Spreadsheet: 36052958-bb74-4f2d-a9b8-3a1e614c30d5
Sheet: NCTC11168

Table S11. sRNA candidates in the chromosomes of four C. jejuni strains - NCTC11168.
This table lists sRNA candidates in strain NCTC11168.
sRNA | Strand | Start | End | Length | Orientation | LFG | RFG | LFG Description | RFG Description | Comments
SRP RNA | + | 66641 | 66748 | 108 | <>> | [NAME] | Cj0046 | putative iron-binding protein | transport protein pseudogene | Detected on Northern blot
CJnc10 | + | 94344 | 94249 | 96 | >>< | Cj0082 | Cj0085c | cydB | aspartate racemase | Detected on Northern blot
CJnc11 | - | 237792 | 237728 | 65 | ><< | Cj0259 | Cj0261c | dihydroorotase (pyrC) | putative SAM-dependent methyltransferase | Detected in dRNA-seq data. Not probed on Northern blot. Derived from 3’ end of Cj0260c.
CJnc20 | - | 245380 | 245225 | 156 | <<< | Cj0265c | [NAME] | putative cytochrome C-type haem-binding periplasmic protein | putative integral membrane protein | Detected on Northern blot
TPP | + | 418415 | 418550 | 136 | >>> | Cj0452 | Cj0453 | DNA polymerase III subunit epsilon | thiamine biosynthesis protein (thiC) | Detected in dRNA-seq data. Not probed on Northern blot.
[NAME] | + | 430270 | 430366 | 97 | >>< | Cj0463 | Cj0465c | zinc protease-like protein | group III truncated haemoglobin | Detected in dRNA-seq data. Not detected on Northern blot
RnpB | - | 513453 | 513137 | 317 | ><> | Cj0550 | Cj0551 | hypothetical protein | elongation factor P | Detected on Northern blot
CJnc21 | + | 543101 | 543269 | 169 | >>> | Cj0582 | Cj0584 | aspartate kinase (lysC) | DNA polymerase III subunit delta | Detected on Northern blot
CJnc30 | + | 591313 | 591426 | 99 | >>< | Cj0628 | Cj0630c | putative lipoprotein | DNA polymerase III subunit delta | Detected on Northern blot
CJnc40 | - | 591456 | 591356 | 101 | ><< | Cj0628 | Cj0630c | putative lipoprotein | DNA polymerase III subunit delta | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJnc60 | - | 671798 | 671518 | 281 | ><> | Cj0717 | Cj0718 | putative [NAME] family protein | DNA polymerase III subunit alpha | Detected on Northern blot. Note: Probably corresponds to a small mRNA. Contains non-annotated selW ORF [1].
CJnc110 | + | 1127994 | 1128130 | 137 | >>> | Cj1198 | Cj1199 | S-ribosylhomocysteinase | putative iron/ascorbate-dependent oxidoreductase | Detected on Northern blot
CJnc120 | + | 1151053 | 1151149 | 97 | >>< | Cj1220 | Cj1222c | groES | sensor histidine kinase (dccS) | Detected on Northern blot (processed from 3’ end of [NAME])
6S RNA (CJnc130) | + | 1179587 | 1179772 | 186 | >>> | Cj1249 | Cj1250 | hypothetical protein | phosphoribosylamine--glycine ligase | Detected on Northern blot.
pRNA | - | 1179623 | 1179610 | 14 | ><> | Cj1249 | Cj1250 | hypothetical protein | phosphoribosylamine-glycine ligase | Detected in dRNA-seq data. Not probed on Northern blot.
