Spreadsheet: 3feab803-10f6-43a1-a075-8329872ef033
Sheet: Table S3

Table S3. Annotation of RBPJ binding peaks in mitotic F9 cells
[NAME] (cmd=Peak/Mitosis.CBF.rpm.peak mm9) | Chr | Start | End | Strand | Peak Score | Focus Ratio/Region Size | Annotation | Detailed Annotation | Distance to TSS | Nearest PromoterID | [NAME] | Nearest [NAME] | Nearest Refseq | Nearest Ensembl | [NAME] | [NAME] | [NAME]
chr17-1 | chr17 | 39980174 | 39980376 | + | 282.5 | 0.614 | non-coding (NR_046233, exon 1 of 1) | non-coding (NR_046233, exon 1 of 1) | 333 | NR_046233 | 100861531 |  | NR_046233 |  | Rn45s | - | 45S pre-ribosomal RNA
[NAME] | chrX | 166430591 | 166430793 | + | 85.2 | 0.548 | Intergenic | Intergenic | -13843 | NR_029457 | 654820 | Mm.467605 | NM_001039559 |  | G530011O06Rik | - | RIKEN cDNA [NAME] gene
chr17-6 | chr17 | 3082281 | 3082483 | + | 74.3 | 0.588 | [NAME] (NR_003519, intron 1 of 7) | [NAME] (NR_003519, intron 1 of 7) | 1801 | NR_003519 | 328734 | Mm.335641 | NR_003519 |  | Pisd-ps2 | D030013I16Rik | phosphatidylserine decarboxylase, pseudogene 2
chr11-26 | chr11 | 3027110 | 3027312 | + | 70.6 | 0.673 | [NAME] (NR_003518, intron 2 of 6) | [NAME] (NR_003518, intron 2 of 6) | 3181 | NR_003518 | 66776 | Mm.489357 | NR_003518 |  | Pisd-ps3 | 4933439C20Rik|MGC103350|MGC65558 | phosphatidylserine decarboxylase, pseudogene 3
chr11-49 | chr11 | 108873205 | 108873407 | + | 55.3 | 0.725 | Intergenic | LSU-rRNA_Hsa|rRNA|rRNA | 91643 | NM_015732 | 12006 | [NAME] | NM_015732 | ENSMUSG00000000142 | Axin2 | Axi1|Axil|Conductin | axin2
chr3-2 | chr3 | 5860553 | 5860755 | + | 43.7 | 0.758 | Intergenic | LSU-rRNA_Hsa|rRNA|rRNA | -284415 | NM_001163302 | 19302 | Mm.132336 | NM_001163304 | ENSMUSG00000040374 | Pxmp3 | D3Ertd138e|PAF-1|PMP35|Pex2 | peroxisomal membrane protein 3
chr1-2 | chr1 | 197067832 | 197068034 | + | 41.5 | 0.714 | Intergenic | CpG | -65024 | NM_007758 | 12902 | Mm.235387 | NM_007758 | ENSMUSG00000026616 | Cr2 | C3DR|CD21|CD35|Cr-1|Cr-2|Cr1|MGC130295 | complement receptor 2
chr13-3 | chr13 | 44964887 | 44965089 | + | 37.9 | 0.925 | intron (NM_021878, intron 4 of 18) | LSU-rRNA_Hsa|rRNA|rRNA | 132477 | NM_025772 | 94245 | Mm.352311 | NM_025772 | ENSMUSG00000057531 | Dtnbp1 | 5430437B18Rik|AW048963|dysbindin|sdy | [NAME] 1
chr10-2 | chr10 | 57686672 | 57686874 | + | 37.9 | 0.828 | Intergenic | Intergenic | 8650 | NM_001081954 | 664783 | Mm.482575 | NM_001081954 |  | Dux | AW822073|Dux4|Duxbl|EG664783 | double homeobox
chr8-26 | chr8 | 19717022 | 19717224 | + | 37.1 | 0.761 | Intergenic | L1VL1|LINE|L1 | -12453 | NM_001039553 | 626415 | Mm.425517 | NM_001039553 | ENSMUSG00000074456 | 4930467E23Rik | ENSMUSG00000074453|OTTMUSG00000018948|TSAP | RIKEN cDNA 4930467E23 gene
chr8-27 | chr8 | 20032646 | 20032848 | + | 37.1 | 0.623 | Intergenic | L1Md_F|LINE|L1 | -12355 | NR_028428 | 381598 | Mm.483074 | NM_001024708 |  | 2610005L07Rik | 2810038F24Rik|6720476A01Rik | cadherin 11 pseudogene
chr17-8 | chr17 | 13498918 | 13499120 | + | 34.9 | 0.661 | Intergenic | (CTGTG)n|Simple_repeat|Simple_repeat | -48419 | NM_001167578 | 100041352 | Mm.264651 | NM_001167578 | ENSMUSG00000052469 | Tcp10c | D17Leh66C|D17Leh66ca|Gm9880|T66C-a|Tcp-10c | t-complex protein 10c
chr17-9 | chr17 | 13744981 | 13745183 | + | 34.2 | 0.697 | intron (NR_045437, intron 1 of 3) | (CTGTG)n|Simple_repeat|Simple_repeat | 1878 | NR_045436 | 72578 | Mm.46549 | NR_045436 |  | 2700054A10Rik | - | RIKEN cDNA 2700054A10 gene
chr7-1 | chr7 | 12595997 | 12596199 | + | 32.8 | 0.477 | Intergenic | Intergenic | -30550 | NM_001166731 | 628946 | Mm.484974 | NM_001166731 | ENSMUSG00000091201 | Vmn1r77 | Gm6935 | vomeronasal 1 receptor 77
chr5-3 | chr5 | 33080268 | 33080470 | + | 32 | 0.837 | intron (NM_177298, intron 7 of 7) | intron (NM_177298, intron 7 of 7) | 47906 | NM_177298 | 320951 | Mm.273765 | NM_177298 | ENSMUSG00000023452 | Pisd | 9030221M09Rik | phosphatidylserine decarboxylase
chr8-37 | chr8 | 86186293 | 86186495 | + | 30.6 | 0.86 | [NAME] (NM_018771, intron 4 of 6) | [NAME] (NM_018771, intron 4 of 6) | -4145 | NM_013641 | 19216 | Mm.474430 | NM_013641 | ENSMUSG00000019464 | Ptger1 | 42kDa|EP1|Ptgerep1 | prostaglandin E receptor 1 (subtype EP1)
chr17-13 | chr17 | 13743517 | 13743719 | + | 28.4 | 0.78 | intron (NR_045437, intron 1 of 3) | (CTGTG)n|Simple_repeat|Simple_repeat | 3342 | NR_045436 | 72578 | Mm.46549 | NR_045436 |  | 2700054A10Rik | - | RIKEN cDNA 2700054A10 gene
chr8-44 | chr8 | 19698806 | 19699008 | + | 26.9 | 0.75 | Intergenic | Intergenic | -30669 | NM_001039553 | 626415 | Mm.425517 | NM_001039553 | ENSMUSG00000074456 | 4930467E23Rik | ENSMUSG00000074453|OTTMUSG00000018948|TSAP | RIKEN cDNA 4930467E23 gene
chr5-4 | chr5 | 33072849 | 33073051 | + | 26.2 | 0.787 | Intergenic | Intergenic | 55325 | NM_177298 | 320951 | Mm.273765 | NM_177298 | ENSMUSG00000023452 | Pisd | 9030221M09Rik | phosphatidylserine decarboxylase
chr10-3 | chr10 | 80363592 | 80363794 | + | 25.5 | 0.833 | promoter-TSS (NM_013895) | promoter-TSS (NM_013895) | 21 | NM_013895 | 30055 | Mm.142132 | NM_013895 | ENSMUSG00000020219 | Timm13 | D10Ertd378e|Tim9|Timm9 | translocase of inner mitochondrial membrane 13 homolog (yeast)
chr8-50 | chr8 | 19893837 | 19894039 | + | 24.8 | 0.895 | promoter-TSS (NR_030708) | promoter-TSS (NR_030708) | -928 | NR_030708 | 547150 | Mm.359054 | NR_030708 |  | 6820431F20Rik | - | cadherin 11 pseudogene
chr1-10 | chr1 | 85268814 | 85269016 | + | 24 | 0.744 | Intergenic | Intergenic | -1774 | NM_001037909 | 620078 | Mm.461248 | NM_001037909 | ENSMUSG00000052477 | C130026I21Rik | 4930565N07Rik|OTTMUSG00000029174 | RIKEN cDNA C130026I21 gene
chr13-5 | chr13 | 23493800 | 23494002 | + | 24 | 0.64 | Intergenic | Intergenic | 21834 | NM_013924 | 30946 | Mm.292094 | NM_013924 | ENSMUSG00000036376 | Abt1 | - | activator of basal transcription 1
chr12-7 | chr12 | 116859621 | 116859823 | + | 21.8 | 0.7 | Intergenic | RMER13B|LTR|ERVK | -426213 | NM_001004066 | 56220 | Mm.254997 | NM_001004066 | ENSMUSG00000042063 | Zfp386 | KIAA4205|Kzf1|mKIAA4205 | zinc finger protein 386 (Kruppel-like)
chr18-10 | chr18 | 82390311 | 82390513 | + | 21.8 | 0.769 | Intergenic | Intergenic | 185757 | NM_008082 | 14427 | Mm.6219 | NM_008082 | ENSMUSG00000024553 | Galr1 | Galnr1 | galanin receptor 1
chr6-6 | chr6 | 136951435 | 136951637 | + | 21.8 | 0.652 | Intergenic | (TG)n|Simple_repeat|Simple_repeat | 48492 | NM_023898 | 78600 | Mm.290622 | NM_023898 | ENSMUSG00000064330 | Pde6h | A930033D18Rik|PDEgamma | phosphodiesterase 6H, cGMP-specific, cone, gamma
chr13-6 | chr13 | 13017971 | 13018173 | + | 21.1 | 0.622 | Intergenic | RLTR46|LTR|ERVK | 79525 | NM_031191 | 18811 | Mm.88796 | NM_031191 | ENSMUSG00000079092 | Prl2c2 | MRP-1|PLF-1|Plf|Plf1 | [NAME] family 2, subfamily c, member 2
chr12-8 | chr12 | 111710575 | 111710777 | + | 21.1 | 0.558 | intron (NM_001135001, intron 3 of 13) | RLTR23|LTR|ERV1 | -13273 | NM_001081458 | 26931 | Mm.458056 | NM_001037934 | ENSMUSG00000017843 | [NAME] | 2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044 | protein phosphatase 2, regulatory subunit B (B56), gamma isoform
chr11-83 | chr11 | 98063926 | 98064128 | + | 21.1 | 0.794 | promoter-TSS (NM_026952) | promoter-TSS (NM_026952) | -592 | NM_001109628 | 69131 | Mm.488484 | NM_001109626 | ENSMUSG00000003119 | Cdk12 | 1810022J16Rik|AI646528|Crk7|Crkrs|D11Ertd752e|MGC141525|Pksc | cyclin-dependent kinase 12
chr18-11 | chr18 | 3118006 | 3118208 | + | 20.4 | 0.545 | Intergenic | Intergenic | 5305 | NM_001167539 | 100312476 | Mm.480293 | NM_001167539 | ENSMUSG00000091539 | Vmn1r238 | - | vomeronasal 1 receptor, 238
chr13-7 | chr13 | 66816219 | 66816421 | + | 20.4 | 0.867 | Intergenic | Intergenic | 189966 | NM_026219 | 67530 | Mm.379136 | NM_026219 | ENSMUSG00000021520 | Uqcrb | 2210415M14Rik|MGC107639|MGC35665|QP-C|QPC|UQBC|UQBP|UQPC | ubiquinol-cytochrome c reductase binding protein
chr4-2 | chr4 | 3092287 | 3092489 | + | 19.7 | 0.893 | Intergenic | Intergenic | -6842 | NM_001167534 | 100312470 | Mm.480297 | NM_001167534 | ENSMUSG00000078367 | Vmn1r2 | Gm11776|OTTMUSG00000004179 | vomeronasal 1 receptor 2
chr6-11 | chr6 | 145159389 | 145159591 | + | 19.7 | 0.667 | promoter-TSS (NM_177222) | promoter-TSS (NM_177222) | 0 | NM_177222 | 320662 | Mm.207779 | NM_177222 | ENSMUSG00000043541 | [NAME] | A230084G12Rik|Las1 | cancer susceptibility candidate 1
chr6-10 | chr6 | 136752896 | 136753098 | + | 19.7 | 0.848 | promoter-TSS (NM_175652) | promoter-TSS (NM_175652) | -45 | NM_175652 | 320332 | Mm.489077 | NM_175652 | ENSMUSG00000068851 | Hist4h4 | B130044J01Rik | histone cluster 4, H4
chr12-10 | chr12 | 111935357 | 111935559 | + | 19.7 | 0.727 | promoter-TSS (NM_010480) | promoter-TSS (NM_010480) | -853 | NM_010480 | 15519 | Mm.486334 | NM_010480 | ENSMUSG00000021270 | Hsp90aa1 | 86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4 | heat shock protein 90, alpha (cytosolic), class A member 1
chr16-3 | chr16 | 57391643 | 57391845 | + | 19.7 | 0.564 | intron (NM_001040397, intron 1 of 4) | LSU-rRNA_Hsa|rRNA|rRNA | 38354 | NM_001040397 | 78749 | Mm.328360 | NM_001040397 | ENSMUSG00000043336 | Filip1l | 4631422O05Rik|Doc1 | filamin A interacting protein 1-like
chr6-7 | chr6 | 124870154 | 124870356 | + | 19.7 | 0.628 | Intergenic | Intergenic | -2291 | NM_026988 | 69202 | [NAME] | NM_026988 | ENSMUSG00000030122 | Ptms | 2610009E16Rik | [NAME]
chr12-9 | chr12 | 111656288 | 111656490 | + | 19.7 | 0.692 | Intergenic | Intergenic | -29000 | NM_001135001 | 26931 | Mm.458056 | NM_001037934 | ENSMUSG00000017843 | [NAME] | 2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044 | protein phosphatase 2, regulatory subunit B (B56), gamma isoform
chr7-2 | chr7 | 7252415 | 7252617 | + | 19.7 | 0.689 | promoter-TSS (NM_011334) | promoter-TSS (NM_011334) | -294 | NM_011334 | 12727 | Mm.297883 | NM_011334 | ENSMUSG00000000605 | Clcn4-2 | Clc4-2|Clcn4|MGC117899 | chloride channel 4-2
chr12-11 | chr12 | 111829794 | 111829996 | + | 18.9 | 0.688 | non-coding (NR_033340, exon 1 of 1) | non-coding (NR_033340, exon 1 of 1) | 311 | NR_033340 | 319786 | Mm.129691 | NR_033340 |  | B930059L03Rik | - | [NAME] cDNA B930059L03 gene
chr11-85 | chr11 | 98798668 | 98798870 | + | 18.9 | 0.828 | promoter-TSS (NM_009024) | promoter-TSS (NM_009024) | -241 | [NAME] | 19401 | Mm.439744 | NM_001176528 | ENSMUSG00000037992 | Rara | Nr1b1|RAR|RARalpha1 | retinoic acid receptor, alpha
chr6-12 | chr6 | 122760799 | 122761001 | + | 18.9 | 0.667 | Intergenic | Intergenic | -9302 | NM_021899 | 60611 | Mm.87142 | NM_021899 | ENSMUSG00000003154 | Foxj2 | Fhx | forkhead box J2
chr17-15 | chr17 | 3352937 | 3353139 | + | 18.9 | 0.677 | intron (NM_001122998, intron 1 of 26) | intron (NM_001122998, intron 1 of 26) | 26465 | NM_001122998 | 24001 | Mm.137134 | NM_001122998 | ENSMUSG00000023800 | Tiam2 | 3000002F19Rik|STEF|mKIAA2016 | T cell lymphoma invasion and metastasis 2
chr11-86 | chr11 | 116636182 | 116636384 | + | 18.9 | 0.632 | [NAME] 1 of 8) | [NAME] 1 of 8) | 538 | NM_011371 | 20445 | [NAME] | NM_011371 | ENSMUSG00000009588 | St6galnac1 | Siat7a | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
chr4-3 | chr4 | 118744408 | 118744610 | + | 18.2 | 0.579 | Intergenic | Intergenic | -36841 | NM_011400 | 20525 | Mm.21002 | NM_011400 | ENSMUSG00000028645 | Slc2a1 | Glut-1|Glut1 | solute carrier family 2 (facilitated glucose transporter), member 1
chr11-89 | chr11 | 116627958 | 116628160 | + | 18.2 | 0.719 | [NAME] intron 5 of 8) | [NAME] intron 5 of 8) | 8762 | NM_011371 | 20445 | [NAME] | NM_011371 | ENSMUSG00000009588 | St6galnac1 | Siat7a | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
chr12-13 | chr12 | 109571631 | 109571833 | + | 18.2 | 0.758 | promoter-TSS (NM_010010) | promoter-TSS (NM_010010) | -859 | NM_010010 | 13116 | Mm.41911 | NM_010010 | ENSMUSG00000021259 | Cyp46a1 | Cyp46 | cytochrome P450, family 46, subfamily a, polypeptide 1
chrX-12 | chrX | 131120157 | 131120359 | + | 18.2 | 0.735 | promoter-TSS (NM_019865) | promoter-TSS (NM_019865) | 65 | NM_019865 | 19982 | Mm.286408 | NM_019865 | ENSMUSG00000079435 | [NAME] | L44L|Rpl44 | ribosomal protein L36A
chr18-12 | chr18 | 36719798 | 36720000 | + | 18.2 | 0.722 | promoter-TSS (NM_175375) | promoter-TSS (NM_175375) | -358 | NM_175375 | 108857 | Mm.482287 | NM_175375 | ENSMUSG00000024483 | Ankhd1 | 1110004O12Rik|4933432B13Rik|9130019P20Rik|A530027J04Rik|A630021B20Rik|AA571404|FLJ00246|Mask|mFLJ00246|mKIAA1085 | ankyrin repeat and KH domain containing 1
chr17-16 | chr17 | 84865043 | 84865245 | + | 18.2 | 0.778 | [NAME] (NM_183021, intron 1 of 37) | CpG | 404 | NM_183021 | 240174 | Mm.246767 | NM_177826 | ENSMUSG00000024251 | Thada | 6530405K19|A930021O22|AU019899|BC052885|GITA | thyroid adenoma associated
chr3-5 | chr3 | 88314101 | 88314303 | + | 18.2 | 0.625 | Intergenic | Intergenic | -6948 | NM_001002011 | 16905 | Mm.471227 | NM_001002011 | ENSMUSG00000028063 | [NAME] | [NAME] | lamin A
chr4-4 | chr4 | 151236031 | 151236233 | + | 18.2 | 0.852 | promoter-TSS (NM_001081557) | promoter-TSS (NM_001081557) | -255 | NM_001081557 | 100072 | Mm.318846 | NM_001166021 | ENSMUSG00000014592 | Camta1 | 1810059M14Rik|2310058O09Rik|AI316882|AW987475|KIAA0833|mKIAA0833 | [NAME] transcription activator 1
chr6-13 | chr6 | 136280560 | 136280762 | + | 18.2 | 0.828 | TTS (NM_001142734) | TTS (NM_001142734) | 3104 | NM_001142734 | 668137 | Mm.417085 | NM_001142734 | [NAME] | Gm8994 | B020013A22Rik|EG668137 | predicted gene 8994
chr12-14 | chr12 | 112217523 | 112217725 | + | 17.5 | 0.742 | promoter-TSS (NM_175207) | promoter-TSS (NM_175207) | -393 | NM_175207 | 74251 | Mm.250989 | NM_175207 | ENSMUSG00000037904 | Ankrd9 | 2500003O20Rik | ankyrin repeat domain 9
chr6-15 | chr6 | 117829121 | 117829323 | + | 17.5 | 0.778 | Intergenic | Intergenic | 16127 | NM_001001792 | 22685 | Mm.249661 | NM_001001792 | ENSMUSG00000042097 | Zfp239 | Mok-2|Mok2|Znf239 | zinc finger protein 239
chr6-14 | chr6 | 113025923 | 113026125 | + | 17.5 | 0.8 | intron (NR_027009, intron 1 of 1) | intron (NR_027009, intron 1 of 1) | 1214 | NR_027010 | 14910 | [NAME] | NR_027008 |  | Gt(ROSA)26Sor | AV258896|Gtrgeo26|Gtrosa26|R26|ROSA26 | gene trap ROSA 26, [NAME]
chr8-75 | chr8 | 113579134 | 113579336 | + | 17.5 | 0.821 | 3' UTR (NM_146217, exon 21 of 21) | 3' UTR (NM_146217, exon 21 of 21) | -1004 | NM_028274 | 72544 | Mm.334810 | NM_028274 |  | Exosc6 | 2610510N21Rik|C76919|MGC151362|Mtr3 | exosome component 6
chr12-19 | chr12 | 109514943 | 109515145 | + | 16.7 | 0.767 | Intergenic | Intergenic | -1417 | NM_001159910 | 668158 | Mm.482792 | NM_001159910 | ENSMUSG00000084883 | [NAME] | EG668158|Gm265|Gm9010 | coiled-coil domain containing 85C
chr5-11 | chr5 | 115637425 | 115637627 | + | 16.7 | 0.562 | Intergenic | Intergenic | -1396 | NM_013879 | 29867 | [NAME] | NM_013879 | ENSMUSG00000029544 | Cabp1 | - | calcium binding protein 1
chr12-20 | chr12 | 114333746 | 114333948 | + | 16.7 | 0.821 | Intergenic | Intergenic | -2642 | NM_054081 | 116870 | Mm.212577 | NM_054081 | ENSMUSG00000021144 | Mta1 | MGC118456 | metastasis associated 1
chr4-6 | chr4 | 149184423 | 149184625 | + | 16.7 | 0.719 | Intergenic | Intergenic | -36148 | NM_027460 | 70556 | Mm.41877 | XM_003689205 | ENSMUSG00000028982 | Slc25a33 | 5730438N18Rik|MGC4399|Pnc1 | solute carrier family 25, member 33
chr13-11 | chr13 | 23504288 | 23504490 | + | 16.7 | 0.722 | Intergenic | Intergenic | 11346 | NM_013924 | 30946 | Mm.292094 | NM_013924 | ENSMUSG00000036376 | Abt1 | - | activator of basal transcription 1
chr4-5 | chr4 | 133951993 | 133952195 | + | 16.7 | 0.759 | promoter-TSS (NM_133880) | promoter-TSS (NM_133880) | -181 | NM_133880 | 100163 | Mm.22116 | NM_133880 | ENSMUSG00000037366 | Pafah2 | 2310074E22Rik|AI507170 | platelet-activating factor acetylhydrolase 2
chr12-17 | chr12 | 88238371 | 88238573 | + | 16.7 | 0.846 | Intergenic | Intergenic | -12708 | NM_145836 | 238330 | Mm.248358 | NM_145836 | ENSMUSG00000034168 | 6430527G18Rik | Eap1|Irf2bpl | RIKEN cDNA 6430527G18 gene
chr8-79 | chr8 | 116893608 | 116893810 | + | 16.7 | 0.704 | [NAME]NM_173016, intron 7 of 8) | [NAME]NM_173016, intron 7 of 8) | -18331 | NR_045831 | 71122 |  | NR_045831 |  | 4933408N05Rik | - | RIKEN cDNA 4933408N05 gene
chr11-90 | chr11 | 69232474 | 69232676 | + | 16.7 | 0.774 | Intergenic | Intergenic | -5398 | NM_001017426 | 216850 | Mm.472522 | NM_001017426 | ENSMUSG00000018476 | Kdm6b | 1700064E03Rik|BC038313|Jmjd3|KIAA0346|mKIAA0346 | [NAME] lysine (K)-specific demethylase 6B
chr14-6 | chr14 | 98567024 | 98567226 | + | 16.7 | 0.571 | [NAME] (NM_001038610, intron 1 of 10) | [NAME] (NM_001038610, intron 1 of 10) | 1637 | NM_001038610 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr12-25 | chr12 | 107371544 | 107371746 | + | 16 | 0.706 | Intergenic | Intergenic | 123172 | NM_001029843 | 22367 | Mm.2981 | NM_001029843 | ENSMUSG00000021115 | Vrk1 | 51PK | vaccinia related kinase 1
chr7-3 | chr7 | 30880184 | 30880386 | + | 16 | 0.84 | [NAME] (NM_011981, intron 1 of 2) | [NAME] (NM_011981, intron 1 of 2) | 190 | NM_011981 | 26466 | Mm.195092 | NM_011981 | ENSMUSG00000049421 | Zfp260 | AI480997|Ozrf1|PEX1|Zfp63|Znf260 | zinc finger protein 260
chr4-10 | chr4 | 116804410 | 116804612 | + | 16 | 0.692 | exon (NM_013807, exon 6 of 15) | exon (NM_013807, exon 6 of 15) | 2046 | NM_013807 | 12795 | Mm.259022 | NM_013807 | ENSMUSG00000028680 | Plk3 | Cnk|Fnk|PRK | polo-like kinase 3 (Drosophila)
chr17-21 | chr17 | 30713475 | 30713677 | + | 16 | 0.719 | promoter-TSS (NM_027060) | promoter-TSS (NM_027060) | -344 | NM_027060 | 224671 | Mm.41220 | NM_027060 | ENSMUSG00000062202 | Btbd9 | 1700023F20Rik|4930402L05|AI464421 | BTB (POZ) domain containing 9
chr5-15 | chr5 | 124199758 | 124199960 | + | 16 | 0.677 | promoter-TSS (NM_025438) | promoter-TSS (NM_025438) | 124 | NM_001042421 | 208628 | Mm.441089 | NM_001042421 | ENSMUSG00000029414 | Kntc1 | D330012D13 | kinetochore associated 1
chr8-85 | chr8 | 82235726 | 82235928 | + | 16 | 0.759 | promoter-TSS (NM_015751) | promoter-TSS (NM_015751) | 108 | NM_026904 | 68999 | Mm.257445 | NM_026904 | ENSMUSG00000036977 | Anapc10 | 1500026N15Rik|A830003M23Rik|APC10 | anaphase promoting complex subunit 10
chr12-26 | chr12 | 109242614 | 109242816 | + | 16 | 0.677 | Intergenic | Intergenic | -1091 | NM_021399 | 58208 | Mm.392694 | NM_001079883 | ENSMUSG00000048251 | Bcl11b | 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 | B cell leukemia/lymphoma 11B
chr8-87 | chr8 | 121936693 | 121936895 | + | 16 | 0.704 | Intergenic | Intergenic | 18002 | NM_019966 | 56690 | Mm.423037 | NM_019966 | ENSMUSG00000074064 | [NAME] | AI324784|Mcd | malonyl-CoA decarboxylase
chr6-16 | chr6 | 29698321 | 29698523 | + | 16 | 0.84 | intron (NM_176996, intron 1 of 11) | (CTGTG)n|Simple_repeat|Simple_repeat | 12925 | NM_176996 | 319757 | Mm.29279 | NM_176996 | ENSMUSG00000001761 | [NAME] | E130215L21Rik|Smoh|bnb|smoothened | smoothened homolog (Drosophila)
chr19-3 | chr19 | 12040010 | 12040212 | + | 16 | 0.645 | promoter-TSS (NM_001033174) | promoter-TSS (NM_001033174) | -223 | NM_001033174 | 76303 | Mm.291279 | NM_001033174 | ENSMUSG00000024687 | Osbp | 1110018F06Rik|AW559088|KIAA4220|mKIAA4220 | [NAME] protein
chr12-29 | chr12 | 112510747 | 112510949 | + | 16 | 0.786 | [NAME], intron 3 of 11) | B2_Mm2|SINE|B2 | 1526 | NM_033603 | 93835 | Mm.197639 | NM_033603 | ENSMUSG00000021278 | [NAME] | 5033428N14Rik|AV002116 | amnionless
chr12-22 | chr12 | 87860246 | 87860448 | + | 16 | 0.808 | 3' UTR (NM_011934, exon 7 of 7) | 3' UTR (NM_011934, exon 7 of 7) | 97753 | NM_011934 | 26380 | Mm.235550 | NM_001159500 | ENSMUSG00000021255 | Esrrb | Err2|Errb|Estrrb|Nr3b2 | estrogen related receptor, beta
chr1-37 | chr1 | 173461553 | 173461755 | + | 16 | 0.471 | exon (NM_010584, exon 4 of 8) | exon (NM_010584, exon 4 of 8) | 3771 | NM_010584 | 16429 | Mm.247426 | NM_010584 | ENSMUSG00000038209 | [NAME] | IntL|Itln|Itln2|Itln5|Itlna|Lfr|MGC183671|MGC183706 | intelectin 1 (galactofuranose binding)
chr17-20 | chr17 | 24042177 | 24042379 | + | 16 | 0.667 | Intergenic | Intergenic | 6589 | NM_001039238 | 630537 | Mm.436677 | XM_003689307 | ENSMUSG00000067843 | Dcpp2 | [NAME] | demilune cell and parotid protein 2
chr5-13 | chr5 | 26397813 | 26398015 | + | 16 | 0.629 | Intergenic | Intergenic | 17890 | NM_001177579 | 100039045 | Mm.375471 | NM_001177579 | ENSMUSG00000073116 | Gm10471 | ENSMUSG00000073116|MGC178653 | predicted gene 10471
chr4-9 | chr4 | 108672996 | 108673198 | + | 16 | 0.767 | promoter-TSS (NM_146150) | promoter-TSS (NM_146150) | -313 | NM_146150 | 230598 | Mm.442231 | NM_146150 | ENSMUSG00000053510 | Nrd1 | 2600011I06Rik|AI875733|MGC25477|NRD-C | nardilysin, N-arginine dibasic convertase, NRD convertase 1
chr10-6 | chr10 | 20765986 | 20766188 | + | 16 | 0.87 | [NAME] (NM_026203, intron 19 of 23) | [NAME] (NM_026203, intron 19 of 23) | 5461 | NM_001177776 | 52906 | Mm.486431 | NM_001177776 | ENSMUSG00000019986 | Ahi1 | 1700015F03Rik|Ahi-1|D10Bwg0629e | [NAME] helper integration site 1
chr8-83 | chr8 | 23521756 | 23521958 | + | 16 | 0.75 | promoter-TSS (NM_020560) | promoter-TSS (NM_020560) | 45 | NM_020560 | 57312 | Mm.289402 | NM_020560 | ENSMUSG00000031533 | Mrps31 | 1500002D03Rik|AA960481|Imogen38|Imogen44 | mitochondrial ribosomal protein [NAME]
chr11-95 | chr11 | 69445958 | 69446160 | + | 16 | 0.846 | promoter-TSS (NM_011814) | promoter-TSS (NM_011814) | -414 | NM_011814 | 23879 | Mm.41930 | NM_011814 | ENSMUSG00000018765 | Fxr2 | Fxr2h | fragile X mental retardation, autosomal homolog 2
chr12-30 | chr12 | 113962336 | 113962538 | + | 16 | 0.852 | [NAME] (NM_001024602, intron 1 of 18) | MER45A|DNA|Tip100 | 2052 | NM_001024602 | 217882 | Mm.23689 | NM_001024602 | ENSMUSG00000072825 | AW555464 | AI466840|Kiaa0284|mKIAA0284 | expressed sequence AW555464
chr8-89 | chr8 | 129469885 | 129470087 | + | 16 | 0.76 | promoter-TSS (NM_024214) | promoter-TSS (NM_024214) | -165 | NM_024214 | 67952 | Mm.489811 | NM_024214 | ENSMUSG00000058779 | Tomm20 | 1810060K07Rik|BB284719|Gm19268|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 | translocase of outer mitochondrial membrane 20 homolog (yeast)
chr12-23 | chr12 | 101202565 | 101202767 | + | 16 | 0.778 | promoter-TSS (NM_001164427) | promoter-TSS (NM_001164427) | -43 | NM_001164427 | 217826 | Mm.312335 | NM_001164426 | ENSMUSG00000045404 | Kcnk13 | BB085247|F730021E22Rik|Gm1570|Gm1685|MGC31053 | potassium channel, subfamily K, member 13
chr13-13 | chr13 | 21801867 | 21802069 | + | 16 | 0.852 | Intergenic | Intergenic | 6044 | NM_178199 | 319185 | Mm.377880 | NM_178199 | ENSMUSG00000069314 | Hist1h2bl | H2b-291a | histone cluster 1, H2bl
chr4-8 | chr4 | 108506651 | 108506853 | + | 16 | 0.759 | promoter-TSS (NM_025334) | promoter-TSS (NM_025334) | -531 | NM_025334 | 66073 | Mm.159965 | NM_025334 | ENSMUSG00000028567 | Txndc12 | 0610040B21Rik|ERp16|ERp19 | thioredoxin domain containing 12 (endoplasmic reticulum)
chr6-18 | chr6 | 124797372 | 124797574 | + | 16 | 0.8 | [NAME], intron 9 of 14) | [NAME], intron 9 of 14) | -7180 | NM_013530 | 14695 | Mm.68889 | NM_013530 | ENSMUSG00000023439 | Gnb3 | Gnb-3 | guanine nucleotide binding protein (G protein), beta 3
chr5-14 | chr5 | 110877992 | 110878194 | + | 16 | 0.7 | promoter-TSS (NM_001142642) | promoter-TSS (NM_001142642) | -571 | NM_001142642 | 381668 | Mm.472278 | NM_001142642 | ENSMUSG00000043323 | Fbrsl1 | 2410025L10Rik|AI467568|Gm1049|mKIAA1545 | fibrosin-like 1
chr4-11 | chr4 | 117157657 | 117157859 | + | 16 | 0.786 | intron (NM_025739, intron 2 of 14) | intron (NM_025739, intron 2 of 14) | 11762 | NM_025739 | 66743 | Mm.318331 | NM_025739 | ENSMUSG00000028677 | Rnf220 | 4732477A13|4931406I20Rik|5730503K05Rik|AV302541 | ring finger protein 220
chr11-94 | chr11 | 3192881 | 3193083 | + | 16 | 0.7 | intron (NM_019574, intron 1 of 3) | intron (NM_019574, intron 1 of 3) | 2522 | NM_019574 | 56218 | Mm.486715 | NM_001253690 | ENSMUSG00000020453 | Patz1 | 8430401L15Rik|AI447519|Mazr|Patz|Zfp278 | POZ (BTB) and AT hook containing zinc finger 1
chr8-81 | chr8 | 12873345 | 12873547 | + | 16 | 0.645 | Intergenic | Intergenic | -41527 | NR_045775 | 100504249 |  | NR_045775 |  | Gm15350 | OTTMUSG00000020611 | predicted gene 15350
chr8-88 | chr8 | 123033858 | 123034060 | + | 16 | 0.75 | intron (NM_198671, intron 1 of 15) | intron (NM_198671, intron 1 of 15) | 21193 | NM_198671 | 382034 | [NAME] | NM_001145896 | ENSMUSG00000031822 | Gse1 | 2210013I18Rik|MGC58013|mKIAA0182 | genetic suppressor element 1
chr8-82 | chr8 | 22158319 | 22158521 | + | 16 | 0.808 | Intergenic | L1_Mus2|LINE|L1 | -6804 | NM_183253 | 66298 | [NAME] | NM_183253 | ENSMUSG00000074447 | Defa21 | 2010016B13Rik|Defcr21 | [NAME], alpha, 21
chr6-17 | chr6 | 113711847 | 113712049 | + | 16 | 0.677 | [NAME] (NM_009723, intron 17 of 21) | [NAME] (NM_009723, intron 17 of 21) | -21273 | NM_024206 | 110379 | Mm.29296 | NM_024206 | ENSMUSG00000030298 | Sec13 | 1110003H02Rik|Sec13l1|Sec13r | SEC13 homolog (S. cerevisiae)
chr10-8 | chr10 | 80641775 | 80641977 | + | 15.3 | 0.704 | TTS (NR_028549) | TTS (NR_028549) | 170 | NR_028549 | 100217454 |  | NR_028549 |  | Snord37 | MBII-376 | small nucleolar RNA, C/D box 37
chr18-14 | chr18 | 82981907 | 82982109 | + | 15.3 | 0.769 | Intergenic | Intergenic | -53577 | NR_045389 | 76961 | [NAME] | NR_045389 |  | 2210420H20Rik | - | RIKEN cDNA 2210420H20 gene
chr12-36 | chr12 | 110856312 | 110856514 | + | 15.3 | 0.692 | promoter-TSS (NR_029918) | promoter-TSS (NR_029918) | -55 | NR_029918 | 723854 |  | NR_029918 |  | Mir370 | Mirn370|mmu-mir-370 | microRNA 370
chr11-98 | chr11 | 69394590 | 69394792 | + | 15.3 | 0.833 | intron (NM_001127233, intron 1 of 10) | intron (NM_001127233, intron 1 of 10) | 830 | NM_001127233 | 22059 | Mm.222 | NM_001127233 | ENSMUSG00000059552 | Trp53 | Tp53|bbl|bfy|bhy|p44|p53 | transformation related protein 53
chr8-94 | chr8 | 86710504 | 86710706 | + | 15.3 | 0.639 | Intergenic | Intergenic | -7745 | NR_029821 | 723819 |  | NR_029821 |  | Mir181c | Mirn181c | microRNA 181c
chr19-4 | chr19 | 16855701 | 16855903 | + | 15.3 | 0.833 | promoter-TSS (NM_173028) | promoter-TSS (NM_173028) | -379 | NM_173028 | 271564 | Mm.211963 | NM_173028 | ENSMUSG00000046230 | Vps13a | 4930425F11|4930516E05Rik|4930543C13Rik|9930023P20|Chac|Chorein|D330038K10Rik|KIAA0986|mKIAA0986 | vacuolar protein sorting 13A (yeast)
chr12-40 | chr12 | 113846397 | 113846599 | + | 15.3 | 0.704 | [NAME] (NM_198411, intron 13 of 22) | [NAME] (NM_198411, intron 13 of 22) | -11760 | NM_007421 | 11565 | Mm.3440 | NM_007421 | [NAME] | Adssl1 | AI528595|Adss|Adss1 | adenylosuccinate synthetase like 1
[NAME] | chr14 | 63456000 | 63456202 | + | 15.3 | 0.742 | promoter-TSS (NM_175546) | promoter-TSS (NM_175546) | -426 | NM_175546 | 268752 | Mm.482243 | NM_175546 | ENSMUSG00000014547 | Wdfy2 | 5830485M08|B130024L21Rik|MGC141241|ProF|ZFYVE22 | WD repeat and FYVE domain containing 2
chr8-100 | chr8 | 124071215 | 124071417 | + | 15.3 | 0.741 | non-coding (NR_045903, exon 3 of 3) | non-coding (NR_045903, exon 3 of 3) | 3028 | NR_045903 | 72259 | Mm.396206 | NR_045903 |  | 1700030M09Rik | - | RIKEN cDNA 1700030M09 gene
chr8-98 | chr8 | 112230456 | 112230658 | + | 15.3 | 0.852 | [NAME] (NR_030773, intron 2 of 7) | [NAME] (NR_030773, intron 2 of 7) | 569 | NM_029468 | 75871 | Mm.286964 | NM_001167946 | ENSMUSG00000031728 | Zfp821 | 4930566A11Rik|Znf821 | zinc finger protein 821
chr1-42 | chr1 | 88479212 | 88479414 | + | 15.3 | 0.875 | promoter-TSS (NM_008801) | promoter-TSS (NM_008801) | -237 | NM_008801 | 18582 | Mm.12925 | NM_008801 | ENSMUSG00000026239 | Pde6d | AI841218|PrBP/delta | phosphodiesterase 6D, cGMP-specific, rod, delta
chr9-41 | chr9 | 44226178 | 44226380 | + | 15.3 | 0.808 | promoter-TSS (NM_201372) | promoter-TSS (NM_201372) | -189 | NM_201372 | 382073 | [NAME] | NM_201372 | ENSMUSG00000043923 | Ccdc84 | D630044F24Rik|Gm1114|MGC106805 | coiled-coil domain containing 84
chr6-22 | chr6 | 124779974 | 124780176 | + | 15.3 | 0.786 | promoter-TSS (NM_013700) | promoter-TSS (NM_013700) | -119 | NM_013538 | 14793 | Mm.285723 | NM_013538 | ENSMUSG00000023505 | Cdca3 | 2410005A12Rik|C8|Grcc8|Tome-1 | cell division cycle associated 3
chr11-99 | chr11 | 117219720 | 117219922 | + | 15.3 | 0.778 | intron (NM_001113488, intron 8 of 9) | intron (NM_001113488, intron 8 of 9) | 26194 | NM_001113488 | 53860 | Mm.38450 | NM_001113486 | ENSMUSG00000059248 | 2013-09-09 00:00:00 | MSF1|Msf|PNUTL4|Sint1 | septin 9
chr8-97 | chr8 | 97227297 | 97227499 | + | 15.3 | 0.786 | Intergenic | Intergenic | -7256 | NM_026385 | 67801 | Mm.279977 | NM_026385 | ENSMUSG00000031775 | [NAME] | 0610010I06Rik|AV001002|Plapi|Tm4sf11 | [NAME]
chr7-5 | chr7 | 4704631 | 4704833 | + | 15.3 | 0.714 | promoter-TSS (NM_183406) | promoter-TSS (NM_183406) | -36 | NM_183405 | 333182 | Mm.29625 | NM_183405 | ENSMUSG00000051811 | Cox6b2 | 1700067P11Rik|BC048670|COXVIB2|MGC130249|MGC130250 | cytochrome c oxidase subunit VIb polypeptide 2
chr3-6 | chr3 | 104667611 | 104667813 | + | 15.3 | 0.7 | promoter-TSS (NM_009797) | promoter-TSS (NM_009797) | 288 | NM_153091 | 229681 | Mm.316833 | NM_001253702 | ENSMUSG00000045576 | St7l | MGC130399|St7r | suppression of tumorigenicity 7-like
chr12-31 | chr12 | 20276905 | 20277107 | + | 15.3 | 0.692 | Intergenic | Intergenic | 544634 | NR_015521 | 69513 | Mm.273972 | NR_015521 |  | 1700030C10Rik | KIAA0400 | RIKEN cDNA 1700030C10 gene
chr6-21 | chr6 | 122714606 | 122714808 | + | 15.3 | 0.778 | Intergenic | CpG | -21944 | NM_011401 | 20527 | Mm.395108 | NM_011401 | ENSMUSG00000003153 | Slc2a3 | AA408729|AL023014|AL024341|AU040424|C78366|Glut-3|Glut3 | solute carrier family 2 (facilitated glucose transporter), member 3
chr6-20 | chr6 | 115945706 | 115945908 | + | 15.3 | 0.759 | promoter-TSS (NM_026376) | promoter-TSS (NM_026376) | -784 | NM_026376 | 67784 | Mm.3085 | NM_026376 | ENSMUSG00000030123 | Plxnd1 | 6230425C21Rik | plexin D1
chr17-23 | chr17 | 27521252 | 27521454 | + | 15.3 | 0.741 | Intergenic | Intergenic | 118896 | NM_001013385 | 268934 | Mm.358940 | NM_001013385 | ENSMUSG00000063239 | Grm4 | [NAME] | glutamate receptor, metabotropic 4
chr12-34 | chr12 | 106974168 | 106974370 | + | 15.3 | 0.815 | [NAME] (NM_030187, intron 7 of 17) | [NAME] (NM_030187, intron 7 of 17) | 30077 | NM_030187 | 78801 | Mm.36006 | NM_030187 | ENSMUSG00000041323 | Ak7 | 4930502N02Rik | adenylate kinase 7
chr12-42 | chr12 | 115011602 | 115011804 | + | 15.3 | 0.793 | Intergenic | RMER17A2|LTR|ERVK | 229584 | [NAME] | 238406 | Mm.188683 | [NAME] | ENSMUSG00000043945 | Adam6a | Adam6|tMDCIV | a disintegrin and metallopeptidase domain 6A
chr8-96 | chr8 | 89427361 | 89427563 | + | 15.3 | 0.516 | Intergenic | Intergenic | -18305 | NM_030563 | 80750 | Mm.428374 | NM_030563 | ENSMUSG00000031652 | N4bp1 | AI481586|C81621|MGC7607 | NEDD4 binding protein 1
chr7-6 | chr7 | 6680924 | 6681126 | + | 15.3 | 0.594 | [NAME] (NM_008817, intron 1 of 8) | [NAME] (NM_008817, intron 1 of 8) | 2105 | NM_008817 | 18616 | Mm.389800 | NM_008817 | ENSMUSG00000002265 | [NAME] | AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287 | paternally expressed 3
chr1-38 | chr1 | 51535447 | 51535649 | + | 15.3 | 0.913 | promoter-TSS (NM_028696) | promoter-TSS (NM_028696) | -305 | NM_028696 | 109019 | Mm.196290 | NM_028696 | ENSMUSG00000026107 | Obfc2a | 4930434H03Rik|4930442A21Rik|4930488J04Rik|4933440J18Rik|5830411E10Rik|AI852561|Nabp1|Nbp1 | oligonucleotide/oligosaccharide-binding fold containing 2A
chr1-45 | chr1 | 130140488 | 130140690 | + | 15.3 | 0.833 | promoter-TSS (NM_026390) | promoter-TSS (NM_026390) | -169 | NM_026390 | 67812 | Mm.293321 | NM_026390 | ENSMUSG00000026353 | Ubxn4 | 1300013G12Rik|KIAA0242|Ubxd2|mKIAA0242 | UBX domain protein 4
chr5-18 | chr5 | 108863432 | 108863634 | + | 15.3 | 0.769 | promoter-TSS (NM_007507) | promoter-TSS (NM_007507) | -136 | NM_007507 | 11958 | Mm.136093 | NM_007507 | [NAME] | [NAME] | 2610008D24Rik|Atp5i|Lfm1|MGC107302 | ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit e
chr17-22 | chr17 | 27430254 | 27430456 | + | 15.3 | 0.72 | Intergenic | Intergenic | -88972 | NM_146075 | 224640 | Mm.29689 | NM_146075 | ENSMUSG00000044857 | [NAME] | BC026588|Lem2|MGC37253|NET25 | LEM domain containing 2
chr8-102 | chr8 | 126243347 | 126243549 | + | 15.3 | 0.759 | Intergenic | Intergenic | -14410 | NR_040702 | 234863 | Mm.246601 | NR_040702 |  | 6030466F02Rik | - | RIKEN cDNA 6030466F02 gene
chr6-24 | chr6 | 127630738 | 127630940 | + | 15.3 | 0.731 | Intergenic | Intergenic | 88338 | NM_201371 | 381813 | Mm.39750 | NM_201371 | ENSMUSG00000030350 | Prmt8 | Hrmt1l3|Hrmt1l4 | protein arginine N-methyltransferase 8
chr8-101 | chr8 | 125091200 | 125091402 | + | 15.3 | 0.543 | promoter-TSS (NM_026014) | promoter-TSS (NM_026014) | -614 | NM_026014 | 67177 | Mm.21873 | NM_026014 | ENSMUSG00000006585 | Cdt1 | 2610318F11Rik|AW545653|C76791|Ris2 | chromatin licensing and DNA replication factor 1
chr15-5 | chr15 | 9000675 | 9000877 | + | 14.6 | 0.692 | promoter-TSS (NM_001085410) | promoter-TSS (NM_001085410) | -233 | NM_001085410 | 68646 | Mm.468219 | [NAME] | ENSMUSG00000022253 | [NAME] | 1110020G09Rik|4933430B08Rik | NAD kinase domain containing 1
chr8-127 | chr8 | 126759594 | 126759796 | + | 14.6 | 0.75 | [NAME] (NM_139272, intron 1 of 15) | [NAME] (NM_139272, intron 1 of 15) | 4401 | NM_139272 | 108148 | Mm.33808 | NM_139272 | ENSMUSG00000089704 | Galnt2 | AI480629 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
chr8-119 | chr8 | 113153686 | 113153888 | + | 14.6 | 0.72 | [NAME] (NM_146216, intron 1 of 18) | [NAME] (NM_146216, intron 1 of 18) | 11249 | NM_146216 | 234729 | Mm.471242 | NM_146216 | ENSMUSG00000010936 | Vac14 | [NAME] | Vac14 homolog (S. cerevisiae)
chr12-43 | chr12 | 20234203 | 20234405 | + | 14.6 | 0.679 | Intergenic | MMERGLN-int|LTR|ERV1 | 587336 | NR_015521 | 69513 | Mm.273972 | NR_015521 |  | 1700030C10Rik | KIAA0400 | RIKEN cDNA 1700030C10 gene
chr12-50 | chr12 | 88246970 | 88247172 | + | 14.6 | 0.68 | Intergenic | Intergenic | -21307 | NM_145836 | 238330 | Mm.248358 | NM_145836 | ENSMUSG00000034168 | 6430527G18Rik | Eap1|Irf2bpl | RIKEN cDNA 6430527G18 gene
chr12-54 | chr12 | 109507618 | 109507820 | + | 14.6 | 0.667 | intron (NM_001159910, intron 1 of 5) | intron (NM_001159910, intron 1 of 5) | 5908 | NM_001159910 | 668158 | Mm.482792 | NM_001159910 | ENSMUSG00000084883 | [NAME] | EG668158|Gm265|Gm9010 | coiled-coil domain containing 85C
chr5-19 | chr5 | 104475441 | 104475643 | + | 14.6 | 0.833 | promoter-TSS (NM_028794) | promoter-TSS (NM_028794) | -488 | NM_028794 | 74167 | Mm.241484 | NM_028794 | ENSMUSG00000029310 | Nudt9 | 1190002C07Rik|AI462474 | nudix (nucleoside diphosphate linked moiety X)-type motif 9
chr8-114 | chr8 | 87189232 | 87189434 | + | 14.6 | 0.552 | Intergenic | Intergenic | -2582 | NM_010499 | 15936 | Mm.399 | NM_010499 | ENSMUSG00000053560 | Ier2 | AI317238|Ch1|Pip92 | immediate early response 2
chr8-113 | chr8 | 87025505 | 87025707 | + | 14.6 | 0.655 | [NAME] (NM_007578, intron 3 of 46) | [NAME] (NM_007578, intron 3 of 46) | 86343 | NM_001252061 | 12286 | Mm.334658 | NM_001252059 | ENSMUSG00000034656 | Cacna1a | APCA|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|leaner|nmf352|rkr|rocker|tg|tottering | calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
chr6-31 | chr6 | 125381775 | 125381977 | + | 14.6 | 0.808 | Intergenic | Lx8|LINE|L1 | -51354 | NM_198604 | 213522 | Mm.333396 | NM_198604 | ENSMUSG00000038167 | Plekhg6 | BC026778|Gm155|MGC30363 | pleckstrin homology domain containing, family G (with RhoGef domain) member 6
chr8-123 | chr8 | 123738897 | 123739099 | + | 14.6 | 0.7 | Intergenic | B3A|SINE|B2 | 87413 | NM_008024 | 14241 | Mm.5111 | NM_008024 |  | Foxl1 | FREAC7|Fkh6|fkh-6 | forkhead box L1
chr10-9 | chr10 | 20671923 | 20672125 | + | 14.6 | 0.72 | promoter-TSS (NM_026203) | promoter-TSS (NM_026203) | -329 | NM_026203 | 52906 | Mm.486431 | NM_001177776 | ENSMUSG00000019986 | Ahi1 | 1700015F03Rik|Ahi-1|D10Bwg0629e | [NAME] helper integration site 1
chr19-5 | chr19 | 8860422 | 8860624 | + | 14.6 | 0.783 | [NAME], intron 1 of 11) | [NAME], intron 1 of 11) | 283 | NM_146092 | 225895 | Mm.489793 | NM_001177798 | ENSMUSG00000003680 | Taf6l | 2810417N14Rik|BB223262|C530024J06Rik|MGC41377|Paf65a | TAF6-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
chr19-6 | chr19 | 23207677 | 23207879 | + | 14.6 | 0.864 | Intergenic | Intergenic | -7938 | NM_010638 | 16601 | Mm.392684 | NM_010638 | ENSMUSG00000033863 | Klf9 | 2310051E17Rik|AA589643|BTEB-1|Bteb1|ENSMUSG00000055440|Gm9971 | Kruppel-like factor 9
chr3-7 | chr3 | 87714559 | 87714761 | + | 14.6 | 0.731 | [NAME] (NM_008231, intron 1 of 5) | [NAME] (NM_008231, intron 1 of 5) | 4417 | NM_008231 | 15191 | Mm.292208 | NM_008231 | ENSMUSG00000004897 | Hdgf | AI118077|D3Ertd299e | hepatoma-derived growth factor
[NAME] | chr11 | 115794770 | 115794972 | + | 14.6 | 0.643 | promoter-TSS (NM_130454) | promoter-TSS (NM_130454) | -65 | NM_130454 | 170472 | Mm.379351 | NM_130454 | ENSMUSG00000020752 | Recql5 | Recq5b|Recql5b | [NAME] protein-like 5
chr8-110 | chr8 | 83263773 | 83263975 | + | 14.6 | 0.783 | promoter-TSS (NM_053124) | promoter-TSS (NM_053124) | -516 | NM_053124 | 93762 | Mm.474173 | NM_053124 | ENSMUSG00000031715 | Smarca5 | 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
chr8-126 | chr8 | 126331006 | 126331208 | + | 14.6 | 0.72 | [NAME] (NM_009003, intron 1 of 7) | [NAME] (NM_009003, intron 1 of 7) | 1211 | NM_009003 | 19341 | Mm.9221 | NM_009003 | ENSMUSG00000019478 | Rab4a | AI848268|Rab4 | RAB4A, member RAS oncogene family
chr6-26 | chr6 | 113888906 | 113889108 | + | 14.6 | 0.864 | [NAME] (NM_009723, intron 2 of 21) | MTE2b|LTR|MaLR | -47637 | NM_001036684 | 11941 | Mm.443564 | NM_001036684 | ENSMUSG00000030302 | Atp2b2 | D6Abb2e|PMCA2|Tmy|dfw|jog|wms|wri | ATPase, Ca++ transporting, plasma membrane 2
chr12-47 | chr12 | 87086831 | 87087033 | + | 14.6 | 0.704 | promoter-TSS (NM_145447) | promoter-TSS (NM_145447) | -557 | NM_145447 | 217721 | Mm.301076 | NM_145447 | ENSMUSG00000034258 | Mfsd7c | CCT|Flvcr2|MGC19050 | major facilitator superfamily domain containing 7C
chr11-104 | chr11 | 116626106 | 116626308 | + | 14.6 | 0.792 | TTS (NM_011371) | TTS (NM_011371) | 10614 | NM_011371 | 20445 | [NAME] | NM_011371 | ENSMUSG00000009588 | St6galnac1 | Siat7a | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1
chr12-53 | chr12 | 107649823 | 107650025 | + | 14.6 | 0.84 | Intergenic | Intergenic | 35952 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr13-17 | chr13 | 55431929 | 55432131 | + | 14.6 | 0.643 | promoter-TSS (NM_016662) | promoter-TSS (NM_016662) | -939 | NM_016662 | 17121 | [NAME] | NM_016662 | ENSMUSG00000021485 | Mxd3 | 4631412E13Rik|Mad3|bHLHc13 | [NAME] dimerization protein 3
chr8-118 | chr8 | 112217185 | 112217387 | + | 14.6 | 0.857 | promoter-TSS (NM_028018) | promoter-TSS (NM_028018) | -92 | NM_028018 | 71955 | Mm.290036 | NM_028018 | ENSMUSG00000031729 | 2400003C14Rik | AW536298|Ist1|mKIAA0174 | RIKEN cDNA 2400003C14 gene
chr12-46 | chr12 | 87070347 | 87070549 | + | 14.6 | 0.622 | Intergenic | Intergenic | -17041 | NM_145447 | 217721 | Mm.301076 | NM_145447 | ENSMUSG00000034258 | Mfsd7c | CCT|Flvcr2|MGC19050 | major facilitator superfamily domain containing 7C
chrX-15 | chrX | 131146975 | 131147177 | + | 14.6 | 0.778 | Intergenic | Intergenic | 11251 | NM_019868 | 56258 | Mm.315909 | NM_019868 | ENSMUSG00000045427 | Hnrnph2 | DXHXS1271E|Ftp-3|Ftp3|H'|HNRNP|Hnrph2 | heterogeneous nuclear ribonucleoprotein H2
chr4-13 | chr4 | 11083031 | 11083233 | + | 14.6 | 0.8 | promoter-TSS (NM_001199105) | promoter-TSS (NM_001199105) | -456 | NM_021897 | 60599 | Mm.393018 | NM_021897 | ENSMUSG00000028211 | Trp53inp1 | 2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap | transformation related protein 53 inducible nuclear protein 1
chr8-120 | chr8 | 119748574 | 119748776 | + | 14.6 | 0.88 | Intergenic | Intergenic | -32244 | NM_001163262 | 74440 | Mm.233181 | NM_001163262 | ENSMUSG00000034390 | 4933407C03Rik | 5830471E12Rik|AI314065|AI464126|Cmip | RIKEN cDNA 4933407C03 gene
chr8-115 | chr8 | 91279227 | 91279429 | + | 14.6 | 0.769 | Intergenic | Intergenic | 58385 | NM_001128169 | 74256 | Mm.24282 | NM_001128169 | ENSMUSG00000036712 | Cyld | 2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849 | cylindromatosis (turban tumor syndrome)
chr6-33 | chr6 | 134779706 | 134779908 | + | 14.6 | 0.778 | promoter-TSS (NM_177687) | promoter-TSS (NM_177687) | -410 | NM_177687 | 232430 | Mm.267010 | NM_177687 | ENSMUSG00000032652 | Crebl2 | AI046348|B230205M03|MGC130380|MGC130381 | cAMP responsive element binding protein-like 2
chr17-27 | chr17 | 30729219 | 30729421 | + | 14.6 | 0.87 | TTS (NM_001113560) | TTS (NM_001113560) | -16088 | NM_027060 | 224671 | Mm.41220 | NM_027060 | ENSMUSG00000062202 | Btbd9 | 1700023F20Rik|4930402L05|AI464421 | BTB (POZ) domain containing 9
chr9-42 | chr9 | 25179485 | 25179687 | + | 14.6 | 0.81 | Intergenic | L1_Mur3|LINE|L1 | -109596 | NM_026189 | 67484 | Mm.112977 | NM_026189 | ENSMUSG00000036611 | Eepd1 | 2310005P05Rik|AI481005 | endonuclease/exonuclease/phosphatase family domain containing 1
chr13-18 | chr13 | 64533658 | 64533860 | + | 14.6 | 0.692 | promoter-TSS (NM_053180) | promoter-TSS (NM_053180) | -102 | NM_053180 | 105278 | Mm.74982 | NM_053180 | ENSMUSG00000021483 | Cdk20 | 4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|MGC38901|PNQLARE|p42 | cyclin-dependent kinase 20
chr8-109 | chr8 | 72071399 | 72071601 | + | 14.6 | 0.81 | Intergenic | Intergenic | 77574 | NM_001045553 | 234362 | Mm.458487 | NM_001045553 | ENSMUSG00000060427 | Zfp868 | AI449175|AW108241|C530032E20|mszf62 | zinc finger protein 868
chr8-111 | chr8 | 86264577 | 86264779 | + | 14.6 | 0.75 | intron (NM_001163029, intron 1 of 17) | B3|SINE|B2 | 532 | NM_001163029 | 26364 | Mm.334648 | NM_001163029 | ENSMUSG00000002885 | Cd97 | AA409984|TM7LN1 | CD97 antigen
chr8-103 | chr8 | 19725020 | 19725222 | + | 14.6 | 0.76 | Intergenic | Intergenic | -4455 | NM_001039553 | 626415 | Mm.425517 | NM_001039553 | ENSMUSG00000074456 | 4930467E23Rik | ENSMUSG00000074453|OTTMUSG00000018948|TSAP | RIKEN cDNA 4930467E23 gene
