Spreadsheet: 02d28f96-f10d-4d95-84b3-af2fc7ee4488
Sheet: Sheet1

Table S2. Protein-DNA Interactions | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7
Bait | Prey    (Sequence name) | [NAME]Public name) | DNA-binding domain | Times found | Digestive tract annotation? | Expression pattern or mutation | Reference
PB0507.1 | F43G9.11 | CES-1 | ZF - C2H2 | 4xT | yes | pharyngeal primordium | Ellis and Horvitz, 1991
PB0507.1 | C42D8.4 | ETS-5 | WH - ETS | 1xC | no | head neurons | Hart et al., 2000
PB0507.1 | F34D10.5 | LIN-48 | ZF - C2H2 | 1xC | yes | hindgut | [NAME] et al., 2001
PB0507.1 | F13G3.1 | ZTF-2 | ZF - C2H2 | Directed (weak) | yes** | pharynx and hindgut | This study
Pbar-1 | [NAME] | [NAME] | ZF - C2H2 | Directed | yes | pharynx and intestine | [NAME]. 2001
Pbar-1 | C42D8.4 | ETS-5 | WH - ETS | Directed | no | head neurons | Hart et al., 2000
Pbar-1 | F44G3.9 | NHR-111 | ZF - NHR | Directed | no | head neurons | www.wormbase.org
Pbar-1 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
PC04F12.9 | [NAME] | [NAME] | ZF - C2H2 | 3xC; 3xT | yes | pharynx and intestine | [NAME]. 2001
PC04F12.9 | [NAME] | ECH-6 | NOVEL | 2xC
PC04F12.9 | F28B12.2 | EGL-44 | TEA/ATTS | 1xC | yes | pharyngeal muscle and intestine | [NAME] et al., 2001
PC04F12.9 | T12C9.5 | [NAME] | ZF - NHR | 1xC
PC04F12.9 | F54F2.5 | ZTF-1 | ZF - C2H2 | 1xC; 2xT | yes** | intestine | This study
PC18A11.1 | [NAME] | [NAME] | ZF - C2H2 | Directed | yes | pharynx and intestine | [NAME]. 2001
PC18A11.1 | F40H3.4 | FKH-8 | WH - Fork Head | Directed | yes** | Neuronal, but expression enriched in developing pharynx | Hope et al., 2003; [NAME] et al., 2004
PC18A11.1 | T09A12.4 | NHR-66 | ZF - NHR | 1xC | yes | pharynx and intestine | www.wormbase.org
PC18A11.1 | Y44E3B.1 | ZIP-4 | bZIP | 3xC
PC18A11.1 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
PC18A11.1 | ZC204.12 |  | NOVEL | 17XC | yes** | intestine | This study
PC30G12.1 | H02I12.5 |  | NOVEL | 2xC
PC49C3.5 | F47G4.6 |  | HMG | 3xT | no | amphids and phasmids | This study
Pcdr-4 | T18D3.2 | ODR-7 | ZF - NHR | 16XT | no | neuronal | [NAME], 1994
[NAME] | [NAME] | [NAME] | ZF - C2H2 | 2XT; 3XC | yes | pharynx and intestine | [NAME]. 2001
[NAME] | [NAME] | ELT-1 | ZF - GATA | Directed | yes | Embryonal expression and possibly posterior intestinal cells in adults | [NAME], 1992; Gilleard and McGhee, 2001
[NAME] | C33D3.1 | ELT-2 | ZF - GATA | Directed | yes | intestine specific | [NAME], 1998
[NAME] | K02B9.4 | ELT-3 | ZF - GATA | 1xT | yes | pharyngo-intestino valve; intestino-rectal valve | [NAME], 1999
[NAME] | F58E10.5 | END-3 | ZF - GATA | 3xC | yes | E lineage | [NAME] et al., 2003
[NAME] | F44E7.8 | NHR-142 | ZF - NHR | 1xC
[NAME] | F54F2.5 | ZTF-1 | ZF - C2H2 | 3xT | yes** | intestine | This study
[NAME] | H02I12.5 |  | NOVEL | 5XC
[NAME] | Y62E10A.14 |  | NOVEL | 2xC
Pceh-2 | C05D2.5 | GAK-1 | AT HOOK | 8xC
Pceh-2 | JC8.6 |  | NOVEL | Directed | yes** | pharynx and intestine | This study
