-DOC | 2 (2) | 2.36 (2.36)
ORF00265 | SIGN-DOC1-GH16-GH16-GH16 | 2 | 2.21
ORF03340 | SIGN-DOC-UNK | 1 | 2.14
ORF00227 | SIGN-CBM35-GH5-DOC1 | 2 | 2.11
ORF01964 | SIGN-LRR-DOC | 1 (1) | 2.09 (2.09)
[NAME] | SIGN-CBM22-GH10-DOC1 | 6 (2) | 2.07 (4.73)
ORF02981 | [NAME] | 3 (2) | 2.07 (2.19)
ORF01912 | SIGN-UNK-CBM6-DOC1 | 4 (4) | 2.05 (2.05)
ORF00659 | SIGN-UNK-PL1-DOC1 | 3 (1) | 1.98 (2.55)
ORF01117 | [NAME] | 1 | 1.91
ORF00696 | SIGN-UNK-PL1-UNK-PL9-UNK(CBM?)-DOC | 7 (1) | 1.88 (1.97)
ORF01753 | SIGN-UNK-UNK-DOC | 4 | 1.88
ORF00782 | SIGN-UNK-DOC1 | 7 (3) | 1.86 (2.52)
ORF01965 | SIGN-UNK(LbetaH-LamGL)-DOC | 2 (1) | 1.80 (2.12)
ORF01872 | SIGN-LRR-DOC | 4 (2) | 1.72 (2.77)
ORF04149 | SIGN-GH74-DOC1 | 5 (1) | 1.72 (2.15)
[NAME] | SIGN-UNK-DOC1 | 2 (1) | 1.71 (1.73)
ORF00232-ORF00233 | SIGN-PL1-UNK(CBM?)-DOC | 4 (2) | 1.71 (1.95)
ORF03451 | SIGN-PL11-DOC1-CBM35-CE12 | 9 (2) | 1.66 (3.07)
ORF02975 | SIGN-CBM35-GH26-UNK-DOC1 | 9 (3) | 1.56 (2.37)
ORF01327 | [NAME] | 5 (1) | 1.52 (1.98)
ORF01425 | SIGN-UNK-DOC1 | 12 | 1.52
ORF01541 | SIGN-GH5-CBM32-CBM32-DOC1 | 11 | 1.49
ORF02371 | SIGN-CE8-UNK-PL1-UNK-DOC1 | 10 (1) | 1.44 (1.73)
ORF00886 | SIGN-DOC1-Carboxypeptidase-UNK | 5 | 1.4
ORF01513 | SIGN-UNK-GH43-CBM32-UNK-DOC1 | 3 | 1.4
ORF01568 | SIGN-GH43-UNK-DOC1 | 7 | 1.37
ORF03014 | <-DOC (fragment) | 1 | 1.36
ORF00414 | SIGN-UNK-DOC1 | 5 (1) | 1.35 (1.81)
ORF00464 | SIGN-UNK-DOC1-UNK | 1 | 1.29
ORF01652-ORF01651-ORF01650 | SIGN-PL11-UNK-DOC1 | 7 | 1.28
ORF01475 | SIGN-DOC1-UNK | 2 | 1.26
ORF02878-ORF02877 | SIGN-PL11-CBM13-DOC1 | 8 (2) | 1.26 (2.01)
[NAME] | SIGN-GH43-UNK-CBM13-CBM13-DOC1 | 6 (1) | 1.25 (1.77)
ORF00078 | SIGN-UNK-DOC1-UNK | 4 | 1.24
ORF03228 | SIGN-UNK-DOC1 | 3 | 1.24
ORF03729 | SIGN-CBM22-DOC1-CE1 | 3 | 1.23
ORF03577 | SIGN-CBM4-IgX-GH9-DOC1 | 6 | 1.22
ORF03229 | SIGN-LRR-DOC | 2 | 1.2
ORF01384 | SIGN-PL11-Y72-DOC | 7 (1) | 1.19 (2.89)
ORF03448-ORF03449 | SIGN-GH97-CBM35-DOC1 | 5 | 1.18
ORF00228 | SIGN-UNK-DOC1 | 1 | 1.17
ORF00645 | SIGN-DOC1-UNK | 9 | 1.16
ORF01368 | SIGN-DOC-SERPIN | 1 | 1.16
ORF01654 | SIGN-UNK-PL1-Y72-DOC1 | 10 | 1.16
ORF01571-ORF01570 | SIGN-GH44-CBM(EndB)-DOC | 5 | 1.14
ORF03070 | SIGN-UNK-DOC1-UNK | 3 | 1.14
ORF01869 | SIGN-GH44-UNK(CBM? (EndB)-DOC (celB) | 12 | 1.13
ORF00412 | SIGN-UNK-DOC1 | 4 | 1.09
ORF00700 | SIGN-LRR-UNK-UNK-DOC | 5 | 1.09
ORF03132 | SIGN-DOC1-UNK | 5 | 1.09