chr7-8 | chr7 | 105963879 | 105964081 | + | 14.6 | 0.76 | Intergenic | tRNA-Pro-CCA|tRNA|tRNA | -23375 | NM_009519 | 22411 | Mm.22182 | NM_009519 | ENSMUSG00000015957 | Wnt11 | - | wingless-related MMTV integration site 11
chr13-19 | chr13 | 95985885 | 95986087 | + | 14.6 | 0.629 | [NAME] (NM_001170669, intron 1 of 18) | [NAME] (NM_001170669, intron 1 of 18) | 7019 | NM_001170669 | 218461 | Mm.100167 | NM_001170669 | ENSMUSG00000021684 | Pde8b | B230331L10Rik|C030047E14Rik | phosphodiesterase 8B
chr8-121 | chr8 | 119784321 | 119784523 | + | 14.6 | 0.679 | [NAME] (NM_001163262, intron 1 of 20) | [NAME] (NM_001163262, intron 1 of 20) | 3503 | NM_001163262 | 74440 | Mm.233181 | NM_001163262 | ENSMUSG00000034390 | 4933407C03Rik | 5830471E12Rik|AI314065|AI464126|Cmip | RIKEN cDNA 4933407C03 gene
chr12-57 | chr12 | 112229904 | 112230106 | + | 14.6 | 0.6 | Intergenic | Intergenic | -2603 | NR_036598 | 77878 | Mm.293198 | NR_036598 |  | 6030440G07Rik | - | RIKEN cDNA 6030440G07 gene
chr8-108 | chr8 | 20026453 | 20026655 | + | 14.6 | 0.6 | Intergenic | ORR1E|LTR|MaLR | -6162 | NR_028428 | 381598 | Mm.483074 | NM_001024708 |  | 2610005L07Rik | 2810038F24Rik|6720476A01Rik | cadherin 11 pseudogene
chr12-52 | chr12 | 106534679 | 106534881 | + | 14.6 | 0.667 | Intergenic | Intergenic | -40024 | NR_045047 | 69952 | Mm.158311 | NR_045047 |  | 2810011L19Rik | - | RIKEN cDNA 2810011L19 gene
chr8-112 | chr8 | 86760993 | 86761195 | + | 14.6 | 0.692 | promoter-TSS (NM_172503) | promoter-TSS (NM_172503) | -153 | NM_172503 | 212168 | Mm.117094 | NM_172503 | ENSMUSG00000035671 | Zswim4 | D330002I24|E130119J17Rik | zinc finger, SWIM domain containing 4
chr6-28 | chr6 | 116157928 | 116158130 | + | 14.6 | 0.84 | promoter-TSS (NM_026585) | promoter-TSS (NM_026585) | -22 | NM_026585 | 28006 | Mm.28524 | NM_026585 | ENSMUSG00000024104 | D6Wsu116e | A130095H06|C530005J20Rik|Fam21 | DNA segment, Chr 6, Wayne State University 116, expressed
chr4-16 | chr4 | 131441570 | 131441772 | + | 14.6 | 0.76 | [NAME] (NM_020587, intron 1 of 5) | [NAME] (NM_020587, intron 1 of 5) | 12117 | NM_020587 | 57317 | Mm.2478 | NM_020587 | ENSMUSG00000028911 | Srsf4 | 5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4 | serine/arginine-rich splicing factor 4
chr11-102 | chr11 | 115885837 | 115886039 | + | 14.6 | 0.783 | promoter-TSS (NM_008211) | promoter-TSS (NM_008211) | -120 | NM_008211 | 15081 | Mm.371563 | NM_008211 | ENSMUSG00000016559 | H3f3b | 9430068D06Rik|H3.3B|H3f3a | H3 histone, family 3B
chr7-9 | chr7 | 134160605 | 134160807 | + | 14.6 | 0.677 | TTS (NM_001102563) | TTS (NM_001102563) | 160 | NM_030240 | 67278 | Mm.345385 | NM_030240 | ENSMUSG00000030680 | 2900092E17Rik | C77040|PA1 | RIKEN cDNA 2900092E17 gene
chr8-116 | chr8 | 97604489 | 97604691 | + | 14.6 | 0.5 | promoter-TSS (NM_028805) | promoter-TSS (NM_028805) | -511 | NM_028805 | 74187 | Mm.28382 | NM_028805 | ENSMUSG00000031787 | Katnb1 | 2410003J24Rik|KAT | [NAME] (WD40-containing) subunit B 1
chr17-26 | chr17 | 29588309 | 29588511 | + | 14.6 | 0.72 | Intergenic | Intergenic | -39580 | NM_008842 | 18712 | Mm.485038 | NM_008842 | ENSMUSG00000024014 | Pim1 | Pim-1 | proviral integration site 1
chr8-124 | chr8 | 124967675 | 124967877 | + | 14.6 | 0.68 | promoter-TSS (NM_138656) | promoter-TSS (NM_138656) | 220 | NR_045696 | 100689703 | Mm.471548 | NR_045696 |  | 9330133O14Rik | - | RIKEN cDNA 9330133O14 gene
chr12-62 | chr12 | 114239266 | 114239468 | + | 14.6 | 0.677 | promoter-TSS (NM_028193) | promoter-TSS (NM_028193) | -535 | NM_028193 | 72308 | Mm.196721 | NM_028193 | ENSMUSG00000011158 | Brf1 | 2510002F24Rik|GTF3B|TAF3C|TAFIII90|TFIIIB90|mTFIIIB90 | [NAME] homolog, subunit of RNA polymerase III transcription initiation factor IIIB (S. cerevisiae)
chr17-29 | chr17 | 35049213 | 35049415 | + | 14.6 | 0.724 | intron (NM_145830, intron 24 of 26) | intron (NM_145830, intron 24 of 26) | -2097 | NM_023557 | 70129 | Mm.183126 | NM_023557 | ENSMUSG00000007034 | Slc44a4 | 2210409B01Rik|NG22 | solute carrier family 44, member 4
chr8-117 | chr8 | 107813000 | 107813202 | + | 14.6 | 0.643 | TTS (NM_177788) | TTS (NM_177788) | 327 | NM_001166394 | 74356 | Mm.487679 | NM_001166394 | ENSMUSG00000014837 | 4931428F04Rik | AI426165|Kiaa0895l | RIKEN cDNA 4931428F04 gene
chr4-15 | chr4 | 122878166 | 122878368 | + | 14.6 | 0.741 | promoter-TSS (NM_001085502) | promoter-TSS (NM_001085502) | -529 | NM_001085502 | 230718 | Mm.354635 | NM_001085502 | ENSMUSG00000054958 | Nt5c1a | Cn1a|Gm49 | 5'-nucleotidase, cytosolic IA
chr3-8 | chr3 | 95622947 | 95623149 | + | 14.6 | 0.955 | promoter-TSS (NM_001081293) | promoter-TSS (NM_001081293) | -172 | NM_001081293 | 75137 | [NAME] | NM_001081293 | ENSMUSG00000028106 | Rprd2 | 2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460 | regulation of nuclear pre-mRNA domain containing 2
chr12-51 | chr12 | 103481208 | 103481410 | + | 14.6 | 0.826 | [NAME], intron 12 of 16) | [NAME], intron 12 of 16) | -39975 | NM_177620 | 217835 | Mm.24145 | NM_001161365 | ENSMUSG00000044456 | Rin3 | 6430500K07|C86933 | [NAME] and Rab interactor 3
chr16-10 | chr16 | 57231508 | 57231710 | + | 14.6 | 0.87 | promoter-TSS (NM_026254) | promoter-TSS (NM_026254) | -30 | NM_026254 | 67581 | Mm.257819 | NM_026254 | ENSMUSG00000022749 | Tbc1d23 | 4930451A13Rik|AU015720|AU043671|AU043778|D030022P07Rik|W51689 | TBC1 domain family, member 23
chr15-6 | chr15 | 101814527 | 101814729 | + | 14.6 | 0.531 | Intergenic | Intergenic | 20145 | NM_031170 | 16691 | Mm.358618 | NM_031170 | ENSMUSG00000049382 | Krt8 | AA960620|AL022697|AU019895|Card2|EndoA|K8|Krt-2.8|Krt2-8|MGC118110 | keratin 8
chr10-10 | chr10 | 79866157 | 79866359 | + | 14.6 | 0.8 | [NAME] (NM_025650, intron 2 of 2) | B3A|SINE|B2 | 3308 | NM_025650 | 66594 | Mm.379119 | NM_025650 | ENSMUSG00000020163 | Uqcr11 | 0710008D09Rik|AL022707|Uqcr | ubiquinol-cytochrome c reductase, complex III subunit XI
chr11-100 | chr11 | 97663141 | 97663343 | + | 14.6 | 0.731 | intron (NM_010688, intron 1 of 6) | intron (NM_010688, intron 1 of 6) | 2256 | NM_010688 | 16796 | Mm.271967 | NM_010688 | ENSMUSG00000038366 | Lasp1 | AA408629|Def-4|SH3P6|Tg(Col1a1-lacZ)1Ngma | LIM and SH3 protein 1
chr8-122 | chr8 | 122278603 | 122278805 | + | 14.6 | 0.826 | intron (NM_026922, intron 24 of 26) | intron (NM_026922, intron 24 of 26) | 23612 | NM_028883 | 74347 | Mm.358759 | NM_028883 | ENSMUSG00000034105 | 4632415K11Rik | Kiaa1609 | RIKEN cDNA 4632415K11 gene
chr12-45 | chr12 | 86796672 | 86796874 | + | 14.6 | 0.826 | Intergenic | Intergenic | -18078 | NM_010234 | 14281 | Mm.246513 | NM_010234 | ENSMUSG00000021250 | Fos | D12Rfj1|c-fos|cFos | FBJ osteosarcoma oncogene
chr5-20 | chr5 | 138229260 | 138229462 | + | 14.6 | 0.739 | intron (NM_001005426, intron 1 of 16) | CpG | 331 | NM_001005426 | 381678 | [NAME] | NM_001005426 | ENSMUSG00000037108 | Zcwpw1 | Gm1053|MGC76794 | zinc finger, CW type with PWWP domain 1
chr6-27 | chr6 | 115741019 | 115741221 | + | 14.6 | 0.833 | [NAME] (NM_025958, intron 8 of 14) | [NAME] (NM_025958, intron 8 of 14) | 16545 | NM_025958 | 67088 | Mm.277683 | NM_025958 | ENSMUSG00000030319 | Cand2 | 2210404G23Rik|Tp120b|mKIAA0667 | cullin-associated and neddylation-dissociated 2 (putative)
chr7-13 | chr7 | 51037903 | 51038105 | + | 13.8 | 0.75 | intron (NM_133712, intron 2 of 5) | intron (NM_133712, intron 2 of 5) | 1580 | NM_133712 | 69540 | Mm.46421 | NM_133712 | ENSMUSG00000030693 | Klk10 | 2300002A13Rik|NES1|PRSSL1 | [NAME] related-peptidase 10
chr4-25 | chr4 | 122563499 | 122563701 | + | 13.8 | 0.613 | promoter-TSS (NM_007598) | promoter-TSS (NM_007598) | -476 | NM_007598 | 12331 | [NAME] | NM_007598 | ENSMUSG00000028656 | Cap1 | - | CAP, adenylate cyclase-associated protein 1 (yeast)
chr8-135 | chr8 | 86887671 | 86887873 | + | 13.8 | 0.607 | Intergenic | Intergenic | -51491 | NM_001252060 | 12286 | Mm.334658 | NM_001252059 | ENSMUSG00000034656 | Cacna1a | APCA|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|leaner|nmf352|rkr|rocker|tg|tottering | calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
chr10-11 | chr10 | 22048940 | 22049142 | + | 13.8 | 0.818 | [NAME] (NM_009018, intron 5 of 5) | L1_Mus1|LINE|L1 | 22515 | NR_015465 | 606736 | Mm.387042 | NR_015465 |  | C920009B18Rik | - | RIKEN cDNA C920009B18 gene
chr16-11 | chr16 | 3115061 | 3115263 | + | 13.8 | 0.95 | Intergenic | (CCTG)n|Simple_repeat|Simple_repeat | -477236 | NM_146860 | 258859 | Mm.377723 | NM_146860 | ENSMUSG00000051003 | Olfr161 | MOR131-1|OR912-47M6 | olfactory receptor 161
chr14-19 | chr14 | 100143288 | 100143490 | + | 13.8 | 0.704 | Intergenic | Intergenic | 405626 | NM_010636 | 16597 | Mm.458816 | NM_010636 | ENSMUSG00000072294 | Klf12 | 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik | Kruppel-like factor 12
chr3-10 | chr3 | 88326083 | 88326285 | + | 13.8 | 0.652 | Intergenic | Intergenic | -10133 | NM_001029890 | 72640 | Mm.402169 | NM_001029890 | [NAME] | Mex3a | 2700083E18Rik|Gm411|Rkhd4 | mex3 homolog A (C. elegans)
chr12-84 | chr12 | 112616344 | 112616546 | + | 13.8 | 0.783 | promoter-TSS (NM_183016) | promoter-TSS (NM_183016) | -516 | NM_183016 | 217866 | Mm.485798 | NM_183016 | ENSMUSG00000021279 | Cdc42bpb | MRCKb | CDC42 binding protein kinase beta
chr8-142 | chr8 | 113576171 | 113576373 | + | 13.8 | 0.773 | [NAME] (NM_146217, intron 15 of 20) | [NAME] (NM_146217, intron 15 of 20) | -3967 | NM_028274 | 72544 | Mm.334810 | NM_028274 |  | Exosc6 | 2610510N21Rik|C76919|MGC151362|Mtr3 | exosome component 6
chr2-13 | chr2 | 32767878 | 32768080 | + | 13.8 | 0.68 | exon (NM_146119, exon 5 of 14) | exon (NM_146119, exon 5 of 14) | 36325 | NM_146119 | 227737 | Mm.301646 | NM_146119 | ENSMUSG00000026796 | Fam129b | 9130404D14Rik | family with sequence similarity 129, member B
chr6-37 | chr6 | 120147950 | 120148152 | + | 13.8 | 0.545 | exon (NM_016718, exon 2 of 4) | exon (NM_016718, exon 2 of 4) | 96526 | NM_198884 | 330406 | Mm.321840 | NM_198884 | ENSMUSG00000041372 | B4galnt3 | AB114826|B4GalNAcT3|C330047A21 | beta-1,4-N-acetyl-galactosaminyl transferase 3
chr7-17 | chr7 | 134004935 | 134005137 | + | 13.8 | 0.739 | promoter-TSS (NM_172746) | promoter-TSS (NM_172746) | -59 | NM_153580 | 233875 | Mm.486297 | NM_153580 | ENSMUSG00000030689 | [NAME] | AI225782|AI854876|Ccdc85|Ccdc95|MGC31515 | INO80 complex subunit E
chrX-18 | chrX | 93152315 | 93152517 | + | 13.8 | 0.909 | promoter-TSS (NM_152822) | promoter-TSS (NM_152822) | -118 | NM_152822 | 76130 | Mm.274318 | NM_152822 | ENSMUSG00000057421 | Las1l | 1810030A06Rik|5830482G23Rik | LAS1-like (S. cerevisiae)
[NAME] | chr11 | 116532670 | 116532872 | + | 13.8 | 0.679 | promoter-TSS (NR_027819) | promoter-TSS (NR_027819) | -203 | NR_027821 | 66293 | Mm.432051 | NM_025472 |  | 1810032O08Rik | - | RIKEN cDNA 1810032O08 gene
chr15-8 | chr15 | 89000105 | 89000307 | + | 13.8 | 0.792 | [NAME] (NM_138749, intron 3 of 37) | [NAME] (NM_138749, intron 3 of 37) | 4074 | NM_001159521 | 140570 | Mm.486164 | NM_001159521 | ENSMUSG00000036606 | Plxnb2 | 1110007H23Rik|Debt|mKIAA0315 | plexin B2
chr12-76 | chr12 | 108385210 | 108385412 | + | 13.8 | 0.562 | Intergenic | Intergenic | -430777 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr1-59 | chr1 | 155180426 | 155180628 | + | 13.8 | 0.75 | promoter-TSS (NM_010683) | promoter-TSS (NM_010683) | -611 | NM_010683 | 226519 | Mm.1249 | NM_010683 | ENSMUSG00000026478 | Lamc1 | Lamb2 | laminin, gamma 1
chr17-39 | chr17 | 56147675 | 56147877 | + | 13.8 | 0.586 | promoter-TSS (NM_026530) | promoter-TSS (NM_026530) | -848 | NM_026530 | 68047 | Mm.358710 | NM_026530 | ENSMUSG00000003199 | Mpnd | E130307M08Rik | MPN domain containing
chr12-63 | chr12 | 60140951 | 60141153 | + | 13.8 | 0.773 | Intergenic | Intergenic | 21396 | NM_030057 | 78232 | Mm.290070 | NM_030057 | ENSMUSG00000020993 | Trappc6b | 5830498C14Rik|C79212 | trafficking protein particle complex 6B
chr3-11 | chr3 | 89576575 | 89576777 | + | 13.8 | 0.633 | promoter-TSS (NM_027315) | promoter-TSS (NM_027315) | -855 | [NAME] | 70093 | Mm.41438 | [NAME] | ENSMUSG00000042572 | Ube2q1 | 1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q | ubiquitin-conjugating enzyme E2Q (putative) 1
chr8-132 | chr8 | 72077768 | 72077970 | + | 13.8 | 0.95 | Intergenic | Intergenic | 71205 | NM_001045553 | 234362 | Mm.458487 | NM_001045553 | ENSMUSG00000060427 | Zfp868 | AI449175|AW108241|C530032E20|mszf62 | zinc finger protein 868
chr6-40 | chr6 | 124764572 | 124764774 | + | 13.8 | 0.792 | promoter-TSS (NM_009415) | promoter-TSS (NM_009415) | -359 | NM_009415 | 21991 | Mm.439915 | NM_009415 | ENSMUSG00000023456 | Tpi1 | AI255506|Tpi|Tpi-1 | triosephosphate isomerase 1
chr4-22 | chr4 | 116996319 | 116996521 | + | 13.8 | 0.75 | intron (NM_025739, intron 2 of 14) | intron (NM_025739, intron 2 of 14) | 71826 | NM_026837 | 68777 | Mm.331805 | NM_026837 | ENSMUSG00000048772 | Tmem53 | 1110038M16Rik|1500001P22Rik|1700012A05Rik | [NAME] 53
chr6-38 | chr6 | 120444279 | 120444481 | + | 13.8 | 0.696 | promoter-TSS (NM_033567) | promoter-TSS (NM_033567) | -555 | NM_033567 | 94047 | Mm.23088 | NM_033567 |  | Cecr6 | AW048664 | cat eye syndrome chromosome region, candidate 6 homolog (human)
chr14-15 | chr14 | 98597695 | 98597897 | + | 13.8 | 0.87 | Intergenic | Intergenic | -29034 | NM_007826 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr8-141 | chr8 | 112654496 | 112654698 | + | 13.8 | 0.826 | Intergenic | Intergenic | 37509 | NM_007586 | 12308 | Mm.2755 | NM_007586 | ENSMUSG00000003657 | Calb2 | CR | calbindin 2
chr7-14 | chr7 | 51661035 | 51661237 | + | 13.8 | 0.613 | Intergenic | Intergenic | 21640 | NM_016663 | 20981 | Mm.4824 | NM_001114116 | ENSMUSG00000030731 | Syt3 | AI385753|sytIII | synaptotagmin III
chr4-29 | chr4 | 153620750 | 153620952 | + | 13.8 | 0.667 | [NAME] (NM_001162977, intron 5 of 36) | MLT1A|LTR|MaLR | 53153 | NM_001112744 | 230972 | Mm.38481 | NM_001112744 | ENSMUSG00000029032 | Arhgef16 | - | Rho guanine nucleotide exchange factor (GEF) 16
chr8-136 | chr8 | 87174374 | 87174576 | + | 13.8 | 0.531 | Intergenic | Intergenic | 12276 | NM_010499 | 15936 | Mm.399 | NM_010499 | ENSMUSG00000053560 | Ier2 | AI317238|Ch1|Pip92 | immediate early response 2
chr6-43 | chr6 | 148160570 | 148160772 | + | 13.8 | 0.667 | promoter-TSS (NR_015615) | promoter-TSS (NR_015615) | -139 | NR_015615 | 320737 | Mm.465532 | NR_015615 |  | 4732416N19Rik | - | RIKEN cDNA 4732416N19 gene
chr11-113 | chr11 | 121065416 | 121065618 | + | 13.8 | 0.679 | promoter-TSS (NM_001001333) | promoter-TSS (NM_001001333) | -230 | NM_001001333 | 238023 | Mm.275130 | NM_001001333 | ENSMUSG00000039307 | [NAME] | BC069960|MGC78289 | hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
chr7-11 | chr7 | 16870915 | 16871117 | + | 13.8 | 0.72 | [NAME] (NM_001136471, intron 1 of 13) | [NAME] (NM_001136471, intron 1 of 13) | -1008 | NM_172297 | 243846 | Mm.482401 | NM_001136471 | ENSMUSG00000041375 | Ccdc9 | 2600011L02Rik | coiled-coil domain containing 9
chr4-26 | chr4 | 131631397 | 131631599 | + | 13.8 | 0.833 | promoter-TSS (NM_001128607) | promoter-TSS (NM_001128607) | -270 | NM_001128607 | 269587 | Mm.471627 | NM_001128606 | ENSMUSG00000028906 | Epb4.1 | 4.1R|AI415518|D4Ertd442e|Elp-1|Elp1|Epb41|KIAA4056|mKIAA4056 | erythrocyte protein band 4.1
chr12-85 | chr12 | 112718039 | 112718241 | + | 13.8 | 0.64 | Intergenic | RSINE1|SINE|B4 | 5894 | NM_001033248 | 212539 | Mm.81916 | NM_001033248 | ENSMUSG00000010529 | Gm266 | - | predicted gene 266
chr14-16 | chr14 | 99118230 | 99118432 | + | 13.8 | 0.8 | Intergenic | Intergenic | 327024 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr19-7 | chr19 | 6490561 | 6490763 | + | 13.8 | 0.593 | exon (NM_001205234, exon 14 of 23) | exon (NM_001205234, exon 14 of 23) | 52408 | NM_009203 | 20521 | Mm.391146 | NM_009203 | [NAME] | Slc22a12 | AI987855|OAT4L|Rst|Slc22al2|URAT1 | solute carrier family 22 (organic anion/cation transporter), member 12
chr18-16 | chr18 | 34822870 | 34823072 | + | 13.8 | 0.783 | Intergenic | Intergenic | -11581 | NM_178347 | 52563 | Mm.196638 | NM_178347 | ENSMUSG00000024370 | Cdc23 | 6030435O18|D18Ertd243e | CDC23 (cell division cycle 23, yeast, homolog)
chr12-73 | chr12 | 88264752 | 88264954 | + | 13.8 | 0.778 | Intergenic | Intergenic | -23140 | NR_033623 | 217732 | Mm.22337 | NM_173735 | [NAME] | 2310044G17Rik | AI842544|AI853744|Kiaa1737|mKIAA1737 | RIKEN cDNA 2310044G17 gene
chr17-33 | chr17 | 24873279 | 24873481 | + | 13.8 | 0.708 | promoter-TSS (NM_013759) | promoter-TSS (NM_013759) | -207 | NM_013759 | 27361 | Mm.28212 | NM_013759 | ENSMUSG00000075705 | Sepx1 | D17Wsu82e|MsrB1|SELX|SelR|Sepr | [NAME]
chr8-145 | chr8 | 124365175 | 124365377 | + | 13.8 | 0.6 | Intergenic | Intergenic | -11807 | NM_145605 | 234825 | [NAME] | NM_145605 | ENSMUSG00000040263 | Klhdc4 | AA408426|AV352552|BC012312|G430025P05Rik|MGC19372 | kelch domain containing 4
chr11-107 | chr11 | 68936962 | 68937164 | + | 13.8 | 0.818 | TTS (NM_033041) | TTS (NM_033041) | -2816 | NM_011786 | 23801 | Mm.41989 | NM_011786 | ENSMUSG00000020892 | Aloxe3 | MGC143829|MGC143830|e-LOX-3 | arachidonate lipoxygenase 3
chr12-90 | chr12 | 113932017 | 113932219 | + | 13.8 | 0.696 | Intergenic | Intergenic | 15067 | NM_001100460 | 382639 | Mm.11350 | NM_001100460 | ENSMUSG00000037638 | Zbtb42 | EG382639|Gm5188|simiRP58 | zinc finger and BTB domain containing 42
chr8-140 | chr8 | 106920038 | 106920240 | + | 13.8 | 0.913 | promoter-TSS (NM_153582) | promoter-TSS (NM_153582) | -432 | NM_153582 | 97487 | Mm.29658 | NM_153582 | ENSMUSG00000051578 | Cmtm4 | Cklfsf4|D19397|ENSMUSG00000051554|Gm9853|MGC30490|MGC32180 | CKLF-like MARVEL transmembrane domain containing 4
chr12-74 | chr12 | 94570278 | 94570480 | + | 13.8 | 0.704 | Intergenic | Lx2|LINE|L1 | -1482782 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr6-35 | chr6 | 39350424 | 39350626 | + | 13.8 | 0.88 | intron (NM_018810, intron 5 of 7) | intron (NM_018810, intron 5 of 7) | 19098 | NM_011226 | 19331 | Mm.123866 | NM_011226 | ENSMUSG00000029923 | Rab19 | - | RAB19, member RAS oncogene family
chr12-82 | chr12 | 111837752 | 111837954 | + | 13.8 | 0.654 | Intergenic | Intergenic | -1752 | NM_030238 | 13424 | Mm.181430 | NM_030238 | ENSMUSG00000018707 | Dync1h1 | 9930018I23Rik|AI894280|DHC1|DHC1a|DNCL|Dnchc1|Dnec1|Dnecl|Loa|MAP1C|P22|Swl|mKIAA0325 | [NAME] 1 heavy chain 1
chr1-52 | chr1 | 9738496 | 9738698 | + | 13.8 | 0.864 | promoter-TSS (NM_173443) | promoter-TSS (NM_173443) | -134 | NM_173443 | 70675 | Mm.440951 | NM_173443 | ENSMUSG00000045210 | Vcpip1 | 4932442A08|5730421J18Rik|5730538E15Rik|VCIP135|mKIAA1850 | valosin containing protein (p97)/p47 complex interacting protein 1
chr17-31 | chr17 | 7726697 | 7726899 | + | 13.8 | 0.621 | Intergenic | Intergenic | -137144 | NM_001142539 | 667055 | Mm.327371 | NM_001142539 | ENSMUSG00000056133 | Gm9992 | ENSMUSG00000056133|MGC182933 | predicted gene 9992
chr18-17 | chr18 | 35181607 | 35181809 | + | 13.8 | 0.576 | Intergenic | Intergenic | -67703 | NM_010481 | 15526 | Mm.209419 | NM_010481 | ENSMUSG00000024359 | Hspa9 | 74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74 | heat shock protein 9
chr4-19 | chr4 | 104896291 | 104896493 | + | 13.8 | 0.615 | [NAME], intron 5 of 5) | [NAME], intron 5 of 5) | 66440 | NM_080555 | 67916 | Mm.348326 | NM_080555 | ENSMUSG00000028517 | Ppap2b | 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b | phosphatidic acid phosphatase type 2B
chr15-7 | chr15 | 55099759 | 55099961 | + | 13.8 | 0.81 | Intergenic | Intergenic | -39445 | NM_181277 | 12818 | Mm.297859 | NM_181277 | ENSMUSG00000022371 | Col14a1 | 5730412L22Rik|AW108078 | collagen, type XIV, alpha 1
chr8-133 | chr8 | 72939544 | 72939746 | + | 13.8 | 0.6 | intron (NM_001004062, intron 1 of 13) | B3A|SINE|B2 | 23827 | NM_001004062 | 382056 | Mm.227767 | NM_001004062 | ENSMUSG00000003575 | Crtc1 | AI413414|MGC90786|Mect1|R74955|TORC1|mKIAA0616 | CREB regulated transcription coactivator 1
chr13-20 | chr13 | 24853116 | 24853318 | + | 13.8 | 0.727 | [NAME] (NM_020567, intron 1 of 6) | [NAME] (NM_020567, intron 1 of 6) | 589 | NM_020567 | 57441 | Mm.12239 | NM_020567 | ENSMUSG00000006715 | Gmnn | AW546347|Gem | geminin
chr4-23 | chr4 | 117564687 | 117564889 | + | 13.8 | 0.654 | promoter-TSS (NM_026344) | promoter-TSS (NM_026344) | -180 | NM_026344 | 67728 | Mm.396654 | NM_026344 | ENSMUSG00000028540 | Dph2 | 9130020C19Rik|AI467389|Dph2l2 | DPH2 homolog (S. cerevisiae)
chr7-10 | chr7 | 6315098 | 6315300 | + | 13.8 | 0.76 | promoter-TSS (NM_001025163) | promoter-TSS (NM_001025163) | -816 | NM_001025163 | 330463 | Mm.136456 | NM_001025163 | ENSMUSG00000055150 | Zfp78 | A330079D15|KRAB12|MGC102644|Zfp77 | zinc finger protein 78
chr16-13 | chr16 | 11144257 | 11144459 | + | 13.8 | 0.818 | [NAME] intron 19 of 22) | LSU-rRNA_Hsa|rRNA|rRNA | -9733 | NM_029582 | 106200 | Mm.291015 | NM_029582 | ENSMUSG00000022498 | Txndc11 | 2810408E11Rik|AI427833|EFP1|Txdc11 | thioredoxin domain containing 11
chr17-41 | chr17 | 71221863 | 71222065 | + | 13.8 | 0.76 | Intergenic | Intergenic | -3185 | NR_046463
chr14-17 | chr14 | 99619228 | 99619430 | + | 13.8 | 0.833 | intron (NM_029320, intron 15 of 17) | intron (NM_029320, intron 15 of 17) | -78581 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr17-37 | chr17 | 35575760 | 35575962 | + | 13.8 | 0.773 | promoter-TSS (NM_001198560) | promoter-TSS (NM_001198560) | -239 | NM_010394 | 15018 | Mm.431282 | NM_001198560 |  | H2-Q7 | H-2Q7|Ped|Q9|Qa-2|Qa-7|Qa7 | histocompatibility 2, Q region locus 7
chr12-70 | chr12 | 88056299 | 88056501 | + | 13.8 | 0.778 | intron (NM_144524, intron 7 of 9) | intron (NM_144524, intron 7 of 9) | 11010 | NM_144524 | 68737 | Mm.63979 | NM_144524 | ENSMUSG00000021257 | Angel1 | 1110030H02Rik|KIAA0759|mKIAA0759 | [NAME] homolog 1 (Drosophila)
chr12-86 | chr12 | 112906641 | 112906843 | + | 13.8 | 0.76 | TTS (NM_021273) | TTS (NM_021273) | 3807 | NM_021273 | 12709 | Mm.16831 | NM_021273 | ENSMUSG00000001270 | Ckb | B-CK|Bck|Ck-3|Ck3|Ckbb | [NAME], brain
chr17-40 | chr17 | 69626733 | 69626935 | + | 13.8 | 0.682 | promoter-TSS (NR_045428) | promoter-TSS (NR_045428) | -288 | NR_045428 | 69750 | Mm.439063 | NR_045428 |  | 2410021H03Rik | - | RIKEN cDNA 2410021H03 gene
chr13-21 | chr13 | 74075405 | 74075607 | + | 13.8 | 0.833 | promoter-TSS (NM_027182) | promoter-TSS (NM_027182) | 220 | NM_001024508 | 105246 | Mm.278509 | NM_001024508 | ENSMUSG00000057649 | Brd9 | AL022779 | bromodomain containing 9
chr8-144 | chr8 | 123565703 | 123565905 | + | 13.8 | 0.783 | Intergenic | Intergenic | 41128 | NR_045471 | 68790 | Mm.246916 | NR_045471 |  | 1110050K14Rik | - | RIKEN cDNA 1110050K14 gene
chr8-137 | chr8 | 87210461 | 87210663 | + | 13.8 | 0.6 | intron (NM_025788, intron 1 of 5) | intron (NM_025788, intron 1 of 5) | 1199 | NM_025788 | 66830 | Mm.289698 | NM_025788 | ENSMUSG00000001910 | Nacc1 | 2010001H03Rik|4930511N13Rik|Btbd14b|Nac1 | nucleus accumbens associated 1, [NAME] and BTB (POZ) domain containing
chr17-34 | chr17 | 25066502 | 25066704 | + | 13.8 | 0.9 | [NAME] (NM_001163451, intron 1 of 31) | [NAME] (NM_001163451, intron 1 of 31) | 7319 | NM_001163448 | 30957 | Mm.43081 | NM_001163447 | ENSMUSG00000024163 | Mapk8ip3 | BB120594|D17Wsu15e|JIP-3|JSAP1|JSAP1a|JSAP1b|JSAP1c|JSAP1d|Jip3|Syd2|mKIAA1066 | mitogen-activated protein kinase 8 interacting protein 3
chr4-27 | chr4 | 146778749 | 146778951 | + | 13.8 | 0.643 | intron (NM_001039209, intron 1 of 2) | RMER1B|Other|Other | -148536 | NM_001014397 | 433804 | Mm.332047 | NM_001014397 | [NAME] | Gm13154 | OTTMUSG00000010673 | predicted gene 13154
chr10-13 | chr10 | 80928096 | 80928298 | + | 13.8 | 0.741 | [NAME] (NM_176954, intron 9 of 11) | (CCCCAG)n|Simple_repeat|Simple_repeat | 17257 | [NAME] | 319586 | Mm.409070 | [NAME] | ENSMUSG00000034818 | Celf5 | 4930565A21Rik|Brunol5 | CUGBP, [NAME]-like family member 5
chr6-42 | chr6 | 143909330 | 143909532 | + | 13.8 | 0.692 | exon (NM_001113559, exon 7 of 14) | exon (NM_001113559, exon 7 of 14) | 248657 | NM_001113559 | 20678 | [NAME] | NM_001113559 | ENSMUSG00000041540 | Sox5 | A730017D01Rik|AI528773|MGC124352 | SRY-box containing gene 5
chr12-64 | chr12 | 86837935 | 86838137 | + | 13.8 | 0.783 | Intergenic | Intergenic | 23185 | NM_010234 | 14281 | Mm.246513 | NM_010234 | ENSMUSG00000021250 | Fos | D12Rfj1|c-fos|cFos | FBJ osteosarcoma oncogene
chr17-32 | chr17 | 15841386 | 15841588 | + | 13.8 | 0.714 | promoter-TSS (NM_007690) | promoter-TSS (NM_007690) | -444 | NM_007690 | 12648 | Mm.8137 | NM_007690 | ENSMUSG00000023852 | Chd1 | 4930525N21Rik|AI851787|AW555109|MGC141554 | chromodomain helicase DNA binding protein 1
chr7-16 | chr7 | 88299990 | 88300192 | + | 13.8 | 0.8 | [NAME] (NM_001004184, intron 11 of 17) | [NAME] (NM_001004184, intron 11 of 17) | 40406 | NM_001004184 | 434203 | Mm.389909 | NM_001004184 | ENSMUSG00000025726 | Slc28a1 | Cnt1|MGC74379 | solute carrier family 28 (sodium-coupled nucleoside transporter), member 1
chr12-72 | chr12 | 88220286 | 88220488 | + | 13.8 | 0.905 | Intergenic | Intergenic | 5377 | NM_145836 | 238330 | Mm.248358 | NM_145836 | ENSMUSG00000034168 | 6430527G18Rik | Eap1|Irf2bpl | RIKEN cDNA 6430527G18 gene
chr5-21 | chr5 | 23987551 | 23987753 | + | 13.8 | 0.833 | [NAME] (NM_139153, intron 8 of 17) | [NAME] (NM_139153, intron 8 of 17) | 29657 | NM_001256431 | 213990 | Mm.250703 | NM_001256431 | ENSMUSG00000023353 | Agap3 | AGAP-3|AV028425|Centg3|Crag|Crag.|MGC37541|MRIP-1|cnt-g3 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
chr12-79 | chr12 | 110342687 | 110342889 | + | 13.8 | 0.739 | Intergenic | Lx8|LINE|L1 | -36361 | NM_001163175 | 380785 | Mm.342085 | NM_001163175 | ENSMUSG00000040867 | Begain | BM948371|Gm897 | brain-enriched guanylate kinase-associated
chr9-43 | chr9 | 31088091 | 31088293 | + | 13.8 | 0.783 | Intergenic | CpG | 9206 | NM_001101597 | 638580 | Mm.373655 | NM_001101597 |  | Gm7244 | EG638580 | predicted gene 7244
chr17-36 | chr17 | 34740570 | 34740772 | + | 13.8 | 0.84 | promoter-TSS (NM_019403) | promoter-TSS (NM_019403) | -165 | NM_019403 | 54197 | Mm.274542 | NM_019403 | ENSMUSG00000015478 | Rnf5 | 2410131O05Rik|AA407576|NG2 | ring finger protein 5
chr6-39 | chr6 | 124762262 | 124762464 | + | 13.8 | 0.826 | [NAME] (NM_009415, intron 4 of 6) | [NAME] (NM_009415, intron 4 of 6) | 1951 | NM_009415 | 21991 | Mm.439915 | NM_009415 | ENSMUSG00000023456 | Tpi1 | AI255506|Tpi|Tpi-1 | triosephosphate isomerase 1
chr2-14 | chr2 | 35724766 | 35724968 | + | 13.8 | 0.905 | intron (NM_029774, intron 6 of 9) | intron (NM_029774, intron 6 of 9) | 50157 | NR_040618 | 77665 | Mm.400558 | NR_040618 |  | 9030204H09Rik | - | RIKEN cDNA 9030204H09 gene
chr12-68 | chr12 | 87569807 | 87570009 | + | 13.8 | 0.808 | Intergenic | B4|SINE|B4 | -12920 | NM_027405 | 70373 | Mm.252967 | NM_027405 | ENSMUSG00000021254 | 1700020O03Rik | 4732487G21Rik|A630090I05Rik|Kiaa1152 | RIKEN cDNA 1700020O03 gene
chr11-111 | chr11 | 115626525 | 115626727 | + | 13.8 | 0.88 | promoter-TSS (NM_028014) | promoter-TSS (NM_028014) | -121 | NM_028014 | 71947 | Mm.23168 | NM_028014 | ENSMUSG00000020747 | 2310067B10Rik | Kiaa0195|mKIAA0195 | RIKEN cDNA 2310067B10 gene
chr4-21 | chr4 | 106693651 | 106693853 | + | 13.8 | 0.667 | [NAME] (NM_198438, intron 5 of 16) | MER58A|DNA|MER1_type | 45719 | NM_025500 | 56280 | Mm.29517 | NM_025500 | ENSMUSG00000028622 | Mrpl37 | 2300004O14Rik|AI132596|MRP-L2|Rpml2 | mitochondrial ribosomal protein L37
chr12-83 | chr12 | 112548922 | 112549124 | + | 13.8 | 0.654 | [NAME] (NM_183016, intron 21 of 36) | [NAME] (NM_183016, intron 21 of 36) | 39701 | NM_033603 | 93835 | Mm.197639 | NM_033603 | ENSMUSG00000021278 | [NAME] | 5033428N14Rik|AV002116 | amnionless
chr5-24 | chr5 | 113655683 | 113655885 | + | 13.8 | 0.621 | promoter-TSS (NM_001033428) | promoter-TSS (NM_001033428) | -145 | NM_001033428 | 333048 | Mm.332586 | NM_001033428 | ENSMUSG00000066964 | Tmem211 | Gm854 | [NAME] 211
chr2-15 | chr2 | 84887897 | 84888099 | + | 13.8 | 0.846 | TTS (NM_182990) | TTS (NM_182990) | -2619 | NM_001081260 | 228140 | Mm.23606 | NM_001081260 | ENSMUSG00000033955 | Tnks1bp1 | Tab182|mKIAA1741 | tankyrase 1 binding protein 1
chr5-25 | chr5 | 121070749 | 121070951 | + | 13.8 | 0.769 | [NAME] (NM_028041, intron 10 of 19) | [NAME] (NM_028041, intron 10 of 19) | 7711 | NM_028041 | 71990 | [NAME] | NM_028041 | ENSMUSG00000029599 | [NAME] | 2410015A15Rik|AI414901|DP97 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 54
chr12-78 | chr12 | 110338375 | 110338577 | + | 13.8 | 0.615 | Intergenic | Intergenic | -32049 | NM_001163175 | 380785 | Mm.342085 | NM_001163175 | ENSMUSG00000040867 | Begain | BM948371|Gm897 | brain-enriched guanylate kinase-associated
chr8-131 | chr8 | 34784618 | 34784820 | + | 13.8 | 0.87 | intron (NM_010344, intron 5 of 12) | intron (NM_010344, intron 5 of 12) | 21009 | NM_010344 | 14782 | Mm.489635 | NM_010344 | ENSMUSG00000031584 | Gsr | AI325518|D8Ertd238e|Gr-1|Gr1 | glutathione reductase
chr12-75 | chr12 | 104771098 | 104771300 | + | 13.8 | 0.818 | intron (NM_028980, intron 1 of 24) | intron (NM_028980, intron 1 of 24) | 424 | NM_028980 | 74521 | Mm.248619 | NM_028980 | ENSMUSG00000021209 | Ppp4r4 | 8430415E04Rik|mKIAA1622 | protein phosphatase 4, regulatory subunit 4
chr15-9 | chr15 | 102239870 | 102240072 | + | 13.8 | 0.826 | exon (NM_013672, exon 3 of 6) | exon (NM_013672, exon 3 of 6) | 3224 | NM_013672 | 20683 | Mm.4618 | NM_013672 | ENSMUSG00000001280 | Sp1 | 1110003E12Rik|AA450830|AI845540|Sp1-1 | trans-acting transcription factor 1
chr8-138 | chr8 | 87370228 | 87370430 | + | 13.8 | 0.696 | intron (NM_007591, intron 1 of 8) | intron (NM_007591, intron 1 of 8) | 501 | NM_007591 | 12317 | Mm.1971 | NM_007591 | ENSMUSG00000003814 | Calr | CRT|Calregulin | calreticulin
[NAME] | chr11 | 99982663 | 99982865 | + | 13.8 | 0.769 | promoter-TSS (NM_010662) | promoter-TSS (NM_010662) | 45 | NM_010662 | 16663 | Mm.4646 | NM_010662 | ENSMUSG00000044041 | [NAME] | CK13|K13|Krt-1.13|Krt1-13 | keratin 13
chr12-67 | chr12 | 87496327 | 87496529 | + | 13.8 | 0.783 | [NAME] of 7) | [NAME] of 7) | -13863 | NR_046081 | 328136 | Mm.312050 | NR_046081 |  | Gm805 | - | predicted gene 805
chr12-92 | chr12 | 114139089 | 114139291 | + | 13.8 | 0.692 | Intergenic | Intergenic | 28516 | NM_010588 | 16450 | Mm.186146 | NM_010588 | ENSMUSG00000002799 | Jag2 | D12Ggc2e|Serh|mJagged2-1|sm | jagged 2
chr13-22 | chr13 | 95452419 | 95452621 | + | 13.8 | 0.727 | Intergenic | L1MB2|LINE|L1 | -106378 | NM_009321 | 21371 | Mm.379025 | NM_009321 | ENSMUSG00000042043 | Tbca | - | tubulin cofactor A
chr8-143 | chr8 | 123157112 | 123157314 | + | 13.8 | 0.708 | intron (NM_197988, intron 1 of 3) | intron (NM_197988, intron 1 of 3) | 1069 | NM_197988 | 68918 | Mm.473736 | NM_197988 | ENSMUSG00000043687 | 1190005I06Rik | - | RIKEN cDNA 1190005I06 gene
chr11-109 | chr11 | 98824382 | 98824584 | + | 13.8 | 0.692 | [NAME] (NM_001176528, intron 1 of 7) | [NAME] (NM_001176528, intron 1 of 7) | 2698 | NM_001176528 | 19401 | Mm.439744 | NM_001176528 | ENSMUSG00000037992 | Rara | Nr1b1|RAR|RARalpha1 | retinoic acid receptor, alpha
chr8-134 | chr8 | 86131527 | 86131729 | + | 13.8 | 0.708 | promoter-TSS (NM_018808) | promoter-TSS (NM_018808) | -446 | NM_018808 | 81489 | Mm.282092 | NM_018808 | ENSMUSG00000005483 | Dnajb1 | 0610007I11Rik|HSPF1|Hsp40 | DnaJ (Hsp40) homolog, subfamily B, member 1
chr6-36 | chr6 | 88792023 | 88792225 | + | 13.8 | 0.72 | promoter-TSS (NM_030251) | promoter-TSS (NM_030251) | -195 | [NAME] | 80283 | Mm.166858 | [NAME] | ENSMUSG00000030083 | Abtb1 | AI847549|BC003234|BPOZ|EF1ABP|MGC7237 | ankyrin repeat and BTB (POZ) domain containing 1
chr12-80 | chr12 | 110779907 | 110780109 | + | 13.8 | 0.704 | [NAME] (NR_046475, intron 1 of 9) | [NAME] (NR_046475, intron 1 of 9) | 802 | NR_027651 | 17263 | Mm.442513 | NR_003633 |  | Meg3 | 2900016C05Rik|3110050O07Rik|6330408G06Rik|AI425946|AW108224|D12Bwg1266e|Gtl2|R74756|R75394 | maternally expressed 3
chr6-41 | chr6 | 137969009 | 137969211 | + | 13.8 | 0.9 | [NAME] (NM_177787, intron 5 of 8) | RLTR20B1|LTR|ERVK | 59327 | NM_177787 | 277898 | Mm.269823 | NM_177787 | ENSMUSG00000044378 | Slc15a5 | 9830102E05Rik | solute carrier family 15, member 5
chr14-18 | chr14 | 99700713 | 99700915 | + | 13.8 | 0.643 | exon (NM_009769, exon 2 of 4) | exon (NM_009769, exon 2 of 4) | 2904 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr9-44 | chr9 | 108726836 | 108727038 | + | 13.1 | 0.76 | Intergenic | Intergenic | -1714 | NM_080437 | 107934 | Mm.39945 | NM_080437 | ENSMUSG00000023473 | Celsr3 | Fmi1|flamingo|mKIAA0812 | cadherin, EGF LAG seven-pass G-type receptor 3 (flamingo homolog, Drosophila)
chr19-9 | chr19 | 5072668 | 5072870 | + | 13.1 | 0.621 | Intergenic | RSINE1|SINE|B4 | 4691 | NM_054042 | 70445 | Mm.29597 | NM_054042 | ENSMUSG00000056481 | Cd248 | 2610111G01Rik|AI842296|Cd164l1|Tem1 | CD248 antigen, endosialin
chr17-43 | chr17 | 27349564 | 27349766 | + | 13.1 | 0.81 | Intergenic | Intergenic | -8282 | NM_146075 | 224640 | Mm.29689 | NM_146075 | ENSMUSG00000044857 | [NAME] | BC026588|Lem2|MGC37253|NET25 | LEM domain containing 2
chr6-58 | chr6 | 131337474 | 131337676 | + | 13.1 | 0.75 | intron (NM_011733, intron 1 of 8) | intron (NM_011733, intron 1 of 8) | 893 | NM_139117 | 56449 | Mm.458000 | NM_011733 | ENSMUSG00000030189 | Csda | Dpba|MSY3|MSY4|Yb2|Ybx3|dbpA|oxyR | cold shock domain protein A
chr8-174 | chr8 | 119896300 | 119896502 | + | 13.1 | 0.773 | [NAME] (NM_028941, intron 1 of 20) | [NAME] (NM_028941, intron 1 of 20) | 23331 | NM_028941 | 74440 | Mm.233181 | NM_001163262 | ENSMUSG00000034390 | 4933407C03Rik | 5830471E12Rik|AI314065|AI464126|Cmip | RIKEN cDNA 4933407C03 gene
chr11-123 | chr11 | 113571230 | 113571432 | + | 13.1 | 0.75 | promoter-TSS (NM_001164532) | promoter-TSS (NM_001164532) | 0 | NM_029794 | 52670 | Mm.229207 | NM_001164532 | ENSMUSG00000018727 | Cpsf4l | 0610010C04Rik|1500000C01Rik|D11Ertd636e | cleavage and polyadenylation specific factor 4-like
chr10-18 | chr10 | 78037256 | 78037458 | + | 13.1 | 0.68 | 5' UTR (NM_173751, exon 1 of 16) | 5' UTR (NM_173751, exon 1 of 16) | 112 | NM_173751 | 216136 | Mm.2644 | NM_173751 | ENSMUSG00000032763 | Ilvbl | 5830463I21|AI415009 | ilvB (bacterial acetolactate synthase)-like
chr1-70 | chr1 | 88207355 | 88207557 | + | 13.1 | 0.76 | Intergenic | Intergenic | 7660 | NM_145222 | 227327 | Mm.86467 | NM_145222 | ENSMUSG00000079445 | B3gnt7 | C330001H22Rik|beta-3GnT7 | UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 7
chr6-61 | chr6 | 142267165 | 142267367 | + | 13.1 | 0.72 | [NAME] (NM_130861, intron 1 of 14) | [NAME] (NM_130861, intron 1 of 14) | 4204 | NM_130861 | 108096 | Mm.206599 | NM_001267707 | ENSMUSG00000063975 | Slco1a5 | Oatp-3|Oatp3|Slc21a7 | solute carrier organic anion transporter family, member 1a5
chr16-18 | chr16 | 30065299 | 30065501 | + | 13.1 | 0.75 | promoter-TSS (NM_008235) | promoter-TSS (NM_008235) | -43 | NM_008235 | 15205 | Mm.390859 | NM_008235 | ENSMUSG00000022528 | Hes1 | Hry|bHLHb39 | hairy and enhancer of split 1 (Drosophila)
[NAME] | chr11 | 69651660 | 69651862 | + | 13.1 | 0.621 | promoter-TSS (NM_026982) | promoter-TSS (NM_026982) | -266 | NM_026982 | 69186 | Mm.248772 | NM_026982 | [NAME] | 1810027O10Rik | 3110009M16Rik|RP23-422L16.23 | RIKEN cDNA 1810027O10 gene
chr12-97 | chr12 | 27283499 | 27283701 | + | 13.1 | 0.947 | Intergenic | C-rich|Low_complexity|Low_complexity | 129520 | NM_020557 | 22169 | Mm.271839 | NM_020557 | ENSMUSG00000020638 | Cmpk2 | 1200004E04Rik|TDKI|Tyki | cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial
chr12-117 | chr12 | 102440968 | 102441170 | + | 13.1 | 0.773 | Intergenic | Lx2|LINE|L1 | 57250 | NR_033653 | 74947 | Mm.488905 | NR_033653 |  | [NAME] | 4930463M05Rik|Kif4b | [NAME] member 4, pseudogene
chr11-124 | chr11 | 118941193 | 118941395 | + | 13.1 | 0.68 | 3' UTR (NM_007625, exon 5 of 5) | 3' UTR (NM_007625, exon 5 of 5) | 6257 | NM_007625 | 12418 | Mm.471550 | NM_007625 | ENSMUSG00000039989 | Cbx4 | MGC143697|MGC143698|MPc2|PC2 | chromobox homolog 4 (Drosophila Pc class)
chr8-171 | chr8 | 110179552 | 110179754 | + | 13.1 | 0.652 | Intergenic | ID_B1|SINE|B4 | -67271 | NM_010817 | 17463 | Mm.18347 | NM_010817 | ENSMUSG00000039067 | Psmd7 | AW107203|Mov-34|Mov34 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
chr18-19 | chr18 | 75759607 | 75759809 | + | 13.1 | 0.654 | [NAME] (NM_201354, intron 6 of 11) | RMER1C|Other|Other | 85409 | NR_045879 | 100038353 | Mm.440724 | NR_045879 |  | Gm10532 | ENSMUSG00000073534 | predicted gene 10532
chrX-19 | chrX | 4256648 | 4256850 | + | 13.1 | 0.762 | Intergenic | RMER17A2|LTR|ERVK | 36766 | NR_040410 | 546185 | Mm.359482 | NR_040410 |  | Gm5925 | EG546185 | germ cell-less homolog 1 family pseudogene
chr8-148 | chr8 | 10477674 | 10477876 | + | 13.1 | 0.773 | [NAME] (NM_001081397, intron 23 of 35) | [NAME] (NM_001081397, intron 23 of 35) | 323852 | NM_001081397 | 244281 | Mm.422761 | NM_001081397 | ENSMUSG00000039057 | Myo16 | C230040D10Rik|Gm1105|KIAA0865|NYAP3|mKIAA0865 | [NAME]
chr19-12 | chr19 | 43690319 | 43690521 | + | 13.1 | 0.826 | TTS (NM_008699) | TTS (NM_008699) | 3605 | NM_008699 | 18089 | Mm.56994 | NM_008699 | ENSMUSG00000044220 | Nkx2-3 | Nkx-2.3|Nkx2.3|tinman | NK2 transcription factor related, locus 3 (Drosophila)
chr2-18 | chr2 | 144541969 | 144542171 | + | 13.1 | 0.81 | [NAME] (NM_025314, intron 4 of 5) | L1MEc|LINE|L1 | -107332 | NM_025490 | 66328 | Mm.45377 | NM_025490 | ENSMUSG00000027431 | 1700010M22Rik | - | RIKEN cDNA 1700010M22 gene
chr4-41 | chr4 | 127002161 | 127002363 | + | 13.1 | 0.68 | TTS (NM_008126) | TTS (NM_008126) | 4107 | NM_008126 | 14620 | Mm.90003 | NM_001160012 | ENSMUSG00000042367 | Gjb3 | Cnx31|Cx31|D4Wsu144e|Gjb-3 | gap junction protein, beta 3
chr6-46 | chr6 | 114444596 | 114444798 | + | 13.1 | 0.947 | Intergenic | Intergenic | 91037 | NM_001252643 | 15465 | Mm.333327 | NM_008285 | ENSMUSG00000053004 | Hrh1 | Bphs|H1R|HH1R|Hir | histamine receptor H1
chr6-44 | chr6 | 33199003 | 33199205 | + | 13.1 | 0.905 | promoter-TSS (NM_009148) | promoter-TSS (NM_009148) | -46 | NM_009148 | 20336 | Mm.265512 | NM_009148 | ENSMUSG00000029763 | Exoc4 | C78892|Sec8|Sec8l1 | exocyst complex component 4
chrX-20 | chrX | 72919375 | 72919577 | + | 13.1 | 0.63 | Intergenic | Intergenic | 90562 | NR_029443 | 74396 | Mm.490098 | NR_029443 |  | 4933407K13Rik | [NAME] | RIKEN cDNA 4933407K13 gene
chr7-19 | chr7 | 6682458 | 6682660 | + | 13.1 | 0.727 | promoter-TSS (NM_021323) | promoter-TSS (NM_021323) | 571 | NM_008817 | 18616 | Mm.389800 | NM_008817 | ENSMUSG00000002265 | [NAME] | AL022617|ASF-1|End4|Gcap4|Pw1|Zfp102|mKIAA0287 | paternally expressed 3
chr12-146 | chr12 | 117061123 | 117061325 | + | 13.1 | 0.679 | Intergenic | L1_Mus2|LINE|L1 | -224711 | NM_001004066 | 56220 | Mm.254997 | NM_001004066 | ENSMUSG00000042063 | Zfp386 | KIAA4205|Kzf1|mKIAA4205 | zinc finger protein 386 (Kruppel-like)
chr6-53 | chr6 | 127348216 | 127348418 | + | 13.1 | 0.762 | Intergenic | ORR1B2|LTR|MaLR | -55424 | NM_181402 | 101187 | Mm.110818 | NM_181402 | ENSMUSG00000037997 | Parp11 | 5330431N24Rik|AI851877|HIN1L | poly (ADP-ribose) polymerase family, member 11
chr4-33 | chr4 | 95436128 | 95436330 | + | 13.1 | 0.783 | [NAME] (NM_001113412, intron 8 of 15) | [NAME] (NM_001113412, intron 8 of 15) | 190117 | NM_029347 | 75578 | Mm.276098 | NM_001113412 | ENSMUSG00000028573 | Fggy | 2310009E04Rik|MGC118640 | FGGY carbohydrate kinase domain containing
chr11-120 | chr11 | 87406193 | 87406395 | + | 13.1 | 0.708 | [NAME] (NM_133215, intron 1 of 18) | [NAME] (NM_133215, intron 1 of 18) | 575 | NM_133215 | 170749 | Mm.399376 | NM_133215 | ENSMUSG00000018401 | Mtmr4 | AA596759|ESTM44|FYVE-DSP2|ZFYVE11|mKIAA0647 | myotubularin related protein 4
chr1-73 | chr1 | 175777841 | 175778043 | + | 13.1 | 0.769 | Intergenic | Lx|LINE|L1 | 32376 | NM_001170853 | 100040462 | Mm.463437 | NM_001170853 | ENSMUSG00000090272 | Mndal | Gm2785 | myeloid nuclear differentiation antigen like
chr12-125 | chr12 | 107134692 | 107134894 | + | 13.1 | 0.652 | Intergenic | MMERGLN-int|LTR|ERV1 | 111881 | NM_011112 | 18789 | Mm.255877 | NM_011112 | ENSMUSG00000021111 | Papola | Pap|PapIII|Plap | poly (A) polymerase alpha
chr7-21 | chr7 | 19893596 | 19893798 | + | 13.1 | 0.87 | [NAME] (NM_008036, intron 1 of 3) | [NAME] (NM_008036, intron 1 of 3) | 1697 | NM_008036 | 14282 | Mm.248335 | NM_008036 | ENSMUSG00000003545 | Fosb | - | FBJ osteosarcoma oncogene B
chr13-25 | chr13 | 53810745 | 53810947 | + | 13.1 | 0.75 | Intergenic | Intergenic | -242697 | NM_013601 | 17702 | Mm.1763 | NM_013601 | ENSMUSG00000021469 | Msx2 | BB122635|Hox-8|Hox8|Hox8.1 | homeobox, msh-like 2
chr12-111 | chr12 | 91308906 | 91309108 | + | 13.1 | 0.682 | [NAME] (NM_172544, intron 15 of 19) | [NAME] (NM_172544, intron 15 of 19) | 258111 | NM_001252074 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr6-49 | chr6 | 120107156 | 120107358 | + | 13.1 | 0.652 | [NAME] 3) | ZP3AR|Satellite|Satellite | 63859 | NM_016718 | 29862 | [NAME] | NM_016718 | ENSMUSG00000041377 | Ninj2 | MGC143502 | ninjurin 2
chr15-11 | chr15 | 77189053 | 77189255 | + | 13.1 | 0.762 | Intergenic | Intergenic | 40386 | NM_029419 | 75761 | Mm.232636 | NM_001164640 | ENSMUSG00000010601 | Apol7a | 9130022K13Rik|Apol3 | apolipoprotein L 7a
chr5-29 | chr5 | 38530099 | 38530301 | + | 13.1 | 0.714 | [NAME] (NM_010942, intron 4 of 4) | [NAME] (NM_010942, intron 4 of 4) | 20506 | NM_010942 | 18196 | Mm.7414 | NM_010942 | ENSMUSG00000029126 | Nsg1 | Neep21|m234|p21 | neuron specific gene family member 1
chr14-22 | chr14 | 98989205 | 98989407 | + | 13.1 | 0.81 | Intergenic | Intergenic | -420544 | NM_007826 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr12-108 | chr12 | 88748929 | 88749131 | + | 13.1 | 0.654 | Intergenic | Intergenic | -19850 | NM_011479 | 20773 | Mm.565 | NM_011479 | ENSMUSG00000021036 | Sptlc2 | AI173915|LCB2|mKIAA0526 | [NAME], long chain base subunit 2