Pceh-24 | Y38E10A.18 | NHR-234 | ZF - NHR | 22XT
Pceh-24 | T18D3.2 | ODR-7 | ZF - NHR | Directed | no | neuronal | [NAME], 1994
Pceh-24 | T07C4.2 | TBX-8 | T-BOX | 1xC | yes | E and intestine; mutant intestine defect | Pocock et al., 2004
Pceh-24 | Y59A8B.13 |  | ZF - C2H2 | 1xC
Pceh-5 | Y75B8A.1 | PHP-3 | HD - HOX | Directed
Pceh-5 | ZC204.12 |  | NOVEL | 1xC | yes** | intestine | This study
Pcyp-33C8 | F31E8.3 | TAB-1 | HD - NK | [NAME] | no | touch neurons | www.wormbase.org
Pdaf-16 | T18D3.2 | ODR-7 | ZF - NHR | Directed | no | neuronal | [NAME], 1994
Pdaf-19 | F33H1.1 | DAF-19 | RFX | 2xC | yes | intestine | [NAME], 2000
Pdaf-19 | C53D5.4 | ZTF-3 | ZF - C2H2 | 3xC | yes** | ubiquitous, strongest in pharynx and rectum | This study
Pdaf-3 | C44B9.4 | ATHP-1 | AT HOOK, PHD finger | 2xC
Pdaf-3 | D1007.1 | CEH-17 | HD - PRD | 77xT | no | ring neurons tail | [NAME] et al., 2000
Pdaf-3 | [NAME] | [NAME] | ZF - C2H2 | 12xC | yes | pharynx and intestine | [NAME]. 2001
Pdaf-3 | C05D2.5 | GAK-1 | AT HOOK | 1xC
Pdaf-3 | T05C12.6 | MIG-5 | UNKNOWN* | 1xC | yes** | endoderm formation; EMS and E expression | Bei et al., 2002
Pdaf-3 | F16H11.5 | NHR-45 | ZF - NHR | 1xC
Pdaf-3 | T18D3.2 | ODR-7 | ZF - NHR | 6xT | no | neuronal | [NAME], 1994
Pdaf-3 | C38D4.6 | [NAME] | HD - HOX | 14xC | yes | EMS | [NAME] and Kenyon, 1996
Pdaf-3 | [NAME] | SOX-2 | HMG | [NAME] | no | hypodermis, nervous system | www.wormbase.org
Pdaf-3 | T23G4.1 | TLP-1 | UNKNOWN* | Directed | yes | intestine | Zhao et al., 2002
Pdaf-3 | F54F2.5 | ZTF-1 | ZF - C2H2 | 4xC | yes** | intestine | This study
Pdaf-3 | F46B6.7 | ZTF-7 | ZF - C2H2 | 1xC | yes | pharynx and intestine | www.wormbase.org
Pdaf-3 | R06C1.6 |  | NOVEL | 2xC
Pdaf-3 | ZC204.12 |  | NOVEL | 7xC | yes** | intestine | This study
Pdie-1 | F46F11.2 | CEY-2 | COLD BOX | 1xC | yes | posterior intestine and rectum; embryo | This study; Seydoux and Fire, 1994
Pdie-1 | T19E7.2 | SKN-1 | bZIP | 2xC | yes | E lineage | [NAME] et al., 2001
Pdie-1 | ZC204.12 |  | NOVEL | 1xC | yes** | intestine | This study
Pdpr-1 | T07C4.2 | TBX-8 | T-BOX | 3xC | yes | E and intestine; mutant intestine defect | Pocock et al., 2004
Pdpr-1 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
Pdpr-1 | H02I12.5 |  | NOVEL | Directed
Pdpr-1 | JC8.6 |  | NOVEL | Directed | yes** | pharynx and intestine | This study
Pegl-46 | C01H6.5 | NHR-23 | ZF - NHR | 2xC; 15xT | no | epidermis, [NAME], germline | [NAME] et al., 1998
Pegl-46 | Y38C9A.1 |  | NOVEL | 2xC
Pelo-6 | F44G3.9 | NHR-111 | ZF - NHR | 12xT | no | head neurons | www.wormbase.org
Pelt-1 | ZC204.12 |  | NOVEL | 7xC | yes** | intestine | This study
Pelt-4 | F22D3.1 | CEH-38 | HD - CUT | 2xC | yes | pharynx and intestine | [NAME], 1998
Pelt-4 | C28A5.4 | CEH-43 | HD - NK | 1xT | yes | pharynx procorpus | Aspock and Burglin, 2001
Pelt-4 | C27C12.6 | DMD-4 | DM | Directed | yes | pharynx and pharyngo-intestinal valve | [NAME] and Mango, 2002
Pelt-4 | F10C1.5 | DMD-5 | DM | 3xC, 6XT