ORF01105 | UNK-DOC1 | 2 | 1.08
ORF01739 | SIGN-GH53-CE3-DOC1 | 3 | 1.07
ORF02172 | SIGN-UNK-DOC | 4 (1) | 1.07 (1.95)
ORF02549 | SIGN-DOC-Protease | 6 (1) | 1.07 (2.70)
ORF03749 | SIGN-UNK-DOC | 7 | 1.07
ORF01328 | SIGN-LRR-DOC | 4 | 1.06
ORF03084 | SIGN-UNK-DOC1-UNK | 5 | 1.05
ORF03925 | SIGN-GH48-DOC1 | 4 | 1.04
ORF02518 | SIGN-CBM35-GH26-DOC1 | 10 | 1.04
ORF03305 | SIGN-UNK-DOC1-UNK | 12 | 1.04
ORF03750 | SIGN-UNK-DOC | 6 | 1.03
ORF01478 | SIGN-UNK-DOC1-UNK | 7 | 1.02
ORF00408 | SIGN-Transglutaminase-DOC | 6 | 1
ORF00409 | SIGN-Transglutaminase-DOC | 8 | 0.99
[NAME] | SIGN-UNK-UNK-DOC | 1 | 0.99
ORF04012 | SIGN-CBM22-GH10-CBM22-DOC1 | 3 | 0.99
ORF01191 | UNK-DOC1-UNK | 4 | 0.98
ORF01486 | UNK-DOC1-CE1 | 7 | 0.98
ORF02050 | SIGN-DOC1-UNK | 2 | 0.98
ORF02173 | SIGN-UNK-DOC | 6 (1) | 0.98 (1.95)
ORF00226 | SIGN-GH43-UNK-CBM13-DOC1 | 2 | 0.97
ORF03829 | SIGN-LRR-DOC | 5 | 0.97
ORF00389 | SIGN-GH5-UNK(CBM?)-DOC1 | 1 | 0.96
ORF02556 | SIGN-UNK-UNK-DOC1 | 2 | 0.96
ORF03414 | SIGN-UNK-DOC1-UNK | 6 | 0.96
ORF00728 | SIGN-UNK-DOC1-UNK | 3 | 0.94
ORF01323 | UNK-DOC1-UNK | 8 | 0.94
ORF00810 | SIGN-UNK-DOC | 3 | 0.93
ORF01926 | SIGN-UNK-DOC1 | 5 | 0.93
ORF02519 | SIGN-CE3-DOC | 6 | 0.93
ORF02617 | SIGN-Transglutaminase-DOC | 4 | 0.93
ORF02869 | SIGN-UNK-DOC1 | 1 | 0.93
ORF03471 | SIGN-UNK-DOC1-UNK | 1 | 0.93
ORF02883 | SIGN-LRR-DOC | 3 | 0.91
[NAME] | SIGN-LRR-DOC-UNK | 10 | 0.89
ORF02440 | SIGN-UNK-DOC1 | 7 | 0.89
ORF02890 | SIGN-UNK-DOC1 | 4 | 0.89
ORF04344 | SIGN-GH5-UNK-DOC1 | 8 | 0.89
ORF02444 | SIGN-LRR-DOC1 | 6 | 0.88
ORF01934 | SIGN-UNK-DOC1-UNK | 3 | 0.87
ORF02224 | SIGN-UNK-DOC1-UNK | 7 | 0.87
[NAME] | SIGN-GH11-UNK-DOC1 | 1 | 0.87
ORF02187 | SIGN-UNK-UNK-DOC | 11 | 0.86
ORF00762 | SIGN-UNK-DOC1 | 5 | 0.85
ORF01804 | SIGN-DOC-Peptidase(VanY) | 7 | 0.85
ORF04343 | SIGN-DOC1-UNK | 2 | 0.85
ORF03330 | SIGN-UNK-DOC1-UNK | 1 | 0.83
ORF02267 | SIGN-UNK-DOC1 | 4 | 0.82
[NAME] | SIGN-GH24-UNK-DOC1 | 5 | 0.81
ORF01341 | SIGN-LRR-DOC | 5 | 0.81
ORF03018 | SIGN-LRR-DOC1 | 2 | 0.81
[NAME] | SIGN-LRR-DOC1 | 3 | 0.79
ORF02174 | SIGN-UNK-DOC | 4 | 0.78
ORF03737 | UNK-DOC1 | 5 | 0.77
ORF01857 | SIGN-GH5-DOC1 | 2 | 0.76
ORF03116 | SIGN-CBM?-CBM?-DOC (CttA) | 2 | 0.75
ORF04083 | SIGN-LRR-DOC | 7 | 0.75
ORF01307 | SIGN-UNK-DOC1-UNK | 5 | 0.74
ORF01312 | SIGN-UNK-PL1-DOC1 | 4 | 0.74
ORF03447 | SIGN-CBM35-Esterase/Lipase-DOC-CBM35-GH26 | 8 | 0.74