chr8-162 | chr8 | 98233606 | 98233808 | + | 13.1 | 0.68 | exon (NM_145602, exon 9 of 14) | exon (NM_145602, exon 9 of 14) | -6106 | NM_001035123 | 66083 | Mm.261321 | NM_001035123 | ENSMUSG00000031671 | Setd6 | 0610039J04Rik|3110004G14Rik|AI413388|C76402 | SET domain containing 6
chr8-169 | chr8 | 109936543 | 109936745 | + | 13.1 | 0.8 | 3' UTR (NM_026277, exon 9 of 9) | 3' UTR (NM_026277, exon 9 of 9) | -9539 | NM_008706 | 18104 | Mm.252 | NM_008706 | ENSMUSG00000003849 | [NAME] | AV001255|Dia4|Dtd|Nmo-1|Nmo1|Nmor1|Ox-1|Ox1|Qr1 | NAD(P)H dehydrogenase, quinone 1
chr11-122 | chr11 | 95842875 | 95843077 | + | 13.1 | 0.667 | [NAME] (NM_009951, intron 2 of 14) | B1_Mm|SINE|Alu | -18279 | NR_037223 | 100526468 |  | NR_037223 |  | Mir3063 | mmu-mir-3063 | microRNA 3063
chr10-19 | chr10 | 79316832 | 79317034 | + | 13.1 | 0.593 | promoter-TSS (NM_008956) | promoter-TSS (NM_008956) | -417 | NM_001077363 | 19205 | Mm.265610 | NM_001077363 | ENSMUSG00000006498 | Ptbp1 | AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB | polypyrimidine tract binding protein 1
chr6-60 | chr6 | 137103357 | 137103559 | + | 13.1 | 0.727 | intron (NM_001164212, intron 2 of 4) | intron (NM_001164212, intron 2 of 4) | 14781 | NM_001164214 | 232441 | Mm.46233 | NM_001164212 | ENSMUSG00000030222 | [NAME] | - | RAS-like, estrogen-regulated, growth-inhibitor
chr8-173 | chr8 | 116020898 | 116021100 | + | 13.1 | 0.864 | Intergenic | Intergenic | -138487 | NM_001048143 | 270096 | Mm.74689 | NM_001048143 | ENSMUSG00000078908 | Mon1b | 5031407H10|5033413H12Rik | MON1 homolog b (yeast)
chr12-120 | chr12 | 105860785 | 105860987 | + | 13.1 | 0.731 | Intergenic | Intergenic | 129276 | NM_148948 | 192119 | Mm.21135 | NM_148948 | ENSMUSG00000041415 | Dicer1 | 1110006F08Rik|D12Ertd7e|mKIAA0928 | dicer 1, ribonuclease type III
chr4-47 | chr4 | 154334152 | 154334354 | + | 13.1 | 0.727 | promoter-TSS (NM_010419) | promoter-TSS (NM_010419) | -779 | NM_010419 | 15208 | Mm.137268 | NM_010419 | ENSMUSG00000048001 | Hes5 | bHLHb38 | hairy and enhancer of split 5 (Drosophila)
chr17-42 | chr17 | 25864454 | 25864656 | + | 13.1 | 0.783 | promoter-TSS (NM_028009) | promoter-TSS (NM_028009) | -141 | NM_028009 | 106707 | Mm.24603 | NM_028009 | ENSMUSG00000041199 | Rpusd1 | 2310051D06Rik|AU019540|Rlucl | RNA pseudouridylate synthase domain containing 1
chr8-165 | chr8 | 107813570 | 107813772 | + | 13.1 | 0.762 | promoter-TSS (NM_028888) | promoter-TSS (NM_028888) | -243 | NM_028888 | 74356 | Mm.487679 | NM_001166394 | ENSMUSG00000014837 | 4931428F04Rik | AI426165|Kiaa0895l | RIKEN cDNA 4931428F04 gene
chr12-98 | chr12 | 86863400 | 86863602 | + | 13.1 | 0.833 | Intergenic | Intergenic | 48650 | NM_010234 | 14281 | Mm.246513 | NM_010234 | ENSMUSG00000021250 | Fos | D12Rfj1|c-fos|cFos | FBJ osteosarcoma oncogene
chr12-116 | chr12 | 101998367 | 101998569 | + | 13.1 | 0.75 | Intergenic | Intergenic | -18865 | NM_145448 | 217830 | Mm.218590 | NM_145448 | ENSMUSG00000021185 | 9030617O03Rik | - | RIKEN cDNA 9030617O03 gene
chr2-16 | chr2 | 32426390 | 32426592 | + | 13.1 | 0.783 | [NAME] 3) | [NAME] 3) | 113 | NM_010073 | 13481 | Mm.22001 | NM_010073 | ENSMUSG00000026810 | Dpm2 | AW557993|R75484 | dolichol-phosphate (beta-D) mannosyltransferase 2
chr14-25 | chr14 | 99813229 | 99813431 | + | 13.1 | 0.857 | Intergenic | B4A|SINE|B4 | 115420 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr12-101 | chr12 | 87574918 | 87575120 | + | 13.1 | 0.947 | Intergenic | ID_B1|SINE|B4 | -7809 | NM_027405 | 70373 | Mm.252967 | NM_027405 | ENSMUSG00000021254 | 1700020O03Rik | 4732487G21Rik|A630090I05Rik|Kiaa1152 | RIKEN cDNA 1700020O03 gene
chr6-45 | chr6 | 39370602 | 39370804 | + | 13.1 | 0.905 | promoter-TSS (NM_018810) | promoter-TSS (NM_018810) | -335 | NM_018810 | 54484 | Mm.270484 | NM_018810 | ENSMUSG00000029922 | Mkrn1 | RFP | makorin, ring finger protein, 1
chr8-168 | chr8 | 109132293 | 109132495 | + | 13.1 | 0.833 | intron (NM_009864, intron 2 of 15) | intron (NM_009864, intron 2 of 15) | 5126 | NM_009864 | 12550 | Mm.35605 | NM_009864 | ENSMUSG00000000303 | Cdh1 | AA960649|Ecad|L-CAM|MGC107495|UVO|Um | cadherin 1
chr6-54 | chr6 | 128714384 | 128714586 | + | 13.1 | 0.667 | Intergenic | Intergenic | 24174 | NM_008527 | 17059 | Mm.480764 | NM_001159904 | ENSMUSG00000030325 | Klrb1c | AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c | killer cell lectin-like receptor subfamily B member 1C
chr17-48 | chr17 | 47872610 | 47872812 | + | 13.1 | 0.864 | Intergenic | Intergenic | -1275 | NM_001161722 | 21425 | Mm.2305 | NM_001161722 | [NAME] | [NAME] | Tcfeb|bHLHe35 | transcription factor [NAME]
chr19-11 | chr19 | 41517152 | 41517354 | + | 13.1 | 0.667 | Intergenic | Intergenic | -57693 | NM_031376 | 83490 | Mm.222266 | NM_031376 | ENSMUSG00000025017 | Pik3ap1 | 1810044J04Rik|BCAP | phosphoinositide-3-kinase adaptor protein 1
chr8-183 | chr8 | 126017681 | 126017883 | + | 13.1 | 0.8 | exon (NM_054070, exon 11 of 17) | exon (NM_054070, exon 11 of 17) | 16020 | NR_028260 | 114896 | Mm.287475 | NM_054070 | ENSMUSG00000031967 | Afg3l1 | 1700047G05Rik|3110061K15Rik | AFG3(ATPase family gene 3)-like 1 (yeast)
chr17-46 | chr17 | 30752418 | 30752620 | + | 13.1 | 0.68 | Intergenic | Intergenic | -2915 | NM_001113560 | 109801 | Mm.391637 | NM_001113560 | ENSMUSG00000024026 | Glo1 | 0610009E22Rik|1110008E19Rik|2510049H23Rik|AW550643|GLY1|Glo-1|Glo-1r|Glo-1s|Glo1-r|Glo1-s|Qglo | glyoxalase 1
chr8-177 | chr8 | 121976836 | 121977038 | + | 13.1 | 0.625 | intron (NM_054095, intron 3 of 12) | intron (NM_054095, intron 3 of 12) | 6318 | NM_054095 | 117148 | Mm.356184 | NM_054095 | ENSMUSG00000031837 | Necab2 | Efcbp2|MGC141287|MGC141288 | N-terminal EF-hand calcium binding protein 2
chr12-109 | chr12 | 89459167 | 89459369 | + | 13.1 | 0.76 | Intergenic | Intergenic | -38930 | NM_001105254 | 100039315 | Mm.458830 | NM_001105254 | ENSMUSG00000072907 | Gm10436 | ENSMUSG00000072907|MGC107361 | predicted gene 10436
chr8-161 | chr8 | 87503740 | 87503942 | + | 13.1 | 0.842 | Intergenic | Intergenic | -1194 | NM_008416 | 16477 | Mm.1167 | NM_008416 | ENSMUSG00000052837 | [NAME] | - | Jun-B oncogene
chr7-18 | chr7 | 4453636 | 4453838 | + | 13.1 | 0.625 | promoter-TSS (NM_029834) | promoter-TSS (NM_029834) | -455 | NM_029834 | 232807 | Mm.360391 | NM_029834 | ENSMUSG00000019254 | Ppp1r12c | 2410197A17Rik|AI839747|B430101M08|Mbs85 | protein phosphatase 1, regulatory (inhibitor) subunit 12C
chr1-72 | chr1 | 173467662 | 173467864 | + | 13.1 | 0.9 | Intergenic | B4A|SINE|B4 | -2338 | NM_010584 | 16429 | Mm.247426 | NM_010584 | ENSMUSG00000038209 | [NAME] | IntL|Itln|Itln2|Itln5|Itlna|Lfr|MGC183671|MGC183706 | intelectin 1 (galactofuranose binding)
chr12-126 | chr12 | 107732936 | 107733138 | + | 13.1 | 0.68 | Intergenic | Intergenic | -47161 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr15-10 | chr15 | 76859953 | 76860155 | + | 13.1 | 0.667 | [NAME] (NM_013593, intron 1 of 3) | [NAME] (NM_013593, intron 1 of 3) | -6837 | NM_001164047 | 17189 | Mm.404074 | NM_001164047 | ENSMUSG00000018893 | Mb | AI325109 | myoglobin
chr7-22 | chr7 | 20213932 | 20214134 | + | 13.1 | 0.571 | [NAME] (NM_009046, intron 1 of 10) | [NAME] (NM_009046, intron 1 of 10) | 754 | NM_009046 | 19698 | Mm.1741 | NM_009046 | ENSMUSG00000002983 | Relb | MGC143683|MGC143684|shep | avian reticuloendotheliosis viral (v-rel) oncogene related B
chr8-147 | chr8 | 8661834 | 8662036 | + | 13.1 | 0.783 | Intergenic | Intergenic | -1162 | NM_010111 | 13642 | Mm.209813 | NM_010111 | ENSMUSG00000001300 | Efnb2 | ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 | ephrin B2
chr10-15 | chr10 | 53316209 | 53316411 | + | 13.1 | 0.842 | promoter-TSS (NM_025541) | promoter-TSS (NM_025541) | -457 | NM_025541 | 66403 | Mm.272989 | NM_025541 | ENSMUSG00000019857 | [NAME] | 2310079C17Rik|C79052 | ASF1 anti-silencing function 1 homolog A (S. cerevisiae)
chr2-17 | chr2 | 73404263 | 73404465 | + | 13.1 | 0.905 | exon (NM_007389, exon 9 of 9) | exon (NM_007389, exon 9 of 9) | 13999 | NM_007389 | 11435 | Mm.4583 | NM_007389 | ENSMUSG00000027107 | Chrna1 | AI385656|AI608266|Achr-1|Acra | [NAME], nicotinic, alpha polypeptide 1 (muscle)
chr8-151 | chr8 | 13074696 | 13074898 | + | 13.1 | 0.783 | 3' UTR (NM_025834, exon 8 of 8) | 3' UTR (NM_025834, exon 8 of 8) | 13889 | NM_025834 | 66901 | Mm.441140 | NM_025834 | ENSMUSG00000031445 | Proz | 1300015B06Rik | protein Z, vitamin K-dependent plasma glycoprotein
chr15-13 | chr15 | 99508917 | 99509119 | + | 13.1 | 0.81 | [NAME] (NM_009597, intron 3 of 11) | [NAME] (NM_009597, intron 3 of 11) | 7869 | NM_009597 | 11419 | Mm.440107 | NM_009597 | ENSMUSG00000023017 | Accn2 | [NAME] | amiloride-sensitive cation channel 2, neuronal
[NAME] | chr14 | 99653012 | 99653214 | + | 13.1 | 0.72 | intron (NM_029320, intron 17 of 17) | intron (NM_029320, intron 17 of 17) | -44797 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr12-115 | chr12 | 101426071 | 101426273 | + | 13.1 | 0.75 | promoter-TSS (NR_045282) | promoter-TSS (NR_045282) | -6 | NR_045282 | 100038378 | Mm.387075 | NR_045282 |  | Gm10433 | ENSMUSG00000072884 | predicted gene 10433
chr12-106 | chr12 | 88438701 | 88438903 | + | 13.1 | 0.81 | 3' UTR (NM_022414, exon 4 of 4) | 3' UTR (NM_022414, exon 4 of 4) | 4687 | NM_022414 | 64242 | Mm.41395 | NM_022414 | ENSMUSG00000021032 | Ngb | - | [NAME]
chr12-113 | chr12 | 99971830 | 99972032 | + | 13.1 | 0.68 | 5' UTR (NM_001146199, exon 2 of 19) | 5' UTR (NM_001146199, exon 2 of 19) | 924 | NM_011877 | 24000 | Mm.483252 | NM_001146199 | ENSMUSG00000021009 | Ptpn21 | MGC107492|PTPD1|PTPRL10 | protein tyrosine phosphatase, non-receptor type 21
chr4-43 | chr4 | 133638275 | 133638477 | + | 13.1 | 0.909 | intron (NM_001162970, intron 13 of 19) | intron (NM_001162970, intron 13 of 19) | 12612 | NM_013706 | 23833 | Mm.24130 | NM_013706 | ENSMUSG00000000682 | Cd52 | AI463198|B7|B7-Ag|CAMPATH-1|CLS1|MB7 | CD52 antigen
chr16-17 | chr16 | 20371786 | 20371988 | + | 13.1 | 0.818 | intron (NM_013790, intron 17 of 29) | intron (NM_013790, intron 17 of 29) | -46410 | NM_183158 | 224044 | Mm.276400 | NM_183158 | ENSMUSG00000022818 | Cyp2ab1 | EG224044|F730023N20 | cytochrome P450, family 2, subfamily ab, polypeptide 1
chr12-132 | chr12 | 111773474 | 111773676 | + | 13.1 | 0.643 | intron (NM_012023, intron 2 of 13) | L1ME1|LINE|L1 | 49626 | NM_012023 | 26931 | Mm.458056 | NM_001037934 | ENSMUSG00000017843 | [NAME] | 2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044 | protein phosphatase 2, regulatory subunit B (B56), gamma isoform
chr10-20 | chr10 | 81014624 | 81014826 | + | 13.1 | 0.727 | Intergenic | Intergenic | -6934 | NM_010301 | 14672 | Mm.471081 | NM_010301 | [NAME] | Gna11 | Dsk7|E430025L19 | guanine nucleotide binding protein, alpha 11
chr8-176 | chr8 | 121457738 | 121457940 | + | 13.1 | 0.739 | [NAME] (NM_019707, intron 5 of 13) | [NAME] (NM_019707, intron 5 of 13) | -410599 | NM_024219 | 68196 | Mm.358714 | NM_024219 | ENSMUSG00000031839 | Hsbp1 | 0610007A03Rik|AA408769|Hsp25 | heat shock factor binding protein 1
chr4-35 | chr4 | 108011530 | 108011732 | + | 13.1 | 0.708 | 3' UTR (NM_027250, exon 3 of 3) | 3' UTR (NM_027250, exon 3 of 3) | 10874 | NM_027250 | 69893 | Mm.28354 | NM_027250 | ENSMUSG00000048351 | 2010305A19Rik | AI451324|D4Ertd796e|Selrc1 | RIKEN cDNA 2010305A19 gene
chr1-63 | chr1 | 85227612 | 85227814 | + | 13.1 | 0.769 | Intergenic | L1Md_F|LINE|L1 | 31527 | NM_001081746 | 665378 | Mm.449722 | NM_001081746 |  | Gm7609 | EG665378 | predicted pseudogene 7609
chr11-118 | chr11 | 74985645 | 74985847 | + | 13.1 | 0.818 | Intergenic | Intergenic | -1144 | NR_029794 | 387208 |  | NR_029794 |  | Mir212 | [NAME] | microRNA 212
chr7-23 | chr7 | 51630429 | 51630631 | + | 13.1 | 0.667 | promoter-TSS (NM_027049) | promoter-TSS (NM_027049) | -130 | NM_027049 | 69349 | Mm.358922 | NM_027049 | ENSMUSG00000008028 | 1700008O03Rik | - | RIKEN cDNA 1700008O03 gene
chr7-25 | chr7 | 147135968 | 147136170 | + | 13.1 | 0.704 | Intergenic | Intergenic | 6314 | [NAME] | 22286 | Mm.10205 | [NAME] | ENSMUSG00000047751 | Utf1 | AI505934 | undifferentiated embryonic cell transcription factor 1
chr12-137 | chr12 | 112963125 | 112963327 | + | 13.1 | 0.826 | intron (NM_026511, intron 3 of 4) | intron (NM_026511, intron 3 of 4) | 11746 | NM_026511 | 68020 | Mm.425762 | NM_001163388 | ENSMUSG00000037787 | 2810002N01Rik | 1700081D05Rik|Apop-1|Apop1|Apopt1 | RIKEN cDNA 2810002N01 gene
chr8-185 | chr8 | 128189271 | 128189473 | + | 13.1 | 0.727 | Intergenic | B1F|SINE|Alu | -4346 | NM_028908 | 74393 | Mm.41709 | NM_028908 | ENSMUSG00000050930 | 4933403G14Rik | AI835009|KIAA1383|Kiaa1383|mKIAA1383 | RIKEN cDNA 4933403G14 gene
chr7-20 | chr7 | 13507431 | 13507633 | + | 13.1 | 0.762 | promoter-TSS (NM_009095) | promoter-TSS (NM_009095) | -128 | NM_009095 | 20103 | Mm.5291 | NM_009095 | ENSMUSG00000012848 | Rps5 | AA617411 | ribosomal protein S5
chr6-48 | chr6 | 118583359 | 118583561 | + | 13.1 | 0.773 | intron (NM_001255998, intron 31 of 47) | intron (NM_001255998, intron 31 of 47) | -71186 | NM_001081112 | 232339 | Mm.276116 | NM_001081112 | ENSMUSG00000007827 | Ankrd26 | 5730521P14Rik|BC008111|mKIAA1074 | ankyrin repeat domain 26
chr12-102 | chr12 | 87963237 | 87963439 | + | 13.1 | 0.577 | Intergenic | Intergenic | -56312 | NM_177354 | 238328 | Mm.216101 | NM_177354 | ENSMUSG00000021256 | [NAME] | AI834978|D930046M13Rik|G630009D10Rik | vasohibin 1
chr12-141 | chr12 | 113409533 | 113409735 | + | 13.1 | 0.792 | [NAME] (NM_001097621, intron 5 of 15) | [NAME] (NM_001097621, intron 5 of 15) | 25215 | NM_001097621 | 668303 | Mm.313104 | NM_001097621 | ENSMUSG00000021294 | Kif26a | KIAA1236|mKIAA1236 | [NAME] member 26A
chr8-163 | chr8 | 98356360 | 98356562 | + | 13.1 | 0.643 | Intergenic | Intergenic | 20930 | NM_172758 | 234595 | Mm.29267 | NM_172758 | ENSMUSG00000036534 | Slc38a7 | D430050E18|MGC25764 | solute carrier family 38, member 7
chr8-167 | chr8 | 108757264 | 108757466 | + | 13.1 | 0.739 | intron (NM_145404, intron 5 of 17) | ORR1C2|LTR|MaLR | 22411 | NM_145404 | 214572 | Mm.446217 | NM_145404 | ENSMUSG00000060098 | Prmt7 | 4933402B05Rik|BC006705|MGC7929 | protein arginine N-methyltransferase 7
chr19-10 | chr19 | 5806311 | 5806513 | + | 13.1 | 0.621 | Intergenic | Intergenic | -3741 | NR_002847 | 72289 | Mm.298256 | NR_002847 |  | Malat1 | 2210401K01Rik|9430072K23Rik|AI647968|NEAT2 | metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)
chr8-182 | chr8 | 124508740 | 124508942 | + | 13.1 | 0.667 | [NAME] of 13) | [NAME] of 13) | 34408 | NM_001110100 | 53325 | Mm.287163 | NM_001110100 | ENSMUSG00000025316 | Banp | AA408158|SMAR1 | BTG3 associated nuclear protein
chr19-8 | chr19 | 4793815 | 4794017 | + | 13.1 | 0.704 | promoter-TSS (NM_009032) | promoter-TSS (NM_009032) | -39 | NM_009032 | 19653 | Mm.426069 | NM_009032 | ENSMUSG00000006456 | Rbm4 | 4921506I22Rik|Lark1|Mlark|Rbm4a|lark | RNA binding motif protein 4
chr11-114 | chr11 | 50105963 | 50106165 | + | 13.1 | 0.818 | promoter-TSS (NM_175334) | promoter-TSS (NM_175334) | -226 | NM_175334 | 103806 | Mm.51116 | NM_175334 | ENSMUSG00000050567 | Maml1 | AI644666|AW743257|D930008C07Rik|Mam-1|Mam1|mKIAA0200 | mastermind like 1 (Drosophila)
chr4-31 | chr4 | 83170702 | 83170904 | + | 13.1 | 0.792 | promoter-TSS (NM_001081012) | promoter-TSS (NM_001081012) | -646 | NM_001081012 | 320226 | Mm.180032 | NM_001081012 | ENSMUSG00000052407 | 4930473A06Rik | 4930418J05Rik|A330015D16Rik|CCDC171 | RIKEN cDNA 4930473A06 gene
chr6-51 | chr6 | 121016344 | 121016546 | + | 13.1 | 0.696 | [NAME] (NM_153396, intron 1 of 17) | [NAME] (NM_153396, intron 1 of 17) | 15182 | NM_153396 | 194401 | [NAME] | NM_153396 | ENSMUSG00000003178 | Mical3 | C130040D16Rik|KIAA0819|Mical-3|mKIAA1364 | microtubule associated monoxygenase, calponin and LIM domain containing 3
chr12-114 | chr12 | 101425342 | 101425544 | + | 13.1 | 0.692 | promoter-TSS (NR_045282) | promoter-TSS (NR_045282) | -735 | NR_045282 | 100038378 | Mm.387075 | NR_045282 |  | Gm10433 | ENSMUSG00000072884 | predicted gene 10433
chr12-112 | chr12 | 93087672 | 93087874 | + | 13.1 | 0.85 | promoter-TSS (NM_011344) | promoter-TSS (NM_011344) | -176 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr12-107 | chr12 | 88565839 | 88566041 | + | 13.1 | 0.708 | exon (NM_027744, exon 5 of 8) | exon (NM_027744, exon 5 of 8) | 13611 | NM_027744 | 71275 | Mm.79198 | NM_027744 | ENSMUSG00000072919 | 4933437F05Rik | MGC118344|Noxred1 | RIKEN cDNA 4933437F05 gene
chr7-24 | chr7 | 52379797 | 52379999 | + | 13.1 | 0.762 | promoter-TSS (NM_013725) | promoter-TSS (NM_013725) | -139 | NM_013725 | 27207 | Mm.389435 | NM_013725 | ENSMUSG00000003429 | Rps11 | - | ribosomal protein S11
chr6-47 | chr6 | 118329904 | 118330106 | + | 13.1 | 0.667 | Intergenic | Intergenic | 39430 | [NAME] | 213895 | Mm.25269 | [NAME] | [NAME] | Bms1 | AA408648|AU020092|AU043373|BB007109|BC030906|Bms1l|KIAA0187|mKIAA0187 | BMS1 homolog, ribosome assembly protein (yeast)
chr6-57 | chr6 | 128795417 | 128795619 | + | 13.1 | 0.818 | Intergenic | Intergenic | -19185 | NM_030599 | 80782 | Mm.480764 | NM_030599 | ENSMUSG00000079298 | Klrb1b | [NAME] | killer cell lectin-like receptor subfamily B member 1B
chr14-23 | chr14 | 99452903 | 99453105 | + | 13.1 | 0.783 | [NAME] (NM_175265, intron 4 of 11) | [NAME] (NM_175265, intron 4 of 11) | 7408 | NM_175265 | 77744 | Mm.23503 | NM_175265 | ENSMUSG00000022070 | 6720463M24Rik | AI317232|Bora | RIKEN cDNA 6720463M24 gene
chr15-12 | chr15 | 97158026 | 97158228 | + | 13.1 | 0.857 | [NAME] (NM_172293, intron 3 of 5) | B3A|SINE|B2 | -80409 | NM_001164602 | 105827 | Mm.24005 | NM_001164563 | ENSMUSG00000048218 | Amigo2 | AI415330|AMIGO-2|AW208913|Ali1 | adhesion molecule with Ig like domain 2
chr13-26 | chr13 | 66091960 | 66092162 | + | 13.1 | 0.692 | Intergenic | Intergenic | -122328 | NM_001177832 | 628709 | Mm.390595 | NM_001177832 |  | Gm10324 | ENSMUSG00000071302 | predicted gene 10324
chr8-150 | chr8 | 11550876 | 11551078 | + | 13.1 | 0.773 | promoter-TSS (NM_024248) | promoter-TSS (NM_024248) | -206 | NM_024248 | 71941 | [NAME] | NM_024248 | ENSMUSG00000056228 | Cars2 | 2310051N18Rik|2410044A07Rik|D530030H10Rik | cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
chr4-36 | chr4 | 115844535 | 115844737 | + | 13.1 | 0.68 | Intergenic | Intergenic | -1341 | NM_001099295 | 67323 | Mm.45442 | NM_001099295 | ENSMUSG00000078593 | 1700042G07Rik | - | RIKEN cDNA 1700042G07 gene
chr11-119 | chr11 | 85656037 | 85656239 | + | 13.1 | 0.708 | TTS (NM_009324) | TTS (NM_009324) | 10021 | [NAME] | 21385 | Mm.287052 | [NAME] | ENSMUSG00000000093 | Tbx2 | - | T-box 2
chr4-42 | chr4 | 127617304 | 127617506 | + | 13.1 | 0.75 | [NAME] (NM_001134733, intron 4 of 6) | [NAME] (NM_001134733, intron 4 of 6) | 30680 | NM_001134733 | 635169 | Mm.346755 | NM_001134733 | ENSMUSG00000028813 | CK137956 | - | cDNA sequence CK137956
chr10-21 | chr10 | 120313348 | 120313550 | + | 13.1 | 0.864 | [NAME] (NM_177092, intron 1 of 6) | MLT1I|LTR|MaLR | 18764 | NR_038023 | 100504616 | Mm.451174 | NR_038023 |  | Gm15910 | OTTMUSG00000027725 | predicted gene 15910
chr8-175 | chr8 | 119995122 | 119995324 | + | 13.1 | 0.692 | Intergenic | Intergenic | -26968 | NM_172285 | 234779 | Mm.192699 | NM_172285 | ENSMUSG00000034330 | Plcg2 | MGC38590|PLCgamma2|Plcg-2 | phospholipase C, gamma 2
chr12-130 | chr12 | 110994543 | 110994745 | + | 13.1 | 0.667 | Intergenic | Intergenic | 8556 | NR_037233 | 100499517 |  | NR_037233 |  | Mir3072 | mmu-mir-3072 | microRNA 3072
chr12-136 | chr12 | 112743198 | 112743400 | + | 13.1 | 0.654 | Intergenic | Intergenic | -19265 | NM_001033248 | 212539 | Mm.81916 | NM_001033248 | ENSMUSG00000010529 | Gm266 | - | predicted gene 266
chr8-166 | chr8 | 108454483 | 108454685 | + | 13.1 | 0.621 | 3' UTR (NM_173432, exon 3 of 3) | 3' UTR (NM_173432, exon 3 of 3) | 3178 | NM_023182 | 109660 | Mm.2745 | NM_023182 | ENSMUSG00000031896 | Ctrl | 0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|FLJ00366|chymopasin|mFLJ00366 | chymotrypsin-like
chrX-21 | chrX | 133275804 | 133276006 | + | 13.1 | 0.704 | promoter-TSS (NM_001168226) | promoter-TSS (NM_001168226) | -14 | NM_001168226 | 56397 | Mm.396341 | NM_001168225 | ENSMUSG00000031422 | Morf4l2 | 2410017O14Rik|Mrgx|Sid393p|mKIAA0026 | mortality factor 4 like 2
chr4-46 | chr4 | 149422022 | 149422224 | + | 13.1 | 0.625 | Intergenic | Intergenic | -20440 | NR_029751 | 723848 |  | NR_029751 |  | Mir34a | Mirn34a|mmu-mir-34a | microRNA 34a
chr7-26 | chr7 | 148748558 | 148748760 | + | 13.1 | 0.85 | intron (NM_007459, intron 1 of 21) | intron (NM_007459, intron 1 of 21) | 580 | NM_007459 | 11772 | Mm.253090 | NM_007459 | ENSMUSG00000002957 | Ap2a2 | 2410074K14Rik|AF006990|AW146353|Adtab|C78001|L25 | adaptor protein complex AP-2, alpha 2 subunit
chr12-96 | chr12 | 18142228 | 18142430 | + | 13.1 | 0.8 | Intergenic | Intergenic | -378987 | NM_001201330 | 236366 | Mm.352227 | NM_001033157 | ENSMUSG00000073197 | 5730507C01Rik | - | RIKEN cDNA 5730507C01 gene
chr4-32 | chr4 | 85050770 | 85050972 | + | 13.1 | 0.81 | Intergenic | Intergenic | 199511 | NM_019535 | 20404 | Mm.143603 | NM_019535 | ENSMUSG00000028488 | Sh3gl2 | 9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a | SH3-domain GRB2-like 2
chr18-20 | chr18 | 83123371 | 83123573 | + | 13.1 | 0.667 | [NAME] (NM_001177464, intron 1 of 5) | [NAME] (NM_001177464, intron 1 of 5) | -33520 | NR_033307 | 75853 | Mm.420737 | NR_033307 |  | 4930592I03Rik | - | RIKEN cDNA 4930592I03 gene
chr8-184 | chr8 | 128142575 | 128142777 | + | 13.1 | 0.615 | Intergenic | Intergenic | 34138 | NR_015535 | 75930 | [NAME] | NR_015535 |  | 4930567H12Rik | 4930579P07Rik | RIKEN cDNA 4930567H12 gene
chr3-14 | chr3 | 88229053 | 88229255 | + | 13.1 | 0.75 | promoter-TSS (NM_178696) | promoter-TSS (NM_178696) | -93 | NM_001145876 | 229517 | Mm.301740 | NM_001145876 | ENSMUSG00000050144 | Slc25a44 | 6720482A19|B430110G05Rik | solute carrier family 25, member 44
chr18-18 | chr18 | 56869499 | 56869701 | + | 13.1 | 0.818 | [NAME], intron 1 of 10) | B3|SINE|B2 | 2133 | NM_010721 | 16906 | Mm.4105 | NM_010721 | ENSMUSG00000024590 | Lmnb1 | - | lamin B1
chr2-19 | chr2 | 166389502 | 166389704 | + | 13.1 | 0.75 | Intergenic | Intergenic | 116652 | NR_015558 | 319684 | Mm.399746 | NR_015558 |  | 5031425F14Rik | - | RIKEN cDNA 5031425F14 gene
chr6-63 | chr6 | 144046698 | 144046900 | + | 13.1 | 0.857 | [NAME] (NM_011444, intron 3 of 14) | [NAME] (NM_011444, intron 3 of 14) | 111289 | NM_001113559 | 20678 | [NAME] | NM_001113559 | ENSMUSG00000041540 | Sox5 | A730017D01Rik|AI528773|MGC124352 | SRY-box containing gene 5
chr11-121 | chr11 | 95393611 | 95393813 | + | 13.1 | 0.577 | Intergenic | MTE2b|LTR|MaLR | -17833 | NM_130858 | 104079 | Mm.22970 | NM_130858 | ENSMUSG00000046719 | Nxph3 | - | neurexophilin 3
chr19-13 | chr19 | 61000545 | 61000747 | + | 13.1 | 0.9 | intron (NM_018869, intron 1 of 15) | GA-rich|Low_complexity|Low_complexity | 34994 | NM_018869 | 14773 | Mm.279400 | NM_018869 | ENSMUSG00000003228 | Grk5 | [NAME] | G protein-coupled receptor kinase 5
chr11-115 | chr11 | 69230984 | 69231186 | + | 13.1 | 0.731 | Intergenic | Intergenic | -3908 | NM_001017426 | 216850 | Mm.472522 | NM_001017426 | ENSMUSG00000018476 | Kdm6b | 1700064E03Rik|BC038313|Jmjd3|KIAA0346|mKIAA0346 | [NAME] lysine (K)-specific demethylase 6B
chr8-170 | chr8 | 110086144 | 110086346 | + | 13.1 | 0.708 | Intergenic | ID_B1|SINE|B4 | 11101 | NR_029553 | 387158 |  | NR_029553 |  | Mir140 | Mirn140|mmu-mir-140 | microRNA 140
chr12-220 | chr12 | 114067915 | 114068117 | + | 12.4 | 0.72 | promoter-TSS (NM_028023) | promoter-TSS (NM_028023) | -416 | NM_028023 | 71963 | Mm.313185 | NM_028023 | ENSMUSG00000047832 | Cdca4 | 2410018C03Rik|HEPP|SEI-3 | cell division cycle associated 4
chr8-251 | chr8 | 122887899 | 122888101 | + | 12.4 | 0.536 | Intergenic | MLT1D|LTR|MaLR | -124766 | NM_198671 | 382034 | [NAME] | NM_001145896 | ENSMUSG00000031822 | Gse1 | 2210013I18Rik|MGC58013|mKIAA0182 | genetic suppressor element 1
chr9-48 | chr9 | 47337747 | 47337949 | + | 12.4 | 0.842 | promoter-TSS (NM_207676) | promoter-TSS (NM_207676) | -587 | NM_207675 | 54725 | Mm.234832 | NM_001025600 | ENSMUSG00000032076 | Cadm1 | 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 | cell adhesion molecule 1
chr8-241 | chr8 | 110321796 | 110321998 | + | 12.4 | 0.696 | Intergenic | B4|SINE|B4 | -209515 | NM_010817 | 17463 | Mm.18347 | NM_010817 | ENSMUSG00000039067 | Psmd7 | AW107203|Mov-34|Mov34 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
chr8-222 | chr8 | 89786041 | 89786243 | + | 12.4 | 0.75 | Intergenic | Intergenic | -62393 | [NAME] | 100038706 | Mm.334690 | [NAME] |  | Gm10637 | ENSMUSG00000074176 | predicted gene 10637
chr11-130 | chr11 | 61890117 | 61890319 | + | 12.4 | 0.889 | promoter-TSS (NM_001029936) | promoter-TSS (NM_001029936) | -381 | NM_001029936 | 432572 | Mm.459461 | NM_001029936 | ENSMUSG00000042331 | Specc1 | 2810012G08Rik|B230396K10Rik|Cytsb|KIAA4061|mKIAA4061 | sperm antigen with calponin homology and coiled-coil domains 1
chr12-149 | chr12 | 70472545 | 70472747 | + | 12.4 | 0.895 | promoter-TSS (NM_007481) | promoter-TSS (NM_007481) | -491 | NM_007481 | 11845 | Mm.27308 | NM_007481 | ENSMUSG00000044147 | Arf6 | AI788669|AW496366|MGC102530 | ADP-ribosylation factor 6
chr17-62 | chr17 | 30929398 | 30929600 | + | 12.4 | 0.8 | [NAME] (NM_013811, intron 75 of 92) | B4|SINE|B4 | -109313 | NM_021332 | 14652 | Mm.390969 | NM_021332 | ENSMUSG00000024027 | Glp1r | GLP-1R|GLP1Rc | glucagon-like peptide 1 receptor
chr10-23 | chr10 | 77632709 | 77632911 | + | 12.4 | 0.727 | promoter-TSS (NM_138601) | promoter-TSS (NM_138601) | -297 | NM_138601 | 28295 | Mm.268691 | NM_138601 | ENSMUSG00000053329 | D10Jhu81e | C21orf33|ES1 | DNA segment, Chr 10, Johns Hopkins University 81 expressed
chr14-29 | chr14 | 44055555 | 44055757 | + | 12.4 | 0.783 | Intergenic | Lx3A|LINE|L1 | -29312 | NM_027940 | 71826 | Mm.335855 | NM_027940 | ENSMUSG00000072603 | 1700001F09Rik | Gm10377|MGC107255 | RIKEN cDNA 1700001F09 gene
chr8-215 | chr8 | 86590384 | 86590586 | + | 12.4 | 0.667 | promoter-TSS (NM_009055) | promoter-TSS (NM_009055) | -250 | NM_009055 | 19724 | Mm.7892 | NM_009055 | ENSMUSG00000031706 | Rfx1 | AI047719|AI385641 | regulatory factor X, 1 (influences HLA class II expression)
chr12-158 | chr12 | 88366241 | 88366443 | + | 12.4 | 0.818 | Intergenic | Intergenic | -1172 | NM_172583 | 217733 | Mm.110032 | NM_172583 | ENSMUSG00000034145 | [NAME] | 4932420N09|9330187M14Rik | [NAME] 63c
chr9-51 | chr9 | 103904591 | 103904793 | + | 12.4 | 0.762 | promoter-TSS (NM_172460) | promoter-TSS (NM_172460) | -182 | NM_172460 | 74025 | Mm.479273 | NM_028721 | ENSMUSG00000032558 | Nphp3 | 3632410F03Rik|AI550417|C230078J01|D330020E01Rik|MGC141550|pcy | nephronophthisis 3 (adolescent)
chr12-159 | chr12 | 88439267 | 88439469 | + | 12.4 | 0.652 | exon (NM_022414, exon 4 of 4) | exon (NM_022414, exon 4 of 4) | 4121 | NM_022414 | 64242 | Mm.41395 | NM_022414 | ENSMUSG00000021032 | Ngb | - | [NAME]
chr5-34 | chr5 | 122512170 | 122512372 | + | 12.4 | 0.696 | Intergenic | Intergenic | -14437 | NM_007804 | 13048 | Mm.332661 | NM_007804 | ENSMUSG00000042589 | Cux2 | 1700051K22Rik|Cutl2|Cux-2|ENSMUSG00000072641 | cut-like homeobox 2
chr17-50 | chr17 | 23735738 | 23735940 | + | 12.4 | 0.81 | [NAME] 1 of 5) | [NAME] 1 of 5) | 615 | NM_011747 | 22654 | Mm.40326 | NM_011747 | ENSMUSG00000062012 | Zfp13 | 4933429B21|AI835008|Krox-8|Rhit|Zfp-13 | zinc finger protein 13
chr2-21 | chr2 | 35080882 | 35081084 | + | 12.4 | 0.905 | Intergenic | ORR1D2|LTR|MaLR | -24343 | NM_026697 | 68365 | Mm.198264 | NM_026697 | ENSMUSG00000026878 | Rab14 | 0610030G24Rik|2810475J17Rik|A830021G03Rik|AI314285|AI649155|D030017L14Rik | RAB14, member RAS oncogene family
chr4-57 | chr4 | 104708830 | 104709032 | + | 12.4 | 0.714 | exon (NM_178143, exon 9 of 9) | exon (NM_178143, exon 9 of 9) | 73572 | NM_178143 | 108079 | Mm.48638 | NM_178143 | ENSMUSG00000028518 | Prkaa2 | 2310008I11Rik|A830082D05|AMPKalpha2 | [NAME], AMP-activated, alpha 2 catalytic subunit
chr4-72 | chr4 | 134863425 | 134863627 | + | 12.4 | 0.696 | Intergenic | Intergenic | -34851 | NM_013885 | 29876 | Mm.257765 | NM_013885 | ENSMUSG00000037242 | Clic4 | D0Jmb3|TU-74|mc3s5|mtCLIC | chloride intracellular channel 4 (mitochondrial)
chr5-37 | chr5 | 123622067 | 123622269 | + | 12.4 | 0.818 | [NAME] (NM_008277, intron 13 of 13) | [NAME] (NM_008277, intron 13 of 13) | 10527 | NM_008277 | 15445 | Mm.439709 | NM_008277 | ENSMUSG00000029445 | Hpd | Fla|Flp|Hppd|Laf | 4-hydroxyphenylpyruvic acid dioxygenase
chr8-245 | chr8 | 117960496 | 117960698 | + | 12.4 | 0.85 | Intergenic | Intergenic | 270197 | NM_001025577 | 17132 | Mm.488377 | NM_001025577 | ENSMUSG00000055435 | Maf | 2810401A20Rik|A230108G15Rik|AW047063|c-maf | avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
chr8-203 | chr8 | 26311064 | 26311266 | + | 12.4 | 0.789 | [NAME] 12) | [NAME] 12) | 756 | NM_199323 | 320165 | Mm.308452 | NM_177089 | ENSMUSG00000065954 | [NAME] | 4833447E04Rik|AA960202|B230378H13Rik | transforming, acidic coiled-coil containing protein 1
chr17-67 | chr17 | 88222440 | 88222642 | + | 12.4 | 0.8 | Intergenic | B4|SINE|B4 | -25207 | [NAME] | 210741 | Mm.312046 | [NAME] | [NAME] | [NAME] | mntk1 | potassium channel, subfamily K, member 12
chr12-187 | chr12 | 108473046 | 108473248 | + | 12.4 | 0.727 | Intergenic | Intergenic | 500551 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr16-20 | chr16 | 18234450 | 18234652 | + | 12.4 | 0.81 | [NAME] intron 1 of 10) | [NAME] intron 1 of 10) | 678 | NM_172151 | 27801 | Mm.326263 | NM_172151 | ENSMUSG00000060166 | Zdhhc8 | D16H22S1738E|DHHC-8|E330009O14Rik|MGC103030|MGC118171|MGC7847|Op53c05|ZDHHCL1 | zinc finger, DHHC domain containing 8
chr19-20 | chr19 | 44368401 | 44368603 | + | 12.4 | 0.792 | 5' UTR (NM_009128, exon 1 of 6) | 5' UTR (NM_009128, exon 1 of 6) | 336 | NM_009128 | 20250 | [NAME] | NM_009128 | ENSMUSG00000025203 | Scd2 | Scd-2|swty | stearoyl-Coenzyme A desaturase 2
chr8-219 | chr8 | 87312620 | 87312822 | + | 12.4 | 0.783 | intron (NM_010906, intron 1 of 8) | intron (NM_010906, intron 1 of 8) | 11518 | NM_010906 | 18032 | Mm.9394 | NM_001081981 | ENSMUSG00000001911 | Nfix | - | nuclear factor I/X
chr15-21 | chr15 | 98622325 | 98622527 | + | 12.4 | 0.842 | intron (NM_021279, intron 3 of 3) | CpG-5313 | 2138 | NM_021279 | 22408 | Mm.1123 | NM_021279 | ENSMUSG00000022997 | Wnt1 | Int-1|Wnt-1|sw|swaying | wingless-related MMTV integration site 1
chr15-17 | chr15 | 78236387 | 78236589 | + | 12.4 | 0.762 | promoter-TSS (NM_001162492) | promoter-TSS (NM_001162492) | -199 | NM_009437 | 22117 | Mm.15312 | NM_009437 | ENSMUSG00000044986 | Tst | Rhodanese | [NAME], mitochondrial
chr10-29 | chr10 | 126501411 | 126501613 | + | 12.4 | 0.643 | intron (NM_009870, intron 2 of 7) | intron (NM_009870, intron 2 of 7) | 853 | NM_009870 | 12567 | Mm.6839 | NM_009870 | ENSMUSG00000006728 | Cdk4 | Crk3 | cyclin-dependent kinase 4
chr8-237 | chr8 | 108689669 | 108689871 | + | 12.4 | 0.6 | Intergenic | Intergenic | -3005 | NM_178798 | 330836 | Mm.46749 | NM_178798 | ENSMUSG00000031904 | Slc7a6 | AI643885|LAT-2|LAT3 | solute carrier family 7 (cationic amino acid transporter, y+ system), member 6
chr11-129 | chr11 | 51462056 | 51462258 | + | 12.4 | 0.75 | [NAME] (NM_145974, intron 1 of 4) | [NAME] (NM_145974, intron 1 of 4) | -2299 | NR_027958 | 97775 | Mm.220299 | NM_175289 |  | D930048N14Rik | AI315703|R75254 | RIKEN cDNA D930048N14 gene
chr4-69 | chr4 | 122703974 | 122704176 | + | 12.4 | 0.8 | [NAME] (NM_025873, intron 1 of 10) | [NAME] (NM_025873, intron 1 of 10) | 10235 | NM_025873 | 66966 | Mm.235030 | NM_025873 | ENSMUSG00000028653 | Trit1 | 2310075G14Rik|AI314189|AI314635|AV099619|IPT|MOD5 | tRNA isopentenyltransferase 1
[NAME] | chr11 | 96227729 | 96227931 | + | 12.4 | 0.8 | intron (NM_008266, intron 1 of 1) | intron (NM_008266, intron 1 of 1) | 758 | NM_008266 | 15407 | Mm.890 | NM_008266 | ENSMUSG00000018973 | Hoxb1 | Hox-2.9|MGC124123 | homeobox B1
chr19-16 | chr19 | 7132302 | 7132504 | + | 12.4 | 0.696 | [NAME] 1 of 10) | [NAME] 1 of 10) | 1145 | [NAME] | 107227 | Mm.439977 | [NAME] | ENSMUSG00000036278 | Macrod1 | AI604841|AW743046|D930010J01Rik|Lrp16 | MACRO domain containing 1
chr7-27 | chr7 | 3330668 | 3330870 | + | 12.4 | 0.737 | 3' UTR (NM_011102, exon 18 of 18) | 3' UTR (NM_011102, exon 18 of 18) | -5916 | NM_133189 | 81904 | Mm.214994 | NM_133189 | ENSMUSG00000069806 | Cacng7 | - | calcium channel, voltage-dependent, gamma subunit 7
chr11-141 | chr11 | 101489538 | 101489740 | + | 12.4 | 0.789 | exon (NM_025654, exon 2 of 7) | exon (NM_025654, exon 2 of 7) | 376 | NM_025654 | 66599 | Mm.41449 | NM_025654 | ENSMUSG00000010362 | Rdm1 | 2410008M22Rik|AW212028|Rad52b | RAD52 motif 1
chr6-76 | chr6 | 135086358 | 135086560 | + | 12.4 | 0.778 | Intergenic | Intergenic | -18158 | NM_001205396 | 93746 | Mm.49902 | NM_001205396 | ENSMUSG00000030205 | Gprc5d | - | G protein-coupled receptor, family C, group 5, member D
chr8-229 | chr8 | 97344560 | 97344762 | + | 12.4 | 0.818 | 3' UTR (NM_134141, exon 9 of 9) | 3' UTR (NM_134141, exon 9 of 9) | 10308 | NM_011332 | 20295 | Mm.41988 | NM_011332 | ENSMUSG00000031780 | Ccl17 | Abcd-2|Scya17|Scya17l|Tarc | chemokine (C-C motif) ligand 17
chr8-204 | chr8 | 27100561 | 27100763 | + | 12.4 | 0.762 | intron (NM_029037, intron 1 of 4) | intron (NM_029037, intron 1 of 4) | 3931 | NM_029037 | 74653 | Mm.17631 | NM_029037 | ENSMUSG00000037251 | 4930444A02Rik | Sgk196 | RIKEN cDNA 4930444A02 gene
chr17-49 | chr17 | 23683659 | 23683861 | + | 12.4 | 0.583 | Intergenic | CpG | 17433 | NM_001033496 | 449521 | Mm.268582 | NM_001033496 | ENSMUSG00000071256 | Zfp213 | BC038178|D17Ertd197e | zinc finger protein 213
chr19-17 | chr19 | 43546906 | 43547108 | + | 12.4 | 0.714 | [NAME] (NM_031396, intron 6 of 10) | [NAME] (NM_031396, intron 6 of 10) | 32081 | NM_031396 | 83674 | Mm.329864 | NM_031396 | ENSMUSG00000025189 | Cnnm1 | AI846314|Acdp1|CLP-1 | cyclin M1
chr7-32 | chr7 | 29232256 | 29232458 | + | 12.4 | 0.826 | TTS (NM_022024) | TTS (NM_022024) | -4647 | NM_030562 | 80749 | Mm.483073 | NM_001141921 | ENSMUSG00000030600 | [NAME] | BC004018|MGC7599|SALM2|Semo1 | leucine rich repeat and fibronectin type III domain containing 1
chr15-24 | chr15 | 100287879 | 100288081 | + | 12.4 | 0.842 | Intergenic | Intergenic | -11485 | NM_134093 | 68614 | [NAME] | NM_134093 | ENSMUSG00000037353 | Letmd1 | 1110019O13Rik|AI593524|BB130465|BB235638|HCCR-2|HCCR1|MCC-32|Mccr | LETM1 domain containing 1
chr8-226 | chr8 | 92708957 | 92709159 | + | 12.4 | 0.789 | Intergenic | Intergenic | 163093 | NM_172913 | 244579 | Mm.302755 | NM_172913 | ENSMUSG00000043668 | Tox3 | 500-9|BC052044|C230068E13|CAGF9|Tnrc9 | TOX high mobility group box family member 3
chr17-66 | chr17 | 46169739 | 46169941 | + | 12.4 | 0.652 | promoter-TSS (NM_009505) | promoter-TSS (NM_009505) | -514 | NM_001025257 | 22339 | Mm.282184 | NM_001025250 | ENSMUSG00000023951 | Vegfa | Vegf|Vegf120|Vegf164|Vegf188|Vpf | vascular endothelial growth factor A
chr8-192 | chr8 | 13889561 | 13889763 | + | 12.4 | 0.842 | [NAME] (NM_025556, intron 1 of 3) | [NAME] (NM_025556, intron 1 of 3) | 609 | NM_025556 | 66423 | Mm.29063 | NM_025556 | ENSMUSG00000031458 | 2410022L05Rik | 1700029I03Rik|AA409325|AI256813|C85432|Copr5|MGC11316 | RIKEN cDNA 2410022L05 gene
chr12-178 | chr12 | 105852090 | 105852292 | + | 12.4 | 0.593 | Intergenic | Intergenic | 137971 | NM_148948 | 192119 | Mm.21135 | NM_148948 | ENSMUSG00000041415 | Dicer1 | 1110006F08Rik|D12Ertd7e|mKIAA0928 | dicer 1, ribonuclease type III
chr10-26 | chr10 | 80783746 | 80783948 | + | 12.4 | 0.85 | promoter-TSS (NM_027381) | promoter-TSS (NM_027381) | -1 | NM_027381 | 70312 | Mm.87628 | NM_027381 | ENSMUSG00000034889 | 2510012J08Rik | - | RIKEN cDNA 2510012J08 gene
chr4-53 | chr4 | 82158748 | 82158950 | + | 12.4 | 0.8 | Intergenic | (TG)n|Simple_repeat|Simple_repeat | -7637 | NM_008687 | 18028 | Mm.317947 | NM_001113209 | ENSMUSG00000008575 | Nfib | 6720429L07Rik|E030026I10Rik | nuclear factor I/B
chr12-190 | chr12 | 109397149 | 109397351 | + | 12.4 | 0.696 | intron (NM_028262, intron 4 of 12) | MLT1A0|LTR|MaLR | 20244 | NM_028262 | 52690 | Mm.159185 | NM_028262 | ENSMUSG00000056770 | Setd3 | 2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e | SET domain containing 3
chr16-24 | chr16 | 96348493 | 96348695 | + | 12.4 | 0.773 | intron (NM_008251, intron 4 of 5) | B3|SINE|B2 | 738 | NM_008251 | 15312 | Mm.2756 | NM_008251 | ENSMUSG00000040681 | Hmgn1 | HMG-14|Hmg14|MGC103397 | high mobility group nucleosomal binding domain 1
chr10-30 | chr10 | 126603415 | 126603617 | + | 12.4 | 0.696 | [NAME] (NR_045166, intron 2 of 9) | [NAME] (NR_045166, intron 2 of 9) | 629 | NM_001244618 | 14421 | Mm.386762 | NM_001244617 | ENSMUSG00000006731 | B4galnt1 | 4933429D13Rik|Gal-NAc-T|GalNAc-T|GalNAcT|Galgt1|Ggm-2|Ggm2 | beta-1,4-N-acetyl-galactosaminyl transferase 1
chr8-211 | chr8 | 73154456 | 73154658 | + | 12.4 | 0.654 | [NAME] (NM_011819, intron 1 of 1) | PB1D7|SINE|Alu | 977 | NM_011819 | 23886 | Mm.31325 | NM_011819 | ENSMUSG00000038508 | Gdf15 | MIC-1|NAG-1|SBF | growth differentiation factor 15
chr9-50 | chr9 | 72942434 | 72942636 | + | 12.4 | 0.7 | intron (NM_023635, intron 5 of 5) | intron (NM_023635, intron 5 of 5) | -7670 | NM_025890 | 66991 | Mm.489772 | NM_025890 | [NAME] | 2410004A20Rik | AI467128|FILIA|OEEP48 | RIKEN cDNA 2410004A20 gene
chr12-156 | chr12 | 88226373 | 88226575 | + | 12.4 | 0.76 | promoter-TSS (NM_145836) | promoter-TSS (NM_145836) | -710 | NM_145836 | 238330 | Mm.248358 | NM_145836 | ENSMUSG00000034168 | 6430527G18Rik | Eap1|Irf2bpl | RIKEN cDNA 6430527G18 gene
chr12-163 | chr12 | 91222038 | 91222240 | + | 12.4 | 0.857 | [NAME] (NM_172544, intron 15 of 19) | [NAME] (NM_172544, intron 15 of 19) | 171243 | NM_001252074 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr11-133 | chr11 | 78172054 | 78172256 | + | 12.4 | 0.72 | 3' UTR (NM_008238, exon 9 of 9) | 3' UTR (NM_008238, exon 9 of 9) | 15131 | NM_011676 | 22248 | Mm.284811 | NM_011676 | ENSMUSG00000002058 | Unc119 | D11Bhm52|HRG4|MRG4|Rg4|Rtg4|Unc119h | unc-119 homolog (C. elegans)
chr8-236 | chr8 | 108370184 | 108370386 | + | 12.4 | 0.833 | exon (NM_177150, exon 10 of 13) | exon (NM_177150, exon 10 of 13) | 5623 | NM_177150 | 320394 | Mm.334775 | NM_177150 | ENSMUSG00000036672 | Cenpt | G630055P03Rik | centromere protein T
chr11-145 | chr11 | 116477734 | 116477936 | + | 12.4 | 0.625 | [NAME] (NM_172572, intron 1 of 18) | [NAME] (NM_172572, intron 1 of 18) | 7731 | NM_001167680 | 217344 | Mm.89695 | NM_001167680 | ENSMUSG00000020806 | Rhbdf2 | 4732465I17Rik|Rhbdl6 | rhomboid 5 homolog 2 (Drosophila)
chr16-19 | chr16 | 5254712 | 5254914 | + | 12.4 | 0.708 | [NAME] (NM_027446, intron 1 of 7) | [NAME] (NM_027446, intron 1 of 7) | 1236 | NM_027446 | 70511 | Mm.45780 | NM_027446 | ENSMUSG00000022544 | Fam86 | 5730409G15Rik|Fam86a | family with sequence similarity 86
chr13-32 | chr13 | 55291461 | 55291663 | + | 12.4 | 0.789 | Intergenic | Intergenic | -19581 | NM_008739 | 18193 | Mm.168965 | NM_008739 | ENSMUSG00000021488 | Nsd1 | AI528500|KMT3B | nuclear receptor-binding SET-domain protein 1
chr8-242 | chr8 | 113586387 | 113586589 | + | 12.4 | 0.792 | Intergenic | tRNA-Gly-GGY|tRNA|tRNA | 6249 | NM_028274 | 72544 | Mm.334810 | NM_028274 |  | Exosc6 | 2610510N21Rik|C76919|MGC151362|Mtr3 | exosome component 6
chr3-20 | chr3 | 137654620 | 137654822 | + | 12.4 | 0.895 | Intergenic | B1_Mus1|SINE|Alu | -10208 | NM_011932 | 26377 | Mm.470427 | NM_011932 | ENSMUSG00000028159 | Dapp1 | Bam32 | dual adaptor for phosphotyrosine and 3-phosphoinositides 1
chr9-49 | chr9 | 62989589 | 62989791 | + | 12.4 | 0.85 | [NAME] (NM_001163755, intron 4 of 8) | [NAME] (NM_001163755, intron 4 of 8) | 5097 | NM_172446 | 207667 | Mm.447200 | NM_001163755 | ENSMUSG00000022245 | Skor1 | AV273001|C230094B15Rik|Corl1|Lbxcor1 | SKI family transcriptional corepressor 1
chr1-83 | chr1 | 108650044 | 108650246 | + | 12.4 | 0.944 | [NAME] (NM_027534, intron 2 of 9) | [NAME] (NM_027534, intron 2 of 9) | 6174 | NM_027534 | 70750 | Mm.458911 | NM_027534 | ENSMUSG00000009905 | Kdsr | 6330410P18Rik|9430079B08Rik|Fvt1 | 3-ketodihydrosphingosine reductase
chr8-190 | chr8 | 12902210 | 12902412 | + | 12.4 | 0.696 | Intergenic | Intergenic | -13582 | NM_178076 | 17207 | Mm.334413 | NM_001159485 | ENSMUSG00000031442 | Mcf2l | C130040G20Rik|Dbs|Ost|mKIAA0362 | [NAME] transforming sequence-like
chr19-21 | chr19 | 46412635 | 46412837 | + | 12.4 | 0.65 | [NAME] (NM_001164293, intron 1 of 8) | [NAME] (NM_001164293, intron 1 of 8) | 414 | NM_001164294 | 67116 | Mm.218848 | NM_001164290 | ENSMUSG00000036748 | Cuedc2 | 3010002G01Rik | CUE domain containing 2
chr17-64 | chr17 | 34700998 | 34701200 | + | 12.4 | 0.714 | promoter-TSS (NM_010929) | promoter-TSS (NM_010929) | -141 | NM_010929 | 18132 | Mm.173813 | NM_010929 | ENSMUSG00000015468 | Notch4 | [NAME] | Notch gene homolog 4 (Drosophila)
chr8-217 | chr8 | 86881103 | 86881305 | + | 12.4 | 0.667 | Intergenic | Intergenic | -58059 | NM_001252060 | 12286 | Mm.334658 | NM_001252059 | ENSMUSG00000034656 | Cacna1a | APCA|Caca1a|Cacnl1a4|Cav2.1|Ccha1a|EA2|FHM|HPCA|MHP|MHP1|SCA6|alpha1A|la|leaner|nmf352|rkr|rocker|tg|tottering | calcium channel, voltage-dependent, P/Q type, alpha 1A subunit
chr8-271 | chr8 | 128479581 | 128479783 | + | 12.4 | 0.633 | Intergenic | Intergenic | -39320 | NM_008430 | 16525 | Mm.10800 | NM_008430 | ENSMUSG00000033998 | Kcnk1 | AI788889|TWIK-1 | potassium channel, subfamily K, member 1
chr16-21 | chr16 | 30540444 | 30540646 | + | 12.4 | 0.783 | [NAME], intron 6 of 9) | [NAME], intron 6 of 9) | 10119 | NM_172614 | 224090 | Mm.241459 | NM_172614 | ENSMUSG00000022537 | Tmem44 | 1700007N03Rik|9330161C17Rik|B230220N21 | [NAME] 44
chr12-186 | chr12 | 108152789 | 108152991 | + | 12.4 | 0.8 | Intergenic | L1_Mus3|LINE|L1 | -198356 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr2-22 | chr2 | 74518642 | 74518844 | + | 12.4 | 0.85 | Intergenic | Intergenic | -1707 | NM_008273 | 15431 | Mm.207763 | NM_008273 | ENSMUSG00000042499 | Hoxd11 | E230017H14Rik|Hox-4.6|Hox-5.4|Hox-5.5 | homeobox D11