[NAME] | + | 1188925 | 1188997 | 73 | >>> | Cj1258 | Cj1259 | putative phosphotyrosine protein phosphatase | major outer membrane protein (porA) | Detected on Northern blot
tmRNA | - | 1293658 | 1293300 | 359 | ><< | Cj1359 | [NAME] | polyphosphate kinase (ppk) | hypothetical protein | Detected on Northern blot
crRNA1 | + | 1455167 | 1455204 | 38 | >>> | Cj1519 | crRNA2 | putative molybdopterin biosynthesis protein ([NAME]) | crRNA2 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA2 | + | 1455232 | 1455269 | 38 | >>> | crRNA1 | crRNA3 | crRNA1 | crRNA3 | Detected on Northern blot
crRNA3 | + | 1455299 | 1455336 | 38 | >>> | crRNA2 | crRNA4 | crRNA2 | crRNA4 | Detected in dRNA-seq data. Not probed on Northern blot.
crRNA4 | + | 1455363 | 1455400 | 38 | >>> | crRNA3 | crRNA5 | crRNA3 | TracrRNA | Detected on Northern blot
TracrRNA | + | 1455497 | 1455570 | 74 | >>< | crRNA4 | Cj1521c | crRNA4 | CRISPR-associated protein 2 (cas2) | Detected on Northern blot
CJnc150 | - | 1393825 | 1393745 | 81 | ><< | Cj1455 | Cj1456c | peptide chain release factor 2 | putative periplasmic protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJnc160 | + | 1554542 | 1554568 | 27 | <>< | Cj1625c | Cj1626c | amino acid transporter | putative periplasmic protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJnc170 | + | 1559676 | 1559722 | 47 | >>< | Cj1633 | Cj1634c | putative ATP-binding protein | chorismate synthase (aroC) | Detected on Northern blot
CJnc180 | + | 1575014 | 1575112 | 99 | >>< | Cj1650 | Cj1651c | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc190
CJnc190 | - | 1575257 | 1575042 | 216 | ><< | Cj1650 | Cj1651c | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc180
CJnc210 | + | 1600382 | 1600468 | 87 | >>> | Cj1677 | Cj1679 | putative lipoprotein | hypothetical protein | Detected in dRNA-seq data
CJnc230 | - | 1638039 | 1637942 | 98 | <<< | Cj1727c | Cj1729c | putative O-acetylhomoserine (thiol)-lyase | flagellar hook protein (flgE) | Detected on Northern blot (processed)
IGR_906748_ 907066 | - | 907066 | 906748 | 319 | ><> | Cj0967 | Cj0969 | putative periplasmic protein | probable periplasmic protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJas_Cj0168c | + | 165893 | - | >100 | >>> | Cjp03 | Cj0169 | tRNA-Glu | superoxide dismutase | Detected in dRNA-seq data. Antisense to Cj0168c (putative periplasmic protein). Not detected on Northern blot.
CJas_Cj0363c | + | 329341 | 329423 | 83 | >>> | Cj0361 | Cj0364 | [NAME] peptidase | hypothetical protein | Detected in dRNA-seq data. Transcribed from the 3’ end of Cj0362. Antisense to Cj0363c (coproporphyrinogen III oxidase). Not detected on Northern blot.
CJas_Cj0566 | - | 528700 | - | >100 | ><> | Cj0565 | [NAME] | probable pseudogene | hypothetical protein | Detected in dRNA-seq data. Antisense to Cj0566 (hypothetical protein). Not detected on Northern blot.
CJas_Cj0704 | - | 661794 | - | >100 | ><> | Cj0703 | Cj0705 | hypothetical protein | hypothetical protein | Detected on Northern blot. Antisense to Cj0704 (glycyl-tRNA synthetase subunit alpha)
CJas_Cj1667c | + | 1589598 | 1589666 | 69 | <>< | Cj1666c | Cj1668c | putative periplasmic protein | putative periplasmic protein | Detected on Northern blot. Antisense to Cj1667c (repA).
[1] Gursinsky, [NAME]. Factors and selenocysteine insertion sequence requirements for the synthesis of selenoproteins from a gram-positive anaerobe in Escherichia coli. Appl Environ Microbiol 74, 1385-1393 (2008).