ORF00658 | SIGN-LRR-UNK-DOC | 8 | 0.72
ORF01442 | SIGN-LRR-DOC-UNK-1/2DOC-UNK | 6 | 0.72
ORF03195 | SIGN-LRR-DOC1 | 1 | 0.72
ORF03218 | [NAME] (CE_NC)-DOC1 | 1 | 0.71
ORF00691 | SIGN-UNK-DOC1 | 1 | 0.7
ORF03307 | SIGN-LRR-UNK-DOC | 7 | 0.69
ORF03670 | [NAME] | 3 | 0.69
[NAME] | SIGN-DOC1-X72-X72-X72-X72-X72-X72-X72-X72-X72-X72-X72-UNK-X72-X72-X72-Peptidase | 4 | 0.66
ORF02171 | SIGN-UNK-DOC1 | 4 | 0.66
ORF03462 | UNK-DOC1 | 5 | 0.65
[NAME] | SIGN-UNK-1/2DOC-UNK | 3 | 0.64
[NAME] | SIGN-DOC-UNK-UNK | 1 | 0.63
[NAME] | SIGN-LRR-DOC1 | 6 | 0.62
ORF02062 | SIGN-LRR-DOC-UNK | 8 | 0.61
ORF02170 | SIGN-UNK-DOC | 3 | 0.6
ORF02202 | UNK-DOC1 | 1 | 0.6
ORF02965 | SIGN-UNK-DOC1 | 2 | 0.59
ORF03573 | SIGN-UNK-DOC1-UNK | 7 | 0.56
ORF00614 | SIGN-Peptidase-UNK-DOC1 | 5 | 0.55
ORF01082 | SIGN-UNK-DOC1 | 4 | 0.54
ORF01674 | SIGN-LRR-DOC | 3 | 0.54
[NAME] | SIGN-Transglutaminase-DOC | 4 | 0.54
ORF02270 | UNK-Conserved Hypothetical-DOC | 2 | 0.54
ORF04062 | SIGN-UNK-DOC1 | 12 | 0.53
ORF02067 | SIGN-UNK-DOC | 1 | 0.52
ORF04060 | SIGN-LRR-DOC | 15 | 0.52
ORF03141 | SIGN-UNK-DOC | 1 | 0.51
ORF03455 | SIGN-Transglutaminase-UNK-DOC | 3 | 0.51
ORF03223 | SIGN-UNK-DOC1 | 5 | 0.5
ORF02978 | SIGN-LRR-DOC | 5 | 0.48
ORF01672 | SIGN-LRR-UNK-DOC-UNK | 6 | 0.47
ORF03067 | SIGN-UNK-DOC1 | 3 | 0.47
ORF02064 | SIGN-LRR-UNK-IgX-DOC | 4 | 0.46
[NAME] | SIGN-LRR-DOC | 3 | 0.46
ORF02065 | SIGN-LRR-UNK-UNK-DOC | 7 | 0.44
ORF04092 | SIGN-DOC-UNK-TM-TM-UNK | 3 | 0.44
ORF01750 | SIGN-UNK-1/2DOC-1/2DOC-UNK | 5 | 0.41
ORF04079 | SIGN-UNK-UNK-DOC | 7 | 0.35
ORF04108 | SIGN-LRR-DOC | 5 | 0.25
ORF04111 | SIGN-LRR-DOC | 5 | 0.17
ORF04112 | SIGN-UNK-DOC | 3 | 0.08
ORF00060 | SIGN-UNK-UNK-DOC | 0
ORF00081 | SIGN-UNK-DOC1 | 0
ORF00082 | SIGN-CBM4-GH9-DOC1 | 0
ORF00270 | SIGN-UNK-DOC1 | 0
ORF00384 | SIGN-UNK-DOC1 | 0
ORF00438 | SIGN-UNK-DOC1 | 0
ORF00690 | SIGN-DOC1-UNK | 0
ORF01050-ORF01051 | SIGN-CBM35-GH26-DOC1 | 0
[NAME] | SIGN-UNK-DOC | 0
ORF01369 | SIGN-DOC-SERPIN | 0
ORF02142 | SIGN-UNK-DOC1 | 0
ORF02449 | SIGN-LRR-DOC1 | 0
ORF02575 | SIGN-UNK-DOC1 | 0
ORF02712 | SIGN-UNK-DOC1 | 0
ORF02889 | SIGN-UNK-DOC1 | 0
ORF03491 | SIGN-UNK-DOC1 | 0
ORF03682 | SIGN-GH18-DOC1 | 0
ORF03970 | SIGN-UNK-UNK-DOC | 0
ORF04065 | UNK-DOC1 | 0
ORF04066 | UNK-DOC | 0
The numbers in parentheses indicate the number of significant clones ([NAME] adjusted p-value<0.05) and their corresponding average fold change.