chr15-16 | chr15 | 75835573 | 75835775 | + | 12.4 | 0.615 | exon (NM_134087, exon 3 of 5) | exon (NM_134087, exon 3 of 5) | 4254 | NM_001168253 | 105732 | Mm.267178 | NM_001168253 | ENSMUSG00000046761 | Fam83h | AA409316 | family with sequence similarity 83, member H
chr8-249 | chr8 | 122756768 | 122756970 | + | 12.4 | 0.682 | Intergenic | Intergenic | -55500 | NM_001033980 | 436062 | Mm.334852 | NM_001033980 | ENSMUSG00000042269 | Fam92b | 1700120B06Rik | family with sequence similarity 92, member B
chr16-22 | chr16 | 32762571 | 32762773 | + | 12.4 | 0.842 | [NAME] (NM_080457, intron 9 of 26) | [NAME] (NM_080457, intron 9 of 26) | 26700 | NM_080457 | 140474 | Mm.214599 | NM_080457 | ENSMUSG00000079620 | Muc4 | 4933405I11Rik|Asgp | mucin 4
chr7-31 | chr7 | 27981204 | 27981406 | + | 12.4 | 0.783 | promoter-TSS (NM_001046637) | promoter-TSS (NM_001046637) | -15 | NM_015782 | 53607 | Mm.386890 | NM_001046637 | ENSMUSG00000061479 | Snrpa | C430021M15Rik|Rnu1a-1|Rnu1a1|U1A | small nuclear ribonucleoprotein polypeptide A
chr8-224 | chr8 | 90178836 | 90179038 | + | 12.4 | 0.591 | Intergenic | Intergenic | 91131 | NM_177901 | 330820 | Mm.212913 | NM_177901 | ENSMUSG00000069971 | 4933402J07Rik | - | RIKEN cDNA 4933402J07 gene
[NAME] | chr11 | 6526256 | 6526458 | + | 12.4 | 0.864 | promoter-TSS (NM_134011) | promoter-TSS (NM_134011) | -287 | NM_134011 | 21379 | Mm.247761 | XM_003689255 | ENSMUSG00000000384 | Tbrg4 | 2310042P22Rik|AA120735|AA408001|AI527316|Cpr2|R74877|Tb-12|mKIAA0948 | transforming growth factor beta regulated gene 4
chr5-38 | chr5 | 130371450 | 130371652 | + | 12.4 | 0.789 | promoter-TSS (NM_183088) | promoter-TSS (NM_183088) | -42 | NM_183088 | 71970 | Mm.422716 | NM_183088 | ENSMUSG00000034173 | 2410018M08Rik | Scand3 | RIKEN cDNA 2410018M08 gene
chr8-202 | chr8 | 24088359 | 24088561 | + | 12.4 | 0.81 | [NAME] (NM_001110783, intron 1 of 43) | [NAME] (NM_001110783, intron 1 of 43) | 3106 | NM_001110783 | 11733 | Mm.334444 | NM_001110783 | ENSMUSG00000031543 | Ank1 | Ank-1|nb|pale | ankyrin 1, erythroid
chr12-194 | chr12 | 109559134 | 109559336 | + | 12.4 | 0.76 | [NAME] (NM_001044380, intron 6 of 8) | [NAME] (NM_001044380, intron 6 of 8) | -13356 | NM_010010 | 13116 | Mm.41911 | NM_010010 | ENSMUSG00000021259 | Cyp46a1 | Cyp46 | cytochrome P450, family 46, subfamily a, polypeptide 1
chr12-170 | chr12 | 103588892 | 103589094 | + | 12.4 | 0.783 | [NAME] (NM_177620, intron 3 of 9) | [NAME] (NM_177620, intron 3 of 9) | 67142 | NM_001161365 | 217835 | Mm.24145 | NM_001161365 | ENSMUSG00000044456 | Rin3 | 6430500K07|C86933 | [NAME] and Rab interactor 3
chr6-77 | chr6 | 137610574 | 137610776 | + | 12.4 | 0.842 | Intergenic | Intergenic | -13034 | NM_007945 | 13860 | Mm.235346 | NM_007945 | ENSMUSG00000015766 | Eps8 | AW261790 | epidermal growth factor receptor pathway substrate 8
chr14-32 | chr14 | 99541596 | 99541798 | + | 12.4 | 0.667 | intron (NM_029320, intron 9 of 17) | intron (NM_029320, intron 9 of 17) | -42708 | NM_028315 | 72662 | Mm.163339 | NM_028315 | ENSMUSG00000033166 | Dis3 | 2810028N01Rik | DIS3 mitotic control homolog (S. cerevisiae)
chr8-227 | chr8 | 96729733 | 96729935 | + | 12.4 | 0.81 | Intergenic | Intergenic | -8667 | NM_172410 | 71805 | Mm.458170 | NM_172410 | ENSMUSG00000032939 | Nup93 | 2410008G02Rik | nucleoporin 93
chr1-90 | chr1 | 183228330 | 183228532 | + | 12.4 | 0.7 | Intergenic | Intergenic | -54328 | NM_028408 | 72978 | Mm.338083 | NM_001160211 | ENSMUSG00000026514 | Cnih3 | 2900075G08Rik | cornichon homolog 3 (Drosophila)
chr8-207 | chr8 | 28390775 | 28390977 | + | 12.4 | 0.895 | Intergenic | Intergenic | -15641 | NR_003107 | 732482 | Mm.463248 | NR_003107 |  | Gm9731 | - | Fam58a pseudogene
chr11-140 | chr11 | 97486224 | 97486426 | + | 12.4 | 0.696 | Intergenic | Intergenic | 4705 | NM_175332 | 103551 | Mm.24506 | NM_175332 | ENSMUSG00000043439 | E130012A19Rik | AA409164|AI413509|AW539173|esPRC2p48 | RIKEN cDNA E130012A19 gene
chr12-182 | chr12 | 106761564 | 106761766 | + | 12.4 | 0.625 | Intergenic | Intergenic | -39717 | NM_009747 | 12062 | Mm.390475 | NM_009747 | ENSMUSG00000021070 | Bdkrb2 | B(2)|B2|B2R|BK-2|BK2|BK2R|BKR2|BRB2 | bradykinin receptor, beta 2
chr11-128 | chr11 | 23566348 | 23566550 | + | 12.4 | 0.739 | promoter-TSS (NM_023651) | promoter-TSS (NM_023651) | 473 | NM_028304 | 74467 | Mm.29536 | NM_001033654 | ENSMUSG00000020280 | Pus10 | 2810013G11Rik|4933435A13Rik|AU014648|C77560|Ccdc139 | pseudouridylate synthase 10
chr19-15 | chr19 | 4615981 | 4616183 | + | 12.4 | 0.75 | promoter-TSS (NM_153388) | promoter-TSS (NM_153388) | -415 | NM_153388 | 225875 | Mm.329675 | NM_153388 | ENSMUSG00000045045 | Lrfn4 | BC023156|MGC36464|MGC36545|Salm3 | leucine rich repeat and fibronectin type III domain containing 4
chr8-186 | chr8 | 9977162 | 9977364 | + | 12.4 | 0.714 | promoter-TSS (NM_176953) | promoter-TSS (NM_176953) | -454 | NM_001081119 | 68904 | Mm.395885 | NM_001081119 | ENSMUSG00000040396 | Abhd13 | 1110065L07Rik|AI463703|AI788994 | abhydrolase domain containing 13
chr12-175 | chr12 | 105709177 | 105709379 | + | 12.4 | 0.727 | TTS (NM_010351) | TTS (NM_010351) | 2168 | NM_010351 | 14836 | Mm.129 | NM_010351 | ENSMUSG00000021095 | [NAME] | - | [NAME]
chr4-54 | chr4 | 97054520 | 97054722 | + | 12.4 | 0.727 | Intergenic | Intergenic | -194013 | NM_001122952 | 18027 | Mm.409646 | NM_001122952 | ENSMUSG00000028565 | Nfia | 1110047K16Rik|9430022M17Rik|NF1-A|NF1A | nuclear factor I/A
chr15-19 | chr15 | 81799644 | 81799846 | + | 12.4 | 0.81 | Intergenic | RLTRETN_Mm|LTR|ERVK | -8448 | NM_013872 | 29858 | Mm.18939 | NM_013872 | ENSMUSG00000022474 | Pmm1 | C77612 | phosphomannomutase 1
chr1-88 | chr1 | 174455466 | 174455668 | + | 12.4 | 0.789 | intron (NM_027972, intron 1 of 11) | intron (NM_027972, intron 1 of 11) | 4306 | NM_027972 | 71870 | Mm.78373 | NM_027972 | ENSMUSG00000026546 | Ccdc19 | 1700028D05Rik|Nesg1 | coiled-coil domain containing 19
chr8-194 | chr8 | 18898875 | 18899077 | + | 12.4 | 0.727 | Intergenic | Intergenic | 51997 | NM_176951 | 319581 | Mm.111354 | NM_001113350 | ENSMUSG00000039814 | Xkr5 | 5430438H03Rik|XRG5 | X [NAME] blood group precursor-related family, member 5
chr10-24 | chr10 | 79896653 | 79896855 | + | 12.4 | 0.636 | promoter-TSS (NM_001164149) | promoter-TSS (NM_001164149) | -356 | NM_001164148 | 21423 | Mm.3406 | NM_001164147 | ENSMUSG00000020167 | Tcf3 | A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|ME2|Pan1|Pan2|Tcfe2a|VDIR|bHLHb21 | transcription factor 3
chr14-28 | chr14 | 32081943 | 32082145 | + | 12.4 | 0.654 | exon (NM_001033668, exon 60 of 78) | exon (NM_001033668, exon 60 of 78) | 17369 | NM_027088 | 104416 | Mm.3779 | NM_027088 | ENSMUSG00000021901 | Bap1 | 2300006C11Rik|AA989761|AW553466|mKIAA0272|uch-x4 | [NAME] associated protein 1
chr8-246 | chr8 | 118843424 | 118843626 | + | 12.4 | 0.783 | Intergenic | B3|SINE|B2 | -185390 | NM_029297 | 75465 | Mm.23114 | NM_029297 | ENSMUSG00000034467 | Dynlrb2 | 1700009A04Rik|DNLC2B|Dncl2b | [NAME] chain roadblock-type 2
chr10-27 | chr10 | 92947204 | 92947406 | + | 12.4 | 0.667 | [NAME], intron 18 of 18) | [NAME], intron 18 of 18) | -4208 | NM_010401 | 15109 | Mm.13000 | NM_010401 | ENSMUSG00000020017 | Hal | Hsd|his|histidase | histidine ammonia lyase
chr4-68 | chr4 | 119628801 | 119629003 | + | 12.4 | 0.857 | [NAME] (NM_010657, intron 1 of 8) | [NAME] (NM_010657, intron 1 of 8) | 141619 | NM_010657 | 16656 | Mm.488325 | NM_010657 | ENSMUSG00000028634 | Hivep3 | 2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3 | human immunodeficiency virus type I enhancer binding protein 3
chr8-223 | chr8 | 90173538 | 90173740 | + | 12.4 | 0.722 | Intergenic | Intergenic | 85833 | NM_177901 | 330820 | Mm.212913 | NM_177901 | ENSMUSG00000069971 | 4933402J07Rik | - | RIKEN cDNA 4933402J07 gene
chr12-150 | chr12 | 80908592 | 80908794 | + | 12.4 | 0.864 | intron (NM_009014, intron 10 of 10) | intron (NM_009014, intron 10 of 10) | 305307 | NM_007564 | 12192 | Mm.235132 | NM_007564 | ENSMUSG00000021127 | Zfp36l1 | AW742437|AW743212|Berg36|Brf1|D530020L18Rik|ERF1|TIS11b|cMG1 | zinc finger protein 36, C3H type-like 1
chr8-208 | chr8 | 42324662 | 42324864 | + | 12.4 | 0.85 | promoter-TSS (NM_023662) | promoter-TSS (NM_023662) | -350 | NM_023662 | 18536 | Mm.117896 | NM_023662 | ENSMUSG00000031592 | Pcm1 | 2600002H09Rik|9430077F19Rik|C030044G17Rik|MGC170660 | pericentriolar material 1
chr1-74 | chr1 | 20750010 | 20750212 | + | 12.4 | 0.737 | Intergenic | Intergenic | 24240 | [NAME] | 257630 | Mm.222807 | [NAME] | ENSMUSG00000041872 | Il17f | C87042|IL-17F | interleukin 17F
chr11-149 | chr11 | 120644477 | 120644679 | + | 12.4 | 0.75 | [NAME] (NM_009053, intron 3 of 7) | [NAME] (NM_009053, intron 3 of 7) | 940 | NM_009053 | 19719 | Mm.871 | NM_009053 | ENSMUSG00000025158 | Rfng | MGC90122 | RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
chr7-40 | chr7 | 147131840 | 147132042 | + | 12.4 | 0.667 | TTS (NM_009482) | TTS (NM_009482) | 2186 | [NAME] | 22286 | Mm.10205 | [NAME] | ENSMUSG00000047751 | Utf1 | AI505934 | undifferentiated embryonic cell transcription factor 1
chr11-132 | chr11 | 77991329 | 77991531 | + | 12.4 | 0.625 | promoter-TSS (NM_026708) | promoter-TSS (NM_026708) | -838 | NM_026708 | 68385 | Mm.390375 | NM_026708 | ENSMUSG00000019437 | Tlcd1 | 0610007A15Rik|0610030G03Rik|AA690150|AU015616 | TLC domain containing 1
chr6-74 | chr6 | 130811917 | 130812119 | + | 12.4 | 0.679 | Intergenic | L1Md_F2|LINE|L1 | 385362 | NM_001170851 | 16633 | Mm.4783 | NM_001170851 | [NAME] | Klra2 | Klra30|Ly49b | killer cell lectin-like receptor, subfamily A, member 2
chr4-62 | chr4 | 116691727 | 116691929 | + | 12.4 | 0.842 | promoter-TSS (NM_175135) | promoter-TSS (NM_175135) | -185 | NM_001111277 | 108067 | Mm.34612 | NM_001111277 | ENSMUSG00000028683 | Eif2b3 | 1190002P15Rik | eukaryotic translation initiation factor 2B, subunit 3
chr8-232 | chr8 | 106006019 | 106006221 | + | 12.4 | 0.379 | Intergenic | Intergenic | -121579 | NR_045730 | 71058 | Mm.67707 | NR_045730 |  | 4933400L20Rik | - | RIKEN cDNA 4933400L20 gene
chr7-28 | chr7 | 3645475 | 3645677 | + | 12.4 | 0.586 | promoter-TSS (NM_024168) | promoter-TSS (NM_024168) | 364 | NM_001164205 | 66078 | Mm.379100 | NM_001164204 | ENSMUSG00000035585 | Tsen34 | 0610027F08Rik|Leng5 | tRNA splicing endonuclease 34 homolog (S. cerevisiae)
chr17-51 | chr17 | 26507817 | 26508019 | + | 12.4 | 0.714 | Intergenic | Intergenic | -43992 | NM_001081656 | 240055 | Mm.133211 | NM_001081656 | ENSMUSG00000034413 | Neurl1b | C230078M08Rik|EG240055|MGC183766|MGC183777 | neuralized homolog 1b (Drosophila)
chr8-248 | chr8 | 122431782 | 122431984 | + | 12.4 | 0.542 | Intergenic | Intergenic | -2869 | NM_009462 | 22224 | Mm.421337 | NM_009462 | ENSMUSG00000031826 | Usp10 | 2610014N07Rik|UBPO|Uchrp|mKIAA0190 | ubiquitin specific peptidase 10
chr7-36 | chr7 | 52717270 | 52717472 | + | 12.4 | 0.737 | [NAME] (NM_007527, intron 5 of 5) | [NAME] (NM_007527, intron 5 of 5) | -2115 | NM_010240 | 14325 | Mm.431913 | NM_010240 | ENSMUSG00000050708 | Ftl1 | Ftl|Ftl-1|L-ferritin|MGC102130|MGC102131|MGC118079|MGC118080 | ferritin light chain 1
chr17-52 | chr17 | 27367379 | 27367581 | + | 12.4 | 0.762 | Intergenic | Intergenic | -26097 | NM_146075 | 224640 | Mm.29689 | NM_146075 | ENSMUSG00000044857 | [NAME] | BC026588|Lem2|MGC37253|NET25 | LEM domain containing 2
chr8-270 | chr8 | 128136107 | 128136309 | + | 12.4 | 0.85 | [NAME] intron 2 of 2) | [NAME] intron 2 of 2) | 27670 | NR_015535 | 75930 | [NAME] | NR_015535 |  | 4930567H12Rik | 4930579P07Rik | RIKEN cDNA 4930567H12 gene
chr8-225 | chr8 | 91054465 | 91054667 | + | 12.4 | 0.727 | [NAME] 1 of 7) | [NAME] 1 of 7) | 3034 | NM_001163660 | 93960 | Mm.472081 | NM_001163660 | ENSMUSG00000031661 | Nkd1 | 2810434J10Rik|9030215G15Rik|Nkd | naked cuticle 1 homolog (Drosophila)
chr4-64 | chr4 | 118220748 | 118220950 | + | 12.4 | 0.85 | Intergenic | G-rich|Low_complexity|Low_complexity | -4518 | NM_172383 | 230678 | Mm.23639 | NM_172383 | ENSMUSG00000050854 | Tmem125 | 6330530A05Rik|AV223516|MGC48203 | [NAME] 125
chr2-23 | chr2 | 120229834 | 120230036 | + | 12.4 | 0.696 | promoter-TSS (NM_001110496) | promoter-TSS (NM_001110496) | -83 | NM_001110496 | 211499 | Mm.411810 | NM_001110496 | ENSMUSG00000033808 | Tmem87a | A930025J12Rik | [NAME] 87A
chr12-169 | chr12 | 103356682 | 103356884 | + | 12.4 | 0.76 | Intergenic | Intergenic | -10846 | NM_172152 | 238384 | Mm.312448 | NM_172152 | ENSMUSG00000041771 | Slc24a4 | A930002M03Rik|AW492432|NCKX4 | solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr2-25 | chr2 | 168806464 | 168806666 | + | 12.4 | 0.789 | Intergenic | Intergenic | 2796 | NR_040326 | 75508 | Mm.271256 | NR_040326 |  | 1700017J07Rik | - | RIKEN cDNA 1700017J07 gene
chr15-15 | chr15 | 58717886 | 58718088 | + | 12.4 | 0.85 | Intergenic | Intergenic | -2797 | NM_175226 | 75841 | Mm.460627 | NM_175226 | ENSMUSG00000037075 | Rnf139 | 4930555P18Rik | ring finger protein 139
chr12-151 | chr12 | 86927900 | 86928102 | + | 12.4 | 0.64 | Intergenic | Intergenic | -12054 | NM_001205052 | 81703 | Mm.103560 | NM_001205052 | ENSMUSG00000034271 | Jdp2 | Jundm2|Jundp2|TIF | Jun dimerization protein 2
chr12-179 | chr12 | 106285573 | 106285775 | + | 12.4 | 0.789 | Intergenic | Intergenic | 14775 | NM_028419 | 73046 | Mm.29128 | NM_028419 | ENSMUSG00000021102 | Glrx5 | 2310004O13Rik|2900070E19Rik|AU020725 | glutaredoxin 5 homolog (S. cerevisiae)
chr12-176 | chr12 | 105730307 | 105730509 | + | 12.4 | 0.636 | Intergenic | Intergenic | -18962 | NM_010351 | 14836 | Mm.129 | NM_010351 | ENSMUSG00000021095 | [NAME] | - | [NAME]
chr6-80 | chr6 | 145584799 | 145585001 | + | 12.4 | 0.696 | Intergenic | ORR1B2|LTR|MaLR | 20417 | NM_009449 | 22147 | Mm.270295 | NM_009449 | ENSMUSG00000067338 | Tuba3b | [NAME] | tubulin, alpha 3B
chr8-243 | chr8 | 114270096 | 114270298 | + | 12.4 | 0.769 | Intergenic | Intergenic | -2448 | NM_009954 | 12927 | Mm.3758 | NM_001198839 | ENSMUSG00000031955 | Bcar1 | AI385681|Cas|Crkas | breast cancer anti-estrogen resistance 1
chr11-143 | chr11 | 103822615 | 103822817 | + | 12.4 | 0.826 | Intergenic | Intergenic | -5469 | NM_007477 | 11841 | Mm.5061 | NM_007477 | ENSMUSG00000062421 | Arf2 | - | ADP-ribosylation factor 2
chr11-144 | chr11 | 106874057 | 106874259 | + | 12.4 | 0.81 | Intergenic | Intergenic | -13319 | NM_010655 | 16647 | Mm.423000 | NM_010655 | ENSMUSG00000018362 | Kpna2 | 2410044B12Rik|IPOA1|MGC91246|PTAC58|Rch1 | [NAME] (importin) alpha 2
chr9-46 | chr9 | 21608896 | 21609098 | + | 12.4 | 0.8 | [NAME] intron 43 of 49) | [NAME] intron 43 of 49) | -6007 | NM_145611 | 235041 | Mm.257371 | NM_145611 | ENSMUSG00000032194 | Kank2 | AI504612|Ankrd25|BC010245|MGC12143|MGC7734 | KN motif and ankyrin repeat domains 2
chr7-39 | chr7 | 86611572 | 86611774 | + | 12.4 | 0.727 | promoter-TSS (NM_017462) | promoter-TSS (NM_017462) | -514 | NM_017462 | 18975 | Mm.3616 | NM_017462 | ENSMUSG00000039176 | Polg | AA409516|PolgA | polymerase (DNA directed), gamma
chr1-84 | chr1 | 120218242 | 120218444 | + | 12.4 | 0.762 | promoter-TSS (NM_026472) | promoter-TSS (NM_026472) | -77 | NM_026472 | 67949 | Mm.280311 | NM_026472 | ENSMUSG00000026377 | Mki67ip | AI852665|C130020J04Rik|NIFK | Mki67 (FHA domain) interacting nucleolar phosphoprotein
chr12-180 | chr12 | 106325004 | 106325206 | + | 12.4 | 0.81 | Intergenic | RLTR21|LTR|ERVK | 54206 | NM_028419 | 73046 | Mm.29128 | NM_028419 | ENSMUSG00000021102 | Glrx5 | 2310004O13Rik|2900070E19Rik|AU020725 | glutaredoxin 5 homolog (S. cerevisiae)
chr8-268 | chr8 | 127558736 | 127558938 | + | 12.4 | 0.85 | TTS (NM_016909).2 | TTS (NM_016909).2 | -19258 | NM_174853 | 244667 | [NAME] | NM_170596 | ENSMUSG00000043051 | Disc1 | - | disrupted in schizophrenia 1
chr14-31 | chr14 | 64501507 | 64501709 | + | 12.4 | 0.75 | [NAME] (NM_028228, intron 6 of 6) | MLT1G3|LTR|MaLR | 22459 | NM_028228 | 72400 | Mm.379214 | NM_028228 | ENSMUSG00000021958 | Pinx1 | 2210403I16Rik|2610028A01Rik|67-11-3|AU024023|LPTS|LPTS1|MGC144540 | PIN2/TERF1 interacting, telomerase inhibitor 1
chr6-78 | chr6 | 140244423 | 140244625 | + | 12.4 | 0.696 | Intergenic | Intergenic | -128096 | NM_144920 | 109135 | Mm.247670 | NM_144920 | ENSMUSG00000030231 | Plekha5 | 2810431N21Rik|AI428202|AK129423|Ayu21-9|Gt(pU21)9Imeg|MGC38455|Pepp2 | pleckstrin homology domain containing, family A member 5
chr4-67 | chr4 | 119535854 | 119536056 | + | 12.4 | 0.81 | [NAME] (NM_010657, intron 1 of 8) | [NAME] (NM_010657, intron 1 of 8) | 48672 | NM_010657 | 16656 | Mm.488325 | NM_010657 | ENSMUSG00000028634 | Hivep3 | 2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3 | human immunodeficiency virus type I enhancer binding protein 3
chr17-65 | chr17 | 36202637 | 36202839 | + | 12.4 | 0.667 | Intergenic | B1_Mus1|SINE|Alu | -7422 | NM_001199967 | 100529082 | Mm.484916 | NM_001199967 |  | [NAME] | ENSMUSG00000079492 | predicted gene 11127
chr5-32 | chr5 | 52957994 | 52958196 | + | 12.4 | 0.783 | promoter-TSS (NM_144945) | promoter-TSS (NM_144945) | -576 | NM_144945 | 246316 | Mm.44721 | NM_144945 | ENSMUSG00000039252 | Lgi2 | mKIAA1916 | leucine-rich repeat LGI family, member 2
chr13-31 | chr13 | 22058644 | 22058846 | + | 12.4 | 0.773 | Intergenic | PB1D9|SINE|Alu | -14305 | NM_001162928 | 195236 | Mm.204664 | NM_001162928 | ENSMUSG00000016982 | Pom121l2 | Gm24 | POM121 membrane glycoprotein-like 2 (rat)
chr8-189 | chr8 | 12895497 | 12895699 | + | 12.4 | 0.889 | Intergenic | Intergenic | -20295 | NM_178076 | 17207 | Mm.334413 | NM_001159485 | ENSMUSG00000031442 | Mcf2l | C130040G20Rik|Dbs|Ost|mKIAA0362 | [NAME] transforming sequence-like
chr4-70 | chr4 | 122760251 | 122760453 | + | 12.4 | 0.81 | Intergenic | Intergenic | -22056 | NM_007559 | 12164 | Mm.439764 | NM_007559 | ENSMUSG00000002384 | Bmp8b | Op3 | bone morphogenetic protein 8b
chr4-58 | chr4 | 108292960 | 108293162 | + | 12.4 | 0.857 | intron (NM_177045, intron 1 of 24) | intron (NM_177045, intron 1 of 24) | 500 | NM_177045 | 319965 | Mm.151129 | NM_177045 | ENSMUSG00000028582 | Cc2d1b | A830039B04Rik|Freud2 | coiled-coil and C2 domain containing 1B
chr8-273 | chr8 | 131075461 | 131075663 | + | 12.4 | 0.696 | Intergenic | Intergenic | -133992 | NM_010578 | 16412 | Mm.263396 | NM_010578 | ENSMUSG00000025809 | Itgb1 | 4633401G24Rik|AA409975|AA960159|CD29|ENSMUSG00000051907|Fnrb|Gm9863|gpIIa | [NAME] 1 (fibronectin receptor beta)
chr4-60 | chr4 | 115796381 | 115796583 | + | 12.4 | 0.72 | promoter-TSS (NM_009015) | promoter-TSS (NM_009015) | -187 | NM_001122959 | 19366 | Mm.3655 | NM_001122958 | ENSMUSG00000028702 | Rad54l | RAD54 | RAD54 like (S. cerevisiae)
chr11-126 | chr11 | 4999829 | 5000031 | + | 12.4 | 0.708 | promoter-TSS (NM_007968) | promoter-TSS (NM_007968) | 489 | NM_177370 | 279766 | Mm.260866 | NM_177370 | [NAME] | Rhbdd3 | 5730411O18Rik|Ptag | rhomboid domain containing 3
chr4-55 | chr4 | 99495825 | 99496027 | + | 12.4 | 0.818 | promoter-TSS (NM_026348) | promoter-TSS (NM_026348) | -117 | NM_026348 | 67733 | [NAME] | NM_026348 | ENSMUSG00000028549 | Itgb3bp | 4930471O16Rik|AU022583 | [NAME] 3 binding protein (beta3-endonexin)
chr15-18 | chr15 | 79964375 | 79964577 | + | 12.4 | 0.72 | intron (NM_025609, intron 1 of 10) | intron (NM_025609, intron 1 of 10) | 892 | NM_025609 | 66513 | Mm.288245 | NM_025609 | ENSMUSG00000022414 | Tab1 | 2310012M03Rik|Map3k7ip1 | TGF-beta activated kinase 1/MAP3K7 binding protein 1
chr19-22 | chr19 | 59334320 | 59334522 | + | 12.4 | 0.619 | promoter-TSS (NM_172523) | promoter-TSS (NM_172523) | -947 | NM_172523 | 214084 | Mm.361919 | NM_172523 | ENSMUSG00000025094 | Slc18a2 | 1110037L13Rik|9330105E13|MGC90556|Vmat2 | solute carrier family 18 (vesicular monoamine), member 2
chr6-66 | chr6 | 113728530 | 113728732 | + | 12.4 | 0.789 | [NAME] (NM_009723, intron 11 of 21) | [NAME] (NM_009723, intron 11 of 21) | -37956 | NM_024206 | 110379 | Mm.29296 | NM_024206 | ENSMUSG00000030298 | Sec13 | 1110003H02Rik|Sec13l1|Sec13r | SEC13 homolog (S. cerevisiae)
chr4-77 | chr4 | 154048814 | 154049016 | + | 12.4 | 0.652 | Intergenic | Intergenic | -6939 | NM_028513 | 73353 | Mm.30958 | NM_028513 | ENSMUSG00000051276 | Actrt2 | 1700052K15Rik|Arp-T2|Arpm2 | actin-related protein T2
chr4-78 | chr4 | 154938551 | 154938753 | + | 12.4 | 0.75 | intron (NM_001159637, intron 1 of 11) | intron (NM_001159637, intron 1 of 11) | 728 | NM_001159637 | 192185 | Mm.28347 | NM_001159637 | ENSMUSG00000029063 | Nadk | 4432404C02Rik|BC004012|MGC7589 | NAD kinase
chr1-75 | chr1 | 59433546 | 59433748 | + | 12.4 | 0.577 | Intergenic | Intergenic | -105344 | NM_008057 | 14369 | Mm.297906 | NM_008057 | ENSMUSG00000041075 | Fzd7 | Fz7 | frizzled homolog 7 (Drosophila)
chr12-205 | chr12 | 112428625 | 112428827 | + | 12.4 | 0.85 | [NAME] (NM_011632, intron 1 of 11) | [NAME] (NM_011632, intron 1 of 11) | 23967 | NM_001048206 | 22031 | Mm.27431 | NM_001048206 | ENSMUSG00000021277 | Traf3 | AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn | TNF receptor-associated factor 3
chr11-148 | chr11 | 116755177 | 116755379 | + | 12.4 | 0.789 | Intergenic | Intergenic | -24899 | NM_172948 | 268510 | Mm.35141 | NM_172948 | ENSMUSG00000043857 | Mgat5b | C330018B01|GnT-IX|mGnTVB | mannoside acetylglucosaminyltransferase 5, isoenzyme B
chr8-240 | chr8 | 109707573 | 109707775 | + | 12.4 | 0.789 | 3' UTR (NM_025558, exon 5 of 5) | 3' UTR (NM_025558, exon 5 of 5) | 33113 | NM_025558 | 66427 | Mm.20242 | NM_025558 | ENSMUSG00000031924 | Cyb5b | 1810044O22Rik|AU015618|Cyb5m | cytochrome [NAME]
chr1-85 | chr1 | 129670432 | 129670634 | + | 12.4 | 0.7 | promoter-TSS (NR_045298) | promoter-TSS (NR_045298) | 98 | NR_045298 | 100502745 | Mm.440061 | NR_045298 |  | 2900009J06Rik | - | RIKEN cDNA 2900009J06 gene
chr8-264 | chr8 | 125791958 | 125792160 | + | 12.4 | 0.8 | TTS (NM_016925) | TTS (NM_016925) | 13964 | NM_020497 | 57247 | Mm.379084 | NM_020497 | ENSMUSG00000001065 | Zfp276 | AW048709|D8Ertd370e|D8Ertd377e|Znf276 | zinc finger protein (C2H2 type) 276
chr8-210 | chr8 | 72736677 | 72736879 | + | 12.4 | 0.692 | promoter-TSS (NM_001007570) | promoter-TSS (NM_001007570) | -598 | NM_001007570 | 73095 | Mm.185413 | NM_001007570 | ENSMUSG00000002346 | Slc25a42 | 2900084M01Rik|MGC37808 | solute carrier family 25, member 42
chr15-22 | chr15 | 99305235 | 99305437 | + | 12.4 | 0.826 | promoter-TSS (NM_029236) | promoter-TSS (NM_029236) | -175 | NM_029236 | 75284 | Mm.32826 | NM_029236 | ENSMUSG00000037525 | [NAME] | 4930556P03Rik|AV138748 | BCDIN3 domain containing
chr8-213 | chr8 | 83303477 | 83303679 | + | 12.4 | 0.9 | [NAME] (NM_021356, intron 6 of 9) | [NAME] (NM_021356, intron 6 of 9) | -40220 | NM_053124 | 93762 | Mm.474173 | NM_053124 | ENSMUSG00000031715 | Smarca5 | 4933427E24Rik|D030040M08Rik|D330027N15Rik|MommeD4|Snf2h | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5
chr18-21 | chr18 | 38092414 | 38092616 | + | 12.4 | 0.682 | intron (NM_007858, intron 1 of 26) | intron (NM_007858, intron 1 of 26) | 2550 | NM_007858 | 13367 | Mm.195916 | NM_007858 | [NAME] | Diap1 | D18Wsu154e|Dia1|Diaph1|Drf1|KIAA4062|mKIAA4062|p140mDia | diaphanous homolog 1 (Drosophila)
chr10-25 | chr10 | 80424028 | 80424230 | + | 12.4 | 0.708 | [NAME] (NM_001038655, intron 2 of 3) | [NAME] (NM_001038655, intron 2 of 3) | 31293 | NM_008655 | 17873 | Mm.1360 | NM_008655 | ENSMUSG00000015312 | Gadd45b | AI323528|Myd118 | growth arrest and DNA-damage-inducible 45 beta
chr13-28 | chr13 | 8870452 | 8870654 | + | 12.4 | 0.652 | promoter-TSS (NM_172445) | promoter-TSS (NM_172445) | -265 | NM_172445 | 207615 | Mm.284654 | NM_001039388 | ENSMUSG00000021147 | [NAME] | 3110035P10Rik|4933417A01Rik|6430603N07|AI481191|mKIAA0982 | WD repeat domain 37
chr8-206 | chr8 | 28312626 | 28312828 | + | 12.4 | 0.8 | intron (NM_029674, intron 1 of 8) | intron (NM_029674, intron 1 of 8) | 292 | NM_029674 | 76615 | Mm.272794 | NM_029674 | ENSMUSG00000039720 | Got1l1 | 1700083M11Rik | glutamic-oxaloacetic transaminase 1-like 1
chr5-35 | chr5 | 122593837 | 122594039 | + | 12.4 | 0.773 | Intergenic | Intergenic | -5867 | NM_183307 | 330188 | Mm.386907 | NM_183307 | ENSMUSG00000043036 | Ccdc63 | 4921511C16Rik | coiled-coil domain containing 63
chr7-30 | chr7 | 27964238 | 27964440 | + | 12.4 | 0.76 | promoter-TSS (NM_029391) | promoter-TSS (NM_029391) | -437 | NM_029391 | 19342 | Mm.482114 | NM_029391 | ENSMUSG00000053291 | Rab4b | 1500031G17Rik | RAB4B, member RAS oncogene family
chr12-148 | chr12 | 29320794 | 29320996 | + | 12.4 | 0.714 | promoter-TSS (NM_011300) | promoter-TSS (NM_011300) | -77 | NM_011300 | 20115 | Mm.371579 | NM_011300 | ENSMUSG00000061477 | Rps7 | Rps7A|S7 | ribosomal protein S7
chr12-152 | chr12 | 87706483 | 87706685 | + | 12.4 | 0.704 | [NAME] (NM_001159500, intron 1 of 6) | [NAME] (NM_001159500, intron 1 of 6) | 4517 | NM_001159500 | 26380 | Mm.235550 | NM_001159500 | ENSMUSG00000021255 | Esrrb | Err2|Errb|Estrrb|Nr3b2 | estrogen related receptor, beta
chr15-14 | chr15 | 38110999 | 38111201 | + | 12.4 | 0.7 | Intergenic | ORR1C2|LTR|MaLR | -37858 | NM_008757 | 18285 | Mm.252830 | NM_008757 | ENSMUSG00000061923 | Odf1 | - | outer dense fiber of sperm tails 1
chr14-34 | chr14 | 99664948 | 99665150 | + | 12.4 | 0.56 | Intergenic | Intergenic | -32861 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr4-56 | chr4 | 101268038 | 101268240 | + | 12.4 | 0.773 | intron (NM_001164583, intron 1 of 18) | RMER2|LTR|ERV1 | 44940 | NM_001164583 | 72685 | Mm.76494 | NM_001164583 | ENSMUSG00000028528 | Dnajc6 | 2810027M23Rik|mKIAA0473 | DnaJ (Hsp40) homolog, subfamily C, member 6
chr2-26 | chr2 | 181231056 | 181231258 | + | 12.4 | 0.762 | promoter-TSS (NM_025482) | promoter-TSS (NM_025482) | -801 | NM_025482 | 66314 | Mm.136648 | NM_025482 | ENSMUSG00000000827 | Tpd52l2 | 2810411G23Rik|AU016537|C86069|D54 | tumor protein D52-like 2
chr5-36 | chr5 | 123271285 | 123271487 | + | 12.4 | 0.609 | promoter-TSS (NM_021505) | promoter-TSS (NM_021505) | -38 | NM_001042491 | 59008 | Mm.332667 | NM_001042491 | ENSMUSG00000029472 | Anapc5 | 2510006G12Rik|AA408751|AA536819|AA986414|Anpc5 | anaphase-promoting complex subunit 5
chr12-184 | chr12 | 106980443 | 106980645 | + | 12.4 | 0.636 | exon (NM_030187, exon 10 of 18) | exon (NM_030187, exon 10 of 18) | 36352 | NM_030187 | 78801 | Mm.36006 | NM_030187 | ENSMUSG00000041323 | Ak7 | 4930502N02Rik | adenylate kinase 7
chr8-200 | chr8 | 23272737 | 23272939 | + | 12.4 | 0.889 | exon (NM_011848, exon 2 of 16) | exon (NM_011848, exon 2 of 16) | 128 | NM_001162947 | 23954 | Mm.41413 | NM_001162947 | ENSMUSG00000031478 | Nek3 | - | NIMA (never in mitosis gene a)-related expressed kinase 3
chr11-125 | chr11 | 3814195 | 3814397 | + | 12.4 | 0.727 | 5' UTR (NM_153142, exon 1 of 2) | 5' UTR (NM_153142, exon 1 of 2) | 371 | NM_153142 | 103710 | Mm.171514 | NM_153142 | ENSMUSG00000048807 | Slc35e4 | A330108F03Rik|AI414849|AI536442|MGC28785 | solute carrier family 35, member [NAME]
chr7-33 | chr7 | 39184780 | 39184982 | + | 12.4 | 0.739 | Intergenic | Intergenic | 128331 | NM_001013810 | 434171 | Mm.60990 | NM_001013810 | ENSMUSG00000060565 | Gm5591 | EG434171 | predicted gene 5591
chr2-24 | chr2 | 165213694 | 165213896 | + | 12.4 | 0.727 | promoter-TSS (NM_178411) | promoter-TSS (NM_178411) | -36 | NM_178411 | 228876 | Mm.26316 | NM_178411 | ENSMUSG00000017667 | Zfp334 | D2Ertd535e|MGC27911 | zinc finger protein 334
chr10-28 | chr10 | 118677362 | 118677564 | + | 12.4 | 0.714 | promoter-TSS (NM_027994) | promoter-TSS (NM_027994) | -352 | NM_027994 | 71902 | Mm.203965 | NM_027994 | ENSMUSG00000020114 | Cand1 | 2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829 | cullin associated and neddylation disassociated 1
chr7-29 | chr7 | 24889666 | 24889868 | + | 12.4 | 0.792 | exon (NM_001045486, exon 5 of 5) | exon (NM_001045486, exon 5 of 5) | -7572 | NM_021307 | 57745 | Mm.82678 | NM_021307 | ENSMUSG00000052675 | Zfp112 | [NAME] | zinc finger protein 112
chr3-18 | chr3 | 130994667 | 130994869 | + | 12.4 | 0.739 | [NAME] (NM_027816, intron 4 of 4) | [NAME] (NM_027816, intron 4 of 4) | 11377 | [NAME] | 71519 | Mm.473179 | [NAME] | ENSMUSG00000027983 | Cyp2u1 | 8430436A10Rik | cytochrome P450, family 2, subfamily u, polypeptide 1
chr4-73 | chr4 | 135411516 | 135411718 | + | 12.4 | 0.619 | promoter-TSS (NM_001080387) | promoter-TSS (NM_001080387) | -390 | NM_001080387 | 14105 | Mm.472035 | NM_001080387 | ENSMUSG00000028676 | Srsf10 | FUSIP2|Fusip1|NSSR1|NSSR2|Nssr|SRrp40|Sfrs13a|Srsf13a|TASR|TASR1|TASR2 | serine/arginine-rich splicing factor 10
chr6-79 | chr6 | 145138625 | 145138827 | + | 12.4 | 0.842 | [NAME] (NM_177222, intron 9 of 15) | RSINE1|SINE|B4 | 20764 | NM_177222 | 320662 | Mm.207779 | NM_177222 | ENSMUSG00000043541 | [NAME] | A230084G12Rik|Las1 | cancer susceptibility candidate 1
chr17-56 | chr17 | 30694845 | 30695047 | + | 12.4 | 0.625 | [NAME] (NM_172618, intron 1 of 11) | RMER15-int|LTR|ERVL | 18286 | NM_172618 | 224671 | Mm.41220 | NM_027060 | ENSMUSG00000062202 | Btbd9 | 1700023F20Rik|4930402L05|AI464421 | BTB (POZ) domain containing 9
chr5-33 | chr5 | 113775757 | 113775959 | + | 12.4 | 0.696 | Intergenic | Intergenic | -10456 | NM_001012726 | 503692 | Mm.348794 | NM_001012726 | ENSMUSG00000053873 | Aym1 | - | activator of yeast meiotic promoters 1
chr8-205 | chr8 | 28231390 | 28231592 | + | 12.4 | 0.724 | exon (NM_054044, exon 19 of 19) | exon (NM_054044, exon 19 of 19) | 7613 | NM_025686 | 66653 | Mm.334467 | NM_025686 | ENSMUSG00000031487 | Brf2 | 2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50 | BRF2, subunit of RNA polymerase III transcription initiation factor, BRF1-like
chr8-238 | chr8 | 109079443 | 109079645 | + | 12.4 | 0.615 | 3' UTR (NM_007665, exon 16 of 16) | 3' UTR (NM_007665, exon 16 of 16) | -31499 | NR_045470 | 68692 | Mm.416843 | NR_045470 |  | 1110028F18Rik | - | RIKEN cDNA 1110028F18 gene
chr3-19 | chr3 | 131184650 | 131184852 | + | 12.4 | 0.652 | Intergenic | Intergenic | -42981 | NM_011863 | 23971 | Mm.244912 | NM_011863 | ENSMUSG00000028032 | Papss1 | AI325286|Asapk|SK1 | 3'-phosphoadenosine 5'-phosphosulfate synthase 1
chr8-234 | chr8 | 108225081 | 108225283 | + | 12.4 | 0.68 | promoter-TSS (NM_001047435) | promoter-TSS (NM_001047435) | 128 | NM_001047436 | 56513 | Mm.472753 | NM_001047435 | ENSMUSG00000005699 | Pard6a | 0710008C04Rik|2610010A15Rik|PAR6alpha|Par-6|Par6|Par6c|TAX40|Tip-40 | par-6 (partitioning defective 6,) homolog alpha (C. elegans)
chr11-136 | chr11 | 86922528 | 86922730 | + | 12.4 | 0.593 | promoter-TSS (NM_025377) | promoter-TSS (NM_025377) | -134 | NM_025377 | 66140 | Mm.45008 | NM_025377 | ENSMUSG00000020492 | [NAME] | 1110001A07Rik|C78640|MGC151378|Ska2 | family with sequence similarity 33, member A
chr8-188 | chr8 | 11636114 | 11636316 | + | 12.4 | 0.727 | promoter-TSS (NM_001167967) | promoter-TSS (NM_001167967) | -461 | NR_030779 | 102334 | Mm.12459 | NM_001167967 | ENSMUSG00000031508 | Ankrd10 | 4833425P12Rik|AW549277 | ankyrin repeat domain 10
chr6-67 | chr6 | 124732643 | 124732845 | + | 12.4 | 0.8 | Intergenic | RMER21A|LTR|ERV1 | -3008 | NM_013588 | 16977 | Mm.3207 | NM_013588 | ENSMUSG00000030125 | Lrrc23 | 4921537K05Rik|B7|Lrpb7 | leucine rich repeat containing 23
chr11-135 | chr11 | 86015100 | 86015302 | + | 12.4 | 0.708 | promoter-TSS (NM_178309) | promoter-TSS (NM_178309) | -506 | NM_178309 | 237911 | Mm.186143 | NM_178309 | ENSMUSG00000034329 | [NAME] | 3110009N10Rik|8030460J03Rik|Bach1|FACJ|Fancj|OF | BRCA1 interacting protein C-terminal helicase 1
chr19-18 | chr19 | 43598702 | 43598904 | + | 12.4 | 0.625 | [NAME] (NM_010324, intron 1 of 8) | [NAME] (NM_010324, intron 1 of 8) | 292 | NM_010324 | 14718 | [NAME] | NM_010324 | ENSMUSG00000025190 | Got1 | AI789014|Got-1|cAspAT | glutamate oxaloacetate transaminase 1, soluble
chr4-76 | chr4 | 153206274 | 153206476 | + | 12.4 | 0.833 | Intergenic | Intergenic | 118210 | NR_040670 | 407793 | Mm.260950 | NR_040670 |  | BC039966 | - | cDNA sequence BC039966
chr11-142 | chr11 | 102291410 | 102291612 | + | 12.4 | 0.739 | promoter-TSS (NM_008175) | promoter-TSS (NM_008175) | -125 | NM_008175 | 14824 | Mm.1568 | NM_008175 | ENSMUSG00000034708 | Grn | epithelin | granulin
chr8-244 | chr8 | 117029697 | 117029899 | + | 12.4 | 0.571 | [NAME] (NM_019573, intron 5 of 8) | [NAME] (NM_019573, intron 5 of 8) | 66246 | NM_019573 | 80707 | Mm.440420 | NM_019573 | ENSMUSG00000004637 | Wwox | 5330426P09Rik|9030416C10Rik|WOX1 | WW domain-containing oxidoreductase
chr6-69 | chr6 | 124958520 | 124958722 | + | 12.4 | 0.615 | promoter-TSS (NM_001252083) | promoter-TSS (NM_001252083) | -635 | NM_001252083 | 269800 | Mm.108677 | NM_001252083 | ENSMUSG00000038346 | Zfp384 | BB163993|C130073D16Rik|Ciz|NP|Nmp4 | zinc finger protein 384
chr12-177 | chr12 | 105803084 | 105803286 | + | 12.4 | 0.842 | Intergenic | Intergenic | -91739 | NM_010351 | 14836 | Mm.129 | NM_010351 | ENSMUSG00000021095 | [NAME] | - | [NAME]
chr10-22 | chr10 | 57694389 | 57694591 | + | 12.4 | 0.655 | exon (NM_001081954, exon 1 of 1) | exon (NM_001081954, exon 1 of 1) | 933 | NM_001081954 | 664783 | Mm.482575 | NM_001081954 |  | Dux | AW822073|Dux4|Duxbl|EG664783 | double homeobox
chr6-72 | chr6 | 127212962 | 127213164 | + | 12.4 | 0.591 | Intergenic | Intergenic | -111997 | NM_009829 | 12444 | Mm.333406 | NM_009829 | [NAME] | Ccnd2 | 2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2 | cyclin D2
chr14-30 | chr14 | 56442638 | 56442840 | + | 12.4 | 0.714 | promoter-TSS (NM_023699) | promoter-TSS (NM_023699) | -893 | NM_001168346 | 73181 | Mm.27908 | NM_001168346 | ENSMUSG00000023411 | Nfatc4 | 3110041H08Rik|AW107667|AW546455|Nfat3 | nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 4
chr5-39 | chr5 | 136677726 | 136677928 | + | 12.4 | 0.889 | Intergenic | Intergenic | -3003 | NM_025774 | 66801 | Mm.425295 | NM_025774 | ENSMUSG00000039737 | Prkrip1 | 8430424D23Rik|C114 | [NAME] interacting protein 1 (IL11 inducible)
chr1-89 | chr1 | 178153533 | 178153735 | + | 12.4 | 0.85 | [NAME] 9) | [NAME] 9) | -9561 | NM_001195816 | 319455 | Mm.338001 | NM_001195816 | ENSMUSG00000055214 | Pld5 | B230365F16Rik | phospholipase D family, member 5
chr17-61 | chr17 | 30799240 | 30799442 | + | 12.4 | 0.652 | [NAME] (NM_013811, intron 12 of 92) | [NAME] (NM_013811, intron 12 of 92) | 35460 | NM_013811 | 13417 | Mm.446558 | NM_013811 | ENSMUSG00000033826 | Dnahc8 | ATPase|Hst6.7b|P1-Loop | [NAME], axonemal, heavy chain 8
chr14-37 | chr14 | 100157366 | 100157568 | + | 12.4 | 0.68 | Intergenic | Intergenic | 391548 | NM_010636 | 16597 | Mm.458816 | NM_010636 | ENSMUSG00000072294 | Klf12 | 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik | Kruppel-like factor 12
chr8-272 | chr8 | 129409224 | 129409426 | + | 12.4 | 0.75 | Intergenic | MTEa|LTR|MaLR | 60496 | NM_024214 | 67952 | Mm.489811 | NM_024214 | ENSMUSG00000058779 | Tomm20 | 1810060K07Rik|BB284719|Gm19268|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 | translocase of outer mitochondrial membrane 20 homolog (yeast)
chr8-193 | chr8 | 18697273 | 18697475 | + | 12.4 | 0.889 | intron (NM_007426, intron 7 of 8) | intron (NM_007426, intron 7 of 8) | 44177 | NM_007426 | 11601 | Mm.439874 | NM_007426 | ENSMUSG00000031465 | Angpt2 | Agpt2|Ang-2|Ang2 | angiopoietin 2
chr11-139 | chr11 | 96597338 | 96597540 | + | 12.4 | 0.708 | [NAME], intron 10 of 10) | [NAME], intron 10 of 10) | 41430 | NM_028965 | 74479 | Mm.270781 | NM_001163389 | ENSMUSG00000020876 | Snx11 | 4933439F10Rik|A930041K09Rik|AI117694 | sorting nexin 11
chr16-23 | chr16 | 92466702 | 92466904 | + | 12.4 | 0.727 | promoter-TSS (NM_001081549) | promoter-TSS (NM_001081549) | -412 | NM_001081549 | 54720 | Mm.265744 | NM_001081549 | ENSMUSG00000022951 | Rcan1 | 2410048A02Rik|AA408855|AI429645|AL024459|AV028423|Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1 | regulator of calcineurin 1
chr8-212 | chr8 | 82086085 | 82086287 | + | 12.4 | 0.85 | Intergenic | Intergenic | -77389 | NM_001256033 | 73945 | Mm.34348 | NM_001081164 | ENSMUSG00000036990 | Otud4 | 4930431L18Rik|AI449692|D8Ertd69e|mKIAA1046 | OTU domain containing 4
chr12-196 | chr12 | 109670721 | 109670923 | + | 12.4 | 0.762 | [NAME] intron 1 of 21) | [NAME] intron 1 of 21) | 9796 | NM_001043335 | 68519 | Mm.236645 | NM_001043335 | ENSMUSG00000058070 | Eml1 | 1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAPL|MGC158992 | echinoderm microtubule associated protein like 1
chr12-161 | chr12 | 88754225 | 88754427 | + | 12.4 | 0.542 | Intergenic | Intergenic | 24381 | NR_037228 | 100526546 |  | NR_037228 |  | Mir3068 | mmu-mir-3068 | microRNA 3068
chr13-33 | chr13 | 110810055 | 110810257 | + | 12.4 | 0.842 | Intergenic | Intergenic | 116139 | NR_035442 | 100316683 |  | NR_035442 |  | Mir1904 | Mirn1904|mmu-mir-1904 | microRNA 1904
chr15-23 | chr15 | 99483776 | 99483978 | + | 12.4 | 0.727 | Intergenic | Intergenic | -1790 | NM_001253809 | 26934 | Mm.273804 | NM_001253808 | ENSMUSG00000023015 | Racgap1 | AI227039|AI327394|Band25|GTPase|MgcRacGAP|gtl11|mKIAA1478 | Rac GTPase-activating protein 1
chr2-20 | chr2 | 31051670 | 31051872 | + | 12.4 | 0.652 | intron (NM_178760, intron 14 of 17) | B3|SINE|B2 | 43935 | NM_178760 | 277463 | Mm.474294 | NM_178760 | ENSMUSG00000000194 | Gpr107 | 9930033D15Rik|AI790205|C530034M11|mKIAA1624 | G protein-coupled receptor 107
chr4-59 | chr4 | 108552171 | 108552373 | + | 12.4 | 0.682 | intron (NM_023537, intron 1 of 4) | intron (NM_023537, intron 1 of 4) | 597 | NM_023537 | 69908 | Mm.41580 | NM_023537 | ENSMUSG00000003411 | Rab3b | 2610528C18Rik | RAB3B, member RAS oncogene family
chr8-201 | chr8 | 23901413 | 23901615 | + | 12.4 | 0.773 | [NAME] (NM_029505, intron 7 of 8) | [NAME] (NM_029505, intron 7 of 8) | 14612 | NM_029505 | 64933 | Mm.390023 | NM_001122820 | ENSMUSG00000031539 | Ap3m2 | 5830445E16Rik|AP-3B | adaptor-related protein complex 3, mu 2 subunit
chr12-211 | chr12 | 113327334 | 113327536 | + | 12.4 | 0.81 | Intergenic | L1MA7|LINE|L1 | -17459 | NM_001081169 | 104816 | Mm.77133 | NM_001081169 | ENSMUSG00000037686 | Aspg | A530050D06Rik|AI429460|Gm690 | asparaginase homolog (S. cerevisiae)
chr7-38 | chr7 | 71101984 | 71102186 | + | 12.4 | 0.652 | Intergenic | Intergenic | -18284 | NM_021366 | 50794 | Mm.240473 | NM_021366 | ENSMUSG00000052040 | [NAME] | 0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1 | Kruppel-like factor 13
chr8-221 | chr8 | 87639443 | 87639645 | + | 12.4 | 0.8 | intron (NM_001037745, intron 2 of 4) | ORR1D2|LTR|MaLR | 7450 | NM_001037745 | 244556 | Mm.334682 | NM_001037745 | ENSMUSG00000074194 | Zfp791 | EG244556|MGC117728 | zinc finger protein 791
chr4-52 | chr4 | 43575276 | 43575478 | + | 12.4 | 0.789 | promoter-TSS (NM_013497) | promoter-TSS (NM_013497) | 78 | NM_011602 | 21894 | Mm.208601 | NM_011602 | ENSMUSG00000028465 | Tln1 | Tln | talin 1
chr8-265 | chr8 | 126486386 | 126486588 | + | 12.4 | 0.64 | [NAME] (NM_019552, intron 7 of 12) | [NAME] (NM_019552, intron 7 of 12) | -13322 | NM_172288 | 234865 | Mm.267812 | NM_172288 | ENSMUSG00000039509 | Nup133 | mermaid | nucleoporin 133
chr12-164 | chr12 | 100216303 | 100216505 | + | 12.4 | 0.652 | [NAME], intron 12 of 13) | [NAME], intron 12 of 13) | 57582 | NM_198311 | 76260 | Mm.282660 | NM_029553 | ENSMUSG00000021013 | Ttc8 | 0610012F22Rik|AV001447|BBS8 | tetratricopeptide repeat domain 8
chr13-51 | chr13 | 112849228 | 112849430 | + | 11.6 | 0.75 | Intergenic | Intergenic | -229330 | NM_001168403 | 77318 | [NAME] | NM_001168403 | ENSMUSG00000049985 | Ankrd55 | C030011J08Rik | ankyrin repeat domain 55
chrX-24 | chrX | 108810594 | 108810796 | + | 11.6 | 0.762 | promoter-TSS (NM_001080549) | promoter-TSS (NM_001080549) | -7 | NM_001080549 | 245596 | Mm.246623 | NM_001080549 | ENSMUSG00000034551 | [NAME] | D030011N01Rik|Gm380 | highly divergent homeobox
chr10-47 | chr10 | 85527817 | 85528019 | + | 11.6 | 0.81 | [NAME] (NM_013722, intron 10 of 13) | [NAME] (NM_013722, intron 10 of 13) | -30681 | NR_038024 | 78170 | Mm.444790 | NR_038024 |  | 4930486F22Rik | - | RIKEN cDNA 4930486F22 gene
chr1-91 | chr1 | 5487000 | 5487202 | + | 11.6 | 0.762 | Intergenic | L1VL4|LINE|L1 | -91473 | NM_011011 | 18387 | [NAME] | NM_001204371 | ENSMUSG00000025905 | Oprk1 | K-OR-1|KOR|KOR-1|MGC151172|MSL-1|Oprk2|R21 | opioid receptor, kappa 1
chr17-88 | chr17 | 48385086 | 48385288 | + | 11.6 | 0.762 | 3' UTR (NM_021406, exon 4 of 4) | 3' UTR (NM_021406, exon 4 of 4) | -1757 | NM_021407 | 58218 | Mm.302438 | NM_021407 | ENSMUSG00000041754 | [NAME] | BB134760 | triggering receptor expressed on myeloid cells 3
chr19-35 | chr19 | 46089103 | 46089305 | + | 11.6 | 0.8 | Intergenic | Intergenic | 11236 | NM_176785 | 20170 | Mm.101110 | NM_176785 | ENSMUSG00000074811 | Hps6 | 5330434M19Rik|BLOC2|MGC31055|ru | Hermansky-Pudlak syndrome 6
chr17-92 | chr17 | 66829222 | 66829424 | + | 11.6 | 0.708 | Intergenic | Intergenic | -30233 | NM_001114098 | 68617 | Mm.456506 | NM_001114098 | ENSMUSG00000052105 | 1110012J17Rik | Ccdc165|D130071O13|Kiaa0802|MGC77963|mKIAA0802|t8219b25 | RIKEN cDNA 1110012J17 gene
chr4-100 | chr4 | 114586401 | 114586603 | + | 11.6 | 0.682 | [NAME], intron 2 of 3) | [NAME], intron 2 of 3) | 4608 | NR_030721 | 100040736 | Mm.231287 | NR_030721 |  | 9130206I24Rik | - | RIKEN cDNA 9130206I24 gene
chr9-60 | chr9 | 98323339 | 98323541 | + | 11.6 | 0.895 | promoter-TSS (NM_011254) | promoter-TSS (NM_011254) | 60 | NM_011254 | 19659 | Mm.279741 | NM_011254 | ENSMUSG00000046402 | Rbp1 | CRBPI|Crbp|Rbp-1 | [NAME] 1, cellular
chr8-304 | chr8 | 25706074 | 25706276 | + | 11.6 | 0.85 | [NAME], intron 1 of 9) | [NAME], intron 1 of 9) | 1306 | [NAME] | 15930 | Mm.392 | [NAME] | ENSMUSG00000031551 | Ido1 | Ido|Indo | indoleamine 2,3-dioxygenase 1
chr8-319 | chr8 | 80737461 | 80737663 | + | 11.6 | 0.75 | intron (NM_183096, intron 1 of 13) | intron (NM_183096, intron 1 of 13) | 321 | NM_183096 | 73301 | Mm.61243 | NM_183096 | ENSMUSG00000037101 | Ttc29 | 1700031F13Rik | tetratricopeptide repeat domain 29
chr6-81 | chr6 | 29180515 | 29180717 | + | 11.6 | 0.842 | Intergenic | Intergenic | -18345 | [NAME] | 23917 | Mm.260707 | [NAME] | ENSMUSG00000003500 | Impdh1 | B930086D20Rik | inosine 5'-phosphate dehydrogenase 1