Pelt-4 | F55A8.1 | EGL-18 | ZF - GATA | 5xC | no | nervous cells, head, seam cells | Koh and Rothman, 2001
Pelt-4 | C33D3.1 | ELT-2 | ZF - GATA | Directed | yes | intestine specific | [NAME], 1998
Pelt-4 | K02B9.4 | ELT-3 | ZF - GATA | Directed | yes | pharyngo-intestino valve; intestino-rectal valve | [NAME], 1999
Pelt-4 | F52C12.5 | ELT-6 | ZF - GATA | 4xC | no | seam cells head | Koh and Rothman, 2001
Pelt-4 | C08C3.3 | MAB-5 | HD - HOX | 17XC, 1XT | yes | intestine | Cowing and Kenyon, 1992
Pelt-4 | C39E6.4 | [NAME] | HD - NK | 2xC | no | M lineage cells and head neurons | [NAME] and [NAME], 2004
Pelt-4 | C38D4.6 | [NAME] | HD - HOX | Directed | yes | EMS | [NAME] and Kenyon, 1996
Pelt-4 | F31E8.3 | TAB-1 | HD - NK | 3xT | no | touch neurons | www.wormbase.org
Pemb-5 | [NAME] | [NAME] | ZF - C2H2 | 2xC; 2xT | yes | pharynx and intestine | [NAME]. 2001
Pemb-5 | T18D3.2 | ODR-7 | ZF - NHR | Directed | no | neuronal | [NAME], 1994
Pemb-5 | F54F2.5 | ZTF-1 | ZF - C2H2 | 3xT | yes** | intestine | This study
Pend-3 | F54F2.5 | ZTF-1 | ZF - C2H2 | 1xT | yes** | intestine | This study
Pets-4 | F44G3.9 | NHR-111 | ZF - NHR | 5xT | no | head neurons | www.wormbase.org
Pets-4 | T07C4.2 | TBX-8 | T-BOX | 1xC | yes | E and intestine; mutant intestine defect | Pocock et al., 2004
Pets-4 | JC8.6 |  | NOVEL | Directed | yes** | pharynx and intestine | This study
Pexp-2 | F58E10.2 | END-1 | ZF - GATA | Directed | yes | E lineage | [NAME], 1997
Pexp-2 | F44G3.9 | NHR-111 | ZF - NHR | [NAME] | no | head neurons | www.wormbase.org
Pexp-2 | F58G6.5 | NHR-34 | ZF - NHR | 6xT, 3xC
Pexp-2 | C07A12.3 | NHR-35 | ZF - NHR | 1xC | yes** | intestine | This study
Pexp-2 | F32B6.1 | NHR-4 | ZF - NHR | 1xC | no | head and tail neurons | www.wormbase.org
Pexp-2 | C45E5.6 | NHR-46 | ZF - NHR | 1xT, 7xC
Pexp-2 | T23H4.2 | NHR-69 | ZF - NHR | 1xC | yes | pharynx and intestine | Gissendanner et al., 2004
Pexp-2 | T07C4.2 | TBX-8 | T-BOX | 8xC | yes | E and intestine; mutant intestine defect | Pocock et al., 2004
Pexp-2 | Y65B4BR.5 |  | UNKNOWN* | 1xC
PF09F3.6 | F46F11.2 | CEY-2 | COLD BOX | 1xC | yes | posterior intestine and rectum; embryo | This study; Seydoux and Fire, 1994
PF13H10.1 | ZC204.12 |  | NOVEL | 4xC | yes** | intestine | This study
PF25E5.2 | [NAME] | [NAME] | ZF - C2H2 | 3xC | yes | pharynx and intestine | [NAME]. 2001
PF25E5.2 | F40G9.11 | MXL-2 | bHLH | 1xC | yes** | broad expression, intestine | This study
PF26A10.2 | T18D3.2 | ODR-7 | ZF - NHR | 1xT | no | neuronal | [NAME], 1994
PF28B12.1 | C26D10.2 | HEL-1 | NOVEL*** | 2xC | yes** | pharyx and hindgut | www.wormbase.org
PF38B6.1 | F17A9.6 | CEH-49 | HD - CUT | 1xT
PF38B6.1 | [NAME] | PIE-1 | ZF - CCCH, 2 domains | 1xT | yes | pharynx and intestine in excess | Mello et al., 1992
PF38B6.1 | F31E8.3 | TAB-1 | HD - NK | 1xT; 1xC | no | touch neurons | www.wormbase.org
PF52B11.5 | Y48B6A.14 | HMG-1.1 | HMG | Directed | yes** | ubiquitous, strongest in pharynx | This study
PF53B3.3 | C01H6.5 | NHR-23 | ZF - NHR | 16XT | no | epidermis, [NAME], germline | [NAME] et al., 1998
