Spreadsheet: 026c77c4-5c03-4bdf-aa7c-2d5673cde4f1
Sheet: Sheet1

Supplementary Table 4A. Enrichment of GO:Biological Process terms The total number of genes in P. pacificus genome with a given GO term are in the "Annotated" column, the number of genes observed to be siginificantly differentially expressed are in the cloumn "Significant" and the number of genes expected by random chance are given in the column "Expected". The p-value for enrichment was calculated using the method "elimFisher" in the "topGO" tool in Bioconductor. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5
GO.ID | Term | Annotated | Significant | Expected | elimFisher
GO:0002119 | nematode larval development | 1279 | 488 | 347.07 | 4.4e-21
GO:0000003 | reproduction | 1448 | 562 | 392.93 | 1.6e-16
GO:0006898 | receptor-mediated endocytosis | 497 | 214 | 134.87 | 3.9e-16
GO:0040035 | hermaphrodite genitalia development | 496 | 210 | 134.6 | 7.2e-15
GO:0040010 | positive regulation of growth rate | 1195 | 415 | 324.28 | 1.2e-11
GO:0006412 | translation | 185 | 100 | 50.2 | 8.8e-11
[NAME] | RNA interference | 77 | 44 | 20.89 | 2.2e-08
GO:0040007 | growth | 1707 | 590 | 463.22 | 7.5e-08
GO:0040020 | regulation of meiosis | 49 | 31 | 13.3 | 1.1e-07
GO:0042127 | regulation of cell proliferation | 49 | 31 | 13.3 | 1.1e-07
GO:0000910 | cytokinesis | 84 | 45 | 22.79 | 2.1e-07
GO:0007281 | germ cell development | 67 | 37 | 18.18 | 9.6e-07
GO:0008406 | [NAME] | 50 | 29 | 13.57 | 3.9e-06
GO:0040027 | negative regulation of vulval development | 111 | 51 | 30.12 | 1.3e-05
GO:0001703 | gastrulation with mouth forming first | 45 | 26 | 12.21 | 1.4e-05
GO:0015684 | ferrous iron transport | 9 | 8 | 2.44 | 0.0002
GO:0042026 | protein refolding | 9 | 8 | 2.44 | 0.0002
GO:0006457 | protein folding | 53 | 31 | 14.38 | 0.00031
GO:0006997 | nucleus organization | 22 | 14 | 5.97 | 0.00036
GO:0008340 | determination of adult lifespan | 402 | 139 | 109.09 | 0.00036
GO:0006396 | RNA processing | 87 | 44 | 23.61 | 0.00047
GO:0006281 | DNA repair | 53 | 28 | 14.38 | 0.00057
GO:0040019 | positive regulation of embryonic development | 16 | 11 | 4.34 | 0.00061
GO:0016477 | cell migration | 111 | 46 | 30.12 | 0.00092
GO:0051603 | proteolysis involved in cellular protein catabolism | 42 | 22 | 11.4 | 0.00207
GO:0007052 | mitotic spindle organization | 36 | 18 | 9.77 | 0.00282
[NAME] | meiotic chromosome segregation | 61 | 27 | 16.55 | 0.00282
GO:0006413 | translational initiation | 16 | 10 | 4.34 | 0.00316
GO:0006310 | DNA recombination | 19 | 11 | 5.16 | 0.00453
GO:0006260 | DNA replication | 45 | 23 | 12.21 | 0.00571
GO:0040022 | feminization of hermaphroditic germ-line | 17 | 10 | 4.61 | 0.00583
GO:0006364 | rRNA processing | 17 | 10 | 4.61 | 0.00583
GO:0006418 | tRNA aminoacylation for protein translation | 38 | 18 | 10.31 | 0.00587
GO:0002009 | morphogenesis of an epithelium | 229 | 79 | 62.14 | 0.00724
GO:0022613 | ribonucleoprotein complex biogenesis | 28 | 17 | 7.6 | 0.01182
GO:0006511 | ubiquitin-dependent protein catabolism | 35 | 16 | 9.5 | 0.01378
GO:0006605 | protein targeting | 17 | 11 | 4.61 | 0.01499
GO:0006414 | translational elongation | 14 | 8 | 3.8 | 0.01705
GO:0006270 | DNA-dependent DNA replication initiation | 7 | 5 | 1.9 | 0.01847
GO:0006298 | mismatch repair | 5 | 4 | 1.36 | 0.02117
GO:0072594 | establishment of protein localization to organelle | 12 | 7 | 3.26 | 0.02234
GO:0006915 | apoptosis | 26 | 12 | 7.06 | 0.02883
GO:0009566 | fertilization | 32 | 14 | 8.68 | 0.03129
GO:0033554 | cellular response to stress | 104 | 48 | 28.22 | 0.0359
GO:0006613 | cotranslational protein targeting to membrane | 8 | 5 | 2.17 | 0.03834
GO:0017038 | protein import | 8 | 5 | 2.17 | 0.03834
GO:0006479 | protein methylation | 8 | 5 | 2.17 | 0.03834
GO:0007067 | mitosis | 39 | 16 | 10.58 | 0.04152
GO:0040039 | inductive cell migration | 80 | 29 | 21.71 | 0.04535
GO:0000398 | nuclear mRNA splicing, via spliceosome | 6 | 4 | 1.63 | 0.0499