chr13-41 | chr13 | 29272217 | 29272419 | + | 11.6 | 0.762 | Intergenic | B4|SINE|B4 | 164194 | NR_045075 | 77920 | Mm.197051 | NR_045073 |  | A330102I10Rik | - | [NAME] cDNA A330102I10 gene
chr4-99 | chr4 | 107891768 | 107891970 | + | 11.6 | 0.81 | Intergenic | Intergenic | -1342 | NM_001167936 | 230590 | Mm.301798 | NM_001167936 | ENSMUSG00000034645 | [NAME] | BC022150 | zyg-11 homolog A (C. elegans)
chr8-280 | chr8 | 11547058 | 11547260 | + | 11.6 | 0.591 | [NAME] (NM_024248, intron 3 of 14) | [NAME] (NM_024248, intron 3 of 14) | 3612 | NM_024248 | 71941 | [NAME] | NM_024248 | ENSMUSG00000056228 | Cars2 | 2310051N18Rik|2410044A07Rik|D530030H10Rik | cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)
chr12-340 | chr12 | 112408255 | 112408457 | + | 11.6 | 0.619 | [NAME] (NM_011632, intron 1 of 11) | [NAME] (NM_011632, intron 1 of 11) | 3597 | NM_001048206 | 22031 | Mm.27431 | NM_001048206 | ENSMUSG00000021277 | Traf3 | AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn | TNF receptor-associated factor 3
chr12-272 | chr12 | 101870878 | 101871080 | + | 11.6 | 0.75 | [NAME] (NM_153587, intron 3 of 17) | Lx2|LINE|L1 | 92259 | NM_153587 | 73086 | Mm.392855 | NM_153587 | ENSMUSG00000021180 | Rps6ka5 | 3110005L17Rik|6330404E13Rik|AI854034|MGC28385|MSK1|MSPK1|RLPK | ribosomal protein S6 kinase, polypeptide 5
chr17-76 | chr17 | 30023493 | 30023695 | + | 11.6 | 0.75 | [NAME] (NM_001081160, intron 1 of 15) | [NAME] (NM_001081160, intron 1 of 15) | 1233 | NM_001081160 | 74762 | Mm.40901 | NM_001081160 | ENSMUSG00000043557 | Mdga1 | 1200011I03Rik|GPIM | MAM domain containing glycosylphosphatidylinositol anchor 1
chr11-156 | chr11 | 59815877 | 59816079 | + | 11.6 | 0.773 | [NAME] (NM_008819, intron 2 of 6) | ORR1C1|LTR|MaLR | 34363 | NM_008819 | 18618 | Mm.2731 | NM_008819 | ENSMUSG00000000301 | Pemt | AI255394|Pempt|Pempt2 | phosphatidylethanolamine N-methyltransferase
chr7-48 | chr7 | 29222065 | 29222267 | + | 11.6 | 0.64 | promoter-TSS (NM_022024) | promoter-TSS (NM_022024) | -300 | NM_022024 | 63986 | Mm.194536 | NM_001039192 | ENSMUSG00000060791 | Gmfg | 0610039G16Rik|2310057N07Rik|AI324845 | glia maturation factor, gamma
chr8-363 | chr8 | 122258000 | 122258202 | + | 11.6 | 0.64 | intron (NM_026922, intron 7 of 26) | intron (NM_026922, intron 7 of 26) | 34192 | NM_026922 | 69047 | Mm.46251 | NM_026922 | ENSMUSG00000034112 | Atp2c2 | 1810010G06Rik|KIAA0703|Spca2|mKIAA0703 | ATPase, Ca++ transporting, type 2C, member 2
chr1-109 | chr1 | 93088734 | 93088936 | + | 11.6 | 0.727 | intron (NM_001168392, intron 1 of 3) | intron (NM_001168392, intron 1 of 3) | 12436 | NM_001168392 | 51801 | Mm.3272 | NM_001168392 | ENSMUSG00000034353 | Ramp1 | 9130218E19Rik|MGC38240 | receptor (calcitonin) activity modifying protein 1
chr11-164 | chr11 | 70482645 | 70482847 | + | 11.6 | 0.737 | TTS (NM_178116) | TTS (NM_178116) | 172 | NM_172561 | 216873 | Mm.432524 | NM_001167669 | ENSMUSG00000018287 | Spag7 | 5730443G10|ACRP|FSA-1|Fsa1l|MGC67704 | sperm associated antigen 7
chr18-23 | chr18 | 57543731 | 57543933 | + | 11.6 | 0.762 | exon (NM_028447, exon 8 of 9) | exon (NM_028447, exon 8 of 9) | 29445 | NM_028447 | 73137 | Mm.29889 | NM_028447 | ENSMUSG00000024594 | Prrc1 | 1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik | proline-rich coiled-coil 1
chr10-39 | chr10 | 80392792 | 80392994 | + | 11.6 | 0.737 | promoter-TSS (NM_008655) | promoter-TSS (NM_008655) | 57 | NM_008655 | 17873 | Mm.1360 | NM_008655 | ENSMUSG00000015312 | Gadd45b | AI323528|Myd118 | growth arrest and DNA-damage-inducible 45 beta
chr8-288 | chr8 | 13786437 | 13786639 | + | 11.6 | 0.9 | intron (NM_025924, intron 2 of 8) | intron (NM_025924, intron 2 of 8) | 923 | NM_025924 | 67031 | Mm.44858 | NM_025924 | ENSMUSG00000038398 | Upf3a | 2600001C03Rik|4930546M19Rik|MGC151365|RENT3A|UPF3 | [NAME] regulator of nonsense transcripts homolog A (yeast)
chr6-133 | chr6 | 128710811 | 128711013 | + | 11.6 | 0.524 | Intergenic | Intergenic | 27747 | NM_008527 | 17059 | Mm.480764 | NM_001159904 | ENSMUSG00000030325 | Klrb1c | AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c | killer cell lectin-like receptor subfamily B member 1C
chr7-57 | chr7 | 52003985 | 52004187 | + | 11.6 | 0.714 | promoter-TSS (NM_133945) | promoter-TSS (NM_133945) | 87 | NM_133945 | 101568 | Mm.28816 | NM_133945 | ENSMUSG00000002205 | Vrk3 | AI428238 | vaccinia related kinase 3
chr17-91 | chr17 | 56283688 | 56283890 | + | 11.6 | 0.75 | Intergenic | L1MB3|LINE|L1 | -4023 | NM_001130456 | 20359 | Mm.8029 | NM_001130456 | ENSMUSG00000001227 | Sema6b | [NAME] | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B
chr11-178 | chr11 | 100943448 | 100943650 | + | 11.6 | 0.682 | promoter-TSS (NM_027896) | promoter-TSS (NM_027896) | -390 | NM_027896 | 71743 | Mm.486485 | NM_027896 | ENSMUSG00000001755 | Coasy | 1300003G02Rik|Dpck|Ppat|Ukr1 | Coenzyme A synthase
chr8-384 | chr8 | 125748438 | 125748640 | + | 11.6 | 0.7 | promoter-TSS (NM_194446) | promoter-TSS (NM_194446) | -202 | NM_194446 | 234854 | Mm.190984 | NM_194444 | ENSMUSG00000033862 | Cdk10 | BC017131 | cyclin-dependent kinase 10
chr8-307 | chr8 | 26601529 | 26601731 | + | 11.6 | 0.75 | Intergenic | (CA)n|Simple_repeat|Simple_repeat | -27614 | NM_001079909 | 14182 | Mm.265716 | NM_001079908 | ENSMUSG00000031565 | Fgfr1 | AW208770|Eask|FLG|Fgfr-1|Flt-2|Hspy | fibroblast growth factor receptor 1
chr8-329 | chr8 | 91274854 | 91275056 | + | 11.6 | 0.75 | 3' UTR (NM_001128171, exon 18 of 18) | 3' UTR (NM_001128171, exon 18 of 18) | 54012 | NM_001128169 | 74256 | Mm.24282 | NM_001128169 | ENSMUSG00000036712 | Cyld | 2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849 | cylindromatosis (turban tumor syndrome)
chr15-30 | chr15 | 76499078 | 76499280 | + | 11.6 | 0.7 | TTS (NM_010630) | TTS (NM_010630) | 1124 | NM_007989 | 14106 | Mm.42011 | NM_007989 | ENSMUSG00000033837 | Foxh1 | Fast2 | forkhead box H1
chr9-54 | chr9 | 38742183 | 38742385 | + | 11.6 | 0.85 | Intergenic | L1Md_F|LINE|L1 | 4526 | NM_146272 | 258269 | Mm.377403 | NM_146272 | ENSMUSG00000063221 | Olfr930 | MOR171-46 | olfactory receptor 930
chr6-144 | chr6 | 144590569 | 144590771 | + | 11.6 | 0.667 | Intergenic | B4A|SINE|B4 | -30718 | NR_040519 | 66760 | Mm.233631 | NR_040519 |  | 4933425H06Rik | - | RIKEN cDNA 4933425H06 gene
chr10-34 | chr10 | 61780083 | 61780285 | + | 11.6 | 0.762 | [NAME] intron 4 of 21) | [NAME] intron 4 of 21) | 22985 | NM_001146100 | 15275 | Mm.196605 | NM_001146100 | ENSMUSG00000037012 | Hk1 | BB404130|Hk-1|Hk1-s|dea|mHk1-s | hexokinase 1
chr4-114 | chr4 | 117567296 | 117567498 | + | 11.6 | 0.692 | exon (NM_146152, exon 19 of 20) | exon (NM_146152, exon 19 of 20) | -2789 | NM_026344 | 67728 | Mm.396654 | NM_026344 | ENSMUSG00000028540 | Dph2 | 9130020C19Rik|AI467389|Dph2l2 | DPH2 homolog (S. cerevisiae)
chr3-30 | chr3 | 130981361 | 130981563 | + | 11.6 | 0.773 | Intergenic | MIRc|SINE|MIR | -6507 | NM_008212 | 15107 | Mm.260164 | NM_008212 | ENSMUSG00000027984 | Hadh | AA409008|AU019341|AW742602|Hadhsc|Schad | hydroxyacyl-Coenzyme A dehydrogenase
chr14-44 | chr14 | 52642928 | 52643130 | + | 11.6 | 0.8 | Intergenic | Intergenic | -2621 | NM_027248 | 69890 | Mm.475652 | NM_001253694 | ENSMUSG00000049295 | Zfp219 | 2010302A17Rik | zinc finger protein 219
chr12-232 | chr12 | 77727517 | 77727719 | + | 11.6 | 0.778 | intron (NM_013675, intron 9 of 35) | intron (NM_013675, intron 9 of 35) | -78706 | [NAME] | 100504549 | Mm.440349 | [NAME] |  | AI463170 | - | expressed sequence AI463170
chr3-29 | chr3 | 130950810 | 130951012 | + | 11.6 | 0.636 | [NAME] (NM_008212, intron 3 of 7) | ORR1B2|LTR|MaLR | 24044 | NM_008212 | 15107 | Mm.260164 | NM_008212 | ENSMUSG00000027984 | Hadh | AA409008|AU019341|AW742602|Hadhsc|Schad | hydroxyacyl-Coenzyme A dehydrogenase
chr8-340 | chr8 | 107165700 | 107165902 | + | 11.6 | 0.778 | promoter-TSS (NM_026753) | promoter-TSS (NM_026753) | -173 | NM_026753 | 68523 | Mm.279 | NM_026753 | ENSMUSG00000031879 | Fam96b | 1110019N10Rik | family with sequence similarity 96, member B
chr11-181 | chr11 | 102327692 | 102327894 | + | 11.6 | 0.739 | exon (NM_010575, exon 6 of 30) | exon (NM_010575, exon 6 of 30) | 3404 | NM_010575 | 16399 | Mm.26646 | NM_010575 | ENSMUSG00000034664 | Itga2b | AI172977|CD41|CD41B|GpIIb|alphaIIb | [NAME] 2b
chr12-261 | chr12 | 93680690 | 93680892 | + | 11.6 | 0.696 | Intergenic | Lx3A|LINE|L1 | -593194 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr11-155 | chr11 | 57641856 | 57642058 | + | 11.6 | 0.889 | TTS (NM_008213) | TTS (NM_008213) | 3692 | NM_008213 | 15110 | Mm.4746 | NM_008213 | ENSMUSG00000037335 | Hand1 | Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND | heart and neural crest derivatives expressed transcript 1
chr6-154 | chr6 | 147623866 | 147624068 | + | 11.6 | 0.7 | Intergenic | Intergenic | -14796 | NR_033636 | 100039727 | [NAME] | NR_033636 |  | 1700049E15Rik | [NAME] | RIKEN cDNA 1700049E15 gene
chr11-175 | chr11 | 98309259 | 98309461 | + | 11.6 | 0.7 | intron (NM_010346, intron 1 of 14) | intron (NM_010346, intron 1 of 14) | 1212 | NM_010346 | 14786 | Mm.276702 | NM_010346 | ENSMUSG00000019312 | [NAME] | KIAA4028|MGC78181|mKIAA4028 | growth factor receptor bound protein 7
chr15-28 | chr15 | 74282352 | 74282554 | + | 11.6 | 0.824 | Intergenic | Intergenic | -64173 | NM_174991 | 107831 | Mm.43133 | NM_174991 | ENSMUSG00000034730 | Bai1 | B830018M07Rik|KIAA4089|R75078|mKIAA4089 | brain-specific angiogenesis inhibitor 1
chr19-23 | chr19 | 4258006 | 4258208 | + | 11.6 | 0.7 | Intergenic | Intergenic | 11065 | NM_198113 | 245857 | Mm.248388 | NM_198113 | ENSMUSG00000034616 | Ssh3 | BC028922|SSH-3|mSSH-3L | slingshot homolog 3 (Drosophila)
chr4-90 | chr4 | 105283673 | 105283875 | + | 11.6 | 0.773 | Intergenic | Intergenic | 453822 | NM_080555 | 67916 | Mm.348326 | NM_080555 | ENSMUSG00000028517 | Ppap2b | 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b | phosphatidic acid phosphatase type 2B
chr6-141 | chr6 | 141523159 | 141523361 | + | 11.6 | 0.895 | Intergenic | B3|SINE|B2 | 50353 | NM_021471 | 58807 | Mm.284495 | NM_001177772 | ENSMUSG00000030235 | Slco1c1 | MGC90655|OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14 | solute carrier organic anion transporter family, member 1c1
chr1-118 | chr1 | 184431019 | 184431221 | + | 11.6 | 0.714 | intron (NM_009794, intron 2 of 20) | intron (NM_009794, intron 2 of 20) | 16494 | NM_009794 | 12334 | Mm.19306 | NM_009794 | ENSMUSG00000026509 | Capn2 | AI326419|Capa-2|Capa2|m-calpain|m-calpin | calpain 2
chr13-48 | chr13 | 73902012 | 73902214 | + | 11.6 | 0.727 | intron (NM_011390, intron 1 of 23) | intron (NM_011390, intron 1 of 23) | 968 | NM_011390 | 20499 | Mm.275800 | NM_011390 | ENSMUSG00000017756 | Slc12a7 | AA408796|D13Ertd261e|Kcc4 | solute carrier family 12, member 7
chr8-284 | chr8 | 13129099 | 13129301 | + | 11.6 | 0.625 | intron (NM_146207, intron 9 of 19) | intron (NM_146207, intron 9 of 19) | 23479 | NM_146207 | 99375 | Mm.212861 | NM_146207 | ENSMUSG00000031446 | Cul4a | 2810470J21Rik|AW495282|MGC36573 | cullin 4A
chr13-42 | chr13 | 38201174 | 38201376 | + | 11.6 | 0.636 | Intergenic | Intergenic | -41888 | NM_023842 | 109620 | Mm.355327 | NM_023842 | ENSMUSG00000054889 | Dsp | 2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP | [NAME]
chr4-129 | chr4 | 145682994 | 145683196 | + | 11.6 | 0.7 | promoter-TSS (NM_001243139) | promoter-TSS (NM_001243139) | 24 | NM_001243139 | 100041433 | Mm.441741 | NM_001243138 |  | Gm13247 | OTTMUSG00000011075 | predicted gene 13247
chr5-48 | chr5 | 90035921 | 90036123 | + | 11.6 | 0.722 | Intergenic | L1_Mus2|LINE|L1 | -9439 | NR_037571 | 631105 | Mm.7732 | NR_037571 |  | Gm7056 | Gm149 | predicted gene 7056
chr8-289 | chr8 | 13908083 | 13908285 | + | 11.6 | 0.833 | [NAME] (NM_025785, intron 1 of 9) | [NAME] (NM_025785, intron 1 of 9) | 378 | NM_025785 | 66822 | Mm.37950 | NM_025785 | ENSMUSG00000038365 | Fbxo25 | 9130015I06Rik|AI649137|Fbx25 | F-box protein 25
chr11-190 | chr11 | 120173097 | 120173299 | + | 11.6 | 0.632 | Intergenic | Intergenic | 36600 | NM_009609 | 11465 | [NAME] | NM_009609 | ENSMUSG00000062825 | Actg1 | AL023024|Actg|Actl|E51|MGC117491|MGC28612 | [NAME], gamma, cytoplasmic 1
chr13-39 | chr13 | 23503247 | 23503449 | + | 11.6 | 0.5 | Intergenic | Intergenic | 12387 | NM_013924 | 30946 | Mm.292094 | NM_013924 | ENSMUSG00000036376 | Abt1 | - | activator of basal transcription 1
chr11-179 | chr11 | 101309856 | 101310058 | + | 11.6 | 0.667 | [NAME] (NM_027320, intron 1 of 6) | [NAME] (NM_027320, intron 1 of 6) | 231 | NM_027320 | 70110 | Mm.45558 | NM_027320 | ENSMUSG00000010358 | Ifi35 | 2010008K16Rik|AW986054|IFP35|ifi-35 | interferon-induced protein 35
chr2-31 | chr2 | 115406984 | 115407186 | + | 11.6 | 0.944 | promoter-TSS (NM_207264) | promoter-TSS (NM_207264) | -367 | NM_207264 | 399568 | [NAME] | NM_001145898 | ENSMUSG00000040282 | BC052040 | [NAME] | cDNA sequence BC052040
chr11-151 | chr11 | 33040529 | 33040731 | + | 11.6 | 0.667 | [NAME] (NM_008005, intron 2 of 4) | [NAME] (NM_008005, intron 2 of 4) | 6770 | NM_008005 | 14172 | Mm.339812 | NM_008005 | ENSMUSG00000057967 | Fgf18 | D130055P09Rik|FGF-18 | fibroblast growth factor 18
chr6-103 | chr6 | 117841268 | 117841470 | + | 11.6 | 0.789 | Intergenic | Intergenic | -8989 | NM_001166432 | 98758 | Mm.476420 | NM_001166427 | ENSMUSG00000042079 | Hnrnpf | 4833420I20Rik|AA407306|Hnrpf|MGC101981|MGC36971 | heterogeneous nuclear ribonucleoprotein F
chr3-22 | chr3 | 88905639 | 88905841 | + | 11.6 | 0.696 | intron (NM_001253751, intron 1 of 10) | CpG | 149 | NM_134469 | 110196 | [NAME] | NM_001253751 | ENSMUSG00000059743 | Fdps | 6030492I17Rik|AI256750|Fdpsl1|MGC107162|mKIAA1293 | farnesyl diphosphate synthetase
chr11-170 | chr11 | 96603410 | 96603612 | + | 11.6 | 0.9 | [NAME], intron 10 of 10) | [NAME], intron 10 of 10) | 35358 | NM_028965 | 74479 | Mm.270781 | NM_001163389 | ENSMUSG00000020876 | Snx11 | 4933439F10Rik|A930041K09Rik|AI117694 | sorting nexin 11
chr8-360 | chr8 | 119766372 | 119766574 | + | 11.6 | 0.882 | Intergenic | ID_B1|SINE|B4 | -14446 | NM_001163262 | 74440 | Mm.233181 | NM_001163262 | ENSMUSG00000034390 | 4933407C03Rik | 5830471E12Rik|AI314065|AI464126|Cmip | RIKEN cDNA 4933407C03 gene
chr10-35 | chr10 | 61949694 | 61949896 | + | 11.6 | 0.765 | promoter-TSS (NM_133672) | promoter-TSS (NM_133672) | -242 | NM_133672 | 30930 | Mm.473468 | NM_001113355 | ENSMUSG00000020078 | [NAME] | AA407240|HB58|Vps26 | vacuolar protein sorting 26 homolog A (yeast)
chr5-53 | chr5 | 122393451 | 122393653 | + | 11.6 | 0.708 | [NAME] (NM_007804, intron 2 of 22) | [NAME] (NM_007804, intron 2 of 22) | 94515 | NM_175474 | 231717 | Mm.12654 | NM_175474 | ENSMUSG00000044134 | Fam109a | A230106M15Rik|AU017694|IPIP27A|Ses1 | family with sequence similarity 109, member A
chr16-31 | chr16 | 30587936 | 30588138 | + | 11.6 | 0.882 | promoter-TSS (NM_178069) | promoter-TSS (NM_178069) | -362 | NM_178069 | 224092 | Mm.567 | NM_178069 | ENSMUSG00000022538 | Lsg1 | 5830465I20|AA409273|D16Bwg1547e | large subunit GTPase 1 homolog (S. cerevisiae)
chr7-52 | chr7 | 31644296 | 31644498 | + | 11.6 | 0.636 | Intergenic | Intergenic | 2092 | NM_194057 | 233081 | Mm.425422 | NM_194057 | ENSMUSG00000044453 | Ffar1 | Gpr40 | free fatty acid receptor 1
chr5-58 | chr5 | 136270564 | 136270766 | + | 11.6 | 0.714 | Intergenic | Intergenic | 16146 | NM_008617 | 17448 | Mm.297096 | NM_008617 | ENSMUSG00000019179 | Mdh2 | MDH|Mdh-2|Mor-1|Mor1 | malate dehydrogenase 2, NAD (mitochondrial)
chr12-262 | chr12 | 94582645 | 94582847 | + | 11.6 | 0.682 | Intergenic | Lx3C|LINE|L1 | -1495149 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr10-48 | chr10 | 89195004 | 89195206 | + | 11.6 | 0.615 | promoter-TSS (NM_025914) | promoter-TSS (NM_025914) | -65 | NM_025914 | 67019 | Mm.335292 | NM_025914 | ENSMUSG00000019948 | Actr6 | 2010200J04Rik|AU044443|Arp6|ArpX|CDA12 | ARP6 actin-related protein 6 homolog (yeast)
chr7-64 | chr7 | 133626325 | 133626527 | + | 11.6 | 0.889 | Intergenic | Intergenic | -4443 | NM_172745 | 233870 | Mm.197829 | NM_001163713 | ENSMUSG00000073838 | [NAME] | 2300002G02Rik|C76308|C76389|EF-TuMT|EFTU | [NAME] translation elongation factor, mitochondrial
chr4-105 | chr4 | 116358467 | 116358669 | + | 11.6 | 0.762 | promoter-TSS (NR_040442) | promoter-TSS (NR_040442) | 59 | NR_040442 | 100502959 | Mm.395400 | NR_040442 |  | AV051173 | - | expressed sequence AV051173
chr9-64 | chr9 | 108103605 | 108103807 | + | 11.6 | 0.789 | Intergenic | Intergenic | -10992 | NM_007567 | 12217 | Mm.20425 | NM_007567 | ENSMUSG00000032589 | Bsn | - | bassoon
chr12-273 | chr12 | 103045934 | 103046136 | + | 11.6 | 0.75 | [NAME], intron 4 of 10) | [NAME], intron 4 of 10) | 11230 | NM_011812 | 23876 | Mm.465863 | NM_011812 | ENSMUSG00000021186 | Fbln5 | A55|DANCE|EVEC | fibulin 5
chr4-122 | chr4 | 128597738 | 128597940 | + | 11.6 | 0.632 | Intergenic | Intergenic | 36455 | NM_178110 | 67525 | Mm.30653 | NM_178110 | ENSMUSG00000041000 | Trim62 | 6330414G21Rik|AI450348 | tripartite motif-containing 62
chr12-323 | chr12 | 111305072 | 111305274 | + | 11.6 | 0.65 | Intergenic | Intergenic | 91110 | NR_045466 | 67280 | Mm.390495 | NR_045466 |  | 3110009F21Rik | - | RIKEN cDNA 3110009F21 gene
chr6-130 | chr6 | 127720014 | 127720216 | + | 11.6 | 0.789 | promoter-TSS (NM_201371) | promoter-TSS (NM_201371) | -938 | NM_201371 | 381813 | Mm.39750 | NM_201371 | ENSMUSG00000030350 | Prmt8 | Hrmt1l3|Hrmt1l4 | protein arginine N-methyltransferase 8
chr15-36 | chr15 | 100906450 | 100906652 | + | 11.6 | 0.667 | Intergenic | L2c|LINE|L2 | -21721 | NM_001214911 | 668225 | Mm.385011 | NM_001214911 |  | Fignl2 | EG668225 | fidgetin-like 2
chr5-41 | chr5 | 14882629 | 14882831 | + | 11.6 | 0.64 | Intergenic | RMER1A|Other|Other | 32159 | NM_198666 | 381714 | Mm.368256 | NM_198666 | ENSMUSG00000033219 | Gm9758 | ENSMUSG00000033219|MGC58177 | predicted gene 9758
chr2-28 | chr2 | 26359578 | 26359780 | + | 11.6 | 0.737 | promoter-TSS (NM_008714) | promoter-TSS (NM_008714) | -337 | NM_008714 | 18128 | Mm.290610 | NM_008714 | ENSMUSG00000026923 | Notch1 | 9930111A19Rik|Mis6|N1|Tan1|lin-12 | Notch gene homolog 1 (Drosophila)
chrX-30 | chrX | 159197323 | 159197525 | + | 11.6 | 0.739 | promoter-TSS (NM_009031) | promoter-TSS (NM_009031) | -880 | NM_009031 | 245688 | Mm.486181 | NM_009031 | ENSMUSG00000031353 | Rbbp7 | AA409861|AI173248|AU019541|BB114024|mRbAp46 | retinoblastoma binding protein 7
chr8-275 | chr8 | 10006722 | 10006924 | + | 11.6 | 0.783 | 5' UTR (NM_033622, exon 1 of 7) | 5' UTR (NM_033622, exon 1 of 7) | 190 | NM_033622 | 24099 | Mm.28835 | NM_033622 | ENSMUSG00000031497 | Tnfsf13b | BAFF|BLyS|D8Ertd387e|MGC124060|MGC124061|TALL-1|TALL1|THANK|TNFSF20|zTNF4 | tumor necrosis factor (ligand) superfamily, member 13b
chr4-117 | chr4 | 119933905 | 119934107 | + | 11.6 | 0.682 | Intergenic | Intergenic | 25860 | NM_194060 | 329934 | Mm.277090 | NM_194060 | ENSMUSG00000052135 | Foxo6 | - | forkhead box O6
chr14-48 | chr14 | 73726185 | 73726387 | + | 11.6 | 0.783 | promoter-TSS (NM_009029) | promoter-TSS (NM_009029) | -688 | NM_009029 | 19645 | Mm.273862 | NM_009029 | ENSMUSG00000022105 | Rb1 | Rb|Rb-1|pRb | retinoblastoma 1
chr12-286 | chr12 | 105775912 | 105776114 | + | 11.6 | 0.65 | Intergenic | Intergenic | -64567 | NM_010351 | 14836 | Mm.129 | NM_010351 | ENSMUSG00000021095 | [NAME] | - | [NAME]
chr9-59 | chr9 | 65441305 | 65441507 | + | 11.6 | 0.696 | exon (NM_172453, exon 10 of 12) | exon (NM_172453, exon 10 of 12) | 6394 | NM_172453 | 208084 | Mm.211032 | NM_172453 | ENSMUSG00000041064 | Pif1 | 4631410M14|AI449441 | PIF1 5'-to-3' DNA helicase homolog (S. cerevisiae)
chr11-184 | chr11 | 116603664 | 116603866 | + | 11.6 | 0.7 | Intergenic | Intergenic | -9716 | NR_003364 | 193217 | Mm.100084 | NR_003364 |  | BC018473 | - | cDNA sequence BC018473
chr6-118 | chr6 | 124188250 | 124188452 | + | 11.6 | 0.714 | Intergenic | L1Md_F3|LINE|L1 | -6549 | NM_001104642 | 232367 | Mm.469872 | NM_001104642 | ENSMUSG00000072778 | Vmn2r27 | EG232367 | vomeronasal 2, receptor27
chr4-87 | chr4 | 103324712 | 103324914 | + | 11.6 | 0.833 | Intergenic | Intergenic | 269708 | NR_040673 | 622167 | Mm.244115 | NR_040673 |  | LOC622167 | - | uncharacterized LOC622167
chr14-58 | chr14 | 99780482 | 99780684 | + | 11.6 | 0.7 | Intergenic | Intergenic | 82673 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
[NAME] | chr11 | 84337353 | 84337555 | + | 11.6 | 0.625 | [NAME], intron 1 of 4) | [NAME], intron 1 of 4) | 1582 | NM_008498 | 16869 | Mm.4965 | NM_008498 | ENSMUSG00000018698 | Lhx1 | Lim1 | LIM homeobox protein 1
chr5-54 | chr5 | 124613162 | 124613364 | + | 11.6 | 0.737 | [NAME] (NM_011256, intron 1 of 23) | [NAME] (NM_011256, intron 1 of 23) | 47146 | NM_144509 | 65105 | Mm.29430 | NM_144509 | ENSMUSG00000029404 | Arl6ip4 | AA408210|AA408365|Aip-4|Srp25 | ADP-ribosylation factor-like 6 interacting protein 4
chr12-257 | chr12 | 92886365 | 92886567 | + | 11.6 | 0.762 | exon (NM_175367, exon 5 of 7) | exon (NM_175367, exon 5 of 7) | -57539 | NM_175335 | 83602 | Mm.432242 | NM_031391 | ENSMUSG00000020962 | Gtf2a1 | 6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1 | general transcription factor II A, 1
chr9-63 | chr9 | 106183976 | 106184178 | + | 11.6 | 0.75 | [NAME] (NM_027354, intron 1 of 10) | [NAME] (NM_027354, intron 1 of 10) | 685 | NM_027354 | 70235 | Mm.23054 | NM_027354 | ENSMUSG00000023345 | Poc1a | 2510040D07Rik|Wdr51a | POC1 centriolar protein homolog A (Chlamydomonas)
chr19-27 | chr19 | 6492314 | 6492516 | + | 11.6 | 0.75 | [NAME] (NM_020253, intron 15 of 22) | [NAME] (NM_020253, intron 15 of 22) | 50655 | NM_009203 | 20521 | Mm.391146 | NM_009203 | [NAME] | Slc22a12 | AI987855|OAT4L|Rst|Slc22al2|URAT1 | solute carrier family 22 (organic anion/cation transporter), member 12
chr12-350 | chr12 | 113629403 | 113629605 | + | 11.6 | 0.714 | Intergenic | B4A|SINE|B4 | 31905 | NR_036459 | 100504733 | Mm.255309 | NM_176956 | ENSMUSG00000047828 | A730018C14Rik | MGC198723 | RIKEN cDNA A730018C14 gene
chr2-39 | chr2 | 172882651 | 172882853 | + | 11.6 | 0.714 | Intergenic | Intergenic | 35349 | NM_019547 | 56190 | Mm.485782 | NM_019547 | ENSMUSG00000027510 | Rbm38 | Rnpc1|Seb4|Seb4l | RNA binding motif protein 38
chr4-136 | chr4 | 155342817 | 155343019 | + | 11.6 | 0.789 | Intergenic | Intergenic | 6497 | NM_026125 | 67389 | Mm.29140 | NM_026125 | ENSMUSG00000023571 | Fam132a | 1110035L05Rik|C1qdc2|CTRP12|alipolin | family with sequence similarity 132, member A
chr7-58 | chr7 | 52104345 | 52104547 | + | 11.6 | 0.593 | promoter-TSS (NM_026270) | promoter-TSS (NM_026270) | 3 | NM_001042655 | 233204 | Mm.27567 | NM_144924 | ENSMUSG00000038520 | Tbc1d17 | BC017607|MGC27642 | TBC1 domain family, member 17
chr5-57 | chr5 | 135980282 | 135980484 | + | 11.6 | 0.75 | [NAME] (NM_146001, intron 1 of 30) | B1_Mur2|SINE|Alu | 40609 | NM_146001 | 215114 | Mm.280805 | NM_146001 | ENSMUSG00000039959 | [NAME] | 2610109B09Rik|A930014B11Rik|E130315I21Rik|KIAA4113|MGC27616|mKIAA4113 | huntingtin interacting protein 1
chr6-94 | chr6 | 114342148 | 114342350 | + | 11.6 | 0.75 | Intergenic | MLT1K|LTR|MaLR | -5681 | NM_008285 | 15465 | Mm.333327 | NM_008285 | ENSMUSG00000053004 | Hrh1 | Bphs|H1R|HH1R|Hir | histamine receptor H1
chr12-308 | chr12 | 109370594 | 109370796 | + | 11.6 | 0.652 | intron (NM_028262, intron 6 of 12) | intron (NM_028262, intron 6 of 12) | 46799 | NM_028262 | 52690 | Mm.159185 | NM_028262 | ENSMUSG00000056770 | Setd3 | 2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e | SET domain containing 3
chr8-314 | chr8 | 74067283 | 74067485 | + | 11.6 | 0.696 | [NAME], intron 3 of 8) | [NAME], intron 3 of 8) | 555 | [NAME] | 73711 | Mm.307770 | [NAME] | ENSMUSG00000031813 | Fam125a | 1110012M11Rik|MGC99951 | family with sequence similarity 125, member A
chr4-113 | chr4 | 117169515 | 117169717 | + | 11.6 | 0.682 | promoter-TSS (NM_025739) | promoter-TSS (NM_025739) | -96 | NM_025739 | 66743 | Mm.318331 | NM_025739 | ENSMUSG00000028677 | Rnf220 | 4732477A13|4931406I20Rik|5730503K05Rik|AV302541 | ring finger protein 220
chr12-321 | chr12 | 111036115 | 111036317 | + | 11.6 | 0.727 | Intergenic | ORR1D2|LTR|MaLR | 50128 | NR_037233 | 100499517 |  | NR_037233 |  | Mir3072 | mmu-mir-3072 | microRNA 3072
chr8-342 | chr8 | 107807337 | 107807539 | + | 11.6 | 0.652 | [NAME] (NM_001166394, intron 4 of 6) | [NAME] (NM_001166394, intron 4 of 6) | 5990 | NM_001166394 | 74356 | Mm.487679 | NM_001166394 | ENSMUSG00000014837 | 4931428F04Rik | AI426165|Kiaa0895l | RIKEN cDNA 4931428F04 gene
chr4-81 | chr4 | 21774696 | 21774898 | + | 11.6 | 0.857 | promoter-TSS (NM_025669) | promoter-TSS (NM_025669) | 67 | NM_025669 | 66625 | Mm.100117 | NM_025669 | ENSMUSG00000028248 | Sfrs18 | 5730406M06Rik|AA673174|Pnisr|Srsf18 | serine/arginine-rich splicing factor 18
chr8-358 | chr8 | 117589286 | 117589488 | + | 11.6 | 0.7 | [NAME] (NM_019573, intron 8 of 8) | ID_B1|SINE|B4 | 625835 | NM_019573 | 80707 | Mm.440420 | NM_019573 | ENSMUSG00000004637 | Wwox | 5330426P09Rik|9030416C10Rik|WOX1 | WW domain-containing oxidoreductase
chr15-29 | chr15 | 75900490 | 75900692 | + | 11.6 | 0.7 | promoter-TSS (NM_134089) | promoter-TSS (NM_134089) | -431 | NM_134089 | 105782 | Mm.25568 | NM_134089 | ENSMUSG00000022568 | Scrib | AI118201|CRIB|Crc|KIAA0147|SCRIB1|Scrb1|mKIAA0147|vartul | scribbled homolog (Drosophila)
chr8-355 | chr8 | 116158510 | 116158712 | + | 11.6 | 0.714 | promoter-TSS (NM_001048143) | promoter-TSS (NM_001048143) | -875 | NM_001048143 | 270096 | Mm.74689 | NM_001048143 | ENSMUSG00000078908 | Mon1b | 5031407H10|5033413H12Rik | MON1 homolog b (yeast)
chr1-119 | chr1 | 193112804 | 193113006 | + | 11.6 | 0.65 | Intergenic | Intergenic | 29092 | NM_025424 | 66208 | Mm.46444 | NM_025424 | ENSMUSG00000037499 | Nenf | 1110060M21Rik|SCIRP10|Spuf | neuron derived neurotrophic factor
chr8-383 | chr8 | 125202910 | 125203112 | + | 11.6 | 0.682 | promoter-TSS (NM_001109873) | promoter-TSS (NM_001109873) | -936 | NM_177289 | 12398 | Mm.194339 | NM_001109873 | ENSMUSG00000006362 | Cbfa2t3 | A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2 | core-binding factor, runt domain, alpha subunit 2, translocated to, 3 (human)
chr1-94 | chr1 | 74171847 | 74172049 | + | 11.6 | 0.522 | promoter-TSS (NM_027884) | promoter-TSS (NM_027884) | -167 | NM_001034060 | 435626 | Mm.240447 | NM_001034060 | ENSMUSG00000061815 | Rufy4 | F930048N03Rik | RUN and FYVE domain containing 4
chr14-41 | chr14 | 27321884 | 27322086 | + | 11.6 | 0.789 | [NAME], intron 1 of 22) | Lx5|LINE|L1 | 31241 | NM_032008 | 83997 | Mm.36769 | NM_032008 | ENSMUSG00000021870 | Slmap | D330001L02Rik|KIAA1601|Slap|mKIAA1601 | sarcolemma associated protein
chr4-120 | chr4 | 122648555 | 122648757 | + | 11.6 | 0.783 | Intergenic | Intergenic | -10225 | NM_029662 | 76574 | Mm.331842 | NM_029662 | ENSMUSG00000028655 | Mfsd2a | 1700018O18Rik|Mfsd2 | major facilitator superfamily domain containing 2A
chr15-35 | chr15 | 99554680 | 99554882 | + | 11.6 | 0.783 | 3' UTR (NM_010271, exon 8 of 8) | 3' UTR (NM_010271, exon 8 of 8) | -1268 | NM_183256 | 66379 | Mm.5265 | NM_183256 | ENSMUSG00000023020 | 2310016M24Rik | AA959804|Cox14|MGC106475 | RIKEN cDNA 2310016M24 gene
chr1-116 | chr1 | 182806318 | 182806520 | + | 11.6 | 0.75 | Intergenic | B1_Mur4|SINE|Alu | -16831 | NM_177099 | 320202 | Mm.87078 | NM_177099 | ENSMUSG00000066652 | Lefty2 | 6030463A22Rik|AV214969|Ebaf|Lefta|Leftb|MGC98569 | left-right determination factor 2
chr17-89 | chr17 | 49785757 | 49785959 | + | 11.6 | 0.737 | [NAME] (NM_177052, intron 3 of 22) | MTD|LTR|MaLR | 31361 | NM_177052 | 319991 | Mm.441340 | NM_177052 | ENSMUSG00000023999 | Kif6 | D130004B10Rik|D130084M03Rik | [NAME] member 6
chr8-374 | chr8 | 123706195 | 123706397 | + | 11.6 | 0.583 | Intergenic | B4A|SINE|B4 | 54711 | NM_008024 | 14241 | Mm.5111 | NM_008024 |  | Foxl1 | FREAC7|Fkh6|fkh-6 | forkhead box L1
chr7-66 | chr7 | 134404319 | 134404521 | + | 11.6 | 0.889 | promoter-TSS (NM_023203) | promoter-TSS (NM_023203) | -239 | NM_023203 | 66422 | Mm.29898 | NM_023203 | ENSMUSG00000042462 | Dctpp1 | 2410015N17Rik|AI854235|RS21-C6 | dCTP pyrophosphatase 1
chr8-301 | chr8 | 23725966 | 23726168 | + | 11.6 | 0.737 | Intergenic | Intergenic | -8448 | NM_145592 | 234130 | Mm.157322 | NM_145592 | ENSMUSG00000031535 | Dkk4 | Dkk-4|MGC25705 | [NAME] 4 ([NAME] laevis)
chr8-396 | chr8 | 128092511 | 128092713 | + | 11.6 | 0.833 | Intergenic | Intergenic | -15926 | NR_015535 | 75930 | [NAME] | NR_015535 |  | 4930567H12Rik | 4930579P07Rik | RIKEN cDNA 4930567H12 gene
chr17-93 | chr17 | 69231328 | 69231530 | + | 11.6 | 0.773 | Intergenic | Intergenic | 44953 | NM_001206661 | 622645 | Mm.86422 | NM_001206661 |  | Tmem200c | EG622645|Gm6338 | [NAME] 200C
chr14-51 | chr14 | 98955582 | 98955784 | + | 11.6 | 0.65 | Intergenic | Lx|LINE|L1 | -386921 | NM_007826 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr10-44 | chr10 | 81069132 | 81069334 | + | 11.6 | 0.714 | [NAME] (NR_030677, intron 1 of 2) | [NAME] (NR_030677, intron 1 of 2) | 180 | NR_030677 | 268319 | Mm.489976 | NM_001033363 |  | BC025920 | - | zinc finger protein pseudogene
chr8-399 | chr8 | 129021463 | 129021665 | + | 11.6 | 0.632 | Intergenic | Intergenic | -22599 | NM_001159907 | 212728 | Mm.482479 | NM_001159907 | ENSMUSG00000090290 | Gm17296 | Gm179|Tarbp1 | predicted gene, 17296
chr12-301 | chr12 | 107604234 | 107604436 | + | 11.6 | 0.833 | Intergenic | Intergenic | 81541 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chrX-27 | chrX | 137491010 | 137491212 | + | 11.6 | 0.652 | promoter-TSS (NM_174875) | promoter-TSS (NM_174875) | 139 | NM_016883 | 53380 | Mm.17640 | NM_001164177 | ENSMUSG00000031429 | Psmd10 | AW554874 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 10
chr7-41 | chr7 | 12596906 | 12597108 | + | 11.6 | 0.789 | Intergenic | Intergenic | -29641 | NM_001166731 | 628946 | Mm.484974 | NM_001166731 | ENSMUSG00000091201 | Vmn1r77 | Gm6935 | vomeronasal 1 receptor 77
chr10-31 | chr10 | 40068675 | 40068877 | + | 11.6 | 0.708 | promoter-TSS (NM_198164) | promoter-TSS (NM_198164) | -338 | NM_001168304 | 78334 | [NAME] | NM_001168304 | ENSMUSG00000038481 | Cdk19 | 2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028 | cyclin-dependent kinase 19
chr6-107 | chr6 | 119337987 | 119338189 | + | 11.6 | 0.833 | [NAME] (NM_197985, intron 1 of 7) | [NAME] (NM_197985, intron 1 of 7) | 29413 | NM_197985 | 68465 | Mm.291826 | NM_197985 | ENSMUSG00000030168 | Adipor2 | 1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2 | adiponectin receptor 2
chr12-297 | chr12 | 107181992 | 107182194 | + | 11.6 | 0.65 | Intergenic | Intergenic | -66380 | NM_011705 | 22367 | Mm.2981 | NM_001029843 | ENSMUSG00000021115 | Vrk1 | 51PK | vaccinia related kinase 1
chr11-154 | chr11 | 57617043 | 57617245 | + | 11.6 | 0.889 | [NAME] (NM_001081168, intron 1 of 3) | [NAME] (NM_001081168, intron 1 of 3) | 2005 | NM_001081168 | 50724 | [NAME] | NM_001081168 | ENSMUSG00000020519 | Sap30l | 2310079P12Rik|AF006998|L55|MGC151406|MGC151408 | SAP30-like
chr9-57 | chr9 | 53110301 | 53110503 | + | 11.6 | 0.824 | intron (NM_176846, intron 1 of 5) | intron (NM_176846, intron 1 of 5) | 627 | NM_176846 | 320051 | Mm.277540 | NM_176846 | ENSMUSG00000034584 | Exph5 | AC079869.22gm5|B130009M24Rik|E030050P12|Kiaa0624|Slac2b|slac2-b | exophilin 5
chr6-91 | chr6 | 113315523 | 113315725 | + | 11.6 | 0.714 | Intergenic | Intergenic | 11890 | NM_133932 | 101206 | Mm.266811 | NM_133932 | ENSMUSG00000048930 | Tada3 | 1110004B19Rik|ADA3|AI987856|Tada3l | transcriptional adaptor 3
chr12-276 | chr12 | 103214467 | 103214669 | + | 11.6 | 0.708 | intron (NM_016856, intron 1 of 14) | intron (NM_016856, intron 1 of 14) | 384 | NM_016856 | 51786 | Mm.716 | NM_016856 | ENSMUSG00000041781 | Cpsf2 | 100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367 | cleavage and polyadenylation specific factor 2
chr6-143 | chr6 | 143952498 | 143952700 | + | 11.6 | 0.778 | intron (NM_001113559, intron 6 of 13) | intron (NM_001113559, intron 6 of 13) | 205489 | NM_001113559 | 20678 | [NAME] | NM_001113559 | ENSMUSG00000041540 | Sox5 | A730017D01Rik|AI528773|MGC124352 | SRY-box containing gene 5
chr6-127 | chr6 | 126318596 | 126318798 | + | 11.6 | 0.75 | Intergenic | Intergenic | -39993 | NR_045480 | 100038574 | Mm.399353 | NR_045480 |  | Gm10415 | ENSMUSG00000072759 | predicted gene 10415
chr2-30 | chr2 | 92210525 | 92210727 | + | 11.6 | 0.65 | [NAME] (NM_172670, intron 3 of 14) | [NAME] (NM_172670, intron 3 of 14) | 567 | NM_172670 | 228366 | Mm.31158 | NM_001166633 | ENSMUSG00000040434 | Gyltl1b | 5730485C17Rik|AI891893|KIAA4105|Large2|Largel|mKIAA4105 | glycosyltransferase-like 1B
chr11-187 | chr11 | 117489942 | 117490144 | + | 11.6 | 0.714 | Intergenic | Intergenic | 17482 | NR_015489 | 78403 | [NAME] | NR_015489 |  | 2900041M22Rik | - | RIKEN cDNA 2900041M22 gene
[NAME] | chr11 | 97849321 | 97849523 | + | 11.6 | 0.652 | Intergenic | MER5A|DNA|MER1_type | -1662 | NM_001163608 | 72324 | Mm.482750 | NM_001163608 | ENSMUSG00000017417 | Plxdc1 | 2410003I07Rik|AI848450|MGC130377|Tem7 | plexin domain containing 1
chr10-52 | chr10 | 119913475 | 119913677 | + | 11.6 | 0.833 | 5' UTR (NM_010441, exon 1 of 5) | 5' UTR (NM_010441, exon 1 of 5) | 415 | NM_010441 | 15364 | Mm.157190 | NM_010441 | ENSMUSG00000056758 | Hmga2 | 9430083A20Rik|HMGI-C|Hmgic|MGC103393|pg|pygmy | high mobility group AT-hook 2
chr4-128 | chr4 | 134848733 | 134848935 | + | 11.6 | 0.739 | Intergenic | Intergenic | -20159 | NM_013885 | 29876 | Mm.257765 | NM_013885 | ENSMUSG00000037242 | Clic4 | D0Jmb3|TU-74|mc3s5|mtCLIC | chloride intracellular channel 4 (mitochondrial)
chr6-147 | chr6 | 145144338 | 145144540 | + | 11.6 | 0.842 | [NAME] (NM_177222, intron 6 of 15) | [NAME] (NM_177222, intron 6 of 15) | 15051 | NM_177222 | 320662 | Mm.207779 | NM_177222 | ENSMUSG00000043541 | [NAME] | A230084G12Rik|Las1 | cancer susceptibility candidate 1
chr6-100 | chr6 | 116786548 | 116786750 | + | 11.6 | 0.882 | Intergenic | Lx6|LINE|L1 | -119873 | NM_178768 | 319776 | Mm.133120 | NM_178768 | ENSMUSG00000048108 | Tmem72 | C230095G01Rik | [NAME] 72
chr6-115 | chr6 | 122559890 | 122560092 | + | 11.6 | 0.652 | promoter-TSS (NM_008108) | promoter-TSS (NM_008108) | 98 | NM_008108 | 14562 | Mm.299742 | NM_008108 | ENSMUSG00000030117 | Gdf3 | C78318|Gdf-3|MGC123990|MGC123991|Vgr-2|Vgr2|ecat9 | growth differentiation factor 3
chr16-28 | chr16 | 13818865 | 13819067 | + | 11.6 | 0.68 | promoter-TSS (NM_010946) | promoter-TSS (NM_010946) | -404 | NM_010946 | 18203 | Mm.380410 | NM_010946 | ENSMUSG00000022681 | Ntan1 | - | N-terminal Asn amidase
chr3-27 | chr3 | 107896226 | 107896428 | + | 11.6 | 0.8 | [NAME], intron 2 of 8) | [NAME], intron 2 of 8) | 341 | NM_008141 | 14686 | Mm.439652 | NM_008141 | ENSMUSG00000009108 | Gnat2 | AW490837|Gnat-2|Gt-2|Tcalpha | guanine nucleotide binding protein, alpha transducing 2
chr6-134 | chr6 | 129491985 | 129492187 | + | 11.6 | 0.737 | 3' UTR (NM_020590, exon 4 of 4) | 3' UTR (NM_020590, exon 4 of 4) | -8784 | NR_045270 | 100504641 | Mm.398286 | NR_045270 |  | 1700101I11Rik | - | RIKEN cDNA 1700101I11 gene
chr4-91 | chr4 | 106069722 | 106069924 | + | 11.6 | 0.565 | exon (NM_183225, exon 38 of 68) | exon (NM_183225, exon 38 of 68) | 67107 | NM_153565 | 100102 | Mm.133268 | NM_153565 | ENSMUSG00000044254 | Pcsk9 | AI415265|AI747682|FH3|HCHOLA3|MGC47409|Narc1|PC9 | proprotein convertase subtilisin/kexin type 9
chr8-338 | chr8 | 106958865 | 106959067 | + | 11.6 | 0.636 | [NAME] (NM_001013380, intron 4 of 12) | [NAME] (NM_001013380, intron 4 of 12) | 7981 | NM_001013380 | 234663 | Mm.289583 | NM_001013380 | ENSMUSG00000035770 | Dync1li2 | AA409702|C920003I06|Dncli2|Dnclic2|LIC2 | [NAME], cytoplasmic 1 light intermediate chain 2
chr8-348 | chr8 | 109458245 | 109458447 | + | 11.6 | 0.731 | Intergenic | MLT2B1|LTR|ERVL | -1304 | NM_009229 | 20650 | Mm.30228 | NM_009229 | ENSMUSG00000041308 | Sntb2 | Snt2 | syntrophin, basic 2
chr6-85 | chr6 | 39396272 | 39396474 | + | 11.6 | 0.81 | Intergenic | Intergenic | -26005 | NM_018810 | 54484 | Mm.270484 | NM_018810 | ENSMUSG00000029922 | Mkrn1 | RFP | makorin, ring finger protein, 1
chr4-83 | chr4 | 45501557 | 45501759 | + | 11.6 | 0.789 | [NAME] (NM_001033306, intron 2 of 5) | [NAME] (NM_001033306, intron 2 of 5) | 42042 | NM_001033306 | 230126 | Mm.251716 | NM_001033306 | ENSMUSG00000044813 | Shb | BC028832 | src homology 2 domain-containing transforming protein B
chr12-230 | chr12 | 19198323 | 19198525 | + | 11.6 | 0.81 | Intergenic | Lx4B|LINE|L1 | 677108 | NM_001033157 | 236366 | Mm.352227 | NM_001033157 | ENSMUSG00000073197 | 5730507C01Rik | - | RIKEN cDNA 5730507C01 gene
chr5-43 | chr5 | 24108955 | 24109157 | + | 11.6 | 0.8 | Intergenic | Intergenic | -1236 | NM_025891 | 66993 | [NAME] | NM_025891 | ENSMUSG00000028949 | Smarcd3 | 1500001J14Rik|2210409C08Rik|BAF60C | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
chr11-189 | chr11 | 118918894 | 118919096 | + | 11.6 | 0.833 | Intergenic | Intergenic | -16768 | NM_013926 | 30951 | Mm.99953 | NM_013926 | ENSMUSG00000025578 | Cbx8 | Pc3 | chromobox homolog 8 (Drosophila Pc class)
chr7-62 | chr7 | 108079066 | 108079268 | + | 11.6 | 0.889 | exon (NM_001081116, exon 1 of 21) | exon (NM_001081116, exon 1 of 21) | 1508 | NM_001081116 | 207212 | Mm.29954 | NM_001081116 | ENSMUSG00000032875 | Arhgef17 | 8030463K16|AI428794|AW558066|BC035332|mKIAA0337 | Rho guanine nucleotide exchange factor (GEF) 17
chr8-321 | chr8 | 86126090 | 86126292 | + | 11.6 | 0.538 | Intergenic | PB1D10|SINE|Alu | -5883 | NM_018808 | 81489 | Mm.282092 | NM_018808 | ENSMUSG00000005483 | Dnajb1 | 0610007I11Rik|HSPF1|Hsp40 | DnaJ (Hsp40) homolog, subfamily B, member 1
chr11-180 | chr11 | 102316176 | 102316378 | + | 11.6 | 0.65 | intron (NM_010575, intron 29 of 29) | B3|SINE|B2 | -7300 | NM_199200 | 217219 | [NAME] | NM_199200 | ENSMUSG00000034685 | Fam171a2 | - | family with sequence similarity 171, member A2
chr8-320 | chr8 | 81589877 | 81590079 | + | 11.6 | 0.652 | [NAME] (NM_178267, intron 2 of 14) | [NAME] (NM_178267, intron 2 of 14) | 37642 | NM_178267 | 622675 | Mm.48724 | NM_178267 | ENSMUSG00000071064 | Zfp827 | 2810449M09Rik|D630040G17Rik|Znf827 | zinc finger protein 827
chr2-29 | chr2 | 44359922 | 44360124 | + | 11.6 | 0.85 | Intergenic | RLTR23|LTR|ERV1 | 357119 | NM_172662 | 227835 | Mm.488285 | NM_172662 | ENSMUSG00000036890 | Gtdc1 | E330008O22Rik | glycosyltransferase-like domain containing 1
chr8-278 | chr8 | 11403667 | 11403869 | + | 11.6 | 0.708 | [NAME] (NM_009932, intron 10 of 47) | [NAME] (NM_009932, intron 10 of 47) | 74731 | NM_011227 | 19332 | Mm.390014 | NM_011227 | ENSMUSG00000031504 | Rab20 | AA536966|D8Ertd350e|MGC107554 | RAB20, member RAS oncogene family
chr4-104 | chr4 | 115824014 | 115824216 | + | 11.6 | 0.8 | [NAME], intron 2 of 21) | [NAME], intron 2 of 21) | 992 | NM_026651 | 68273 | Mm.474251 | NM_026651 | ENSMUSG00000028700 | Pomgnt1 | 0610016I07Rik|4930467B06Rik | protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase
chr6-153 | chr6 | 146580963 | 146581165 | + | 11.6 | 0.667 | intron (NM_026281, intron 1 of 11) | intron (NM_026281, intron 1 of 11) | 2050 | NM_026281 | 67623 | Mm.278037 | NM_026281 | ENSMUSG00000040234 | Tm7sf3 | 2010003B14Rik|NARP1 | transmembrane 7 superfamily member 3
chr4-86 | chr4 | 101705327 | 101705529 | + | 11.6 | 0.714 | Intergenic | Intergenic | 45983 | NM_001085520 | 381536 | Mm.297685 | NM_001085520 | ENSMUSG00000078625 | Gm12789 | OTTMUSG00000008445 | predicted gene 12789
chr12-293 | chr12 | 106566137 | 106566339 | + | 11.6 | 0.783 | Intergenic | Intergenic | -8566 | NR_045047 | 69952 | Mm.158311 | NR_045047 |  | 2810011L19Rik | - | RIKEN cDNA 2810011L19 gene
chr11-183 | chr11 | 116441804 | 116442006 | + | 11.6 | 0.789 | [NAME] (NM_173755, intron 1 of 17) | [NAME] (NM_173755, intron 1 of 17) | 856 | NM_173755 | 217342 | [NAME] | NM_173755 | ENSMUSG00000020802 | Ube2o | 9630022H21|B230113M03Rik|E2-230K|mKIAA1734 | ubiquitin-conjugating enzyme E2O
chr8-283 | chr8 | 12851116 | 12851318 | + | 11.6 | 0.818 | [NAME] (NM_015804, intron 25 of 28) | [NAME] (NM_015804, intron 25 of 28) | -19298 | NR_045775 | 100504249 |  | NR_045775 |  | Gm15350 | OTTMUSG00000020611 | predicted gene 15350
chr7-61 | chr7 | 107033337 | 107033539 | + | 11.6 | 0.773 | [NAME] (NM_001164258, intron 7 of 18) | Lx8|LINE|L1 | 25710 | NM_001164258 | 446101 | Mm.440757 | NM_001164258 | ENSMUSG00000035211 | Xrra1 | AI449753 | X-ray radiation resistance associated 1
chr12-302 | chr12 | 107896725 | 107896927 | + | 11.6 | 0.682 | Intergenic | Intergenic | 57708 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr12-263 | chr12 | 99406785 | 99406987 | + | 11.6 | 0.944 | Intergenic | Intergenic | 90661 | NM_008079 | 14420 | Mm.5120 | NM_008079 | ENSMUSG00000021003 | Galc | 2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher | galactosylceramidase
chr7-53 | chr7 | 36370851 | 36371053 | + | 11.6 | 0.818 | promoter-TSS (NM_178263) | promoter-TSS (NM_178263) | -314 | NM_145633 | 245886 | Mm.272620 | NM_145633 | ENSMUSG00000034867 | Ankrd27 | AA408090|BC016493|D330003H11Rik|MGC25907|Varp | ankyrin repeat domain 27 (VPS9 domain)
chr13-35 | chr13 | 12940754 | 12940956 | + | 11.6 | 0.636 | Intergenic | Lx2A1|LINE|L1 | -48509 | NM_011118 | 18812 | Mm.457984 | NM_011118 | ENSMUSG00000056457 | Prl2c3 | MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3 | [NAME] family 2, subfamily c, member 3
chr6-98 | chr6 | 115802848 | 115803050 | + | 11.6 | 0.739 | promoter-TSS (NM_031177) | promoter-TSS (NM_031177) | 410 | NM_010774 | 17193 | Mm.259308 | NM_010774 | ENSMUSG00000030322 | [NAME] | Med1 | methyl-CpG binding domain protein 4
chr9-67 | chr9 | 119555643 | 119555845 | + | 11.6 | 0.889 | [NAME] (NM_009134, intron 15 of 27) | [NAME] (NM_009134, intron 15 of 27) | -67610 | NM_021544 | 20271 | Mm.103584 | NM_001253860 | ENSMUSG00000032511 | Scn5a | Nav1.5|Nav1.5c|SkM1|mH1 | sodium channel, voltage-gated, type V, alpha