PF53B3.3 | Y40B1A.4 |  | ZF - C2H2 | [NAME] | yes** | intestine | This study
PF53B3.3 | Y55F3AM.6 |  | ZF - CCCH, 3 domains | 1xT
PF53B3.3 | ZK1128.6 |  | NOVEL | 4xC
Pfat-5 | [NAME] | [NAME] | ZF - C2H2 | 1xC, 5xT | yes | pharynx and intestine | [NAME]. 2001
Pfat-5 | F28B12.2 | EGL-44 | TEA/ATTS | 2xC | yes | pharyngeal muscle and intestine | [NAME] et al., 2001
Pfat-5 | C07A12.3 | NHR-35 | ZF - NHR | 1xC | yes** | intestine | This study
Pfat-5 | T07C4.2 | TBX-8 | T-BOX | 1xC | yes | E and intestine; mutant intestine defect | Pocock et al., 2004
Pfat-5 | F13G3.1 | ZTF-2 | ZF - C2H2 | 1xC; 22xT | yes** | pharynx and hindgut | This study
Pges-1 | [NAME] | [NAME] | ZF - C2H2 | 4xT | yes | pharynx and intestine | [NAME]. 2001
Pges-1 | C33D3.1 | ELT-2 | ZF - GATA | Directed | yes | intestine specific | [NAME], 1998
Pges-1 | K02B9.4 | ELT-3 | ZF - GATA | Directed | yes | pharyngo-intestino valve; intestino-rectal valve | [NAME], 1999
Pges-1 | F58E10.5 | END-3 | ZF - GATA | [NAME] | yes | E lineage | [NAME] et al., 2003
Pges-1 | T01B10.4 | NHR-14 | ZF - NHR | 1xC
Pges-1 | T18D3.2 | ODR-7 | ZF - NHR | 1xT | no | neuronal | [NAME], 1994
Pges-1 | F54F2.5 | ZTF-1 | ZF - C2H2 | 1xC | yes** | intestine | This study
Pges-1 | JC8.6 |  | NOVEL | 13XC | yes** | pharynx and intestine | This study
Phlh-6 | R13H8.1 | [NAME] | WH - Fork Head, AT Hook | Directed | yes | pharynx and intestine | Ogg et al., 1997; [NAME], 2001
Phlh-6 | F18A1.2 | LIN-26 | ZF - C2H2 | 16xC; 13xT | yes | hindgut | Chanal and Labouesse , 1997
Phlh-6 | C29E6.5 | NHR-43 | ZF - NHR | 1xC | no | neuronal | This study
Phlh-6 | T18D3.2 | ODR-7 | ZF - NHR | 1xC; 2xT | no | neuronal | [NAME], 1994
Pinx-6 | [NAME] | [NAME] | ZF - C2H2 | 4XC; 1XT | yes | pharynx and intestine | [NAME]. 2001
Pinx-6 | C42D8.4 | ETS-5 | WH - ETS | 1xC | no | head neurons | Hart et al., 2000
Pinx-6 | C36F7.1 | IRX-1 | HD - TALE | [NAME]
Pinx-6 | F18A1.2 | LIN-26 | ZF - C2H2 | 1xC; 2xT | yes | hindgut | Chanal and Labouesse , 1997
Pinx-6 | F44G3.9 | NHR-111 | ZF - NHR | 10XT | no | head neurons | www.wormbase.org
Pinx-6 | C01H6.5 | NHR-23 | ZF - NHR | 23xT | no | epidermis, [NAME], germline | [NAME] et al., 1998
Pinx-6 | C38D4.6 | [NAME] | HD - HOX | 1xT | yes | EMS | [NAME] and Kenyon, 1996
Pinx-6 | F54F2.5 | ZTF-1 | ZF - C2H2 | 1XC; 4XT | yes** | intestine | This study
Pinx-6 | F13G3.1 | ZTF-2 | ZF - C2H2 | 6XT | yes** | pharynx and hindgut | This study
Pinx-6 | JC8.6 |  | NOVEL | Directed | yes** | pharynx and intestine | This study
Pinx-6 | Y38C9A.1 |  | NOVEL | 5XC
PK07D4.6 | F46C8.5 | CEH-14 | HD - LIM | 23XT | no | neurons, spermathecae, hypodermis | [NAME] et al., 1997
PK07D4.6 | T23D8.8 | CFI-1 | ARID/BRIGHT | 2xC | yes | pharyngeal muscle cells | Shaham and Bargmann, 2002
PK07D4.6 | [NAME] | [NAME] | ZF - C2H2 | 2xC; 7xT | yes | pharynx and intestine | [NAME]. 2001
PK07D4.6 | C05D2.5 | GAK-1 | AT HOOK | 1xC
PK07D4.6 | C32C4.5 | MAB-23 | DM | [NAME] | yes | hindgut | Lints and Emmons, 2002