chr6-138 | chr6 | 140491566 | 140491768 | + | 11.6 | 0.727 | [NAME] (NM_144920, intron 10 of 30) | [NAME] (NM_144920, intron 10 of 30) | -79517 | NM_178803 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr7-67 | chr7 | 140974413 | 140974615 | + | 11.6 | 0.85 | intron (NM_025850, intron 1 of 10) | intron (NM_025850, intron 1 of 10) | 5940 | NM_025850 | 66930 | Mm.87448 | NM_025850 | ENSMUSG00000053111 | Fank1 | 1700007B22Rik|AI850911 | fibronectin type 3 and ankyrin repeat domains 1
chr11-191 | chr11 | 121238855 | 121239057 | + | 11.6 | 0.789 | [NAME], intron 1 of 5) | [NAME], intron 1 of 5) | 10609 | NM_139147 | 217371 | Mm.281639 | NM_139147 | ENSMUSG00000025170 | Rab40b | SEC4L|rar | Rab40b, member RAS oncogene family
chr3-31 | chr3 | 131242248 | 131242450 | + | 11.6 | 0.714 | exon (NM_011863, exon 2 of 12) | exon (NM_011863, exon 2 of 12) | 14617 | NM_011863 | 23971 | Mm.244912 | NM_011863 | ENSMUSG00000028032 | Papss1 | AI325286|Asapk|SK1 | 3'-phosphoadenosine 5'-phosphosulfate synthase 1
chr13-43 | chr13 | 41073049 | 41073251 | + | 11.6 | 0.737 | Intergenic | Intergenic | -23229 | NM_026550 | 68083 | Mm.24789 | NM_026550 | ENSMUSG00000038683 | Pak1ip1 | 5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|MGC151106|MGC151108|PIP1 | PAK1 interacting protein 1
chr8-354 | chr8 | 113942973 | 113943175 | + | 11.6 | 0.773 | Intergenic | RMER1B|Other|Other | -25353 | NM_178086 | 338521 | Mm.41083 | NM_178086 | ENSMUSG00000033579 | Fa2h | FAAH|Faxdc1|G630055L08Rik | fatty acid 2-hydroxylase
chr8-377 | chr8 | 123994009 | 123994211 | + | 11.6 | 0.722 | Intergenic | Intergenic | 71744 | NM_029597 | 76405 | Mm.165697 | NM_029597 | ENSMUSG00000031809 | 1700018B08Rik | 1700084O22Rik | RIKEN cDNA 1700018B08 gene
chr6-120 | chr6 | 124520062 | 124520264 | + | 11.6 | 0.64 | promoter-TSS (NM_001113356) | promoter-TSS (NM_001113356) | -285 | NM_001113356 | 667277 | Mm.481484 | NM_001113356 | ENSMUSG00000092005 | C1rb | [NAME] | complement component 1, r subcomponent B
chr11-160 | chr11 | 68908360 | 68908562 | + | 11.6 | 0.6 | Intergenic | Intergenic | -3997 | NM_011065 | 18626 | Mm.7373 | NM_001159367 | ENSMUSG00000020893 | Per1 | MGC102121|Per|m-rigui|mPer1 | period homolog 1 (Drosophila)
chr14-45 | chr14 | 64771715 | 64771917 | + | 11.6 | 0.632 | intron (NM_001253714, intron 4 of 4) | intron (NM_001253714, intron 4 of 4) | 48656 | NM_028525 | 73382 | Mm.481055 | NM_028525 | ENSMUSG00000021966 | Prss52 | 1700049K14Rik|Tesp3 | protease, serine, 52
chr8-310 | chr8 | 28344457 | 28344659 | + | 11.6 | 0.762 | Intergenic | Intergenic | -4498 | NM_013462 | 11556 | Mm.278475 | NM_013462 | ENSMUSG00000031489 | Adrb3 | Adrb-3 | adrenergic receptor, beta 3
chr6-150 | chr6 | 145470431 | 145470633 | + | 11.6 | 0.684 | Intergenic | RLTR31B_Mm|LTR|ERVK | -87087 | NM_028742 | 74071 | Mm.441497 | XM_003689397 | ENSMUSG00000054966 | Ifltd1 | 4933403M22Rik|AI482300|Lmna-rs1|Lmna1 | intermediate filament tail domain containing 1
chr16-29 | chr16 | 14317003 | 14317205 | + | 11.6 | 0.81 | [NAME] (NM_025345, intron 1 of 4) | [NAME] (NM_025345, intron 1 of 4) | 321 | NM_025345 | 66086 | Mm.42072 | NM_025345 | ENSMUSG00000022677 | 0610037P05Rik | Fopnl | RIKEN cDNA 0610037P05 gene
chr7-45 | chr7 | 23948637 | 23948839 | + | 11.6 | 0.737 | intron (NR_033693, intron 1 of 2).5 | intron (NR_033693, intron 1 of 2).5 | 11958 | NR_033693 | 100043595 | Mm.463581 | NR_033693 |  | Gm4541 | - | NLR family, pyrin domain containing 4E pseudogene
chr10-53 | chr10 | 126408883 | 126409085 | + | 11.6 | 0.636 | Intergenic | Intergenic | -6789 | NM_001113470 | 52468 | Mm.29490 | NM_001113470 | ENSMUSG00000078429 | Ctdsp2 | AI586070|D10Ertd73e|MGC38258|OS-4|OS4|SCP2 | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 2
chr17-72 | chr17 | 24857010 | 24857212 | + | 11.6 | 0.941 | promoter-TSS (NR_027900) | promoter-TSS (NR_027900) | 103 | NM_008503 | 16898 | [NAME] | NM_008503 | ENSMUSG00000044533 | [NAME] | Llrep3|MGC118037|MGC118038|S4 | ribosomal protein S2
chr6-140 | chr6 | 140822439 | 140822641 | + | 11.6 | 0.762 | Intergenic | Intergenic | 249721 | NM_009637 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr1-93 | chr1 | 72431266 | 72431468 | + | 11.6 | 0.75 | [NAME] (NM_009533, intron 19 of 20) | Charlie13b|DNA|Charlie | 77372 | NM_009533 | 22596 | Mm.246952 | NM_009533 | ENSMUSG00000026187 | Xrcc5 | AI314015|Ku80|Ku86 | X-ray repair complementing defective repair in Chinese hamster cells 5
chr6-89 | chr6 | 112872192 | 112872394 | + | 11.6 | 0.9 | [NAME] (NM_080448, intron 1 of 21) | [NAME] (NM_080448, intron 1 of 21) | 24967 | [NAME] | 259302 | Mm.236401 | NM_153070 | ENSMUSG00000030257 | Srgap3 | AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411 | SLIT-ROBO Rho GTPase activating protein 3
chr12-258 | chr12 | 92913494 | 92913696 | + | 11.6 | 0.737 | [NAME] (NM_175367, intron 4 of 6) | [NAME] (NM_175367, intron 4 of 6) | -84668 | NM_175335 | 83602 | Mm.432242 | NM_031391 | ENSMUSG00000020962 | Gtf2a1 | 6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1 | general transcription factor II A, 1
chr3-26 | chr3 | 104245970 | 104246172 | + | 11.6 | 0.722 | Intergenic | Intergenic | 69708 | NM_001025067 | 269473 | Mm.34855 | NM_001025067 | ENSMUSG00000032913 | Lrig2 | 4632419I10Rik|BB096938 | leucine-rich repeats and immunoglobulin-like domains 2
chr1-111 | chr1 | 138466556 | 138466758 | + | 11.6 | 0.737 | Intergenic | Intergenic | -54821 | NM_177643 | 226442 | Mm.62521 | NM_001160251 | ENSMUSG00000041483 | Zfp281 | MGC70044|MGC7737 | zinc finger protein 281
chr8-395 | chr8 | 127819257 | 127819459 | + | 11.6 | 0.85 | Intergenic | Intergenic | 197252 | NM_001081337 | 244668 | Mm.271668 | NM_001081337 | ENSMUSG00000001995 | Sipa1l2 | BC058408|mKIAA1389 | signal-induced proliferation-associated 1 like 2
chr11-169 | chr11 | 87607338 | 87607540 | + | 11.6 | 0.833 | 5' UTR (NM_010824, exon 1 of 14) | 5' UTR (NM_010824, exon 1 of 14) | 153 | NM_010824 | 17523 | Mm.4668 | NM_010824 | ENSMUSG00000009350 | [NAME] | KIAA4033|mKIAA4033 | myeloperoxidase
chr4-92 | chr4 | 106235045 | 106235247 | + | 11.6 | 0.522 | [NAME] (NM_053272, intron 1 of 8) | [NAME] (NM_053272, intron 1 of 8) | 1503 | NM_053272 | 74754 | Mm.133370 | NM_053272 | [NAME] | Dhcr24 | 2310076D10Rik|5830417J06Rik|mKIAA0018 | 24-dehydrocholesterol reductase
chr17-69 | chr17 | 12232134 | 12232336 | + | 11.6 | 0.75 | intron (NM_016694, intron 10 of 11) | intron (NM_016694, intron 10 of 11) | -79915 | NM_026644 | 68262 | Mm.258300 | NM_026644 | ENSMUSG00000023827 | Agpat4 | 1500003P24Rik | 1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)
chr10-49 | chr10 | 105012379 | 105012581 | + | 11.6 | 0.7 | promoter-TSS (NM_177368) | promoter-TSS (NM_177368) | 873 | NR_038032 | 327812 | Mm.191660 | NR_038032 |  | Gm15663 | 9330159K06|OTTMUSG00000025047 | predicted gene 15663
chr4-135 | chr4 | 154410915 | 154411117 | + | 11.6 | 0.778 | Intergenic | Intergenic | -25923 | NM_175556 | 269615 | Mm.379458 | NM_001113360 | ENSMUSG00000029055 | Plch2 | A930027K05Rik|PLCeta2|Plc-eta2|Plcl4 | phospholipase C, eta 2
chr5-52 | chr5 | 115854821 | 115855023 | + | 11.6 | 0.714 | Intergenic | Intergenic | -24772 | NM_008629 | 17690 | Mm.5077 | NM_008629 | ENSMUSG00000054256 | Msi1 | Msi1h|Musahi1|m-Msi-1 | Musashi homolog 1(Drosophila)
chrX-29 | chrX | 148777276 | 148777478 | + | 11.6 | 0.667 | promoter-TSS (NM_029836) | promoter-TSS (NM_029836) | -350 | NM_029836 | 52808 | Mm.9997 | NM_145936 | ENSMUSG00000041096 | Tspyl2 | CINAP|DENTT|DXBwg1396e|DXHXS1008E|E130307F10Rik|MGC40973 | TSPY-like 2
chr12-364 | chr12 | 114226172 | 114226374 | + | 11.6 | 0.609 | exon (NM_028193, exon 3 of 18) | exon (NM_028193, exon 3 of 18) | 11499 | NM_201646 | 399566 | [NAME] | NM_001145900 | ENSMUSG00000002803 | [NAME] | - | BTB (POZ) domain containing 6
chr9-58 | chr9 | 63896286 | 63896488 | + | 11.6 | 0.75 | Intergenic | 5S|rRNA|rRNA | -1249 | NR_040713 | 68697 |  | NR_040713 |  | 1110036E04Rik | - | RIKEN cDNA 1110036E04 gene
chr9-62 | chr9 | 106062192 | 106062394 | + | 11.6 | 0.727 | Intergenic | CpG | -1824 | NM_174846 | 235582 | Mm.335420 | NM_001039586 | ENSMUSG00000020258 | Glyctk | 6230410P16Rik|C430006L12 | glycerate kinase
chr8-330 | chr8 | 93678023 | 93678225 | + | 11.6 | 0.714 | Intergenic | Intergenic | -18729 | NM_010241 | 14339 | Mm.324588 | NM_010241 | ENSMUSG00000031667 | Aktip | AL023020|Fif|Ft|Ft1|Fts | thymoma viral proto-oncogene 1 interacting protein
chr6-95 | chr6 | 114852329 | 114852531 | + | 11.6 | 0.714 | [NAME] (NM_177683, intron 1 of 4) | [NAME] (NM_177683, intron 1 of 4) | 19340 | NM_177683 | 232334 | Mm.446323 | NM_177683 | ENSMUSG00000030315 | [NAME] | BC048841|MGC54805|VGL-4 | vestigial like 4 (Drosophila)
chr11-150 | chr11 | 8466374 | 8466576 | + | 11.6 | 0.682 | [NAME] (NM_001083587, intron 4 of 30) | B3|SINE|B2 | 98063 | NM_001083587 | 319939 | Mm.337820 | NM_001083587 | ENSMUSG00000020422 | Tns3 | BC023928|F830010I22Rik|TEM6|Tens1 | tensin 3
chr6-110 | chr6 | 120414242 | 120414444 | + | 11.6 | 0.842 | [NAME] (NM_008359, intron 1 of 12) | [NAME] (NM_008359, intron 1 of 12) | 1128 | NM_008359 | 16172 | Mm.4481 | NM_008359 | ENSMUSG00000002897 | Il17ra | AW538159|Cdw217|Il17r|VDw217 | interleukin 17 receptor A
chr5-47 | chr5 | 67845402 | 67845604 | + | 11.6 | 0.789 | Intergenic | B4A|SINE|B4 | -9634 | NR_015582 | 320479 | Mm.387187 | NR_015582 |  | C330024D21Rik | - | RIKEN cDNA C330024D21 gene
chr8-274 | chr8 | 8743740 | 8743942 | + | 11.6 | 0.789 | Intergenic | B1_Mus1|SINE|Alu | -53304 | NM_176849 | 234023 | Mm.251655 | NM_176849 | ENSMUSG00000040459 | Arglu1 | 9430010O03Rik|C130008N12 | arginine and glutamate rich 1
chr8-334 | chr8 | 97645032 | 97645234 | + | 11.6 | 0.765 | [NAME] (NM_010631, intron 3 of 19) | [NAME] (NM_010631, intron 3 of 19) | -7891 | NM_001145832 | 16582 | Mm.378951 | NM_001145831 | ENSMUSG00000031788 | [NAME] | AI325457|BB123200 | [NAME] member [NAME]
[NAME] | chr14 | 33271776 | 33271978 | + | 11.6 | 0.818 | 5' UTR (NM_009891, exon 3 of 16) | 5' UTR (NM_009891, exon 3 of 16) | 6159 | NM_021712 | 20508 | [NAME] | NM_021712 |  | Slc18a3 | VAChT|VAT | solute carrier family 18 (vesicular monoamine), member 3
chr2-34 | chr2 | 129004368 | 129004570 | + | 11.6 | 0.8 | non-coding (NR_045264, exon 3 of 3) | non-coding (NR_045264, exon 3 of 3) | 1940 | NR_045264 | 100048701 | Mm.428544 | NR_045264 |  | AI847159 | OTTMUSG00000015420 | expressed sequence AI847159
chr15-33 | chr15 | 85865444 | 85865646 | + | 11.6 | 0.682 | Intergenic | Intergenic | -1338 | NM_009886 | 12614 | Mm.22680 | NM_009886 | ENSMUSG00000016028 | Celsr1 | Crsh|Scy|crash | cadherin, EGF LAG seven-pass G-type receptor 1 (flamingo homolog, Drosophila)
chr3-23 | chr3 | 90096894 | 90097096 | + | 11.6 | 0.778 | Intergenic | Intergenic | 26539 | NM_201407 | 229541 | Mm.30571 | NM_201407 | ENSMUSG00000042404 | Dennd4b | BC026996|mKIAA0476 | DENN/MADD domain containing 4B
chr15-34 | chr15 | 98447713 | 98447915 | + | 11.6 | 0.714 | Intergenic | Intergenic | -9750 | NM_007405 | 11512 | Mm.157091 | NM_007405 | ENSMUSG00000022994 | Adcy6 | mKIAA0422 | adenylate cyclase 6
chr4-82 | chr4 | 35104049 | 35104251 | + | 11.6 | 0.8 | [NAME] 3) | [NAME] 3) | 583 | NM_178061 | 214944 | Mm.317573 | NM_178061 | ENSMUSG00000073910 | Mob3b | 8430436F23Rik|A430018A01Rik|MGC28259|Mobkl2b | MOB kinase activator 3B
chr8-393 | chr8 | 127141205 | 127141407 | + | 11.6 | 0.556 | [NAME] (NM_023709, intron 18 of 19) | [NAME] (NM_023709, intron 18 of 19) | 41295 | NM_023709 | 73647 | Mm.6209 | NM_023709 | [NAME] | Capn9 | 2200003B16Rik|GC36|nCL-4|nCL4 | calpain 9
chr16-36 | chr16 | 35770139 | 35770341 | + | 11.6 | 0.75 | promoter-TSS (NM_175111) | promoter-TSS (NM_175111) | -232 | NM_175111 | 66667 | Mm.45272 | NM_175111 | [NAME] | Hspbap1 | 3830421G21Rik | Hspb associated protein 1
chr12-238 | chr12 | 87126048 | 87126250 | + | 11.6 | 0.727 | intron (NM_145447, intron 2 of 9) | intron (NM_145447, intron 2 of 9) | 38660 | NM_145447 | 217721 | Mm.301076 | NM_145447 | ENSMUSG00000034258 | Mfsd7c | CCT|Flvcr2|MGC19050 | major facilitator superfamily domain containing 7C
chr4-126 | chr4 | 133285847 | 133286049 | + | 11.6 | 0.682 | [NAME] (NM_001080819, intron 1 of 19) | [NAME] (NM_001080819, intron 1 of 19) | 23578 | NM_001080819 | 93760 | Mm.22478 | NM_001080819 | ENSMUSG00000007880 | Arid1a | 1110030E03Rik|BAF250a|Osa1|Smarcf1 | AT rich interactive domain 1A (SWI-like)
chr8-326 | chr8 | 87322382 | 87322584 | + | 11.6 | 0.8 | intron (NM_010906, intron 1 of 8) | intron (NM_010906, intron 1 of 8) | 1756 | NM_010906 | 18032 | Mm.9394 | NM_001081981 | ENSMUSG00000001911 | Nfix | - | nuclear factor I/X
chr6-139 | chr6 | 140661421 | 140661623 | + | 11.6 | 0.75 | Intergenic | Intergenic | 88703 | NM_009637 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr15-32 | chr15 | 82168269 | 82168471 | + | 11.6 | 0.727 | [NAME] (NM_008669, intron 2 of 9) | [NAME] (NM_008669, intron 2 of 9) | 886 | NM_008669 | 17939 | Mm.20325 | NM_008669 | ENSMUSG00000022453 | Naga | - | N-acetyl galactosaminidase, alpha
chr6-146 | chr6 | 145046914 | 145047116 | + | 11.6 | 0.739 | Intergenic | Intergenic | -22338 | NM_007532 | 12035 | Mm.4606 | NM_001024468 | ENSMUSG00000030268 | [NAME] | BCATc|Eca39 | branched chain aminotransferase 1, cytosolic
chr17-96 | chr17 | 88656673 | 88656875 | + | 11.6 | 0.833 | Intergenic | Intergenic | 131922 | NM_001190356 | 225058 | Mm.312053 | NM_001190356 |  | [NAME] | EG225058 | predicted gene 4832
chr9-56 | chr9 | 46743523 | 46743725 | + | 11.6 | 0.8 | Intergenic | LTR16A1|LTR|ERVL | 21938 | NR_015605 | 73040 | Mm.265384 | NR_015605 |  | 2900052N01Rik | AU067665 | RIKEN cDNA 2900052N01 gene
chr8-290 | chr8 | 18897152 | 18897354 | + | 11.6 | 0.737 | Intergenic | MTC-int|LTR|MaLR | 50974 | NM_026792 | 52123 | Mm.24117 | NM_026792 | ENSMUSG00000031467 | Agpat5 | 1110013A05Rik|D8Ertd319e | 1-acylglycerol-3-phosphate O-acyltransferase 5 (lysophosphatidic acid acyltransferase, epsilon)
chr8-313 | chr8 | 73197088 | 73197290 | + | 11.6 | 0.81 | promoter-TSS (NM_015816) | promoter-TSS (NM_015816) | 59 | NM_015816 | 50783 | Mm.248188 | NM_015816 | ENSMUSG00000031848 | Lsm4 | - | LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)
chr8-277 | chr8 | 11084183 | 11084385 | + | 11.6 | 0.8 | Intergenic | Intergenic | -75854 | [NAME] | 384783 | Mm.407207 | [NAME] | ENSMUSG00000038894 | Irs2 | Irs-2 | insulin receptor substrate 2
chr10-36 | chr10 | 67559307 | 67559509 | + | 11.6 | 0.692 | exon (NM_023598, exon 10 of 10) | exon (NM_023598, exon 10 of 10) | 117062 | NM_001081346 | 170799 | Mm.209844 | NM_001081346 | ENSMUSG00000037846 | Rtkn2 | B130039D23Rik|MGC189880|Mbf|Plekhk1 | rhotekin 2
chr11-186 | chr11 | 117128013 | 117128215 | + | 11.6 | 0.85 | intron (NM_001113487, intron 1 of 10) | intron (NM_001113487, intron 1 of 10) | 554 | NM_001113487 | 53860 | Mm.38450 | NM_001113486 | ENSMUSG00000059248 | 2013-09-09 00:00:00 | MSF1|Msf|PNUTL4|Sint1 | septin 9
chr5-56 | chr5 | 128120699 | 128120901 | + | 11.6 | 0.762 | intron (NM_177005, intron 1 of 11) | intron (NM_177005, intron 1 of 11) | 8168 | NM_177005 | 319804 | Mm.237888 | NM_177005 | ENSMUSG00000049971 | Glt1d1 | 5730455A04Rik | glycosyltransferase 1 domain containing 1
[NAME] | chr11 | 118916813 | 118917015 | + | 11.6 | 0.778 | Intergenic | Intergenic | -14687 | NM_013926 | 30951 | Mm.99953 | NM_013926 | ENSMUSG00000025578 | Cbx8 | Pc3 | chromobox homolog 8 (Drosophila Pc class)
chr17-75 | chr17 | 29063521 | 29063723 | + | 11.6 | 0.625 | Intergenic | Intergenic | -11353 | NM_172450 | 207819 | Mm.248931 | NM_172450 | ENSMUSG00000048905 | 4930539E08Rik | 9130014G02 | RIKEN cDNA 4930539E08 gene
chr4-102 | chr4 | 115546090 | 115546292 | + | 11.6 | 0.593 | [NAME] (NM_021461, intron 9 of 12) | [NAME] (NM_021461, intron 9 of 12) | -10814 | NM_001039124 | 654462 | Mm.388913 | NM_001039124 | ENSMUSG00000073774 | [NAME] | Kino|L5 | kinocilin
chr6-128 | chr6 | 126594426 | 126594628 | + | 11.6 | 0.833 | 5' UTR (NM_010595, exon 1 of 2) | 5' UTR (NM_010595, exon 1 of 2) | 1292 | NM_010595 | 16485 | Mm.40424 | NM_010595 | ENSMUSG00000047976 | Kcna1 | AI840627|Kca1-1|Kv1.1|MBK1|MGC124402|Mk-1|Shak|mceph | potassium voltage-gated channel, shaker-related subfamily, member 1
chr3-28 | chr3 | 130549797 | 130549999 | + | 11.6 | 0.611 | Intergenic | Intergenic | -116651 | NM_001199350 | 619547 | Mm.391636 | NM_001199350 |  | Rpl34-ps1 | EG619547|ENSMUSG00000068396|Gm10239|MGC103270|MGC117759 | ribosomal protein L34, pseudogene 1
chr6-88 | chr6 | 52155308 | 52155510 | + | 11.6 | 0.833 | promoter-TSS (NM_010453) | promoter-TSS (NM_010453) | -823 | NM_010453 | 15402 | Mm.173 | NM_010453 | ENSMUSG00000038253 | Hoxa5 | Hox-1.3 | homeobox A5
chr14-49 | chr14 | 98566438 | 98566640 | + | 11.6 | 0.63 | [NAME] (NM_001038610, intron 1 of 10) | [NAME] (NM_001038610, intron 1 of 10) | 2223 | NM_001038610 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr7-65 | chr7 | 134339368 | 134339570 | + | 11.6 | 0.538 | promoter-TSS (NM_027353) | promoter-TSS (NM_027353) | 45 | NM_027353 | 70233 | Mm.28050 | NM_027353 | [NAME] | Cd2bp2 | 1500011B02Rik|2410024K20Rik|AW048183 | CD2 antigen (cytoplasmic tail) binding protein 2
chr4-127 | chr4 | 134335329 | 134335531 | + | 11.6 | 0.737 | Intergenic | Intergenic | -11511 | NM_145554 | 100017 | Mm.482148 | NM_145554 | ENSMUSG00000037295 | Ldlrap1 | AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2 | low density lipoprotein receptor adaptor protein 1
chr8-286 | chr8 | 13549101 | 13549303 | + | 11.6 | 0.643 | Intergenic | Intergenic | 13246 | NM_025601 | 66501 | Mm.46136 | NM_001080781 | ENSMUSG00000031452 | 1700029H14Rik | - | RIKEN cDNA 1700029H14 gene
chr9-66 | chr9 | 114309984 | 114310186 | + | 11.6 | 0.667 | promoter-TSS (NM_001200002) | promoter-TSS (NM_001200002) | -128 | NM_001200002 | 100504715 | Mm.290516 | NM_001200002 |  | [NAME] | - | [NAME] with metallophosphoesterase domain
chrX-26 | chrX | 135448000 | 135448202 | + | 11.6 | 0.737 | promoter-TSS (NM_013724) | promoter-TSS (NM_013724) | -868 | NM_013724 | 27206 | Mm.482319 | NM_013724 | ENSMUSG00000052854 | [NAME] | AA407323|AA409510|AI225895|AV168563|AW538185|Nesk | [NAME] related kinase
chr8-282 | chr8 | 11960036 | 11960238 | + | 11.6 | 0.652 | Intergenic | RLTR42-int|LTR|ERVK | 119616 | NM_029326 | 75528 | Mm.440342 | NM_029326 | ENSMUSG00000031512 | 1700018L24Rik | TEX29 | RIKEN cDNA 1700018L24 gene
chr12-372 | chr12 | 114720490 | 114720692 | + | 11.6 | 0.667 | Intergenic | Intergenic | -7185 | NM_001009545 | 238405 | Mm.442216 | NM_001009545 | ENSMUSG00000051804 | Adam6b | 4930523C11Rik | a disintegrin and metallopeptidase domain 6B
chr12-300 | chr12 | 107496194 | 107496396 | + | 11.6 | 0.762 | Intergenic | Intergenic | 189581 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr8-375 | chr8 | 123760061 | 123760263 | + | 11.6 | 0.789 | Intergenic | Intergenic | 108577 | NM_008024 | 14241 | Mm.5111 | NM_008024 |  | Foxl1 | FREAC7|Fkh6|fkh-6 | forkhead box L1
chr12-229 | chr12 | 12949019 | 12949221 | + | 11.6 | 0.789 | promoter-TSS (NM_008709) | promoter-TSS (NM_008709) | -478 | NM_008709 | 18109 | Mm.16469 | NM_008709 | ENSMUSG00000037169 | Mycn | N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc | v-myc myelocytomatosis viral related oncogene, neuroblastoma derived (avian)
chr7-42 | chr7 | 13623690 | 13623892 | + | 11.6 | 0.636 | promoter-TSS (NM_145578) | promoter-TSS (NM_145578) | -167 | NM_001168469 | 22192 | Mm.196580 | NM_001168469 | ENSMUSG00000005575 | Ube2m | 2510040H03Rik|MGC25453|MGC37197|UBC12|Ubc-rs2 | ubiquitin-conjugating enzyme [NAME]
chr8-401 | chr8 | 130344837 | 130345039 | + | 11.6 | 0.842 | Intergenic | Intergenic | 521386 | NM_001013580 | 93742 | Mm.299254 | NM_001013580 | ENSMUSG00000025812 | Pard3 | AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3|Pard3a | par-3 (partitioning defective 3) homolog (C. elegans)
chr4-89 | chr4 | 104868411 | 104868613 | + | 11.6 | 0.667 | [NAME], intron 2 of 5) | MTD|LTR|MaLR | 38560 | NM_080555 | 67916 | Mm.348326 | NM_080555 | ENSMUSG00000028517 | Ppap2b | 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b | phosphatidic acid phosphatase type 2B
chr9-53 | chr9 | 26837735 | 26837937 | + | 11.6 | 0.833 | promoter-TSS (NM_178113) | promoter-TSS (NM_178113) | 76 | NM_178113 | 78658 | Mm.251777 | NM_178113 | ENSMUSG00000035024 | Ncapd3 | 2810487N22Rik|4632407J06Rik|AI195468|AU018739|B130055D15Rik|mKIAA0056 | [NAME] condensin II complex, subunit D3
chr5-46 | chr5 | 65675539 | 65675741 | + | 11.6 | 0.85 | [NAME] (NM_011258, intron 12 of 24) | B3A|SINE|B2 | 51238 | NM_011258 | 19687 | Mm.148877 | NM_011258 | ENSMUSG00000029191 | Rfc1 | 140kDa|Alp145|MGC96526|RFC140|Recc1 | replication factor C (activator 1) 1
chr16-27 | chr16 | 8637665 | 8637867 | + | 11.6 | 0.789 | promoter-TSS (NM_016881) | promoter-TSS (NM_016881) | 28 | NM_025708 | 66690 | [NAME] | NM_025708 | ENSMUSG00000043140 | Tmem186 | 2810440M13Rik|4432406C05Rik|AI648175|AW210586 | [NAME] 186
chr8-351 | chr8 | 112826411 | 112826613 | + | 11.6 | 0.833 | intron (NM_172916, intron 4 of 86) | B4A|SINE|B4 | 35635 | NM_172916 | 244653 | Mm.488112 | NM_172916 | ENSMUSG00000059854 | [NAME] | 1700034M11Rik|4930545D19Rik|4932703P14|A830061H17|AC069308.21gm4|hy-3|hy3|hyrh | HYDIN, axonemal central pair apparatus protein
chr6-83 | chr6 | 29698801 | 29699003 | + | 11.6 | 0.941 | intron (NM_176996, intron 1 of 11) | (CTGTG)n|Simple_repeat|Simple_repeat | 13405 | NM_176996 | 319757 | Mm.29279 | NM_176996 | ENSMUSG00000001761 | [NAME] | E130215L21Rik|Smoh|bnb|smoothened | smoothened homolog (Drosophila)
chr10-45 | chr10 | 84590764 | 84590966 | + | 11.6 | 0.727 | promoter-TSS (NM_028832) | promoter-TSS (NM_028832) | -93 | NM_028832 | 74238 | Mm.255401 | NM_028832 | ENSMUSG00000049038 | Mterfd3 | 1700007D05Rik|Mterf2 | MTERF domain containing 3
chr14-46 | chr14 | 66452150 | 66452352 | + | 11.6 | 0.882 | [NAME] (NM_028039, intron 1 of 10) | [NAME] (NM_028039, intron 1 of 10) | 555 | NM_028039 | 71988 | [NAME] | NM_028039 | ENSMUSG00000022034 | Esco2 | 2410004I17Rik|D030072L07Rik | establishment of cohesion 1 homolog 2 (S. cerevisiae)
chr4-119 | chr4 | 120887852 | 120888054 | + | 11.6 | 0.714 | Intergenic | Intergenic | -26814 | NM_001081013 | 109263 | [NAME] | NM_001081013 | ENSMUSG00000049878 | Rlf | 9230110M18Rik|AI195322 | rearranged L-myc fusion sequence
chr1-117 | chr1 | 184082006 | 184082208 | + | 11.6 | 0.773 | Intergenic | Lx|LINE|L1 | 6122 | NM_001166728 | 625823 | Mm.479992 | NM_001166728 | ENSMUSG00000091013 | Vmn1r1 | EG625823|Gm6628 | vomeronasal 1 receptor 1
chr17-86 | chr17 | 35579446 | 35579648 | + | 11.6 | 0.722 | [NAME] (NM_001198560, intron 4 of 5) | [NAME] (NM_001198560, intron 4 of 5) | 3435 | NM_001201460 | 110558 | Mm.431282 | NM_001201460 | ENSMUSG00000060550 | H2-Q9 | H-2Q9|MGC155791|Ped|Qa-2|Qa-9|Qa9 | histocompatibility 2, Q region locus 9
chr10-51 | chr10 | 116872378 | 116872580 | + | 11.6 | 0.696 | Intergenic | Intergenic | -58450 | NM_001013391 | 432508 | Mm.479892 | NM_001013391 | ENSMUSG00000055531 | Cpsf6 | 4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7 | cleavage and polyadenylation specific factor 6
chr6-131 | chr6 | 128518509 | 128518711 | + | 11.6 | 0.789 | intron (NM_001001179, intron 12 of 35) | intron (NM_001001179, intron 12 of 35) | 13014 | NM_001001179 | 232400 | [NAME] | NM_001001179 | ENSMUSG00000047228 | BC048546 | MGC58520|Ovos | cDNA sequence BC048546
chr5-49 | chr5 | 114603371 | 114603573 | + | 11.6 | 0.75 | Intergenic | PB1D7|SINE|Alu | -12055 | NM_133904 | 100705 | Mm.81793 | NM_133904 | ENSMUSG00000042010 | Acacb | AI597064|AW743042|Acc2|Accb | acetyl-Coenzyme A carboxylase beta
chr8-356 | chr8 | 116740626 | 116740828 | + | 11.6 | 0.895 | [NAME]NM_173016, intron 1 of 8) | B1F1|SINE|Alu | 11187 | NM_173016 | 270097 | Mm.334825 | NM_173016 | ENSMUSG00000046844 | Vat1l | 9430073I07|AI427515|mKIAA1576 | vesicle amine transport protein 1 homolog-like (T. californica)
chr12-268 | chr12 | 101153504 | 101153706 | + | 11.6 | 0.591 | intron (NM_028354, intron 12 of 15) | intron (NM_028354, intron 12 of 15) | 30880 | NM_028354 | 104884 | Mm.488658 | NM_028354 | ENSMUSG00000021177 | Tdp1 | 2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1 | tyrosyl-DNA phosphodiesterase 1
chr8-339 | chr8 | 107122527 | 107122729 | + | 11.6 | 0.882 | Intergenic | Intergenic | 7260 | NM_001024606 | 382051 | Mm.290750 | NM_001024606 | ENSMUSG00000048371 | Pdp2 | 4833426J09Rik|Gm1705|KIAA1348|mKIAA1348 | pyruvate dehyrogenase phosphatase catalytic subunit 2
chr4-133 | chr4 | 151313503 | 151313705 | + | 11.6 | 0.714 | [NAME] (NM_172704, intron 1 of 15) | [NAME] (NM_172704, intron 1 of 15) | 5775 | NM_172704 | 230935 | Mm.21353 | NM_172704 | ENSMUSG00000039768 | Dnajc11 | E030019A03Rik | DnaJ (Hsp40) homolog, subfamily C, member 11
chr12-284 | chr12 | 104747945 | 104748147 | + | 11.6 | 0.714 | Intergenic | Intergenic | -22729 | NM_028980 | 74521 | Mm.248619 | NM_028980 | ENSMUSG00000021209 | Ppp4r4 | 8430415E04Rik|mKIAA1622 | protein phosphatase 4, regulatory subunit 4
chr17-82 | chr17 | 31957274 | 31957476 | + | 11.6 | 0.727 | Intergenic | Intergenic | 35362 | NM_010831 | 17691 | Mm.290941 | NM_010831 | ENSMUSG00000024042 | Sik1 | [NAME] | salt inducible kinase 1
chr8-391 | chr8 | 126544444 | 126544646 | + | 11.6 | 0.706 | [NAME] (NM_133966, intron 1 of 4) | [NAME] (NM_133966, intron 1 of 4) | 664 | NM_133966 | 102162 | Mm.291777 | NM_133966 | ENSMUSG00000038697 | Taf5l | 1110005N04Rik|AI849020 | TAF5-like RNA polymerase II, p300/CBP-associated factor (PCAF)-associated factor
chr14-53 | chr14 | 99162258 | 99162460 | + | 11.6 | 0.8 | Intergenic | L1_Mus4|LINE|L1 | 282996 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr19-25 | chr19 | 6229151 | 6229353 | + | 11.6 | 0.882 | exon (NM_198168, exon 12 of 14) | exon (NM_198168, exon 12 of 14) | 2851 | NM_130453 | 170458 | Mm.379306 | NM_130453 | ENSMUSG00000024784 | Gpha2 | GPA2|zsig51 | [NAME] alpha 2
chr8-318 | chr8 | 80672296 | 80672498 | + | 11.6 | 0.762 | Intergenic | Intergenic | -64844 | NM_183096 | 73301 | Mm.61243 | NM_183096 | ENSMUSG00000037101 | Ttc29 | 1700031F13Rik | tetratricopeptide repeat domain 29
chr11-166 | chr11 | 78564776 | 78564978 | + | 11.6 | 0.737 | exon (NM_197989, exon 1 of 1) | exon (NM_197989, exon 1 of 1) | 354 | NM_197989 | 69109 | Mm.341420 | NM_197989 | ENSMUSG00000049489 | Fam58b | 1810009O10Rik|Fam58a | family with sequence similarity 58, member B
chr6-105 | chr6 | 118771872 | 118772074 | + | 11.6 | 0.833 | [NAME] (NM_001256002, intron 3 of 47) | [NAME] (NM_001256002, intron 3 of 47) | -58203 | NR_046053 | 74363 | Mm.399403 | NR_046053 |  | 4931430N09Rik | - | RIKEN cDNA 4931430N09 gene
chr12-325 | chr12 | 111476052 | 111476254 | + | 11.6 | 0.7 | Intergenic | Intergenic | 40125 | NR_002866 | 353504 | Mm.479394 | NR_002866 |  | Dio3os | AW556460|Dio3as | deiodinase, iodothyronine type III, opposite strand
chr8-335 | chr8 | 102230997 | 102231199 | + | 11.6 | 0.842 | Intergenic | Lx4B|LINE|L1 | -290741 | NM_001039154 | 12564 | [NAME] | NM_001039154 | ENSMUSG00000036510 | [NAME] | AI851472|cad8 | cadherin 8
chr12-304 | chr12 | 108367945 | 108368147 | + | 11.6 | 0.789 | Intergenic | Intergenic | -413512 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr8-346 | chr8 | 108282619 | 108282821 | + | 11.6 | 0.8 | promoter-TSS (NM_027469) | promoter-TSS (NM_027469) | -213 | NM_027469 | 70575 | Mm.40954 | NM_027469 | ENSMUSG00000013150 | Gfod2 | 5730466C23Rik | glucose-fructose oxidoreductase domain containing 2
chr6-132 | chr6 | 128686343 | 128686545 | + | 11.6 | 0.778 | Intergenic | Intergenic | -13380 | NM_001099918 | 100043861 | Mm.66911 | NM_001099918 | ENSMUSG00000079299 | 4930431A04Rik | [NAME]g | RIKEN cDNA 4930431A04 gene
chr12-245 | chr12 | 88119945 | 88120147 | + | 11.6 | 0.667 | Intergenic | B3A|SINE|B2 | 44727 | NM_001195767 | 627607 | Mm.341880 | NM_001195767 | ENSMUSG00000059114 | Gm6772 | EG627607 | predicted gene 6772
chr11-182 | chr11 | 104133252 | 104133454 | + | 11.6 | 0.778 | [NAME], intron 1 of 11) | [NAME], intron 1 of 11) | 40603 | NM_010838 | 17762 | [NAME] | NM_010838 | ENSMUSG00000018411 | Mapt | AI413597|AW045860|Mtapt|Tau | microtubule-associated protein tau
chr3-24 | chr3 | 90177515 | 90177717 | + | 11.6 | 0.833 | Intergenic | Intergenic | 16233 | NM_011988 | 26568 | Mm.45519 | NM_011988 | ENSMUSG00000027932 | Slc27a3 | Acsvl3|FATP3|Vlcs-3 | solute carrier family 27 (fatty acid transporter), member 3
chr8-362 | chr8 | 122078420 | 122078622 | + | 11.6 | 0.85 | intron (NM_019709, intron 1 of 23) | B1_Mur2|SINE|Alu | 4140 | NM_001167910 | 56453 | Mm.206934 | NM_001167910 | ENSMUSG00000031835 | Mbtps1 | 0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091 | membrane-bound transcription factor peptidase, site 1
chr8-306 | chr8 | 26253572 | 26253774 | + | 11.6 | 0.833 | Intergenic | Intergenic | -41390 | NM_031257 | 83436 | Mm.261122 | NM_031257 | ENSMUSG00000031557 | Plekha2 | 6430512N22Rik|AI851530|AU041791|TAPP2|W91773 | pleckstrin homology domain-containing, family A (phosphoinositide binding specific) member 2
chr10-32 | chr10 | 59078158 | 59078360 | + | 11.6 | 0.8 | intron (NM_001033259, intron 1 of 7) | intron (NM_001033259, intron 1 of 7) | 1181 | NM_001033259 | 215999 | Mm.482229 | NM_001033259 | ENSMUSG00000009647 | Ccdc109a | 2010012O16Rik|AV064928|C10orf42|D130073L02Rik|Gm64|Mcu | coiled-coil domain containing 109A
chr19-29 | chr19 | 9974124 | 9974326 | + | 11.6 | 0.619 | promoter-TSS (NM_016692) | promoter-TSS (NM_016692) | -202 | NM_016692 | 16319 | Mm.29755 | NM_016692 | ENSMUSG00000024660 | Incenp | 2700067E22Rik|AU019509|C130081E20|C77457 | inner centromere protein
chr6-92 | chr6 | 113555325 | 113555527 | + | 11.6 | 0.75 | [NAME] intron 1 of 2) | [NAME] intron 1 of 2) | 660 | [NAME] | 101314 | Mm.485793 | [NAME] | ENSMUSG00000033940 | 6720456B07Rik | [NAME] | RIKEN cDNA 6720456B07 gene
chr12-275 | chr12 | 103184977 | 103185179 | + | 11.6 | 0.8 | [NAME] (NM_029705, intron 3 of 10) | [NAME] (NM_029705, intron 3 of 10) | 11375 | NM_029705 | 110616 | Mm.485508 | NM_001167914 | ENSMUSG00000021189 | Atxn3 | 2210008M02Rik|AI463012|AI647473|ATX3|MJD1|Mjd|Sca3|ataxin-3 | ataxin 3
chr12-255 | chr12 | 89947807 | 89948009 | + | 11.6 | 0.75 | Intergenic | Intergenic | -13412 | NM_001198587 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr6-151 | chr6 | 145916620 | 145916822 | + | 11.6 | 0.769 | Intergenic | Intergenic | 34054 | NM_010656 | 16651 | Mm.49689 | NM_010656 | ENSMUSG00000030255 | Sspn | Krag | sarcospan
chrX-28 | chrX | 147247569 | 147247771 | + | 11.6 | 0.696 | [NAME], intron 1 of 12) | CpG | 576 | NM_001199246 | 80884 | [NAME] | XM_003689465 | ENSMUSG00000025268 | Maged2 | 4833439A22Rik|Mage-d2|ORF1 | melanoma antigen, family D, 2
chr13-46 | chr13 | 57628092 | 57628294 | + | 11.6 | 0.722 | [NAME] (NM_001166464, intron 6 of 10) | [NAME] (NM_001166464, intron 6 of 10) | 381500 | NM_009262 | 20745 | Mm.379020 | NM_001166463 | ENSMUSG00000056222 | Spock1 | Spock|Ticn1|testican | sparc/osteonectin, cwcv and [NAME]-like domains proteoglycan 1
chr6-135 | chr6 | 134878538 | 134878740 | + | 11.6 | 0.833 | promoter-TSS (NR_037955) | promoter-TSS (NR_037955) | -471 | NR_037956 | 381822 | Mm.5935 | NR_037955 |  | 1190002F15Rik | AI120476 | RIKEN cDNA 1190002F15 gene
chr6-108 | chr6 | 119447079 | 119447281 | + | 11.6 | 0.667 | [NAME] (NM_009525, intron 1 of 4) | [NAME] (NM_009525, intron 1 of 4) | 17494 | NM_133940 | 101358 | Mm.125477 | NM_133940 | ENSMUSG00000030019 | Fbxl14 | AW322056|Fbx14l | F-box and leucine-rich repeat protein 14
chr8-287 | chr8 | 13635705 | 13635907 | + | 11.6 | 0.889 | [NAME] (NM_009025, intron 1 of 23) | ORR1C1|LTR|MaLR | 41781 | NM_009025 | 19414 | [NAME] | NM_009025 | ENSMUSG00000031453 | Rasa3 | AI326412|C86362|E130011G04|GAPIII | RAS p21 protein activator 3
chr3-32 | chr3 | 132230838 | 132231040 | + | 11.6 | 0.708 | Intergenic | Intergenic | 115904 | NM_007926 | 13722 | Mm.235137 | NM_007926 | ENSMUSG00000028029 | Aimp1 | 9830137A06Rik|AIMP1/p43|EMAPII|Emap2|Scye1|p43 | aminoacyl tRNA synthetase complex-interacting multifunctional protein 1
chr13-44 | chr13 | 54667063 | 54667265 | + | 11.6 | 0.652 | promoter-TSS (NM_001252645) | promoter-TSS (NM_001252645) | -421 | NM_133797 | 97820 | Mm.489745 | NM_001252645 | ENSMUSG00000025871 | 4833439L19Rik | 4930558H15Rik|C81457|Kiaa1191 | RIKEN cDNA 4833439L19 gene
chr2-33 | chr2 | 121782311 | 121782513 | + | 11.6 | 0.737 | promoter-TSS (NM_008545) | promoter-TSS (NM_008545) | 223 | NM_212450 | 329506 | Mm.249405 | NM_212450 | ENSMUSG00000033411 | Ctdspl2 | D2Ertd485e | CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase like 2
chr16-37 | chr16 | 91219679 | 91219881 | + | 11.6 | 0.773 | Intergenic | Intergenic | -6015 | NM_016967 | 50913 | Mm.37289 | NM_016967 | ENSMUSG00000039830 | Olig2 | AI604895|Bhlhb1|Olg-2|Oligo2|RK17|bHLHe19 | oligodendrocyte transcription factor 2
chr7-46 | chr7 | 26162151 | 26162353 | + | 11.6 | 0.68 | Intergenic | L2b|LINE|L2 | -7509 | NM_028219 | 72383 | Mm.34382 | NM_001081375 | ENSMUSG00000063651 | Cnfn | 2210418J09Rik | cornifelin
chr6-125 | chr6 | 125165157 | 125165359 | + | 11.6 | 0.652 | promoter-TSS (NM_009496) | promoter-TSS (NM_009496) | -341 | NM_009496 | 22317 | Mm.32321 | NM_001080557 | ENSMUSG00000030337 | Vamp1 | Syb-1|Syb1|VAMP-1|lew | vesicle-associated membrane protein 1
chr8-331 | chr8 | 94032153 | 94032355 | + | 11.6 | 0.652 | intron (NM_011936, intron 7 of 8) | intron (NM_011936, intron 7 of 8) | 194830 | NM_011936 | 26383 | Mm.4375 | NM_011936 | ENSMUSG00000055932 | Fto | [NAME] | fat mass and obesity associated
chr11-161 | chr11 | 69735260 | 69735462 | + | 11.6 | 0.625 | promoter-TSS (NM_181582) | promoter-TSS (NM_181582) | 99 | NM_001166593 | 276770 | Mm.18026 | NM_001166589 | ENSMUSG00000078812 | Eif5a | AA410058|D19Wsu54e|Eif4d|Eif5a1|MGC6725|eIF-4D|eIF-5A|eIF-5A-1|eIF-5A1 | eukaryotic translation initiation factor 5A
chr1-108 | chr1 | 92219456 | 92219658 | + | 11.6 | 0.857 | Intergenic | Intergenic | 118979 | NM_007722 | 12778 | Mm.6522 | NM_007722 | ENSMUSG00000044337 | Cxcr7 | AW541270|CXC-R7|CXCR-7|Cmkor1|RDC-1|Rdc1 | chemokine (C-X-C motif) receptor 7
chr6-113 | chr6 | 122295828 | 122296030 | + | 11.6 | 0.824 | Intergenic | Intergenic | -8896 | NM_007905 | 13619 | Mm.6822 | NM_001042623 | ENSMUSG00000040669 | Phc1 | AW557034|Edr|Edr1|Mph1|Rae-28|rae28 | polyhomeotic-like 1 (Drosophila)
chr11-158 | chr11 | 68714874 | 68715076 | + | 11.6 | 0.75 | promoter-TSS (NR_003373) | promoter-TSS (NR_003373) | -93 | NM_009080 | 19941 | Mm.306548 | NM_009080 | ENSMUSG00000060938 | Rpl26 | SIG-20 | ribosomal protein L26
chr10-46 | chr10 | 84986720 | 84986922 | + | 11.6 | 0.882 | [NAME] (NM_028709, intron 1 of 16) | [NAME] (NM_028709, intron 1 of 16) | -74335 | NM_001017525 | 74007 | Mm.36544 | NM_001017525 | ENSMUSG00000020042 | Btbd11 | 6330404E16Rik | BTB (POZ) domain containing 11
chr8-341 | chr8 | 107784583 | 107784785 | + | 11.6 | 0.652 | [NAME] (NM_001033161, intron 1 of 4) | [NAME] (NM_001033161, intron 1 of 4) | 3810 | NM_001033161 | 71609 | Mm.264255 | NM_001033161 | ENSMUSG00000031887 | Tradd | 9130005N23Rik|AA930854 | TNFRSF1A-associated via death domain
chr1-112 | chr1 | 167701722 | 167701924 | + | 11.6 | 0.714 | [NAME], intron 3 of 3) | MIR|SINE|MIR | 7912 | NM_011804 | 433375 | Mm.468745 | NM_011804 | ENSMUSG00000040713 | Creg1 | AA755314|Creg | cellular repressor of E1A-stimulated genes 1
chr8-359 | chr8 | 118498456 | 118498658 | + | 11.6 | 0.762 | Intergenic | Intergenic | -267763 | NM_001025577 | 17132 | Mm.488377 | NM_001025577 | ENSMUSG00000055435 | Maf | 2810401A20Rik|A230108G15Rik|AW047063|c-maf | avian musculoaponeurotic fibrosarcoma (v-maf) AS42 oncogene homolog
chr11-176 | chr11 | 100149043 | 100149245 | + | 11.6 | 0.682 | Intergenic | Intergenic | -17959 | NM_212483 | 68239 | Mm.158190 | NM_212483 | ENSMUSG00000053654 | Krt42 | 2410039E07Rik|K17n|Ka22|ecat6 | keratin 42
chr12-264 | chr12 | 99762115 | 99762317 | + | 11.6 | 0.842 | intron (NM_029911, intron 1 of 6) | intron (NM_029911, intron 1 of 6) | 53934 | NM_029911 | 72258 | Mm.196158 | NM_029911 | ENSMUSG00000033854 | Kcnk10 | 1700024D23Rik|3010005K24Rik|Trek2 | potassium channel, subfamily K, member 10
chr13-34 | chr13 | 3360715 | 3360917 | + | 11.6 | 0.778 | Intergenic | Intergenic | -116733 | NR_015522 | 76937 | Mm.487240 | NR_015522 |  | 2810429I04Rik | AI256682 | RIKEN cDNA 2810429I04 gene
chr12-307 | chr12 | 109315752 | 109315954 | + | 11.6 | 0.652 | Intergenic | B4A|SINE|B4 | -74229 | NM_021399 | 58208 | Mm.392694 | NM_001079883 | ENSMUSG00000048251 | Bcl11b | 9130430L19Rik|AI604821|B630002E05Rik|BCL-11B|Ctip2|Rit1 | B cell leukemia/lymphoma 11B
chr16-26 | chr16 | 6476520 | 6476722 | + | 11.6 | 0.65 | intron (NM_021477, intron 2 of 16) | intron (NM_021477, intron 2 of 16) | 500941 | NR_045799 | 68238 | Mm.434605 | NR_045799 |  | 1700123O21Rik | - | RIKEN cDNA 1700123O21 gene
chr2-35 | chr2 | 164253994 | 164254196 | + | 11.6 | 0.6 | [NAME] (NM_011521, intron 4 of 4) | [NAME] (NM_011521, intron 4 of 4) | 14593 | [NAME] | 20971 | Mm.3815 | [NAME] | ENSMUSG00000017009 | Sdc4 | AA959608|AW108331|Synd4|ryudocan|syndecan-4 | syndecan 4
chr7-47 | chr7 | 28116741 | 28116943 | + | 11.6 | 0.773 | intron (NM_175641, intron 4 of 32) | intron (NM_175641, intron 4 of 32) | 1825 | NM_001113549 | 108075 | Mm.272251 | NM_001113549 | ENSMUSG00000040488 | Ltbp4 | 2310046A13Rik|MGC175966 | latent transforming growth factor beta binding protein 4
chr17-77 | chr17 | 30589354 | 30589556 | + | 11.6 | 0.8 | [NAME] (NM_172618, intron 6 of 11) | [NAME] (NM_172618, intron 6 of 11) | -56330 | NR_030688 | 623169 | Mm.440508 | NR_030688 |  | [NAME] | EG623169 | ribosomal protein S17 pseudogene
[NAME] | chr11 | 60952173 | 60952375 | + | 11.6 | 0.55 | Intergenic | (GA)n|Simple_repeat|Simple_repeat | -2063 | NM_021349 | 57916 | Mm.265915 | NM_021349 | ENSMUSG00000010142 | Tnfrsf13b | 1200009E08Rik|Taci | tumor necrosis factor receptor superfamily, member 13b
chr10-37 | chr10 | 69624338 | 69624540 | + | 11.6 | 0.889 | intron (NM_001111121, intron 3 of 8) | intron (NM_001111121, intron 3 of 8) | -42976 | [NAME] | 69563 | Mm.64672 | [NAME] |  | 2310015B20Rik | - | RIKEN cDNA 2310015B20 gene
chr4-137 | chr4 | 155483838 | 155484040 | + | 11.6 | 0.737 | promoter-TSS (NM_145557) | promoter-TSS (NM_145557) | -168 | NM_177205 | 230996 | Mm.318925 | NM_145557 | ENSMUSG00000059939 | 9430015G10Rik | - | RIKEN cDNA 9430015G10 gene
chr6-87 | chr6 | 48345240 | 48345442 | + | 11.6 | 0.682 | promoter-TSS (NM_133922) | promoter-TSS (NM_133922) | -244 | [NAME] | 77827 | Mm.489358 | [NAME] | ENSMUSG00000042810 | Krba1 | A930040G15Rik|AI448780 | KRAB-A domain containing 1
chr6-102 | chr6 | 117414424 | 117414626 | + | 11.6 | 0.762 | Intergenic | Intergenic | 287262 | NR_045731 | 72263 | Mm.443289 | NR_045731 |  | 1700030F04Rik | - | RIKEN cDNA 1700030F04 gene
chr6-136 | chr6 | 136780523 | 136780725 | + | 11.6 | 0.545 | [NAME] (NM_001039558, intron 1 of 1) | ID_B1|SINE|B4 | 3260 | NM_178776 | 320135 | Mm.391527 | NM_178776 | ENSMUSG00000047515 | BC049715 | - | cDNA sequence BC049715
chr3-25 | chr3 | 95021707 | 95021909 | + | 11.6 | 0.652 | promoter-TSS (NM_029885) | promoter-TSS (NM_029885) | 56 | NM_172512 | 213054 | Mm.224820 | NM_029885 | ENSMUSG00000038766 | Gabpb2 | 1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1 | GA repeat binding protein, beta 2
chr11-163 | chr11 | 70123503 | 70123705 | + | 11.6 | 0.895 | Intergenic | Intergenic | 12416 | NM_145684 | 11685 | Mm.274093 | NM_145684 | ENSMUSG00000018907 | Alox12e | 8-LOX|AW259591|Alox12-ps1|Alox12-ps2|Aloxe|e-LOX1 | arachidonate lipoxygenase, epidermal
chr17-95 | chr17 | 85489829 | 85490031 | + | 11.6 | 0.714 | promoter-TSS (NM_001163622) | promoter-TSS (NM_001163622) | -110 | NM_028576 | 73582 | Mm.441531 | NM_028576 | ENSMUSG00000071037 | 1700106N22Rik | AI480743|AV099781|CLNMT|CaM KMT|Camkmt | RIKEN cDNA 1700106N22 gene
chr14-50 | chr14 | 98814532 | 98814734 | + | 11.6 | 0.889 | Intergenic | ORR1D1|LTR|MaLR | -245871 | NM_007826 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr17-90 | chr17 | 56218299 | 56218501 | + | 11.6 | 0.682 | promoter-TSS (NM_008233) | promoter-TSS (NM_008233) | -680 | NM_008233 | 15193 | Mm.279188 | NM_008233 | ENSMUSG00000002833 | Hdgfrp2 | HRP-2 | hepatoma-derived growth factor, related protein 2
chr1-102 | chr1 | 88421949 | 88422151 | + | 11.6 | 0.636 | Intergenic | CpG | -1261 | [NAME] | 19231 | Mm.19187 | [NAME] | ENSMUSG00000026238 | [NAME] | MGC102090|MGC103390|Thym | prothymosin alpha
chr1-110 | chr1 | 95698614 | 95698816 | + | 11.6 | 0.889 | promoter-TSS (NM_023136) | promoter-TSS (NM_023136) | -204 | NM_001105667 | 21915 | Mm.250332 | NM_001105667 | ENSMUSG00000026281 | Dtymk | AU044245|CDC8|D10Ertd203e|TMPK|TYPK|Tmk|mtmk | deoxythymidylate kinase
chr16-35 | chr16 | 35588385 | 35588587 | + | 11.6 | 0.789 | intron (NM_013661, intron 1 of 21) | intron (NM_013661, intron 1 of 21) | 47038 | NM_013661 | 20357 | Mm.42015 | NM_013661 | ENSMUSG00000052133 | Sema5b | AI893641|SemG|Semag|mKIAA1445 | sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B
chr6-112 | chr6 | 121379043 | 121379245 | + | 11.6 | 0.81 | intron (NM_001033354, intron 2 of 13) | intron (NM_001033354, intron 2 of 13) | 44552 | NM_001033354 | 243621 | Mm.299442 | NM_001033354 | ENSMUSG00000040797 | Iqsec3 | AK122446|BRAG3|mKIAA1110|synarfGEF | IQ motif and Sec7 domain 3
chr4-125 | chr4 | 133035830 | 133036032 | + | 11.6 | 0.75 | promoter-TSS (NM_175307) | promoter-TSS (NM_175307) | -117 | NM_175307 | 100342 | Mm.204656 | NM_175307 | ENSMUSG00000046694 | Fam46b | 4732473B16Rik|AU045678|AU046069 | family with sequence similarity 46, member B
chr15-31 | chr15 | 77168969 | 77169171 | + | 11.6 | 0.609 | Intergenic | Intergenic | -31587 | NM_053104 | 93686 | Mm.202774 | NM_001110827 | ENSMUSG00000033565 | [NAME] | 2810460A15Rik|AA407676|AI118529|Fbm2|Fxh|Hrnbp2|Rbm9 | RNA binding protein, fox-1 homolog (C. elegans) 2
chr11-177 | chr11 | 100760356 | 100760558 | + | 11.6 | 0.682 | [NAME] (NM_011486, intron 11 of 23) | B1_Mus2|SINE|Alu | 38659 | NM_001164062 | 20850 | Mm.277403 | NM_001164062 | [NAME] | Stat5a | AA959963|STAT5 | signal transducer and activator of transcription 5A
chr10-50 | chr10 | 107727224 | 107727426 | + | 11.6 | 0.889 | Intergenic | Intergenic | -41920 | NM_054056 | 114774 | [NAME] | NM_054056 | ENSMUSG00000035873 | [NAME] | 2310001G03Rik|PAR4|Par-4 | PRKC, apoptosis, WT1, regulator
chr17-87 | chr17 | 48040916 | 48041118 | + | 11.6 | 0.609 | [NAME], intron 2 of 16) | [NAME], intron 2 of 16) | 20564 | NM_028767 | 74123 | Mm.240062 | NM_001110824 | ENSMUSG00000023991 | Foxp4 | 1200010K03Rik|2310007G05Rik|mFKHLA | forkhead box P4
chr12-233 | chr12 | 81870685 | 81870887 | + | 11.6 | 0.8 | Intergenic | Intergenic | -9084 | NM_001008423 | 380768 | Mm.29367 | NM_001008423 | ENSMUSG00000062961 | Gm1568 | MGC91363 | predicted gene 1568
chr8-394 | chr8 | 127515055 | 127515257 | + | 11.6 | 0.789 | Intergenic | Intergenic | -21741 | NM_016909 | 53424 | Mm.472734 | NM_016909 | ENSMUSG00000056820 | Tsnax | R74833|Trax | translin-associated factor X
chr7-60 | chr7 | 72808187 | 72808389 | + | 11.6 | 0.8 | intron (NM_172310, intron 8 of 18) | intron (NM_172310, intron 8 of 18) | 18504 | NM_172310 | 272396 | [NAME] | NM_172310 | ENSMUSG00000030515 | Tarsl2 | A530046H20Rik|MGC31414 | threonyl-tRNA synthetase-like 2
chr2-37 | chr2 | 165607826 | 165608028 | + | 11.6 | 0.81 | Intergenic | Intergenic | 75746 | NM_001252585 | 228880 | Mm.393102 | NM_172270 | ENSMUSG00000039671 | Zmynd8 | 1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|MGC25852|Prkcbp1|RACK7|mKIAA1125 | zinc finger, MYND-type containing 8
chr9-55 | chr9 | 42599423 | 42599625 | + | 11.6 | 0.833 | [NAME] (NM_175481, intron 3 of 20) | [NAME] (NM_175481, intron 3 of 20) | 152930 | NM_175481 | 110637 | Mm.370291 | NM_175481 | ENSMUSG00000032017 | Grik4 | 6330551K01Rik|GluK4|GluRgamma1|KA-1|KA1 | glutamate receptor, ionotropic, kainate 4
chr16-32 | chr16 | 35490146 | 35490348 | + | 11.6 | 0.8 | [NAME] (NM_028295, intron 1 of 16) | [NAME] (NM_028295, intron 1 of 16) | 712 | NM_028295 | 72599 | Mm.71015 | NM_028295 | ENSMUSG00000022844 | Pdia5 | 2700053F16Rik|AU015525|Pdir | protein disulfide isomerase associated 5
chr8-352 | chr8 | 113476266 | 113476468 | + | 11.6 | 0.75 | intron (NM_009179, intron 1 of 6) | intron (NM_009179, intron 1 of 6) | 32602 | NM_009179 | 20444 | Mm.200388 | NM_009179 | ENSMUSG00000031749 | St3gal2 | AI429591|AW822065|ST3GalII|Siat5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 2
chr4-111 | chr4 | 116961002 | 116961204 | + | 11.6 | 0.652 | intron (NM_025739, intron 6 of 14) | intron (NM_025739, intron 6 of 14) | 36509 | NM_026837 | 68777 | Mm.331805 | NM_026837 | ENSMUSG00000048772 | Tmem53 | 1110038M16Rik|1500001P22Rik|1700012A05Rik | [NAME] 53
chr1-114 | chr1 | 173483762 | 173483964 | + | 11.6 | 0.741 | Intergenic | RMER17D2|LTR|ERVK | -5461 | NM_018729 | 18106 | Mm.2299 | NM_018729 | ENSMUSG00000004709 | Cd244 | 2B4|C9.1|F730046O15Rik|Ly90|NAIL|NKR2B4|Nmrk|SLAMF4 | CD244 natural killer cell receptor 2B4
chr15-27 | chr15 | 12126698 | 12126900 | + | 11.6 | 0.727 | Intergenic | Intergenic | -8050 | NM_172958 | 268783 | Mm.54460 | NM_172958 | ENSMUSG00000039458 | Mtmr12 | 3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682 | myotubularin related protein 12
chr4-134 | chr4 | 154337926 | 154338128 | + | 11.6 | 0.667 | promoter-TSS (NM_172990) | promoter-TSS (NM_172990) | -215 | NM_172990 | 269614 | Mm.30042 | NM_172990 | ENSMUSG00000029056 | Pank4 | D030031I12Rik|R75150 | pantothenate kinase 4
chr19-30 | chr19 | 23764583 | 23764785 | + | 11.6 | 0.889 | [NAME] (NM_028208, intron 1 of 6) | ORR1A2|LTR|MaLR | 2794 | NM_028208 | 72351 | Mm.474795 | NM_028208 | ENSMUSG00000074925 | Ptar1 | 1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677 | protein prenyltransferase alpha subunit repeat containing 1
chr19-24 | chr19 | 6008236 | 6008438 | + | 11.6 | 0.727 | [NAME] (NM_007600, intron 8 of 21) | [NAME] (NM_007600, intron 8 of 21) | -4283 | NR_045783 | 100502985 | Mm.465338 | NR_045783 |  | Gm10814 | ENSMUSG00000075230 | predicted gene 10814
chr6-96 | chr6 | 115712191 | 115712393 | + | 11.6 | 0.714 | 5' UTR (NM_001168256, exon 1 of 12) | 5' UTR (NM_001168256, exon 1 of 12) | 192 | NM_001168256 | 94346 | Mm.29739 | NM_001168256 | ENSMUSG00000059900 | [NAME] | 9030407H20Rik|AV091463|W64236 | [NAME] 40
chr18-24 | chr18 | 66084953 | 66085155 | + | 11.6 | 0.824 | Intergenic | Intergenic | 13689 | NM_013833 | 19434 | Mm.489746 | NM_013833 | ENSMUSG00000024518 | Rax | 7530406A22Rik|E130303K03Rik|Rx|ey-1|ey1 | retina and anterior neural fold homeobox
chr7-56 | chr7 | 51562698 | 51562900 | + | 11.6 | 0.833 | promoter-TSS (NM_009131) | promoter-TSS (NM_009131) | -470 | NM_009131 | 20256 | Mm.20428 | NM_009131 | ENSMUSG00000004473 | Clec11a | AW457320|Clecsf3|Scgf | C-type lectin domain family 11, member a
chr8-349 | chr8 | 109696994 | 109697196 | + | 11.6 | 0.75 | intron (NM_025558, intron 3 of 4) | intron (NM_025558, intron 3 of 4) | 22534 | NM_025558 | 66427 | Mm.20242 | NM_025558 | ENSMUSG00000031924 | Cyb5b | 1810044O22Rik|AU015618|Cyb5m | cytochrome [NAME]
chr10-42 | chr10 | 81034413 | 81034615 | + | 11.6 | 0.762 | Intergenic | Intergenic | -3518 | NM_019725 | 21886 | Mm.38608 | NM_001252401 | ENSMUSG00000034771 | Tle2 | Grg2|KIAA4188|mKIAA4188 | transducin-like enhancer of split 2, homolog of [NAME])
chr8-316 | chr8 | 79999072 | 79999274 | + | 11.6 | 0.7 | [NAME] (NM_030113, intron 1 of 22) | RLTR11A2|LTR|ERVK | -41782 | NR_028125 | 70345 | Mm.411813 | NR_028125 |  | 0610038B21Rik | - | RIKEN cDNA 0610038B21 gene
chr19-34 | chr19 | 45226120 | 45226322 | + | 11.6 | 0.737 | intron (NM_021901, intron 1 of 2) | intron (NM_021901, intron 1 of 2) | 1016 | NM_021901 | 21908 | Mm.391203 | NM_021901 | ENSMUSG00000025215 | Tlx1 | Hox-11|Hox11 | T cell leukemia, homeobox 1
chr5-51 | chr5 | 115726016 | 115726218 | + | 11.6 | 0.696 | Intergenic | B3|SINE|B2 | -3213 | NM_016698 | 50849 | Mm.30051 | NM_016698 | ENSMUSG00000041740 | Rnf10 | AA675014|KIAA0262|RIE2|mKIAA0262 | ring finger protein 10
chr7-59 | chr7 | 52689609 | 52689811 | + | 11.6 | 0.6 | promoter-TSS (NM_030678) | promoter-TSS (NM_030678) | 124 | NM_011304 | 20174 | [NAME] | NM_011304 | ENSMUSG00000003868 | Ruvbl2 | MGC144733|MGC144734|mp47|p47 | RuvB-like protein 2
chr14-43 | chr14 | 51544517 | 51544719 | + | 11.6 | 0.941 | promoter-TSS (NM_133676) | promoter-TSS (NM_133676) | -6 | NM_009687 | 11792 | Mm.203 | NM_009687 | ENSMUSG00000035960 | Apex1 | APE|Apex|HAP1|Ref-1 | apurinic/apyrimidinic endonuclease 1
chr4-88 | chr4 | 104815623 | 104815825 | + | 11.6 | 0.8 | Intergenic | RLTR44A|LTR|ERVK | -14228 | NM_080555 | 67916 | Mm.348326 | NM_080555 | ENSMUSG00000028517 | Ppap2b | 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b | phosphatidic acid phosphatase type 2B
chr7-43 | chr7 | 20300965 | 20301167 | + | 11.6 | 0.88 | promoter-TSS (NM_016871) | promoter-TSS (NM_016871) | -288 | NM_016871 | 53333 | Mm.440173 | NM_001109748 | ENSMUSG00000002984 | Tomm40 | AW539759|MGC118268|Mom35|Tom40 | translocase of outer mitochondrial membrane 40 homolog (yeast)
chr11-152 | chr11 | 33699674 | 33699876 | + | 11.6 | 0.524 | [NAME] 1 of 8) | [NAME] 1 of 8) | 43810 | NM_027398 | 70357 | Mm.252514 | NM_001190885 | ENSMUSG00000053519 | Kcnip1 | 2900046L02Rik|3202002F18Rik|AI842357|AW494471|KCHIP1|Kchip1.2 | Kv channel-interacting protein 1
chr13-40 | chr13 | 23855498 | 23855700 | + | 11.6 | 0.714 | promoter-TSS (NM_030609) | promoter-TSS (NM_030609) | 62 | NM_030609 | 80838 | Mm.480242 | NM_030609 | ENSMUSG00000049539 | Hist1h1a | H1.1|H1a|H1f1|H1var3 | histone cluster 1, H1a
chr7-68 | chr7 | 151015570 | 151015772 | + | 11.6 | 0.708 | [NAME] (NM_007856, intron 1 of 8) | [NAME] (NM_007856, intron 1 of 8) | 6599 | NM_007856 | 13360 | Mm.249342 | NM_007856 | ENSMUSG00000058454 | Dhcr7 | AA409147 | 7-dehydrocholesterol reductase
chr6-142 | chr6 | 142981101 | 142981303 | + | 11.6 | 0.789 | intron (NM_029897, intron 16 of 24) | intron (NM_029897, intron 16 of 24) | 67425 | NM_029897 | 74741 | Mm.130260 | NM_001109688 | ENSMUSG00000030279 | 5730419I09Rik | C030008B15Rik|CDP138|Kiaa0528 | RIKEN cDNA 5730419I09 gene
chr3-21 | chr3 | 9578076 | 9578278 | + | 11.6 | 0.895 | intron (NM_133218, intron 1 of 8) | intron (NM_133218, intron 1 of 8) | 31908 | NM_133218 | 170753 | Mm.212908 | NM_133218 | ENSMUSG00000040209 | Zfp704 | C030026M03|C030034L19Rik|Gig1|Znf704 | zinc finger protein 704
chr1-95 | chr1 | 74442277 | 74442479 | + | 11.6 | 0.762 | 3' UTR (NM_153088, exon 7 of 7) | 3' UTR (NM_153088, exon 7 of 7) | 1494 | NR_029743 | 387219 |  | NR_029743 |  | Mir26b | Mirn26b|mmu-mir-26b | microRNA 26b
chr12-256 | chr12 | 90344766 | 90344968 | + | 11.6 | 0.727 | [NAME] (NM_172544, intron 2 of 19) | [NAME] (NM_172544, intron 2 of 19) | 153033 | NM_172544 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
[NAME] | chr11 | 35666757 | 35666959 | + | 11.6 | 0.727 | intron (NM_170779, intron 18 of 22) | intron (NM_170779, intron 18 of 22) | -18828 | NM_025936 | 104458 | Mm.284906 | NM_025936 | ENSMUSG00000018848 | Rars | 2610011N19Rik|2610037E21Rik|AL033339|AW985894 | arginyl-tRNA synthetase
chr12-246 | chr12 | 88128180 | 88128382 | + | 11.6 | 0.696 | Intergenic | Intergenic | 52962 | NM_001195767 | 627607 | Mm.341880 | NM_001195767 | ENSMUSG00000059114 | Gm6772 | EG627607 | predicted gene 6772
chr10-55 | chr10 | 126970923 | 126971125 | + | 11.6 | 0.619 | intron (NM_183297, intron 1 of 1) | intron (NM_183297, intron 1 of 1) | 591 | NM_183297 | 104080 | Mm.437200 | NM_183297 | ENSMUSG00000040258 | Nxph4 | 1110036M10Rik|AI851051 | [NAME] 4
chr8-344 | chr8 | 108040259 | 108040461 | + | 11.6 | 0.636 | Intergenic | Intergenic | -2286 | NM_008289 | 15484 | Mm.5079 | NM_008289 | ENSMUSG00000031891 | Hsd11b2 | 11HSD2 | hydroxysteroid 11-beta dehydrogenase 2
chr5-50 | chr5 | 115430282 | 115430484 | + | 11.6 | 0.737 | Intergenic | Intergenic | -9312 | NM_009327 | 21405 | Mm.332607 | NM_009327 | ENSMUSG00000029556 | [NAME] | AI323641|HNF1|HNF1-alpha|HNF1[a]|Hnf-1|Hnf1alpha|LFB1|Tcf-1|Tcf1 | HNF1 homeobox A
chr6-106 | chr6 | 119248131 | 119248333 | + | 11.6 | 0.579 | intron (NM_001033382, intron 19 of 37) | intron (NM_001033382, intron 19 of 37) | 30990 | NM_001172207 | 211187 | Mm.121498 | NM_001172207 | ENSMUSG00000055003 | Lrtm2 | A230084J22|AI841794 | leucine-rich repeats and transmembrane domains 2
chr8-322 | chr8 | 86317348 | 86317550 | + | 11.6 | 0.833 | Intergenic | ID_B1|SINE|B4 | -52239 | NM_001163031 | 26364 | Mm.334648 | NM_001163029 | ENSMUSG00000002885 | Cd97 | AA409984|TM7LN1 | CD97 antigen
chr15-37 | chr15 | 102757876 | 102758078 | + | 11.6 | 0.762 | 3' UTR (NM_010464, exon 2 of 2) | 3' UTR (NM_010464, exon 2 of 2) | 6415 | NM_010464 | 15422 | Mm.207062 | NM_010464 | ENSMUSG00000001655 | [NAME] | - | homeobox C13
chr12-252 | chr12 | 88288488 | 88288690 | + | 11.6 | 0.739 | intron (NM_173735, intron 1 of 3) | intron (NM_173735, intron 1 of 3) | 296 | NM_173735 | 217732 | Mm.22337 | NM_173735 | [NAME] | 2310044G17Rik | AI842544|AI853744|Kiaa1737|mKIAA1737 | RIKEN cDNA 2310044G17 gene
chr8-361 | chr8 | 121566747 | 121566949 | + | 11.6 | 0.7 | [NAME] (NM_019707, intron 6 of 13) | MLT1D|LTR|MaLR | -301590 | NM_024219 | 68196 | Mm.358714 | NM_024219 | ENSMUSG00000031839 | Hsbp1 | 0610007A03Rik|AA408769|Hsp25 | heat shock factor binding protein 1
chr2-27 | chr2 | 4933794 | 4933996 | + | 11.6 | 0.824 | promoter-TSS (NM_027290) | promoter-TSS (NM_027290) | -58 | NM_027290 | 70024 | Mm.447935 | NM_027290 | ENSMUSG00000026669 | Mcm10 | 2410041F14Rik|AU018508|C330019M07Rik|C79164 | minichromosome maintenance deficient 10 (S. cerevisiae)
chr11-167 | chr11 | 82736426 | 82736628 | + | 11.6 | 0.722 | [NAME] (NM_178680, intron 9 of 19) | MLT1F|LTR|MaLR | 11772 | NM_178680 | 217012 | Mm.295205 | NM_178680 | ENSMUSG00000018845 | Unc45b | AA445617|Cmya4|D230041A13Rik|MGC91090|Unc45 | unc-45 homolog B (C. elegans)
chr17-83 | chr17 | 33226263 | 33226465 | + | 11.6 | 0.895 | promoter-TSS (NM_001024950) | promoter-TSS (NM_001024950) | 52 | NM_001024950 | 240068 | Mm.121392 | NM_001024950 | ENSMUSG00000067424 | Zfp563 | D10628|D130054H01|NTfin7|Zfp413 | zinc finger protein 563
chr7-44 | chr7 | 20408849 | 20409051 | + | 11.6 | 0.619 | promoter-TSS (NM_033601) | promoter-TSS (NM_033601) | -846 | NM_033601 | 12051 | [NAME] | NM_033601 | ENSMUSG00000053175 | Bcl3 | AI528691|Bcl-3 | B cell leukemia/lymphoma 3
chr12-228 | chr12 | 3018634 | 3018836 | + | 11.6 | 0.85 | Intergenic | MMERGLN-int|LTR|ERV1 | -217056 | NR_015551 | 74173 | Mm.309774 | NR_015551 |  | 1700012B15Rik | 1810036A22Rik | RIKEN cDNA 1700012B15 gene
chr19-28 | chr19 | 7068078 | 7068280 | + | 11.6 | 0.708 | exon (NM_026675, exon 4 of 6) | exon (NM_026675, exon 4 of 6) | -1417 | NM_020566 | 57431 | Mm.10721 | NM_020566 | ENSMUSG00000024963 | Dnajc4 | 2010301J22Rik|Hspf2|Mcg18 | DnaJ (Hsp40) homolog, subfamily C, member 4
chr4-97 | chr4 | 107614631 | 107614833 | + | 11.6 | 0.727 | Intergenic | MTD|LTR|MaLR | -18538 | NM_009949 | 12896 | Mm.307620 | NM_009949 | ENSMUSG00000028607 | Cpt2 | AI323697|CPTII | [NAME] 2
chr13-37 | chr13 | 22010640 | 22010842 | + | 11.6 | 0.652 | Intergenic | Intergenic | -21823 | NR_035500 | 100316716 |  | NR_035500 |  | Mir1983 | mmu-mir-1983 | microRNA 1983
chr8-336 | chr8 | 104255672 | 104255874 | + | 11.6 | 0.789 | Intergenic | L1_Mus4|LINE|L1 | 1053238 | NM_009866 | 12552 | [NAME] | NM_009866 | ENSMUSG00000031673 | Cdh11 | Cad11|MGC25339 | cadherin 11
chr8-281 | chr8 | 11557793 | 11557995 | + | 11.6 | 0.7 | intron (NM_011919, intron 1 of 1) | CpG | 1828 | NM_011919 | 26356 | Mm.25709 | NM_011919 | ENSMUSG00000045969 | Ing1 | 2610028J21Rik|AA407184|AI875420|mING1h|p33Ing1|p37Ing1b | inhibitor of growth family, member 1
chr8-279 | chr8 | 11476401 | 11476603 | + | 11.6 | 0.737 | [NAME] intron 1 of 1) | [NAME] intron 1 of 1) | 1997 | NM_011227 | 19332 | Mm.390014 | NM_011227 | ENSMUSG00000031504 | Rab20 | AA536966|D8Ertd350e|MGC107554 | RAB20, member RAS oncogene family
chr8-337 | chr8 | 106601313 | 106601515 | + | 11.6 | 0.895 | Intergenic | Intergenic | -24111 | NM_009868 | 12562 | Mm.21767 | NM_009868 | ENSMUSG00000031871 | Cdh5 | 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec | cadherin 5
chr8-300 | chr8 | 23544498 | 23544700 | + | 11.6 | 0.68 | Intergenic | Intergenic | 22787 | NM_020560 | 57312 | Mm.289402 | NM_020560 | ENSMUSG00000031533 | Mrps31 | 1500002D03Rik|AA960481|Imogen38|Imogen44 | mitochondrial ribosomal protein [NAME]
chr17-84 | chr17 | 35215106 | 35215308 | + | 11.6 | 0.75 | exon (NM_027366, exon 3 of 3) | exon (NM_027366, exon 3 of 3) | 1320 | NM_027366 | 70274 | Mm.250491 | NM_027366 | ENSMUSG00000013766 | Ly6g6e | 2310011I02Rik|G6e | [NAME] 6 complex, locus G6E
chr5-45 | chr5 | 31542945 | 31543147 | + | 11.6 | 0.889 | promoter-TSS (NM_147201) | promoter-TSS (NM_147201) | -245 | NM_147201 | 192292 | Mm.292040 | NM_147201 | ENSMUSG00000029148 | Nrbp1 | B230344L17Rik|MGC6961|Nrbp | nuclear receptor binding protein 1
chr5-59 | chr5 | 137974725 | 137974927 | + | 11.6 | 0.565 | promoter-TSS (NM_010312) | promoter-TSS (NM_010312) | -369 | NM_010312 | 14693 | Mm.30141 | NM_010312 | ENSMUSG00000029713 | Gnb2 | Gnb-2 | guanine nucleotide binding protein (G protein), beta 2
chr4-84 | chr4 | 59796117 | 59796319 | + | 11.6 | 0.824 | intron (NM_001013577, intron 1 of 4) | PB1D10|SINE|Alu | 509 | NM_001013577 | 66209 | Mm.443220 | NM_001013577 | ENSMUSG00000038544 | 1110054O05Rik | 2610312O17Rik|AA399876|Ssbip1 | RIKEN cDNA 1110054O05 gene
chr7-50 | chr7 | 29766669 | 29766871 | + | 11.6 | 0.556 | promoter-TSS (NM_028659) | promoter-TSS (NM_028659) | 63 | NM_028659 | 73830 | Mm.29714 | NM_028659 | ENSMUSG00000053565 | Eif3k | 1200009C21Rik|Eif3s12 | eukaryotic translation initiation factor 3, subunit K
chr12-279 | chr12 | 103572093 | 103572295 | + | 11.6 | 0.714 | [NAME] (NM_177620, intron 3 of 9) | [NAME] (NM_177620, intron 3 of 9) | 50343 | NM_001161365 | 217835 | Mm.24145 | NM_001161365 | ENSMUSG00000044456 | Rin3 | 6430500K07|C86933 | [NAME] and Rab interactor 3
chr4-115 | chr4 | 117867745 | 117867947 | + | 11.6 | 0.6 | Intergenic | Intergenic | -15198 | NM_172382 | 230674 | [NAME] | NM_001161823 | ENSMUSG00000033326 | Kdm4a | D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|MGC28562|mKIAA0677 | lysine (K)-specific demethylase 4A
chr8-317 | chr8 | 80662417 | 80662619 | + | 11.6 | 0.714 | Intergenic | Intergenic | -74723 | NM_183096 | 73301 | Mm.61243 | NM_183096 | ENSMUSG00000037101 | Ttc29 | 1700031F13Rik | tetratricopeptide repeat domain 29
chr8-400 | chr8 | 129468765 | 129468967 | + | 11.6 | 0.591 | intron (NM_024214, intron 1 of 4) | intron (NM_024214, intron 1 of 4) | 955 | NM_024214 | 67952 | Mm.489811 | NM_024214 | ENSMUSG00000058779 | Tomm20 | 1810060K07Rik|BB284719|Gm19268|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 | translocase of outer mitochondrial membrane 20 homolog (yeast)
chr9-65 | chr9 | 108893563 | 108893765 | + | 11.6 | 0.727 | promoter-TSS (NM_173019) | promoter-TSS (NM_173019) | -283 | NM_173019 | 270198 | Mm.132391 | NM_001039215 | ENSMUSG00000025648 | Pfkfb4 | C230090D14 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4
chr11-171 | chr11 | 96777928 | 96778130 | + | 11.6 | 0.714 | promoter-TSS (NM_030248) | promoter-TSS (NM_030248) | -234 | NM_030248 | 80280 | Mm.28297 | NM_030248 | ENSMUSG00000018669 | Cdk5rap3 | 1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|MGC8303|MST016 | CDK5 regulatory subunit associated protein 3
chr3-33 | chr3 | 136498252 | 136498454 | + | 11.6 | 0.778 | intron (NM_008913, intron 2 of 13) | B4A|SINE|B4 | 164619 | NM_008913 | 19055 | Mm.331389 | NM_008913 | ENSMUSG00000028161 | Ppp3ca | 2900074D19Rik|AI841391|AW413465|CN|Caln|Calna|CnA|MGC106804 | protein phosphatase 3, catalytic subunit, alpha isoform
chr7-63 | chr7 | 128851006 | 128851208 | + | 11.6 | 0.941 | promoter-TSS (NM_001033173) | promoter-TSS (NM_001033173) | -340 | NM_001033173 | 76179 | Mm.122538 | NM_001033173 | ENSMUSG00000063317 | Usp31 | 6330567E21Rik|mKIAA1203 | ubiquitin specific peptidase 31
chr7-51 | chr7 | 30125163 | 30125365 | + | 11.6 | 0.667 | intron (NM_001081028, intron 16 of 22) | intron (NM_001081028, intron 16 of 22) | 36240 | NM_013874 | 29861 | Mm.453137 | NM_013874 | ENSMUSG00000030584 | Dpf1 | Neud4 | D4, zinc and double PHD fingers family 1
chr5-55 | chr5 | 124778079 | 124778281 | + | 11.6 | 0.895 | promoter-TSS (NM_001134717) | promoter-TSS (NM_001134717) | 82 | NM_001134717 | 72650 | Mm.121658 | NM_001134717 | ENSMUSG00000047635 | 2810006K23Rik | - | RIKEN cDNA 2810006K23 gene
chr8-345 | chr8 | 108238223 | 108238425 | + | 11.6 | 0.636 | Intergenic | Intergenic | 6121 | NM_027655 | 71046 | Mm.280888 | NM_027655 | ENSMUSG00000013158 | 4933405L10Rik | - | RIKEN cDNA 4933405L10 gene
chr6-109 | chr6 | 120406007 | 120406209 | + | 11.6 | 0.842 | Intergenic | Intergenic | -7107 | NM_008359 | 16172 | Mm.4481 | NM_008359 | ENSMUSG00000002897 | Il17ra | AW538159|Cdw217|Il17r|VDw217 | interleukin 17 receptor A
chr13-47 | chr13 | 63374168 | 63374370 | + | 11.6 | 0.636 | [NAME], intron 12 of 14) | [NAME], intron 12 of 14) | 24186 | NR_045794 | 100504114 | Mm.437070 | NR_045794 |  | Gm16907 | - | predicted gene, 16907
chr8-397 | chr8 | 128173402 | 128173604 | + | 11.6 | 0.583 | Intergenic | Intergenic | -20215 | NM_028908 | 74393 | Mm.41709 | NM_028908 | ENSMUSG00000050930 | 4933403G14Rik | AI835009|KIAA1383|Kiaa1383|mKIAA1383 | RIKEN cDNA 4933403G14 gene
chr13-45 | chr13 | 54711967 | 54712169 | + | 11.6 | 0.6 | [NAME] (NM_028870, intron 1 of 4) | [NAME] (NM_028870, intron 1 of 4) | 565 | NM_028870 | 74325 | Mm.290026 | NM_028870 | ENSMUSG00000047547 | Cltb | 2310046E19Rik | clathrin, light polypeptide (Lcb)
chr8-303 | chr8 | 25563813 | 25564015 | + | 11.6 | 0.842 | Intergenic | Intergenic | -14496 | [NAME] | 69068 | Mm.25775 | [NAME] | ENSMUSG00000056313 | 1810011O10Rik | 1110065B09Rik|AW121743|AW321058 | RIKEN cDNA 1810011O10 gene
chr10-33 | chr10 | 60954814 | 60955016 | + | 11.6 | 0.696 | [NAME] (NM_153542, intron 2 of 4) | [NAME] (NM_153542, intron 2 of 4) | 16334 | NM_153542 | 216011 | Mm.136116 | NM_153542 | ENSMUSG00000037151 | Lrrc20 | BC036304|MGC25719 | leucine rich repeat containing 20
chr12-370 | chr12 | 114521547 | 114521749 | + | 11.6 | 0.75 | Intergenic | Intergenic | 97534 | NM_153776 | 69195 | Mm.313244 | NM_153776 | ENSMUSG00000049036 | Tmem121 | 2410008J05Rik|Hole | [NAME] 121
chr6-82 | chr6 | 29697878 | 29698080 | + | 11.6 | 0.8 | intron (NM_176996, intron 1 of 11) | (CTGTG)n|Simple_repeat|Simple_repeat | 12482 | NM_176996 | 319757 | Mm.29279 | NM_176996 | ENSMUSG00000001761 | [NAME] | E130215L21Rik|Smoh|bnb|smoothened | smoothened homolog (Drosophila)
chr14-47 | chr14 | 68333618 | 68333820 | + | 11.6 | 0.591 | promoter-TSS (NM_001110162) | promoter-TSS (NM_001110162) | -52 | NM_001110162 | 108912 | Mm.33831 | NM_001110162 | ENSMUSG00000048922 | Cdca2 | 2610311M19Rik|AI586158 | cell division cycle associated 2
chr12-285 | chr12 | 105656802 | 105657004 | + | 11.6 | 0.783 | Intergenic | Intergenic | 11985 | NM_009252 | 20716 | Mm.482074 | NM_009252 | ENSMUSG00000021091 | Serpina3n | Spi2-2|Spi2.2|Spi2/eb.4 | serine (or cysteine) peptidase inhibitor, clade A, member 3N
chr6-114 | chr6 | 122510855 | 122511057 | + | 11.6 | 0.696 | [NAME], intron 2 of 4) | B1_Mur1|SINE|Alu | 7129 | NM_009645 | 11628 | Mm.391503 | NM_009645 | ENSMUSG00000040627 | Aicda | Aid|Arp2 | activation-induced cytidine deaminase
chr6-152 | chr6 | 146191734 | 146191936 | + | 11.6 | 0.81 | [NAME] (NM_010586, intron 36 of 55) | MTEb|LTR|MaLR | 258599 | NM_010586 | 16439 | Mm.393003 | NM_010586 | ENSMUSG00000030287 | Itpr2 | AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5 | inositol 1,4,5-triphosphate receptor 2
chr6-126 | chr6 | 125278611 | 125278813 | + | 11.6 | 0.8 | intron (NM_011324, intron 1 of 11) | intron (NM_011324, intron 1 of 11) | 7354 | NM_011324 | 20276 | [NAME] | NM_011324 | ENSMUSG00000030340 | Scnn1a | [NAME] | sodium channel, nonvoltage-gated 1 alpha
chr4-121 | chr4 | 123020714 | 123020916 | + | 11.6 | 0.714 | promoter-TSS (NM_001256019) | promoter-TSS (NM_001256019) | -320 | NM_007558 | 12163 | Mm.439749 | NM_001256019 | ENSMUSG00000032726 | Bmp8a | Bmp7r1|OP-2|OP2 | bone morphogenetic protein 8a
chr10-58 | chr10 | 22328936 | 22329138 | + | 10.9 | 0.75 | Intergenic | MamGypLTR1b|LTR|Gypsy | -35780 | NM_178934 | 353169 | [NAME] | NM_178934 | ENSMUSG00000037490 | Slc2a12 | GLUT-12|Glut12 | solute carrier family 2 (facilitated glucose transporter), member 12
chr19-47 | chr19 | 19184697 | 19184899 | + | 10.9 | 0.778 | [NAME] 1 of 9) | CpG | 888 | NM_001043354 | 225998 | Mm.276747 | NM_001043354 | ENSMUSG00000036192 | Rorb | MGC38728|Nr1f2|RZR-beta|RZRB|Rorbeta | RAR-related orphan receptor beta
chr4-189 | chr4 | 118777880 | 118778082 | + | 10.9 | 0.52 | Intergenic | Intergenic | -3369 | NM_011400 | 20525 | Mm.21002 | NM_011400 | ENSMUSG00000028645 | Slc2a1 | Glut-1|Glut1 | solute carrier family 2 (facilitated glucose transporter), member 1
chr3-34 | chr3 | 27555248 | 27555450 | + | 10.9 | 0.75 | intron (NM_173182, intron 1 of 25) | intron (NM_173182, intron 1 of 25) | 54012 | NM_173182 | 72007 | Mm.38832 | NM_173182 | ENSMUSG00000039286 | Fndc3b | 1600019O04Rik|AW550168|Fad104|KIAA4164|mKIAA4164 | fibronectin type III domain containing 3B
chr16-56 | chr16 | 63002882 | 63003084 | + | 10.9 | 0.842 | Intergenic | RMER1B|Other|Other | 148823 | NM_011173 | 19128 | Mm.127156 | NM_011173 | ENSMUSG00000022912 | Pros1 | AW214361 | [NAME] (alpha)
chr1-129 | chr1 | 62361408 | 62361610 | + | 10.9 | 0.824 | intron (NM_001081050, intron 16 of 22) | RSINE1|SINE|B4 | -388382 | NM_001077406 | 18187 | Mm.266341 | NM_001077403 | ENSMUSG00000025969 | Nrp2 | 1110048P06Rik|Np-2|Np2|Npn-2|Npn2 | neuropilin 2
chr13-57 | chr13 | 22036689 | 22036891 | + | 10.9 | 0.6 | promoter-TSS (NM_183014) | promoter-TSS (NM_183014) | -173 | NM_183014 | 193452 | Mm.187446 | NM_183014 | ENSMUSG00000006720 | Zfp184 | 4930500C15Rik|MGC62472 | zinc finger protein 184 (Kruppel-like)
chr8-501 | chr8 | 97309189 | 97309391 | + | 10.9 | 0.737 | Intergenic | Intergenic | 13210 | NM_009142 | 20312 | Mm.103711 | NM_009142 | ENSMUSG00000031778 | Cx3cl1 | AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1 | chemokine (C-X3-C motif) ligand 1
chr14-89 | chr14 | 99499147 | 99499349 | + | 10.9 | 0.652 | promoter-TSS (NM_028315) | promoter-TSS (NM_028315) | -259 | NM_028315 | 72662 | Mm.163339 | NM_028315 | ENSMUSG00000033166 | Dis3 | 2810028N01Rik | DIS3 mitotic control homolog (S. cerevisiae)
chr7-107 | chr7 | 100023351 | 100023553 | + | 10.9 | 0.875 | promoter-TSS (NM_028243) | promoter-TSS (NM_028243) | -311 | NM_028243 | 72461 | Mm.389969 | NM_028243 | ENSMUSG00000061119 | Prcp | 2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP | prolylcarboxypeptidase (angiotensinase C)
chr17-128 | chr17 | 35096453 | 35096655 | + | 10.9 | 0.75 | promoter-TSS (NM_010478) | promoter-TSS (NM_010478) | -371 | NM_010478 | 15511 | Mm.372314 | NM_010478 | ENSMUSG00000090877 | Hspa1b | Hsp70|Hsp70-1|Hsp70.1|hsp68 | heat shock protein 1B
chr12-427 | chr12 | 92791717 | 92791919 | + | 10.9 | 0.611 | Intergenic | Intergenic | -5533 | NR_038088 | 100568459 |  | NR_038088 |  | Bc1 | - | brain cytoplasmic RNA 1
chr6-222 | chr6 | 128089197 | 128089399 | + | 10.9 | 0.789 | [NAME] (NM_175414, intron 1 of 8) | [NAME] (NM_175414, intron 1 of 8) | 4298 | NM_175414 | 109246 | Mm.21814 | NM_175414 | ENSMUSG00000030352 | Tspan9 | 6720474K14Rik|9430079M16Rik|AU018597 | tetraspanin 9
chr1-150 | chr1 | 134013330 | 134013532 | + | 10.9 | 0.652 | intron (NM_008795, intron 11 of 15) | intron (NM_008795, intron 11 of 15) | 22831 | NM_008795 | 18557 | Mm.28130 | NM_008795 | ENSMUSG00000026437 | Cdk18 | AA682070|Ctk18|Pctk3 | cyclin-dependent kinase 18
chr12-488 | chr12 | 105631507 | 105631709 | + | 10.9 | 0.737 | intron (NM_009253, intron 4 of 4) | intron (NM_009253, intron 4 of 4) | 6234 | NM_009253 | 20717 | Mm.482078 | NM_009253 | ENSMUSG00000079012 | Serpina3m | 3e46|AI195004|MMCM7|MMSPi2.4|Spi-2l|Spi-2rs1|Spi2-rs1|Spi2.4|spi2 | serine (or cysteine) peptidase inhibitor, clade A, member 3M
chr6-231 | chr6 | 134948195 | 134948397 | + | 10.9 | 0.737 | Intergenic | B4A|SINE|B4 | -13334 | NM_026360 | 67755 | Mm.166524 | NM_026360 | ENSMUSG00000030204 | Ddx47 | 4930588A18Rik|C77285 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 47
chr5-72 | chr5 | 113604253 | 113604455 | + | 10.9 | 0.65 | Intergenic | Intergenic | -12021 | NM_172884 | 243219 | Mm.160131 | NM_172884 | ENSMUSG00000051339 | 2900026A02Rik | 8430408O14Rik|A530094D01|AW539426|Gm449|KIAA1671|Kiaa1671|mKIAA1671 | RIKEN cDNA 2900026A02 gene
chr6-230 | chr6 | 134279567 | 134279769 | + | 10.9 | 0.684 | Intergenic | Intergenic | -66679 | NM_025778 | 66813 | Mm.474472 | NM_025778 | ENSMUSG00000030200 | Bcl2l14 | 4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg | BCL2-like 14 (apoptosis facilitator)
chr6-211 | chr6 | 125141931 | 125142133 | + | 10.9 | 0.75 | promoter-TSS (NM_025595) | promoter-TSS (NM_025595) | -186 | NM_025595 | 66493 | Mm.138749 | NM_025595 | ENSMUSG00000030335 | Mrpl51 | 2610511M02Rik|CDA09|HSPC241|Mrp64 | mitochondrial ribosomal protein L51
chr14-96 | chr14 | 99896618 | 99896820 | + | 10.9 | 0.7 | Intergenic | B4|SINE|B4 | 198809 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr8-448 | chr8 | 28361528 | 28361730 | + | 10.9 | 0.667 | Intergenic | RLTR16|LTR|ERVK | -9170 | NM_007918 | 13685 | Mm.6700 | NM_007918 | ENSMUSG00000031490 | Eif4ebp1 | 4e-bp1|AA959816|PHAS-I | eukaryotic translation initiation factor 4E binding protein 1
chr19-42 | chr19 | 6235889 | 6236091 | + | 10.9 | 0.824 | promoter-TSS (NM_198168) | promoter-TSS (NM_198168) | -150 | NM_198168 | 225849 | Mm.118076 | NM_198168 | ENSMUSG00000024777 | Ppp2r5b | B'beta|BC026670 | protein phosphatase 2, regulatory subunit B (B56), beta isoform
chr15-45 | chr15 | 76309821 | 76310023 | + | 10.9 | 0.765 | [NAME] (NM_008296, intron 1 of 11) | [NAME] (NM_008296, intron 1 of 11) | 2047 | NM_008296 | 15499 | Mm.347444 | NM_008296 | ENSMUSG00000022556 | Hsf1 | AA960185 | heat shock factor 1
chr6-157 | chr6 | 34642501 | 34642703 | + | 10.9 | 0.85 | Intergenic | ORR1E|LTR|MaLR | -16842 | NM_145575 | 109624 | Mm.482600 | NM_145575 | ENSMUSG00000029761 | Cald1 | 4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik|MGC30319 | caldesmon 1
chr1-157 | chr1 | 141351879 | 141352081 | + | 10.9 | 0.667 | intron (NM_009791, intron 1 of 27) | intron (NM_009791, intron 1 of 27) | 630 | NM_009791 | 12316 | Mm.168523 | NM_009791 | ENSMUSG00000033952 | Aspm | Calmbp1|D330028K02Rik|FLJ10518|MCPH5|Sha1 | asp (abnormal spindle)-like, microcephaly associated (Drosophila)
chr3-57 | chr3 | 132771890 | 132772092 | + | 10.9 | 0.667 | exon (NM_027927, exon 7 of 7) | exon (NM_027927, exon 7 of 7) | 17074 | NM_027927 | 71793 | Mm.246726 | NM_027927 | ENSMUSG00000028016 | Ints12 | 1110020M19Rik|2810027J24Rik|4930529N21Rik|A230056J18Rik|AI666778|Phf22 | integrator complex subunit 12
chr17-116 | chr17 | 30701970 | 30702172 | + | 10.9 | 0.833 | [NAME] (NM_172618, intron 1 of 11) | [NAME] (NM_172618, intron 1 of 11) | 11161 | NM_172618 | 224671 | Mm.41220 | NM_027060 | ENSMUSG00000062202 | Btbd9 | 1700023F20Rik|4930402L05|AI464421 | BTB (POZ) domain containing 9
chr12-648 | chr12 | 114919055 | 114919257 | + | 10.9 | 0.722 | Intergenic | RLTRETN_Mm|LTR|ERVK | 137037 | [NAME] | 238406 | Mm.188683 | [NAME] | ENSMUSG00000043945 | Adam6a | Adam6|tMDCIV | a disintegrin and metallopeptidase domain 6A
chr6-240 | chr6 | 140780858 | 140781060 | + | 10.9 | 0.765 | Intergenic | Intergenic | 208140 | NM_009637 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr11-226 | chr11 | 100554259 | 100554461 | + | 10.9 | 0.588 | Intergenic | Intergenic | 11225 | NM_030150 | 80861 | Mm.271830 | NM_030150 | ENSMUSG00000017830 | [NAME] | B430001I08Rik|D11Lgp2e|LPG2|Lgp2|RLR-3 | [NAME] (Asp-Glu-X-His) box polypeptide 58
chr4-158 | chr4 | 98512620 | 98512822 | + | 10.9 | 0.682 | Intergenic | Intergenic | -28493 | NM_172872 | 242553 | Mm.440211 | NM_172872 | ENSMUSG00000035407 | Kank4 | AU021071|Ankrd38|BC060737|C130031J23 | KN motif and ankyrin repeat domains 4
chr14-94 | chr14 | 99841527 | 99841729 | + | 10.9 | 0.56 | Intergenic | Intergenic | 143718 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr19-55 | chr19 | 40489640 | 40489842 | + | 10.9 | 0.737 | [NAME], intron 3 of 23) | [NAME], intron 3 of 23) | -12941 | NM_001034964 | 20411 | Mm.489013 | [NAME] | ENSMUSG00000025006 | Sorbs1 | 2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296 | [NAME] and SH3 domain containing 1
chr16-50 | chr16 | 30063069 | 30063271 | + | 10.9 | 0.8 | Intergenic | L2a|LINE|L2 | -2273 | NM_008235 | 15205 | Mm.390859 | NM_008235 | ENSMUSG00000022528 | Hes1 | Hry|bHLHb39 | hairy and enhancer of split 1 (Drosophila)
chr4-149 | chr4 | 49099230 | 49099432 | + | 10.9 | 0.765 | [NAME] (NM_178756, intron 1 of 7) | (TG)n|Simple_repeat|Simple_repeat | 26997 | NM_178756 | 272031 | Mm.299460 | NM_178756 | ENSMUSG00000063446 | E130309F12Rik | KIAA4247|Lppr1|PRG-3|mKIAA4247 | RIKEN cDNA E130309F12 gene
chr6-188 | chr6 | 118985510 | 118985712 | + | 10.9 | 0.737 | [NAME] (NM_001256002, intron 3 of 47) | [NAME] (NM_001256002, intron 3 of 47) | 72596 | NM_001159534 | 12288 | Mm.436656 | NM_001159533 | ENSMUSG00000051331 | Cacna1c | Cav1.2|Cchl1a1|MBC|MELC-CC | calcium channel, voltage-dependent, L type, alpha 1C subunit
chr1-159 | chr1 | 159006502 | 159006704 | + | 10.9 | 0.722 | Intergenic | Intergenic | 32173 | NM_028540 | 73435 | Mm.116705 | NM_028540 | ENSMUSG00000026592 | 1700057K13Rik | MGC118391|MGC144290 | RIKEN cDNA 1700057K13 gene
chr6-182 | chr6 | 116333542 | 116333744 | + | 10.9 | 0.65 | [NAME] (NM_027920, intron 2 of 6) | [NAME] (NM_027920, intron 2 of 6) | 45502 | NM_027920 | 71779 | Mm.27064 | NM_027920 | ENSMUSG00000025702 | 2013-03-08 00:00:00 | 1300017E09Rik|Mir | membrane-associated ring finger (C3HC4) 8
chr8-541 | chr8 | 113367125 | 113367327 | + | 10.9 | 0.85 | [NAME], intron 2 of 25) | [NAME], intron 2 of 25) | 3477 | NM_133953 | 101943 | Mm.236123 | NM_133953 | ENSMUSG00000033732 | Sf3b3 | 1810061H24Rik|5730409A01Rik|AA409318|D8Ertd633e|RSE1|SAP130|mKIAA0017 | splicing factor 3b, subunit 3
chr7-127 | chr7 | 152050600 | 152050802 | + | 10.9 | 0.824 | 3' UTR (NM_010202, exon 3 of 3) | 3' UTR (NM_010202, exon 3 of 3) | 3410 | NM_010202 | 14175 | Mm.4956 | NM_010202 | ENSMUSG00000050917 | Fgf4 | [NAME] | fibroblast growth factor 4
chr7-120 | chr7 | 148089192 | 148089394 | + | 10.9 | 0.7 | Intergenic | Intergenic | -2670 | NR_015583 | 212965 | Mm.387212 | NR_015583 |  | BC024386 | BC039766 | cDNA sequence BC023486
chr8-403 | chr8 | 8612049 | 8612251 | + | 10.9 | 0.789 | Intergenic | Lx8|LINE|L1 | 48623 | NM_010111 | 13642 | Mm.209813 | NM_010111 | ENSMUSG00000001300 | Efnb2 | ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 | ephrin B2
chr16-59 | chr16 | 92302893 | 92303095 | + | 10.9 | 0.722 | [NAME] intron 1 of 3) | [NAME] intron 1 of 3) | 1446 | NM_138743 | 68936 | Mm.453127 | NM_138743 | ENSMUSG00000051989 | Fam165b | 1190017O12Rik|C21orf51 | family with sequence similarity 165, member B
chr11-232 | chr11 | 103267878 | 103268080 | + | 10.9 | 0.526 | intron (NM_183034, intron 1 of 11) | intron (NM_183034, intron 1 of 11) | 5999 | NM_183034 | 353047 | Mm.383308 | NM_183034 | ENSMUSG00000034247 | Plekhm1 | AP162|B2|BC038943|D330036J23Rik | pleckstrin homology domain containing, family M (with RUN domain) member 1
chr12-503 | chr12 | 106290762 | 106290964 | + | 10.9 | 0.765 | Intergenic | Lx7|LINE|L1 | 19964 | NM_028419 | 73046 | Mm.29128 | NM_028419 | ENSMUSG00000021102 | Glrx5 | 2310004O13Rik|2900070E19Rik|AU020725 | glutaredoxin 5 homolog (S. cerevisiae)
chr9-71 | chr9 | 45637359 | 45637561 | + | 10.9 | 0.737 | promoter-TSS (NM_001081373) | promoter-TSS (NM_001081373) | -739 | NM_001081373 | 214552 | Mm.260103 | NM_001081373 | ENSMUSG00000043987 | Cep164 | AI450905|BC027092|D030051D21|KIAA1052|MGC38792|mKIAA1052 | centrosomal protein 164
chr12-441 | chr12 | 100411712 | 100411914 | + | 10.9 | 0.857 | Intergenic | Intergenic | -10795 | NR_038130 | 67639 | Mm.87374 | NR_038130 |  | 4930474N09Rik | - | RIKEN cDNA 4930474N09 gene
chr12-449 | chr12 | 101017205 | 101017407 | + | 10.9 | 0.684 | [NAME] (NM_030172, intron 5 of 5) | Lx|LINE|L1 | 104346 | NM_030172 | 78767 | Mm.235920 | NM_030172 | ENSMUSG00000021176 | 2610021K21Rik | 2610110A13Rik|Efcab11 | RIKEN cDNA 2610021K21 gene
chr8-460 | chr8 | 77881688 | 77881890 | + | 10.9 | 0.7 | Intergenic | L1VL2|LINE|L1 | -90804 | NM_027944 | 71831 | Mm.443238 | NM_001164235 | ENSMUSG00000031620 | 1700007B14Rik | MGC143580|MGC143581 | RIKEN cDNA 1700007B14 gene
chr14-68 | chr14 | 55840823 | 55841025 | + | 10.9 | 0.812 | promoter-TSS (NM_027790) | promoter-TSS (NM_027790) | 80 | NM_027790 | 71412 | Mm.85484 | NM_027790 | ENSMUSG00000022209 | Dhrs2 | 5430405K24Rik|Hep27|MGC143467 | dehydrogenase/reductase member 2
chr4-145 | chr4 | 41044688 | 41044890 | + | 10.9 | 0.722 | [NAME] (NM_016689, intron 1 of 5) | [NAME] (NM_016689, intron 1 of 5) | 427 | NM_016689 | 11828 | Mm.34043 | NM_016689 | ENSMUSG00000028435 | Aqp3 | AQP-2 | aquaporin 3
chr1-121 | chr1 | 34519809 | 34520011 | + | 10.9 | 0.773 | [NAME] intron 2 of 14) | [NAME] intron 2 of 14) | 3319 | NM_011206 | 19253 | Mm.361 | NM_011206 | ENSMUSG00000026126 | Ptpn18 | FLP1|HSCF|PTP-HSCF|PTP-K1|Ptpk1 | protein tyrosine phosphatase, non-receptor type 18
chr16-47 | chr16 | 22413977 | 22414179 | + | 10.9 | 0.7 | [NAME] (NM_023794, intron 5 of 12) | [NAME] (NM_023794, intron 5 of 12) | 25565 | NM_023794 | 104156 | Mm.155708 | NM_023794 | ENSMUSG00000013089 | Etv5 | 1110005E01Rik|8430401F14Rik|ERM | ets variant gene 5
chr9-78 | chr9 | 57789066 | 57789268 | + | 10.9 | 0.652 | [NAME] (NM_011352, intron 1 of 13) | [NAME] (NM_011352, intron 1 of 13) | 1225 | NM_011352 | 20361 | Mm.335187 | NM_011352 | ENSMUSG00000038264 | Sema7a | 2900057C09Rik|CDw108|H-Sema-L|M-Sema-L|Semal | sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A
chr19-63 | chr19 | 47929156 | 47929358 | + | 10.9 | 0.684 | promoter-TSS (NM_010362) | promoter-TSS (NM_010362) | -222 | NM_010362 | 14873 | Mm.378931 | NM_010362 | ENSMUSG00000025068 | Gsto1 | AA407097|AI194287|AU018802|GSTO 1-1|GSTX|SPG-R|p28 | glutathione S-transferase omega 1
chr11-252 | chr11 | 121078582 | 121078784 | + | 10.9 | 0.81 | [NAME] (NM_001001333, intron 6 of 12) | [NAME] (NM_001001333, intron 6 of 12) | 9726 | NM_001146073 | 238023 | Mm.275130 | NM_001001333 | ENSMUSG00000039307 | [NAME] | BC069960|MGC78289 | hexosaminidase (glycosyl hydrolase family 20, catalytic domain) containing
chr12-387 | chr12 | 87181693 | 87181895 | + | 10.9 | 0.737 | [NAME] (NM_001081423, intron 3 of 33) | MLT1D-int|LTR|MaLR | 15894 | NM_001081423 | 320244 | Mm.132172 | NM_177114 | ENSMUSG00000012609 | Ttll5 | 1700048H13Rik|2310009M18Rik|4930556H18Rik|AI428864|D630041K24Rik|R75373|Stamp|mKIAA0998 | tubulin tyrosine ligase-like family, member 5
chr8-506 | chr8 | 97493333 | 97493535 | + | 10.9 | 0.667 | Intergenic | Intergenic | -7575 | NM_001198894 | 14766 | Mm.290834 | NM_001198894 | ENSMUSG00000031785 | Gpr56 | Cyt28|TM7LN4|TM7XN1 | G protein-coupled receptor 56
chr12-381 | chr12 | 81840572 | 81840774 | + | 10.9 | 0.812 | Intergenic | Intergenic | 21029 | NM_001008423 | 380768 | Mm.29367 | NM_001008423 | ENSMUSG00000062961 | Gm1568 | MGC91363 | predicted gene 1568
chr17-139 | chr17 | 87444211 | 87444413 | + | 10.9 | 0.667 | Intergenic | Intergenic | 19411 | NM_019936 | 56724 | Mm.109329 | NM_019936 | ENSMUSG00000024146 | Cript | 1200020A08Rik|AA589469 | cysteine-rich PDZ-binding protein
[NAME] | chr11 | 116855720 | 116855922 | + | 10.9 | 0.632 | Intergenic | Intergenic | 75644 | NM_172948 | 268510 | Mm.35141 | NM_172948 | ENSMUSG00000043857 | Mgat5b | C330018B01|GnT-IX|mGnTVB | mannoside acetylglucosaminyltransferase 5, isoenzyme B
chr10-65 | chr10 | 75313089 | 75313291 | + | 10.9 | 0.824 | Intergenic | Intergenic | 9805 | NM_010798 | 17319 | Mm.2326 | NM_010798 | ENSMUSG00000033307 | Mif | GIF|Glif|MGC107654 | macrophage migration inhibitory factor
chr11-199 | chr11 | 60591063 | 60591265 | + | 10.9 | 0.667 | promoter-TSS (NM_009410) | promoter-TSS (NM_009410) | 137 | NM_175491 | 237782 | Mm.57726 | NM_001085440 | ENSMUSG00000049323 | Smcr8 | 2310076G09Rik|AI642055|D030073L15Rik|MGC103295 | Smith-Magenis syndrome chromosome region, candidate 8 homolog (human)
chr7-85 | chr7 | 30600682 | 30600884 | + | 10.9 | 0.6 | promoter-TSS (NM_001145880) | promoter-TSS (NM_001145880) | -308 | NM_146185 | 233056 | [NAME] | [NAME] | ENSMUSG00000011427 | Zfp790 | 6330581L23Rik|MGC6654 | zinc finger protein 790
chr8-415 | chr8 | 12147359 | 12147561 | + | 10.9 | 0.824 | Intergenic | Intergenic | -238311 | NR_027975 | 434280 | Mm.447484 | NM_001013812 |  | [NAME] | EG434280 | predicted gene 5607
chr8-510 | chr8 | 98027885 | 98028087 | + | 10.9 | 0.765 | Intergenic | Intergenic | -15266 | NM_009974 | 13000 | Mm.440348 | NM_009974 | ENSMUSG00000046707 | Csnk2a2 | 1110035J23Rik|C77789|CK2 | casein kinase 2, alpha prime polypeptide
chr8-467 | chr8 | 86343735 | 86343937 | + | 10.9 | 0.812 | Intergenic | ZP3AR|Satellite|Satellite | -78626 | NM_001163031 | 26364 | Mm.334648 | NM_001163029 | ENSMUSG00000002885 | Cd97 | AA409984|TM7LN1 | CD97 antigen
chr8-537 | chr8 | 112111066 | 112111268 | + | 10.9 | 0.619 | Intergenic | Intergenic | -8095 | NM_017370 | 15439 | Mm.26730 | NM_017370 | ENSMUSG00000031722 | Hp | HP-1 | haptoglobin
chr18-43 | chr18 | 75900217 | 75900419 | + | 10.9 | 0.7 | Intergenic | Intergenic | -42968 | NM_201354 | 269037 | Mm.36745 | NM_201354 | ENSMUSG00000052928 | Ctif | Gm672|MGC67202 | CBP80/20-dependent translation initiation factor
chr4-199 | chr4 | 121376385 | 121376587 | + | 10.9 | 0.875 | Intergenic | Lx4B|LINE|L1 | -81756 | NM_001099309 | 666927 | Mm.465133 | NM_001099309 | ENSMUSG00000078575 | Gm12887 | OTTMUSG00000008910 | predicted gene 12887
chr2-45 | chr2 | 31118949 | 31119151 | + | 10.9 | 0.765 | [NAME] (NM_019681, intron 1 of 7) | [NAME] (NM_019681, intron 1 of 7) | 17607 | NM_019681 | 14299 | Mm.249318 | NM_019681 | ENSMUSG00000062661 | Ncs1 | 9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1 | neuronal calcium sensor 1
chr8-457 | chr8 | 73396775 | 73396977 | + | 10.9 | 0.737 | [NAME] (NM_026964, intron 1 of 4) | [NAME] (NM_026964, intron 1 of 4) | 513 | NM_026964 | 234388 | Mm.295791 | NM_026964 | ENSMUSG00000007721 | Ccdc124 | 1810023B24Rik | coiled-coil domain containing 124
chr5-67 | chr5 | 44260542 | 44260744 | + | 10.9 | 0.625 | intron (NM_007646, intron 1 of 7) | intron (NM_007646, intron 1 of 7) | 577 | NM_007646 | 12494 | Mm.249873 | NM_007646 | ENSMUSG00000029084 | Cd38 | Cd38-rs1 | CD38 antigen
chr6-165 | chr6 | 112904763 | 112904965 | + | 10.9 | 0.6 | Intergenic | Intergenic | -7604 | [NAME] | 259302 | Mm.236401 | NM_153070 | ENSMUSG00000030257 | Srgap3 | AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411 | SLIT-ROBO Rho GTPase activating protein 3
chr7-70 | chr7 | 4863886 | 4864088 | + | 10.9 | 0.727 | Intergenic | ORR1B2|LTR|MaLR | -2832 | NM_170759 | 232816 | Mm.27442 | NM_170759 | ENSMUSG00000074406 | Zfp628 | Zec|Znf628 | zinc finger protein 628
chr12-434 | chr12 | 99084758 | 99084960 | + | 10.9 | 0.75 | Intergenic | Lx3A|LINE|L1 | 412688 | NM_008079 | 14420 | Mm.5120 | NM_008079 | ENSMUSG00000021003 | Galc | 2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher | galactosylceramidase
chr11-229 | chr11 | 101995510 | 101995712 | + | 10.9 | 0.882 | Intergenic | Intergenic | -11290 | NM_145829 | 217214 | Mm.31686 | NM_145829 | ENSMUSG00000048217 | Nags | 1700120E20Rik|AI415708|RP23-398F7.13|argA | N-acetylglutamate synthase
chr9-86 | chr9 | 102447427 | 102447629 | + | 10.9 | 0.684 | 3' UTR (NM_024291, exon 11 of 11) | 3' UTR (NM_024291, exon 11 of 11) | 39060 | NM_024291 | 16716 | Mm.101692 | NM_024291 | ENSMUSG00000035606 | Ky | CD1|D9Mgc44e|ky | kyphoscoliosis peptidase