PK07D4.6 | C39E6.4 | [NAME] | HD - NK | 3xT | no | M lineage cells and head neurons | [NAME] and [NAME], 2004
PK07D4.6 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
PK07D4.6 | JC8.6 |  | NOVEL | 3xC | yes** | pharynx and intestine | This study
PK07D4.6 | ZC204.12 |  | NOVEL | 8xC | yes** | intestine | This study
Plin-29 | C38D4.6 | [NAME] | HD - HOX | 6XC | yes | EMS | [NAME] and Kenyon, 1996
Plin-48 | [NAME] | [NAME] | ZF - C2H2 | 1xC | yes | pharynx and intestine | [NAME]. 2001
Plin-48 | F28B12.2 | EGL-44 | TEA/ATTS | 1xC | yes | pharyngeal muscle and intestine | [NAME] et al., 2001
Plin-48 | C05D2.5 | GAK-1 | AT HOOK | 1xC
Plin-48 | F18A1.2 | LIN-26 | ZF - C2H2 | 3xT | yes | hindgut | Chanal and Labouesse , 1997
Plin-48 | F44E7.8 | NHR-142 | ZF - NHR | [NAME]
Plin-48 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
Plin-48 | W06H12.1 | ZTF-6 | ZF - C2H2 | 1xT | yes** | rectum | This study
Plin-48 | ZC204.12 |  | NOVEL | 4xC | yes** | intestine | This study
Plit-1 | C38D4.6 | [NAME] | HD - HOX | 6XC; 3XT | yes | EMS | [NAME] and Kenyon, 1996
Plit-1 | K07C11.1 | PAX-1 | PD | Directed
PM01D1.2 | T08H4.3 | AST-1 | WH - ETS | Directed
PM01D1.2 | ZK265.4 | CEH-8 | HD - PRD, 2 domains | Directed
PM01D1.2 | F28B12.2 | EGL-44 | TEA/ATTS | 3xC | yes | pharyngeal muscle and intestine | [NAME] et al., 2001
PM01D1.2 | F52F12.6 | EKL-2 | ZF C2HC | 1xC | yes | pharyngeal gland | www.wormbase.org
PM01D1.2 | F18A1.2 | LIN-26 | ZF - C2H2 | 4xT | yes | hindgut | Chanal and Labouesse , 1997
PM01D1.2 | T23H4.2 | NHR-69 | ZF - NHR | Directed | yes | pharynx and intestine | Gissendanner et al., 2004
PM01D1.2 | [NAME] | PIE-1 | ZF - CCCH, 2 domains | 3xT | yes | pharynx and intestine in excess | Mello et al., 1992
PM01D1.2 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
PM01D1.2 | F13G3.1 | ZTF-2 | ZF - C2H2 | Directed | yes** | pharynx and hindgut | This study
Pmab-23 | [NAME] | [NAME] | ZF - C2H2 | Directed | yes | pharynx and intestine | [NAME]. 2001
Pmab-23 | F22A3.1 | ETS-4 | WH - ETS | 1xC | yes | pharynx and intestine | www.wormbase.org
Pmab-23 | C49A1.4 | EYA-1 | NOVEL*** | 3xC | yes** | mutant has abnormal pharynx and pumping | Furuya and Sugimoto, 2004
Pmab-23 | F44G3.9 | NHR-111 | ZF - NHR | 1xC ; 11xT | no | head neurons | www.wormbase.org
Pmab-23 | C38D4.6 | [NAME] | HD - HOX | 1xT; 2xC | yes | EMS | [NAME] and Kenyon, 1996
Pmab-23 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
Pmdl-1 | F25E2.5 | DAF-3 | MH1 | Directed | yes | intestine | [NAME] et al., 1997
Pmdl-1 | W02A2.7 | [NAME] | ZF - CCCH, 2 domains | 3xC | yes** | mutant excess intestine | [NAME] et al., 2000
Pmed-2 | F28B12.2 | EGL-44 | TEA/ATTS | 1xC | yes | pharyngeal muscle and intestine | [NAME] et al., 2001
Pnhr-22 | F31E8.3 | TAB-1 | HD - NK | [NAME] | no | touch neurons | www.wormbase.org
Pnhr-28 | [NAME] | [NAME] | ZF - C2H2 | 3xC; 9xT | yes | pharynx and intestine | [NAME]. 2001
Pnhr-28 | F28B12.2 | EGL-44 | TEA/ATTS | 3xC | yes | pharyngeal muscle and intestine | [NAME] et al., 2001
Pnhr-28 | F54F2.5 | ZTF-1 | ZF - C2H2 | [NAME] | yes** | intestine | This study
Pnhr-28 | H02I12.5 |  | NOVEL | Directed
Pnhr-28 | Y47D3B.9 |  | ZF BED | 1xC
Pnhr-28 | ZC204.12 |  | NOVEL | 10xC | yes** | intestine | This study
Pnhr-68 | R05D11.1 | DAF-8 | MH1 | 1xT
Pnhr-68 | [NAME] | [NAME] | ZF - C2H2 | 3xC; 8xT | yes | pharynx and intestine | [NAME]. 2001
Pnhr-68 | T18D3.2 | ODR-7 | ZF - NHR | 5XT | no | neuronal | [NAME], 1994
Pnhr-68 | K02F3.4 | ZIP-2 | bZIP | 1xT
Pnhr-68 | JC8.6 |  | NOVEL | 5XC | yes** | pharynx and intestine | This study
Ppeb-1 | [NAME] | ELT-1 | ZF - GATA | Directed | yes | Embryonal expression and possibly posterior intestinal cells in adults | [NAME], 1992; Gilleard and McGhee, 2002
Ppeb-1 | C33D3.1 | ELT-2 | ZF - GATA | Directed | yes | intestine specific | [NAME], 1998
Ppeb-1 | K02B9.4 | ELT-3 | ZF - GATA | Directed | yes | pharyngo-intestino valve; intestino-rectal valve | [NAME], 1999
Ppeb-1 | C32F10.6 | NHR-2 | ZF - NHR | Directed | yes | EMS and MS (weaker in E) | [NAME], 1997
Ppop-1 | C44B9.4 | ATHP-1 | AT HOOK, PHD finger | 1xC
Ppop-1 | C08C3.3 | MAB-5 | HD - HOX | 1xC | yes | intestine | Cowing and Kenyon, 1992
Ppop-1 | T19E7.2 | SKN-1 | bZIP | 2xC | yes | E lineage | [NAME] et al., 2001
Ppop-1 | ZC204.12 |  | NOVEL | 1xC | yes** | intestine | This study
Ppos-1 | [NAME] | [NAME] | ZF - C2H2 | 4xC; 3xT | yes | pharynx and intestine | [NAME]. 2001
Ppos-1 | F40F8.7 | PQM-1 | ZF - C2H2 | 2xC | yes** | intestine | This study
Ppos-1 | F54F2.5 | ZTF-1 | ZF - C2H2 | 2xT; 7XC | yes** | intestine | This study
Ppos-1 | JC8.6 |  | NOVEL | 11xC | yes** | pharynx and intestine | This study
Ppos-1 | ZC204.12 |  | NOVEL | 3xC | yes** | intestine | This study
Ppos-1 | ZC395.8 |  | ZF - C2H2 | 1xC | yes** | intestine | This study
Ppqn-26 | [NAME] | [NAME] | ZF - C2H2 | Directed | yes | pharynx and intestine | [NAME]. 2001
Ppqn-26 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
Ppqn-60 | C10G8.6 | CEH-34 | HD - SIX | Directed | yes** | pharynx | Dozier et al., 1999
Ppqn-60 | W02A2.7 | [NAME] | ZF - CCCH, 2 domains | Directed | yes** | mutant excess intestine | [NAME] et al., 2000
Ppqn-60 | [NAME] | NHR-8 | ZF - NHR | Directed | yes | intestine | [NAME], 2001
Ppqn-60 | T06C12.7 | NHR-84 | ZF - NHR | Directed | yes | pharynx and intestine | [NAME] et [NAME]. 1999
Ppqn-60 | ZC204.12 |  | NOVEL | 2xC | yes** | intestine | This study
Ppqn-67 | C42D8.4 | ETS-5 | WH - ETS | 1xC; 4xT | no | head neurons | Hart et al., 2000
Ppqn-67 | C48D5.1 | NHR-6 | ZF - NHR | 1xC | no | spermatheca and neurons | Gissendanner et al., 2004
PR03C1.1 | [NAME] | PIE-1 | ZF - CCCH, 2 domains | 3xT | yes | pharynx and intestine in excess | Mello et al., 1992
PR06F6.6 | [NAME] | [NAME] | ZF - C2H2 | Directed | yes | pharynx and intestine | [NAME]. 2001
PR06F6.6 | T18D3.2 | ODR-7 | ZF - NHR | Directed | no | neuronal | [NAME], 1994
PR06F6.6 | Y75B8A.1 | PHP-3 | HD - HOX | [NAME]
PR06F6.6 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
Prnt-1 | Y47D3A.6 | TRA-1 | ZF - C2H2 | 1xC | yes | intestine | Segal et al. 2001
Prnt-1 | T10B11.3 | [NAME] | ZF - C2H2 | 1xC | yes | pharynx expression | www.wormbase.org
Psma-3 | C17H12.9 | CEH-48 | HD - CUT | 1xC; 1xT | no | Male sensory rays + neuronal | www.wormbase.org
Psma-3 | [NAME] | [NAME] | ZF - C2H2 | 3xC; 4xT | yes | pharynx and intestine | [NAME]. 2001
Psma-3 | C27C12.6 | DMD-4 | DM | 1xC | yes | pharynx and pharyngo-intestinal valve | [NAME] and Mango, 2002
Psma-3 | Y48B6A.14 | HMG-1.1 | HMG | 1xC | yes** | ubiquitous, strongest in pharynx | This study
Psma-3 | F18A1.3 | LIR-1 | ZF - C2H2 | 1xC | yes | pharynx and intestine | Dufourcq et al.,  1999
Psma-3 | F44G3.9 | NHR-111 | ZF - NHR | 15xT | no | head neurons | www.wormbase.org
Psma-3 | B0280.4 | ODD-1 | ZF - C2H2 | Directed (2 micron plasmid) | yes | intestine | [NAME], 2004
Psma-3 | [NAME] | SOX-2 | HMG | 1xC | no | hypodermis, nervous system | www.wormbase.org
Psma-3 | F54F2.5 | ZTF-1 | ZF - C2H2 | 4xC; 6xT | yes** | intestine | This study
Psma-3 | ZC204.12 |  | NOVEL | 3xC | yes** | intestine | This study
PT05B4.8 | T27C4.4 | [NAME] | ZF - GATA, MYB | 1xC | yes | ubiquitous | www.wormbase.org
PT05B4.8 | C08F8.8 | NHR-67 | ZF - NHR | 4xT | no | head neurons | Gissendanner et al., 2004
PT05B4.8 | F45B8.4 | PAG-3 | ZF - C2H2 | Directed | no | neuronal | [NAME], 2002
PT05B4.8 | C24H11.3 | TBX-38 | T-BOX | Directed | yes | ABa lineage; mutant pharynx defect | Good et al., 2004
PT14G10.4 | [NAME] | [NAME] | ZF - C2H2 | 4xC | yes | pharynx and intestine | [NAME]. 2001
PT14G10.4 | B0280.8 | NHR-10 | ZF - NHR | Directed | yes | Circumpharyngeal nerve ring + intestinal expresison | www.wormbase.org
PT14G10.4 | F45B8.4 | PAG-3 | ZF - C2H2 | [NAME] | no | neuronal | [NAME], 2002
PT14G10.4 | C24H11.3 | TBX-38 | T-BOX | 1xC | yes | ABa lineage; mutant pharynx defect | Good et al., 2004
PT14G10.4 | T07C4.2 | TBX-8 | T-BOX | 1xC | yes | E and intestine; mutant intestine defect | Pocock et al., 2004
PT14G10.4 | F54F2.5 | ZTF-1 | ZF - C2H2 | 1xC; 1xT | yes** | intestine | This study
PT22C8.3 | T18D3.2 | ODR-7 | ZF - NHR | 1xC | no | neuronal | [NAME], 1994
PT22H9.4 | [NAME] | [NAME] | ZF - C2H2 | 1XC; 2XT | yes | pharynx and intestine | [NAME]. 2001
PT22H9.4 | C38D4.6 | [NAME] | HD - HOX | 1xC | yes | EMS | [NAME] and Kenyon, 1996
PT22H9.4 | Y47H9C.2 |  | ZF DHHC | 1xC
PT23G5.3 | Y41C4A.4 | CRH-1 | bZIP | 7XC; 1XT | yes | ubiquitous | [NAME] et al., 2002
PT23G5.3 | R05D11.1 | DAF-8 | MH1 | 1xT
PT23G5.3 | F52F12.4 | LSL-1 | ZF - C2H2 | 6XC
PT23G5.3 | F49H12.1 | LSY-2 | ZF - C2H2 | 8XC; 1XT
PT23G5.3 | Y42H9AR.3 | ZTF-5 | ZF - C2H2 | 1xT
Ptra-1 | T08H4.3 | AST-1 | WH - ETS | 2xC
Ptra-1 | [NAME] | [NAME] | ZF - C2H2 | 13xC; 6xT | yes | pharynx and intestine | [NAME]. 2001
Ptra-1 | C42D8.4 | ETS-5 | WH - ETS | Directed | no | head neurons | Hart et al., 2000
Ptra-1 | F18A1.2 | LIN-26 | ZF - C2H2 | 6xT | yes | hindgut | Chanal and Labouesse , 1997
Ptra-1 | T05C12.6 | MIG-5 | UNKNOWN* | 2xC | yes** | endoderm formation; EMS and E expression | Bei et al., 2002
Ptra-1 | K06A1.4 | NHR-22 | ZF - NHR | Directed | yes | intestine | [NAME] et [NAME]. 1999
Ptra-1 | B0280.4 | ODD-1 | ZF - C2H2 | Directed (2 micron plasmid) | yes | intestine | [NAME], 2004
Ptra-1 | F40F8.7 | PQM-1 | ZF - C2H2 | 2xC | yes** | intestine | This study
Ptra-1 | R13F6.9 | SMA-3 | MH1 | Directed | yes | pharynx, intestine expression | Wang et al., 2002
Ptra-1 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
Ptra-1 | JC8.6 |  | NOVEL | 14xC | yes** | pharynx and intestine | This study
PW01C9.1 | F31E3.1 | CEH-20 | HD - TALE | 3xC | no | V and P cells, body wall muscle | [NAME] et al., 2005
PW01C9.1 | T28F12.2 | UNC-62 | HD - TALE | 1xC
PW06F12.3 | [NAME] | [NAME] | ZF - C2H2 | 4xC; [NAME] | yes | pharynx and intestine | [NAME]. 2001
PW06F12.3 | Y62E10A.14 |  | NOVEL | Directed
PY38H6C.14 | [NAME] | [NAME] | ZF - C2H2 | 5XC;14XT | yes | pharynx and intestine | [NAME]. 2001
PY38H6C.14 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
PY38H6C.14 | JC8.6 |  | NOVEL | 52XC | yes** | pharynx and intestine | This study
PY49E10.4 | [NAME] | [NAME] | ZF - C2H2 | 1xT | yes | pharynx and intestine | [NAME]. 2001
PY49E10.4 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
Pzag-1 | [NAME] | [NAME] | ZF - C2H2 | Directed | yes | pharynx and intestine | [NAME]. 2001
Pzag-1 | T18D3.2 | ODR-7 | ZF - NHR | Directed | no | neuronal | [NAME], 1994
Pzag-1 | T23G4.1 | TLP-1 | UNKNOWN* | Directed | yes | intestine | Zhao et al., 2002
Pzag-1 | F28F9.1 | ZAG-1 | ZF - C2H2 + HD - ZFHD | Directed | yes | pharyngeal development/ intestine | Wacker et al., 2003/ www.wormbase.org
Pzag-1 | F54F2.5 | ZTF-1 | ZF - C2H2 | Directed | yes** | intestine | This study
PZK287.1 | W07G1.3 | ZIP-3 | bZIP | 3xC
PZK682.5 | F44G3.9 | NHR-111 | ZF - NHR | 3xT | no | head neurons | www.wormbase.org
PZK682.5 | F13G3.1 | ZTF-2 | ZF - C2H2 | 1xT | yes** | pharynx and hindgut | This study
PZK682.5 | ZC395.8 |  | ZF - C2H2 | 1xC | yes** | intestine | This study
Pztf-4 | C17H12.9 | CEH-48 | HD - CUT | 9XT | no | Male sensory rays + neuronal | www.wormbase.org
Pztf-4 | F43G9.11 | CES-1 | ZF - C2H2 | Directed | yes | pharyngeal primordium | Ellis and Horvitz, 1991
Pztf-4 | [NAME] | [NAME] | ZF - C2H2 | 1xT | yes | pharynx and intestine | [NAME]. 2001
Pztf-4 | F31E8.3 | TAB-1 | HD - NK | 5XT | no | touch neurons | www.wormbase.org
Pztf-4 | F54F2.5 | ZTF-1 | ZF - C2H2 | 4xT | yes** | intestine | This study
Pztf-4 | D2021.2 |  | ZF DHHC | 1xT
Pztf-4 | JC8.6 |  | NOVEL | Directed | yes** | pharynx and intestine | This study
Legend
C | From AD-wrmcDNA library
T | From AD-TF mini-library
Directed | Interaction detected via directed Y1H experiment
 | No information available
* | Annotated in WormBase as a TF, but no DNA-binding domain present
** | Not expression pattern based, novel, or found in this study, and therefore not included in expression pattern list (Table S4)
*** | Did not retest by ChIP in yeast