chr6-194 | chr6 | 120615591 | 120615793 | + | 10.9 | 0.737 | promoter-TSS (NM_001128151) | promoter-TSS (NM_001128151) | -747 | NM_001128151 | 330409 | Mm.333357 | NM_001128151 | ENSMUSG00000071226 | Cecr2 | 2610101O16Rik|2810409N01Rik|Gtl4|KIAA1740|mKIAA1740 | cat eye syndrome chromosome region, candidate 2 homolog (human)
chr12-517 | chr12 | 107239973 | 107240175 | + | 10.9 | 0.75 | Intergenic | Intergenic | -8399 | NM_011705 | 22367 | Mm.2981 | NM_001029843 | ENSMUSG00000021115 | Vrk1 | 51PK | vaccinia related kinase 1
chr5-95 | chr5 | 144578122 | 144578324 | + | 10.9 | 0.722 | promoter-TSS (NM_013557) | promoter-TSS (NM_013557) | -438 | NM_013557 | 15467 | Mm.431968 | NM_013557 | ENSMUSG00000029613 | Eif2ak1 | HCR|Hri|MGC118066 | eukaryotic translation initiation factor 2 alpha kinase 1
chr12-399 | chr12 | 87904153 | 87904355 | + | 10.9 | 0.714 | Intergenic | Intergenic | -115396 | NM_177354 | 238328 | Mm.216101 | NM_177354 | ENSMUSG00000021256 | [NAME] | AI834978|D930046M13Rik|G630009D10Rik | vasohibin 1
chr11-214 | chr11 | 88558375 | 88558577 | + | 10.9 | 0.682 | intron (NM_001201341, intron 5 of 7) | intron (NM_001201341, intron 5 of 7) | 21067 | NM_054043 | 76626 | Mm.474737 | NM_001201341 | ENSMUSG00000069769 | Msi2 | 1700105C15Rik|AI451722|AI563628|AW489193|MGC118040|MGC130496|Msi2h | Musashi homolog 2 (Drosophila)
chr14-104 | chr14 | 119053633 | 119053835 | + | 10.9 | 0.737 | [NAME] intron 3 of 30) | [NAME] intron 3 of 30) | 22419 | NM_001163675 | 239273 | Mm.40537 | NM_001033336 | ENSMUSG00000032849 | Abcc4 | D630049P08Rik|MOATB|MRP4 | ATP-binding cassette, sub-family C (CFTR/MRP), member 4
chr1-148 | chr1 | 95564669 | 95564871 | + | 10.9 | 0.833 | Intergenic | Intergenic | -17501 | NM_016778 | 51800 | Mm.3295 | NM_016778 | ENSMUSG00000026278 | Bok | AI847676|AU021146|matador|mtd | BCL2-related ovarian killer protein
chr6-176 | chr6 | 114975188 | 114975390 | + | 10.9 | 0.824 | [NAME] (NM_026894, intron 4 of 7) | [NAME] (NM_026894, intron 4 of 7) | 12603 | NM_026894 | 68971 | [NAME] | NM_026894 | ENSMUSG00000030316 | 1500001M20Rik | TAM41|Tamm41 | RIKEN cDNA 1500001M20 gene
chr4-204 | chr4 | 129373312 | 129373514 | + | 10.9 | 0.727 | intron (NM_199305, intron 1 of 8) | intron (NM_199305, intron 1 of 8) | 669 | NM_199305 | 230770 | Mm.257157 | NM_199305 | ENSMUSG00000053730 | Tmem39b | 6330509E05Rik|BC037095|MGC59407 | [NAME] 39b
chr11-237 | chr11 | 109559482 | 109559684 | + | 10.9 | 0.684 | [NAME] (NM_153782, intron 1 of 10) | ID_B1|SINE|B4 | 23987 | NM_153782 | 208659 | Mm.208662 | NM_153782 | ENSMUSG00000020614 | Fam20a | AI606893 | family with sequence similarity 20, member A
chr7-100 | chr7 | 56630178 | 56630380 | + | 10.9 | 0.667 | [NAME] (NM_175272, intron 3 of 37) | [NAME] (NM_175272, intron 3 of 37) | 128720 | NM_175272 | 78286 | Mm.471488 | NM_001111016 | ENSMUSG00000052512 | Nav2 | 5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015 | neuron navigator 2
chr10-73 | chr10 | 82227127 | 82227329 | + | 10.9 | 0.65 | promoter-TSS (NM_010914) | promoter-TSS (NM_010914) | -342 | NM_010914 | 18045 | Mm.245998 | NM_010914 | [NAME] | [NAME] | AA985999|Cbf-A | nuclear transcription factor-Y beta
chr15-56 | chr15 | 101146045 | 101146247 | + | 10.9 | 0.75 | Intergenic | Intergenic | 22503 | NR_033803 | 77717 | Mm.391998 | NR_033803 |  | 6030408B16Rik | AI225877 | RIKEN cDNA 6030408B16 gene
chr8-421 | chr8 | 13316995 | 13317197 | + | 10.9 | 0.75 | [NAME] (NM_172282, intron 10 of 12) | [NAME] (NM_172282, intron 10 of 12) | -22578 | NM_009361 | 21781 | Mm.925 | NM_009361 | ENSMUSG00000038482 | Tfdp1 | Dp1|Drtf1 | transcription factor [NAME]
chr3-37 | chr3 | 45183351 | 45183553 | + | 10.9 | 0.737 | exon (NM_011043, exon 1 of 1) | exon (NM_011043, exon 1 of 1) | 1132 | NM_001098171 | 18526 | Mm.242644 | NM_001098170 | ENSMUSG00000049100 | Pcdh10 | 6430521D13Rik|6430703F07Rik|OL-pc|mKIAA1400 | protocadherin 10
chr6-243 | chr6 | 142542296 | 142542498 | + | 10.9 | 0.778 | intron (NM_011511, intron 39 of 39) | intron (NM_011511, intron 39 of 39) | -20718 | NR_037679 | 321015 | Mm.35670 | NM_177314 |  | 5330439B14Rik | - | RIKEN cDNA 5330439B14 gene
chr1-165 | chr1 | 182835878 | 182836080 | + | 10.9 | 0.682 | [NAME] (NM_133705, intron 2 of 6) | [NAME] (NM_133705, intron 2 of 6) | 1574 | NM_133705 | 69051 | Mm.274180 | NM_133705 | ENSMUSG00000026520 | Pycr2 | 1810018M05Rik|P5cr2 | pyrroline-5-carboxylate reductase family, member 2
chr16-45 | chr16 | 18588410 | 18588612 | + | 10.9 | 0.824 | Intergenic | CpG | -1449 | NM_011532 | 21380 | Mm.295194 | NM_011532 | ENSMUSG00000009097 | Tbx1 | - | T-box 1
chr9-96 | chr9 | 119911055 | 119911257 | + | 10.9 | 0.75 | Intergenic | Intergenic | -17380 | NM_153287 | 215418 | Mm.489595 | NM_153287 | ENSMUSG00000032515 | Csrnp1 | 4931429D10Rik|Axud1|CSRNP-1|URAX1|taip-3 | cysteine-serine-rich nuclear protein 1
chr14-90 | chr14 | 99508477 | 99508679 | + | 10.9 | 0.684 | intron (NM_029320, intron 4 of 17) | intron (NM_029320, intron 4 of 17) | -9589 | NM_028315 | 72662 | Mm.163339 | NM_028315 | ENSMUSG00000033166 | Dis3 | 2810028N01Rik | DIS3 mitotic control homolog (S. cerevisiae)
chr8-578 | chr8 | 123723140 | 123723342 | + | 10.9 | 0.778 | Intergenic | Intergenic | 71656 | NM_008024 | 14241 | Mm.5111 | NM_008024 |  | Foxl1 | FREAC7|Fkh6|fkh-6 | forkhead box L1
chr12-578 | chr12 | 111611861 | 111612063 | + | 10.9 | 0.789 | Intergenic | Intergenic | -73427 | NM_001135001 | 26931 | Mm.458056 | NM_001037934 | ENSMUSG00000017843 | [NAME] | 2610043M05Rik|2700063L20Rik|AI060890|AW545884|C85228|D12Bwg0916e|mKIAA0044 | protein phosphatase 2, regulatory subunit B (B56), gamma isoform
chr2-60 | chr2 | 127332942 | 127333144 | + | 10.9 | 0.737 | [NAME] (NM_019789, intron 2 of 8) | [NAME] (NM_019789, intron 2 of 8) | 14063 | NM_019789 | 56461 | Mm.315292 | NM_001111331 | ENSMUSG00000079056 | Kcnip3 | 4933407H12Rik|AI413860|Csen|DREAM|KChIP3|R74849 | Kv channel interacting protein 3, calsenilin
chr13-75 | chr13 | 96381793 | 96381995 | + | 10.9 | 0.833 | [NAME] (NM_010169, intron 1 of 1) | [NAME] (NM_010169, intron 1 of 1) | 6494 | NM_010169 | 14062 | Mm.24816 | NM_010169 | ENSMUSG00000048376 | F2r | [NAME] | coagulation factor II (thrombin) receptor
chr18-32 | chr18 | 35114267 | 35114469 | + | 10.9 | 0.778 | promoter-TSS (NM_010481) | promoter-TSS (NM_010481) | -363 | NM_010481 | 15526 | Mm.209419 | NM_010481 | ENSMUSG00000024359 | Hspa9 | 74kDa|Csa|Grp75|Hsc74|Hsp74|Hsp74a|Hspa9a|Mortalin|Mot-2|Mot2|Mthsp70|Pbp74 | heat shock protein 9
chr19-46 | chr19 | 10175114 | 10175316 | + | 10.9 | 0.684 | [NAME], intron 1 of 11) | [NAME], intron 1 of 11) | 778 | NM_019699 | 56473 | [NAME] | NM_019699 | ENSMUSG00000024665 | Fads2 | 2900042M13Rik|Fadsd2 | fatty acid desaturase 2
chr17-124 | chr17 | 31258957 | 31259159 | + | 10.9 | 0.789 | Intergenic | Intergenic | 7498 | NM_011575 | 21786 | Mm.4641 | NM_011575 | ENSMUSG00000024029 | Tff3 | ITF|mITF | trefoil factor 3, intestinal
chr8-475 | chr8 | 87500546 | 87500748 | + | 10.9 | 0.667 | TTS (NM_008416) | TTS (NM_008416) | 2000 | NM_008416 | 16477 | Mm.1167 | NM_008416 | ENSMUSG00000052837 | [NAME] | - | Jun-B oncogene
chr8-493 | chr8 | 91913900 | 91914102 | + | 10.9 | 0.765 | Intergenic | B4|SINE|B4 | -345940 | NM_021390 | 58198 | Mm.214361 | NM_021390 | ENSMUSG00000031665 | Sall1 | Msal-3 | sal-like 1 (Drosophila)
chr12-423 | chr12 | 89464294 | 89464496 | + | 10.9 | 0.684 | Intergenic | Intergenic | -44057 | NM_001105254 | 100039315 | Mm.458830 | NM_001105254 | ENSMUSG00000072907 | Gm10436 | ENSMUSG00000072907|MGC107361 | predicted gene 10436
chr8-408 | chr8 | 9233410 | 9233612 | + | 10.9 | 0.938 | intron (NM_173446, intron 1 of 2) | intron (NM_173446, intron 1 of 2) | -101223 | NR_045854 | 71249 | Mm.158635 | NR_045854 |  | 4933430N04Rik | - | RIKEN cDNA 4933430N04 gene
chr7-125 | chr7 | 151008363 | 151008565 | + | 10.9 | 0.7 | promoter-TSS (NM_007856) | promoter-TSS (NM_007856) | 282 | NM_030221 | 78914 | Mm.35104 | NM_030221 | ENSMUSG00000031090 | Nadsyn1 | 9130012B15Rik | NAD synthetase 1
chr13-66 | chr13 | 41295522 | 41295724 | + | 10.9 | 0.75 | [NAME] (NM_019423, intron 1 of 7) | [NAME] (NM_019423, intron 1 of 7) | 20149 | NM_019423 | 54326 | Mm.2567 | NM_019423 | ENSMUSG00000021364 | Elovl2 | AI317360|Ssc2 | elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 2
chr6-172 | chr6 | 114234262 | 114234464 | + | 10.9 | 0.722 | intron (NM_178703, intron 1 of 15) | intron (NM_178703, intron 1 of 15) | 1734 | NM_178703 | 232333 | Mm.5260 | NM_178703 | ENSMUSG00000030310 | Slc6a1 | A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1 | solute carrier family 6 (neurotransmitter transporter, GABA), member 1
chr12-421 | chr12 | 88650333 | 88650535 | + | 10.9 | 0.778 | 3' UTR (NM_011479, exon 12 of 12) | 3' UTR (NM_011479, exon 12 of 12) | 42756 | NM_146036 | 217737 | Mm.22626 | NM_146036 | ENSMUSG00000021037 | Ahsa1 | BC023857|MGC36589|MGC36618|p38 | AHA1, activator of heat shock protein ATPase homolog 1 (yeast)
chr3-38 | chr3 | 50969197 | 50969399 | + | 10.9 | 0.789 | Intergenic | MT2A|LTR|ERVL | -59071 | NM_009834 | 12457 | Mm.86541 | NM_009834 | ENSMUSG00000023087 | Ccrn4l | AU043840|Ccr4|nocturnin | CCR4 carbon catabolite repression 4-like (S. cerevisiae)
chr7-75 | chr7 | 17200941 | 17201143 | + | 10.9 | 0.81 | promoter-TSS (NM_172739) | promoter-TSS (NM_172739) | -700 | NM_172739 | 232906 | Mm.400358 | NM_172739 | ENSMUSG00000058230 | Grlf1 | 6430596G11Rik|AI841135|Arhgap35|KIAA1722|mKIAA1722|p190A|p190RhoGAP | glucocorticoid receptor DNA binding factor 1
chr8-515 | chr8 | 99153653 | 99153855 | + | 10.9 | 0.762 | Intergenic | IAP-d-int|LTR|ERVK | 666310 | NR_037310 | 100499527 |  | NR_037310 |  | Mir1186b | mmu-mir-1186b | microRNA 1186b
chr11-218 | chr11 | 95843743 | 95843945 | + | 10.9 | 0.739 | [NAME] (NM_009951, intron 2 of 14) | [NAME] (NM_009951, intron 2 of 14) | -19147 | NR_037223 | 100526468 |  | NR_037223 |  | Mir3063 | mmu-mir-3063 | microRNA 3063
chr7-74 | chr7 | 13640084 | 13640286 | + | 10.9 | 0.609 | promoter-TSS (NM_145819) | promoter-TSS (NM_145819) | -72 | NM_145819 | 109889 | Mm.10103 | NM_145819 | ENSMUSG00000030380 | Mzf1 | Mzf-2|Mzf2|Zfp121|Zfp98|Znf42 | myeloid zinc finger 1
chr6-236 | chr6 | 136548930 | 136549132 | + | 10.9 | 0.7 | [NAME] (NM_019426, intron 12 of 14) | [NAME] (NM_019426, intron 12 of 14) | 61383 | NM_025806 | 66857 | Mm.3311 | NM_025806 | ENSMUSG00000030214 | Plbd1 | 1100001H23Rik | phospholipase B domain containing 1
chr11-231 | chr11 | 102870620 | 102870822 | + | 10.9 | 0.882 | [NAME] (NM_026551, intron 1 of 4) | B3|SINE|B2 | 7740 | NM_026551 | 68087 | Mm.277449 | NM_026551 | ENSMUSG00000020935 | Dcakd | 3010024O21Rik|6720485C15Rik|AI849483|FLJ22955 | dephospho-CoA kinase domain containing
chr8-464 | chr8 | 81295324 | 81295526 | + | 10.9 | 0.737 | Intergenic | Intergenic | 49626 | NM_001191004 | 78651 | Mm.28694 | NM_001191004 | ENSMUSG00000031683 | Lsm6 | 1500031N17Rik|2410088K19Rik|AI747288|MGC117708 | LSM6 homolog, U6 small nuclear RNA associated (S. cerevisiae)
chr1-125 | chr1 | 47863030 | 47863232 | + | 10.9 | 0.889 | Intergenic | Intergenic | -952777 | NM_172653 | 227059 | Mm.475398 | NM_172653 | ENSMUSG00000025986 | Slc39a10 | 2900042E17Rik|5430433I10|mKIAA1265 | solute carrier family 39 (zinc transporter), member 10
chr11-205 | chr11 | 75318049 | 75318251 | + | 10.9 | 0.875 | [NAME], intron 34 of 41) | [NAME], intron 34 of 41) | -5446 | NM_001029938 | 280408 | Mm.41416 | NM_001029938 | ENSMUSG00000038195 | Rilp | AI835553|Gm857|RP23-384C18.10 | Rab interacting lysosomal protein
chr7-112 | chr7 | 133590571 | 133590773 | + | 10.9 | 0.778 | exon (NM_007504, exon 20 of 23) | exon (NM_007504, exon 20 of 23) | 15915 | NM_007504 | 11937 | Mm.35134 | NM_007504 | ENSMUSG00000030730 | Atp2a1 | SERCA1 | ATPase, Ca++ transporting, cardiac muscle, fast twitch 1
chr5-89 | chr5 | 130385600 | 130385802 | + | 10.9 | 0.882 | intron (NM_026916, intron 1 of 2) | MTD|LTR|MaLR | 1291 | NM_026916 | 69034 | Mm.211372 | NM_026916 |  | 4930579G22Rik | 1810010E01Rik | RIKEN cDNA 4930579G22 gene
chr1-134 | chr1 | 85099640 | 85099842 | + | 10.9 | 0.812 | intron (NM_213615, intron 1 of 6) | Charlie1b|DNA|MER1_type | 6687 | NM_213615 | 381287 | Mm.487565 | NM_213615 | ENSMUSG00000079459 | A530032D15Rik | Gm1888|MGC130185|MGC130186 | RIKEN cDNA A530032D15Rik gene
chr8-546 | chr8 | 113541243 | 113541445 | + | 10.9 | 0.737 | promoter-TSS (NR_039583) | promoter-TSS (NR_039583) | -914 | NR_039583 | 100628592 |  | NR_039583 |  | Mir3473d | mmu-mir-3473d | microRNA 3473d
chr19-51 | chr19 | 24366999 | 24367201 | + | 10.9 | 0.789 | Intergenic | HAL1|LINE|L1 | -12024 | NM_008044 | 14297 | Mm.7319 | NM_008044 | ENSMUSG00000059363 | Fxn | [NAME] | frataxin
chr11-236 | chr11 | 107309410 | 107309612 | + | 10.9 | 0.722 | [NAME] (NM_145823, intron 1 of 9) | [NAME] (NM_145823, intron 1 of 9) | 22523 | NM_145823 | 71795 | Mm.476186 | NM_145823 | ENSMUSG00000040430 | Pitpnc1 | 1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|MGC118005|RDGBB|RDGBB1|rdgB-beta | phosphatidylinositol transfer protein, cytoplasmic 1
chr3-47 | chr3 | 100725883 | 100726085 | + | 10.9 | 0.667 | promoter-TSS (NM_001165953) | promoter-TSS (NM_001165953) | -432 | [NAME] | 229644 | Mm.189351 | [NAME] | ENSMUSG00000033233 | Trim45 | 4921530N01Rik | tripartite motif-containing 45
chr14-64 | chr14 | 37724950 | 37725152 | + | 10.9 | 0.857 | [NAME] (NM_027045, intron 5 of 10) | Lx8|LINE|L1 | 23703 | NM_028407 | 72972 | [NAME] | NM_027045 | ENSMUSG00000058690 | Gcap14 | 1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b | granule cell antiserum positive 14
chr9-101 | chr9 | 121294304 | 121294506 | + | 10.9 | 0.65 | intron (NM_175114, intron 1 of 15) | intron (NM_175114, intron 1 of 15) | 18329 | NM_175114 | 67095 | Mm.489616 | NM_175114 | ENSMUSG00000032536 | Trak1 | 2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042 | trafficking protein, [NAME] binding 1
chr16-62 | chr16 | 96566801 | 96567003 | + | 10.9 | 0.684 | Intergenic | Intergenic | -16462 | NM_001177887 | 72058 | [NAME] | NM_001177886 | ENSMUSG00000000159 | Igsf5 | 2010003D20Rik|JCAM|Jam4 | immunoglobulin superfamily, member 5
chr10-60 | chr10 | 41994337 | 41994539 | + | 10.9 | 0.714 | [NAME] (NM_019740, intron 2 of 3) | [NAME] (NM_019740, intron 2 of 3) | 2110 | NM_019740 | 56484 | Mm.466459 | NM_019740 | ENSMUSG00000048756 | Foxo3 | 1110048B16Rik|2010203A17Rik|C76856|FKHRL1|Fkhr2|Foxo3a | forkhead box O3
chr16-55 | chr16 | 59586785 | 59586987 | + | 10.9 | 0.652 | Intergenic | Intergenic | -31308 | NM_174848 | 224273 | Mm.246424 | NM_174848 | ENSMUSG00000022723 | Crybg3 | 5031404N19|AU022790|MGC58045 | beta-gamma crystallin domain containing 3
chr7-94 | chr7 | 52525890 | 52526092 | + | 10.9 | 0.632 | Intergenic | Intergenic | -12252 | NM_001033176 | 76713 | Mm.425445 | NM_001033176 | ENSMUSG00000070568 | 1700039E15Rik | Gm19188 | RIKEN cDNA 1700039E15 gene
chr13-65 | chr13 | 41008798 | 41009000 | + | 10.9 | 0.706 | intron (NM_008105, intron 1 of 2) | intron (NM_008105, intron 1 of 2) | -4104 | NM_133219 | 14538 | Mm.314757 | NM_008105 | ENSMUSG00000021360 | Gcnt2 | 5330430K10Rik|IGnT|IGnTA|IGnTB|IGnTC | glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
chr14-99 | chr14 | 100183254 | 100183456 | + | 10.9 | 0.696 | Intergenic | Intergenic | 365660 | NM_010636 | 16597 | Mm.458816 | NM_010636 | ENSMUSG00000072294 | Klf12 | 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik | Kruppel-like factor 12
chr6-179 | chr6 | 115725617 | 115725819 | + | 10.9 | 0.737 | [NAME] (NM_025958, intron 1 of 14) | MIR|SINE|MIR | 1143 | NM_025958 | 67088 | Mm.277683 | NM_025958 | ENSMUSG00000030319 | Cand2 | 2210404G23Rik|Tp120b|mKIAA0667 | cullin-associated and neddylation-dissociated 2 (putative)
chr8-497 | chr8 | 95974335 | 95974537 | + | 10.9 | 0.895 | Intergenic | L1Md_F|LINE|L1 | 85171 | NM_001003951 | 67935 | Mm.390064 | NM_001003951 | ENSMUSG00000058019 | Ces5a | 1700081L16Rik|1700122C07Rik|BB081581|Ces7|Gm503|cauxin | carboxylesterase 5A
chr10-80 | chr10 | 126571031 | 126571233 | + | 10.9 | 0.9 | Intergenic | MTE-int|LTR|MaLR | -12916 | NM_001171026 | 216440 | Mm.295246 | NM_001171026 | ENSMUSG00000040462 | Os9 | 4632413K17Rik|AU022351 | amplified in osteosarcoma
chr5-90 | chr5 | 130948186 | 130948388 | + | 10.9 | 0.75 | [NAME] (NM_021371, intron 1 of 5) | [NAME] (NM_021371, intron 1 of 5) | 23625 | NM_021371 | 140904 | [NAME] | NM_021371 | ENSMUSG00000060371 | Caln1 | 9630012C17Rik|Cabp8 | calneuron 1
chr10-69 | chr10 | 80119379 | 80119581 | + | 10.9 | 0.652 | 5' UTR (NM_145361, exon 1 of 9) | 5' UTR (NM_145361, exon 1 of 9) | 336 | NM_145361 | 208198 | Mm.60720 | NM_145361 | ENSMUSG00000003344 | Btbd2 | 2610037C03Rik|4930512K17Rik | BTB (POZ) domain containing 2
chr2-67 | chr2 | 160276510 | 160276712 | + | 10.9 | 0.889 | Intergenic | Intergenic | -83810 | NM_010658 | 16658 | Mm.330745 | NM_010658 | ENSMUSG00000074622 | Mafb | Kreisler|Krml|Krml1|kr | v-maf musculoaponeurotic fibrosarcoma oncogene family, protein B (avian)
chr7-88 | chr7 | 50430813 | 50431015 | + | 10.9 | 0.7 | Intergenic | Lx3B|LINE|L1 | -2044 | NM_001034893 | 668620 |  | NM_001034893 | ENSMUSG00000064194 | Zfp936 | EG435970|EG668620|Gm9272|I1C0022H11Rik|MGC76792 | zinc finger protein 936
chr9-74 | chr9 | 46916905 | 46917107 | + | 10.9 | 0.882 | Intergenic | Intergenic | 110182 | NM_001243258 | 215467 | Mm.246572 | NM_001243258 |  | Gm4791 | D930036J05 | predicted gene 4791
chr1-161 | chr1 | 162722142 | 162722344 | + | 10.9 | 0.765 | intron (NM_013862, intron 1 of 20) | CpG | 826 | NM_013862 | 29809 | Mm.25833 | NM_001038621 | ENSMUSG00000026721 | Rabgap1l | 5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471 | RAB GTPase activating protein 1-like
chr6-252 | chr6 | 147265687 | 147265889 | + | 10.9 | 0.778 | Intergenic | Intergenic | -53181 | NM_008970 | 19227 | Mm.28440 | NM_008970 | ENSMUSG00000048776 | Pthlh | PTH-like|Pthrp | parathyroid hormone-like peptide
chr7-81 | chr7 | 27444969 | 27445171 | + | 10.9 | 0.789 | Intergenic | L1Md_F|LINE|L1 | 26379 | NM_001081148 | 243881 | Mm.294678 | NM_001081148 | ENSMUSG00000040650 | Cyp2b23 | EG243881 | cytochrome P450, family 2, subfamily b, polypeptide 23
chr12-386 | chr12 | 87006793 | 87006995 | + | 10.9 | 0.609 | Intergenic | Intergenic | -20776 | NM_016767 | 53314 | Mm.6672 | NM_016767 | ENSMUSG00000034266 | [NAME] | B-ATF|SFA-2 | basic leucine zipper transcription factor, ATF-like
chr7-106 | chr7 | 87532448 | 87532650 | + | 10.9 | 0.7 | intron (NM_010194, intron 1 of 18) | intron (NM_010194, intron 1 of 18) | 283 | NM_010194 | 14159 | Mm.48757 | NM_010194 | ENSMUSG00000053158 | Fes | AI586313|BB137047|FPS|c-fes | feline sarcoma oncogene
chr4-197 | chr4 | 120341185 | 120341387 | + | 10.9 | 0.778 | TTS (NM_019563) | TTS (NM_019563) | 2118 | NM_019563 | 56222 | Mm.272646 | NM_019563 | ENSMUSG00000070803 | Cited4 | MRG-2|Mrg2 | Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4
chr2-61 | chr2 | 129008595 | 129008797 | + | 10.9 | 0.882 | Intergenic | Intergenic | -2287 | NR_045264 | 100048701 | Mm.428544 | NR_045264 |  | AI847159 | OTTMUSG00000015420 | expressed sequence AI847159
chr12-540 | chr12 | 109072702 | 109072904 | + | 10.9 | 0.737 | Intergenic | Intergenic | -99105 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr8-428 | chr8 | 19171420 | 19171622 | + | 10.9 | 0.778 | Intergenic | L1Md_F2|LINE|L1 | 13634 | [NAME] | 78128 | Mm.229357 | [NAME] | ENSMUSG00000079842 | Spag11a | 9230111C08Rik|Bin1b|EP2Q|EP2e|Spag11 | sperm associated antigen 11A
chr5-96 | chr5 | 145965358 | 145965560 | + | 10.9 | 0.609 | promoter-TSS (NM_001167944) | promoter-TSS (NM_001167944) | 31 | NM_001167944 | 22757 | Mm.332842 | NM_001167944 | ENSMUSG00000055991 | Zkscan5 | AI132486|AI326970|Zfp95|hKraba1 | zinc finger with KRAB and SCAN domains 5
chr12-512 | chr12 | 106953631 | 106953833 | + | 10.9 | 0.833 | [NAME] (NM_030187, intron 3 of 17) | [NAME] (NM_030187, intron 3 of 17) | 9540 | NM_030187 | 78801 | Mm.36006 | NM_030187 | ENSMUSG00000041323 | Ak7 | 4930502N02Rik | adenylate kinase 7
chr16-38 | chr16 | 3265630 | 3265832 | + | 10.9 | 0.682 | Intergenic | Lx2|LINE|L1 | -326667 | NM_146860 | 258859 | Mm.377723 | NM_146860 | ENSMUSG00000051003 | Olfr161 | MOR131-1|OR912-47M6 | olfactory receptor 161
chr6-248 | chr6 | 145300386 | 145300588 | + | 10.9 | 0.765 | Intergenic | Intergenic | -35658 | NR_003625 | 381827 | Mm.483170 | NR_003625 |  | 1700073E17Rik | - | ribosomal protein L7 pseudogene
chr11-251 | chr11 | 121037280 | 121037482 | + | 10.9 | 0.609 | Intergenic | Intergenic | 15796 | NM_145440 | 217369 | Mm.20122 | NM_145440 | ENSMUSG00000039321 | Uts2r | Gpr14|UR-2-R|UTR|UTR2 | urotensin 2 receptor
chr8-534 | chr8 | 110135963 | 110136165 | + | 10.9 | 0.737 | Intergenic | Intergenic | -23682 | NM_010817 | 17463 | Mm.18347 | NM_010817 | ENSMUSG00000039067 | Psmd7 | AW107203|Mov-34|Mov34 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
chr13-72 | chr13 | 64376370 | 64376572 | + | 10.9 | 0.667 | promoter-TSS (NM_172587) | promoter-TSS (NM_172587) | -175 | NM_172587 | 218294 | Mm.25335 | NM_001122989 | ENSMUSG00000033102 | Cdc14b | 2810432N10Rik|A530086E13Rik|AA472821|CDC14B3|Cdc14B1 | CDC14 cell division cycle 14 homolog B (S. cerevisiae)
chr4-183 | chr4 | 117354715 | 117354917 | + | 10.9 | 0.7 | promoter-TSS (NM_023178) | promoter-TSS (NM_023178) | 14 | NM_023178 | 66233 | Mm.29142 | NM_023178 | ENSMUSG00000009640 | Dmap1 | 1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425 | DNA methyltransferase 1-associated protein 1
chr8-443 | chr8 | 27044167 | 27044369 | + | 10.9 | 0.941 | [NAME] (NM_008432, intron 25 of 26) | [NAME] (NM_008432, intron 25 of 26) | 42948 | NM_029884 | 52120 | Mm.28326 | NM_133970 | ENSMUSG00000037260 | Hgsnat | 9430010M12Rik|AW208455|D8Ertd354e|Tmem76 | heparan-alpha-glucosaminide N-acetyltransferase
chr16-39 | chr16 | 8759204 | 8759406 | + | 10.9 | 0.81 | Intergenic | MTC|LTR|MaLR | -20870 | NM_001003918 | 252870 | Mm.295330 | NM_001003918 | ENSMUSG00000022710 | Usp7 | 2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp | ubiquitin specific peptidase 7
chr18-38 | chr18 | 38271478 | 38271680 | + | 10.9 | 0.778 | Intergenic | Intergenic | 97837 | NM_029357 | 75599 | Mm.458851 | NM_029357 | ENSMUSG00000051375 | Pcdh1 | 2010005A06Rik|AI585920 | protocadherin 1
chr8-438 | chr8 | 25549122 | 25549324 | + | 10.9 | 0.577 | exon (NM_026931, exon 1 of 1) | exon (NM_026931, exon 1 of 1) | 195 | [NAME] | 69068 | Mm.25775 | [NAME] | ENSMUSG00000056313 | 1810011O10Rik | 1110065B09Rik|AW121743|AW321058 | RIKEN cDNA 1810011O10 gene
chr14-80 | chr14 | 98567627 | 98567829 | + | 10.9 | 0.706 | exon (NM_007826, exon 1 of 12) | exon (NM_007826, exon 1 of 12) | 1034 | NM_001038610 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr6-160 | chr6 | 95166700 | 95166902 | + | 10.9 | 0.75 | Intergenic | RSINE1|SINE|B4 | 98901 | NM_001008785 | 243574 | Mm.333275 | NM_001008785 | ENSMUSG00000030031 | Kbtbd8 | AU040152|MGC91215|SSEC-51|SSEC51|Takrp|mKIAA1842 | kelch repeat and BTB (POZ) domain containing 8
chr14-67 | chr14 | 52633402 | 52633604 | + | 10.9 | 0.765 | [NAME] (NM_027248, intron 1 of 4) | [NAME] (NM_027248, intron 1 of 4) | 730 | NM_001253695 | 69890 | Mm.475652 | NM_001253694 | ENSMUSG00000049295 | Zfp219 | 2010302A17Rik | zinc finger protein 219
chr11-194 | chr11 | 35483696 | 35483898 | + | 10.9 | 0.778 | [NAME] (NM_011412, intron 27 of 35) | MIRb|SINE|MIR | 53479 | NR_029799 | 723924 |  | NR_029799 |  | Mir218-2 | Mirn218-2|mir-218-2 | microRNA 218-2
chr8-551 | chr8 | 116493683 | 116493885 | + | 10.9 | 0.875 | Intergenic | LTR16A1|LTR|ERVL | -121045 | NM_172466 | 208936 | Mm.167471 | NM_172466 | ENSMUSG00000053399 | Adamts18 | 9630038L21|ADAMTS21|E130314N14Rik | a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18
chr8-610 | chr8 | 127724357 | 127724559 | + | 10.9 | 0.571 | [NAME] (NM_174854, intron 9 of 12) | [NAME] (NM_174854, intron 9 of 12) | 146363 | NM_174854 | 244667 | [NAME] | NM_170596 | ENSMUSG00000043051 | Disc1 | - | disrupted in schizophrenia 1
chr4-161 | chr4 | 103580205 | 103580407 | + | 10.9 | 0.938 | Intergenic | MLT1A1|LTR|MaLR | -459859 | NM_010014 | 13131 | Mm.289682 | NM_010014 | ENSMUSG00000028519 | Dab1 | AI956902|C630028C02Rik|scm|scr|scrambler|yot | disabled homolog 1 (Drosophila)
chrX-37 | chrX | 148450557 | 148450759 | + | 10.9 | 0.65 | promoter-TSS (NM_019710) | promoter-TSS (NM_019710) | 180 | NM_025660 | 66611 | Mm.158120 | NM_025660 | ENSMUSG00000025257 | Ribc1 | 2610028I09Rik|W08639 | [NAME] domain with coiled-coils 1
chr4-217 | chr4 | 152959665 | 152959867 | + | 10.9 | 0.857 | Intergenic | Intergenic | -102827 | NM_001099299 | 230959 | Mm.318874 | NM_001099299 | ENSMUSG00000039546 | Ajap1 | Gm573 | adherens junction associated protein 1
chr4-168 | chr4 | 108251852 | 108252054 | + | 10.9 | 0.619 | promoter-TSS (NM_011015) | promoter-TSS (NM_011015) | -12 | NM_172697 | 230596 | Mm.157534 | NM_172697 | ENSMUSG00000063800 | Prpf38a | 2410002M20Rik | PRP38 pre-mRNA processing factor 38 (yeast) domain containing A
chr12-430 | chr12 | 95806317 | 95806519 | + | 10.9 | 0.824 | Intergenic | Intergenic | -1124018 | NM_201518 | 399558 | Mm.341948 | NM_201518 | ENSMUSG00000047414 | Flrt2 | KIAA0405 | fibronectin leucine rich transmembrane protein 2
chr8-502 | chr8 | 97336579 | 97336781 | + | 10.9 | 0.524 | TTS (NM_011332) | TTS (NM_011332) | 2327 | NM_011332 | 20295 | Mm.41988 | NM_011332 | ENSMUSG00000031780 | Ccl17 | Abcd-2|Scya17|Scya17l|Tarc | chemokine (C-C motif) ligand 17
chr8-483 | chr8 | 90118342 | 90118544 | + | 10.9 | 0.632 | Intergenic | Intergenic | 30637 | NM_177901 | 330820 | Mm.212913 | NM_177901 | ENSMUSG00000069971 | 4933402J07Rik | - | RIKEN cDNA 4933402J07 gene
chr4-201 | chr4 | 124387430 | 124387632 | + | 10.9 | 0.8 | Intergenic | Intergenic | -4574 | NM_029157 | 75062 | Mm.25779 | NM_029157 | ENSMUSG00000028902 | Sf3a3 | 4930512K19Rik|60kDa|MGC103282 | splicing factor 3a, subunit 3
chr18-39 | chr18 | 42670758 | 42670960 | + | 10.9 | 0.727 | promoter-TSS (NM_001039474) | promoter-TSS (NM_001039474) | -282 | NM_001039474 | 56070 | [NAME] | NM_001039474 | ENSMUSG00000024498 | Tcerg1 | 2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144 | transcription elongation regulator 1 (CA150)
chr4-178 | chr4 | 116856248 | 116856450 | + | 10.9 | 0.8 | Intergenic | Intergenic | -1120 | NM_134471 | 73804 | Mm.247651 | NM_134471 | ENSMUSG00000028678 | Kif2c | 4930402F02Rik|ESTM5|Knsl6|MCAK|MGC11883|X83316 | [NAME] member 2C
chr6-158 | chr6 | 38474368 | 38474570 | + | 10.9 | 0.667 | Intergenic | Intergenic | -10392 | NM_025363 | 66117 | Mm.158971 | NM_025363 | ENSMUSG00000019689 | 1110001J03Rik | Fmc1 | RIKEN cDNA 1110001J03 gene
chr4-215 | chr4 | 150275831 | 150276033 | + | 10.9 | 0.778 | intron (NM_020569, intron 5 of 6) | intron (NM_020569, intron 5 of 6) | 8098 | NM_020569 | 57320 | Mm.277349 | NM_020569 | ENSMUSG00000028964 | Park7 | DJ-1|Dj1 | Parkinson disease (autosomal recessive, early onset) 7
chr2-53 | chr2 | 79502454 | 79502656 | + | 10.9 | 0.812 | exon (NM_080558, exon 16 of 18) | exon (NM_080558, exon 16 of 18) | 26973 | NM_080558 | 70599 | Mm.272881 | NM_080558 | ENSMUSG00000027007 | Ssfa2 | 5730488C15Rik|CS-1|CS1|KRAP|SPAG13|mKIAA1927 | sperm specific antigen 2
chr1-166 | chr1 | 191994132 | 191994334 | + | 10.9 | 0.778 | 5' UTR (NM_008937, exon 1 of 5) | 5' UTR (NM_008937, exon 1 of 5) | 326 | NM_008937 | 19130 | Mm.392678 | NM_008937 | ENSMUSG00000010175 | Prox1 | A230003G05Rik | prospero-related homeobox 1
chr8-450 | chr8 | 34770943 | 34771145 | + | 10.9 | 0.737 | intron (NM_010344, intron 1 of 12) | intron (NM_010344, intron 1 of 12) | 7334 | NM_010344 | 14782 | Mm.489635 | NM_010344 | ENSMUSG00000031584 | Gsr | AI325518|D8Ertd238e|Gr-1|Gr1 | glutathione reductase
chr8-558 | chr8 | 120692739 | 120692941 | + | 10.9 | 0.789 | Intergenic | Intergenic | -114815 | NM_019707 | 12554 | Mm.334841 | NM_019707 | ENSMUSG00000031841 | Cdh13 | 4932416G01Rik|Cdht|T-cadherin|Tcad | cadherin 13
chr1-130 | chr1 | 74038117 | 74038319 | + | 10.9 | 0.789 | [NAME] intron 11 of 34) | [NAME] intron 11 of 34) | -127178 | NR_045311 | 109198 | Mm.359721 | NR_045311 |  | 6030407O03Rik | - | RIKEN cDNA 6030407O03 gene
chr4-219 | chr4 | 154414702 | 154414904 | + | 10.9 | 0.684 | Intergenic | Intergenic | -26336 | NM_001042407 | 668173 | Mm.133114 | NM_001042407 | ENSMUSG00000029047 | Pex10 | AV128229|Gm142 | peroxisomal biogenesis factor 10
chr12-522 | chr12 | 107533870 | 107534072 | + | 10.9 | 0.842 | Intergenic | RMER6A|LTR|ERVK | 151905 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr8-557 | chr8 | 120523498 | 120523700 | + | 10.9 | 0.7 | Intergenic | Intergenic | -197770 | NM_026758 | 68533 | Mm.181836 | NM_026758 | ENSMUSG00000031843 | Mphosph6 | 1110001M01Rik|AA536809|C86426 | M phase phosphoprotein 6
chr3-40 | chr3 | 78907865 | 78908067 | + | 10.9 | 0.833 | exon (NM_001099624, exon 3 of 24) | exon (NM_001099624, exon 3 of 24) | 41831 | NM_001099624 | 76089 | Mm.462396 | NM_001099624 | ENSMUSG00000062232 | Rapgef2 | 5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP | Rap guanine nucleotide exchange factor (GEF) 2
chr13-71 | chr13 | 55611809 | 55612011 | + | 10.9 | 0.545 | [NAME] ([NAME], intron 2 of 12) | [NAME] ([NAME], intron 2 of 12) | 2890 | NM_026131 | 67399 | Mm.275648 | NM_001114087 | ENSMUSG00000021493 | Pdlim7 | 1110003B01Rik|2410002J21Rik|AV007930|Enigma | PDZ and LIM domain 7
chr3-43 | chr3 | 89200333 | 89200535 | + | 10.9 | 0.895 | [NAME] (NR_040404, intron 1 of 1) | [NAME] (NR_040404, intron 1 of 1) | 2222 | NR_040404 | 545539 | Mm.393389 | NR_040403 |  | Gm15417 | ENSMUSG00000074466|OTTMUSG00000021274 | predicted gene 15417
chr8-479 | chr8 | 89318703 | 89318905 | + | 10.9 | 0.667 | Intergenic | Intergenic | -48899 | NM_009172 | 20437 | Mm.324553 | NM_009172 | ENSMUSG00000036840 | Siah1a | AA982064|AI853500|Sinh1a | seven in absentia 1A
chr7-72 | chr7 | 6123527 | 6123729 | + | 10.9 | 0.565 | promoter-TSS (NM_001146024) | promoter-TSS (NM_001146024) | -487 | NM_028316 | 72667 | Mm.274089 | NM_001146024 | ENSMUSG00000044876 | Zfp444 | 2810031J10Rik|6230401O10Rik|FLJ00134|mFLJ00134 | zinc finger protein 444
chr8-404 | chr8 | 8655234 | 8655436 | + | 10.9 | 0.75 | [NAME] (NM_010111, intron 1 of 4) | [NAME] (NM_010111, intron 1 of 4) | 5438 | NM_010111 | 13642 | Mm.209813 | NM_010111 | ENSMUSG00000001300 | Efnb2 | ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 | ephrin B2
chr7-121 | chr7 | 148155318 | 148155520 | + | 10.9 | 0.882 | exon (NM_026820, exon 3 of 3) | exon (NM_026820, exon 3 of 3) | 1444 | NM_001112715 | 68713 | Mm.175661 | NM_001112715 | ENSMUSG00000025491 | Ifitm1 | 1110036C17Rik|MGC107121|Mil-2|Mil2 | interferon induced transmembrane protein 1
chr14-93 | chr14 | 99783903 | 99784105 | + | 10.9 | 0.778 | Intergenic | MTD|LTR|MaLR | 86094 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr5-86 | chr5 | 124876822 | 124877024 | + | 10.9 | 0.8 | promoter-TSS (NM_001081203) | promoter-TSS (NM_001081203) | -1000 | NM_001081203 | 243272 | Mm.439104 | NM_001081203 | ENSMUSG00000038095 | Sbno1 | 9330180L10Rik|AI849128|AW557836|BC021875|MGC28589|Sbno|mSno1|sno | sno, strawberry notch homolog 1 (Drosophila)
[NAME] | chr14 | 99856089 | 99856291 | + | 10.9 | 0.667 | Intergenic | Intergenic | 158280 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr12-440 | chr12 | 100410404 | 100410606 | + | 10.9 | 0.875 | Intergenic | B3|SINE|B2 | -9487 | NR_038130 | 67639 | Mm.87374 | NR_038130 |  | 4930474N09Rik | - | RIKEN cDNA 4930474N09 gene
chr12-532 | chr12 | 108266557 | 108266759 | + | 10.9 | 0.722 | Intergenic | Intergenic | -312124 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr15-42 | chr15 | 55096363 | 55096565 | + | 10.9 | 0.778 | Intergenic | RMER10B|LTR|ERVL | -42841 | NM_181277 | 12818 | Mm.297859 | NM_181277 | ENSMUSG00000022371 | Col14a1 | 5730412L22Rik|AW108078 | collagen, type XIV, alpha 1
chr11-235 | chr11 | 107273943 | 107274145 | + | 10.9 | 0.789 | [NAME] (NM_145823, intron 1 of 9) | [NAME] (NM_145823, intron 1 of 9) | 57990 | NM_145823 | 71795 | Mm.476186 | NM_145823 | ENSMUSG00000040430 | Pitpnc1 | 1110020B03Rik|5830436L09Rik|AI662802|AI851387|C330017I21Rik|Dnr411|MGC118005|RDGBB|RDGBB1|rdgB-beta | phosphatidylinositol transfer protein, cytoplasmic 1
chr1-120 | chr1 | 26741719 | 26741921 | + | 10.9 | 0.789 | exon (NM_001033764, exon 2 of 2) | exon (NM_001033764, exon 2 of 2) | 2485 | NM_001033764 | 210940 | Mm.297614 | NM_001033764 | ENSMUSG00000073722 | 4931408C20Rik | - | RIKEN cDNA 4931408C20 gene
chr16-53 | chr16 | 57607196 | 57607398 | + | 10.9 | 0.778 | promoter-TSS (NM_025599) | promoter-TSS (NM_025599) | -317 | NM_025599 | 66497 | Mm.425976 | NM_025599 | ENSMUSG00000022748 | 2610528E23Rik | 1110001A06Rik|4930572F24Rik|AV099812|AV122629 | RIKEN cDNA 2610528E23 gene
chr11-240 | chr11 | 115335457 | 115335659 | + | 10.9 | 0.536 | 3' UTR (NM_001080934, exon 4 of 4) | 3' UTR (NM_001080934, exon 4 of 4) | -1433 | NM_177778 | 276905 | Mm.38019 | NM_177778 | ENSMUSG00000057219 | Armc7 | A630084C13|BC023126|MGC27721 | armadillo repeat containing 7
chr19-37 | chr19 | 4152742 | 4152944 | + | 10.9 | 0.714 | intron (NM_011778, intron 9 of 10) | intron (NM_011778, intron 9 of 10) | -1803 | NM_016933 | 19265 | Mm.329686 | NM_016933 | ENSMUSG00000045826 | Ptprcap | AI605264|CD-45-AP|LPAP|LSM-1 | protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
chr12-470 | chr12 | 103518852 | 103519054 | + | 10.9 | 0.65 | Intergenic | Intergenic | -2331 | NM_177620 | 217835 | Mm.24145 | NM_001161365 | ENSMUSG00000044456 | Rin3 | 6430500K07|C86933 | [NAME] and Rab interactor 3
chr8-527 | chr8 | 108480412 | 108480614 | + | 10.9 | 0.778 | [NAME] (NM_009195, intron 3 of 23) | [NAME] (NM_009195, intron 3 of 23) | 9502 | NM_001253804 | 20498 | Mm.396326 | NM_001253804 | ENSMUSG00000017765 | Slc12a4 | AW546649|KCC1|RBCKCC1 | solute carrier family 12, member 4
chr2-63 | chr2 | 139504702 | 139504904 | + | 10.9 | 0.706 | [NAME] (NM_001126490, intron 1 of 5) | [NAME] (NM_001126490, intron 1 of 5) | 889 | NM_001126490 | 319909 | Mm.41113 | NM_001126490 | ENSMUSG00000074766 | Ism1 | 5430433G21Rik|AV354986|Ism|Isthmin | isthmin 1 homolog (zebrafish)
chr4-172 | chr4 | 111269934 | 111270136 | + | 10.9 | 0.619 | intron (NM_030231, intron 9 of 12) | intron (NM_030231, intron 9 of 12) | -122580 | NM_026470 | 67946 | Mm.275526 | NM_026470 | ENSMUSG00000034401 | Spata6 | 1700062C23Rik|AI790763|Hash|KRP|Mash | spermatogenesis associated 6
chr14-79 | chr14 | 84848090 | 84848292 | + | 10.9 | 0.737 | exon (NM_001013753, exon 1 of 4) | exon (NM_001013753, exon 1 of 4) | 4821 | NM_001013753 | 219228 | Mm.153643 | NM_001013753 | ENSMUSG00000035566 | Pcdh17 | C030033F14Rik|Gm78 | protocadherin 17
chr19-36 | chr19 | 3378390 | 3378592 | + | 10.9 | 0.706 | exon (NM_013495, exon 15 of 19) | exon (NM_013495, exon 15 of 19) | -10378 | NM_001039658 | 17771 | Mm.209941 | NM_010841 | ENSMUSG00000024905 | Mtl5 | tesmin | metallothionein-like 5, testis-specific (tesmin)
chr14-76 | chr14 | 76966691 | 76966893 | + | 10.9 | 0.75 | Intergenic | Intergenic | -10096 | NR_027699 | 72661 | Mm.320384 | NM_001160326 | ENSMUSG00000052584 | Serp2 | 2810032E02Rik|MGC118314 | stress-associated endoplasmic reticulum protein family member 2
chr4-202 | chr4 | 126143186 | 126143388 | + | 10.9 | 0.682 | [NAME] (NM_153403, intron 1 of 18) | [NAME] (NM_153403, intron 1 of 18) | 2378 | NM_153403 | 236511 | Mm.30800 | NM_153403 | ENSMUSG00000041530 | Eif2c1 | Ago1 | eukaryotic translation initiation factor 2C, 1
chr18-47 | chr18 | 90679257 | 90679459 | + | 10.9 | 0.789 | promoter-TSS (NM_198295) | promoter-TSS (NM_198295) | -188 | NM_198295 | 67988 | Mm.268041 | NM_198295 | ENSMUSG00000024614 | Tmx3 | 6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830 | thioredoxin-related transmembrane protein 3
chr12-419 | chr12 | 88373193 | 88373395 | + | 10.9 | 0.762 | intron (NM_172583, intron 1 of 24) | intron (NM_172583, intron 1 of 24) | 5780 | NM_172583 | 217733 | Mm.110032 | NM_172583 | ENSMUSG00000034145 | [NAME] | 4932420N09|9330187M14Rik | [NAME] 63c
chr1-156 | chr1 | 138848713 | 138848915 | + | 10.9 | 0.765 | [NAME] (NM_030676, intron 1 of 8) | [NAME] (NM_030676, intron 1 of 8) | 1393 | NM_001159769 | 26424 | Mm.16794 | NM_001159769 | ENSMUSG00000026398 | Nr5a2 | [NAME] | nuclear receptor subfamily 5, group A, member 2
chr13-69 | chr13 | 53792226 | 53792428 | + | 10.9 | 0.778 | Intergenic | Intergenic | -224178 | NM_013601 | 17702 | Mm.1763 | NM_013601 | ENSMUSG00000021469 | Msx2 | BB122635|Hox-8|Hox8|Hox8.1 | homeobox, msh-like 2
chr19-48 | chr19 | 24224772 | 24224974 | + | 10.9 | 0.882 | [NAME] (NM_011597, intron 1 of 22) | [NAME] (NM_011597, intron 1 of 22) | 23757 | NM_001198985 | 21873 | Mm.104744 | NM_001198985 | ENSMUSG00000024812 | Tjp2 | ZO-2 | tight junction protein 2
chr4-146 | chr4 | 42964696 | 42964898 | + | 10.9 | 0.722 | Intergenic | Intergenic | -1169 | NM_019874 | 56323 | Mm.20437 | NM_019874 | ENSMUSG00000036052 | Dnajb5 | 1110058L06Rik|AI462558|Hsc40|Hsp40-3 | DnaJ (Hsp40) homolog, subfamily B, member 5
chr3-51 | chr3 | 104621535 | 104621737 | + | 10.9 | 0.667 | promoter-TSS (NM_001163441) | promoter-TSS (NM_001163441) | -155 | NM_001163440 | 17454 | Mm.1597 | NM_001163440 | ENSMUSG00000002227 | Mov10 | C77703|Mov-10 | Moloney leukemia virus 10
chr19-60 | chr19 | 45367203 | 45367405 | + | 10.9 | 0.765 | Intergenic | Intergenic | -57578 | NM_010691 | 16814 | Mm.116815 | NM_010691 | ENSMUSG00000025216 | Lbx1 | Lbx1h | [NAME] homolog 1 (Drosophila)
chr11-201 | chr11 | 67288267 | 67288469 | + | 10.9 | 0.65 | Intergenic | Intergenic | -58132 | NM_008088 | 14457 | Mm.152121 | NM_001109657 | ENSMUSG00000033066 | Gas7 | AW124766|B230343A10Rik|Gas7-cb | growth arrest specific 7
chr18-37 | chr18 | 36614097 | 36614299 | + | 10.9 | 0.737 | promoter-TSS (NM_026027) | promoter-TSS (NM_026027) | -49 | NM_026027 | 67199 | Mm.30184 | NM_026027 | ENSMUSG00000024346 | Pfdn1 | 2700086I23Rik|AA408327|AU044714 | prefoldin 1
chr6-232 | chr6 | 135146809 | 135147011 | + | 10.9 | 0.591 | Intergenic | Intergenic | -1095 | NM_028982 | 74525 | Mm.34182 | NM_028982 | ENSMUSG00000030207 | 8430419L09Rik | KIAA1467|Kiaa1467|mKIAA1467 | RIKEN cDNA 8430419L09 gene
chr6-225 | chr6 | 128385864 | 128386066 | + | 10.9 | 0.722 | [NAME] (NM_010219, intron 2 of 9) | [NAME] (NM_010219, intron 2 of 9) | 2684 | NM_010219 | 14228 | Mm.12758 | NM_010219 | ENSMUSG00000030357 | Fkbp4 | 59kDa|AL022792|AW208983|FKBP-4|FKBP-52|FKBP52|FKPB52|p59 | FK506 binding protein 4
chr6-197 | chr6 | 121588253 | 121588455 | + | 10.9 | 0.778 | exon (NM_175628, exon 2 of 36) | exon (NM_175628, exon 2 of 36) | 2163 | NM_175628 | 232345 | Mm.30151 | NM_175628 | ENSMUSG00000030111 | A2m | [NAME] | [NAME]
chr3-60 | chr3 | 138539573 | 138539775 | + | 10.9 | 0.609 | intron (NM_019571, intron 2 of 7) | intron (NM_019571, intron 2 of 7) | 134515 | NM_019571 | 56224 | Mm.31927 | NM_019571 | ENSMUSG00000028152 | Tspan5 | 2810455A09Rik|4930505M03Rik|AU024142|NET-4|Tm4sf9 | tetraspanin 5
chr16-58 | chr16 | 91052276 | 91052478 | + | 10.9 | 0.667 | Intergenic | Intergenic | -7753 | NM_026110 | 67367 | Mm.486412 | NM_026110 | ENSMUSG00000022974 | Gcfc1 | 1810007M14Rik|C21orf66|Gcfc | GC-rich sequence DNA-binding factor 1
chr11-213 | chr11 | 88481621 | 88481823 | + | 10.9 | 0.64 | [NAME] (NM_054043, intron 5 of 13) | [NAME] (NM_054043, intron 5 of 13) | 97821 | NM_054043 | 76626 | Mm.474737 | NM_001201341 | ENSMUSG00000069769 | Msi2 | 1700105C15Rik|AI451722|AI563628|AW489193|MGC118040|MGC130496|Msi2h | Musashi homolog 2 (Drosophila)
chr3-58 | chr3 | 135592073 | 135592275 | + | 10.9 | 0.81 | Intergenic | MTE2b|LTR|MaLR | -88941 | NR_040540 | 71038 |  | NR_040540 |  | 4933401H06Rik | - | RIKEN cDNA 4933401H06 gene
chr2-46 | chr2 | 31989351 | 31989553 | + | 10.9 | 0.789 | Intergenic | B1F2|SINE|Alu | -17216 | NM_172661 | 227723 | Mm.25504 | NM_001159634 | ENSMUSG00000039262 | Prrc2b | 5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515 | proline-rich coiled-coil 2B
chr5-71 | chr5 | 112917315 | 112917517 | + | 10.9 | 0.824 | [NAME] (NM_001253916, intron 1 of 16) | [NAME] (NM_001253916, intron 1 of 16) | 38970 | NM_001177504 | 625464 | Mm.389676 | NM_001177504 | ENSMUSG00000072722 | Gm6588 | EG625464 | predicted gene 6588
chr12-426 | chr12 | 91201329 | 91201531 | + | 10.9 | 0.778 | intron (NM_001252074, intron 1 of 6) | intron (NM_001252074, intron 1 of 6) | 150534 | NM_001252074 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr10-57 | chr10 | 22055972 | 22056174 | + | 10.9 | 0.773 | [NAME] (NM_009018, intron 5 of 5) | Lx8|LINE|L1 | -25627 | NM_020030 | 56554 | Mm.458004 | NM_020030 | ENSMUSG00000078452 | Raet1d | MGC118478|RAE-1delta | retinoic acid early transcript delta
chr10-83 | chr10 | 127746277 | 127746479 | + | 10.9 | 0.875 | [NAME] (NM_001252326, intron 6 of 25) | [NAME] (NM_001252326, intron 6 of 25) | 5987 | NM_001252326 | 103135 | Mm.489673 | NM_001252326 | ENSMUSG00000005682 | Pan2 | 1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710 | [NAME] specific ribonuclease subunit homolog (S. cerevisiae)
chr8-575 | chr8 | 123526080 | 123526282 | + | 10.9 | 0.789 | Intergenic | Intergenic | 80751 | NR_045471 | 68790 | Mm.246916 | NR_045471 |  | 1110050K14Rik | - | RIKEN cDNA 1110050K14 gene
chr17-132 | chr17 | 36232226 | 36232428 | + | 10.9 | 0.75 | Intergenic | Intergenic | -11133 | NM_008199 | 14963 | [NAME] | NM_008199 | ENSMUSG00000073406 | H2-Bl | H2-B1 | histocompatibility 2, blastocyst
chr8-545 | chr8 | 113494536 | 113494738 | + | 10.9 | 0.714 | 3' UTR (NM_009179, exon 7 of 7) | 3' UTR (NM_009179, exon 7 of 7) | 27086 | NM_007916 | 13680 | Mm.287901 | NM_007916 | ENSMUSG00000015023 | Ddx19a | DBP5|Ddx19|Eif4a-rs1 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
chr7-90 | chr7 | 52125373 | 52125575 | + | 10.9 | 0.625 | promoter-TSS (NM_133949) | promoter-TSS (NM_133949) | -316 | NM_133949 | 84113 | Mm.470511 | NM_133949 | [NAME] | Ptov1 | 1110030G05Rik|AU041779|Gcap3 | prostate tumor over expressed gene 1
chr8-437 | chr8 | 24739749 | 24739951 | + | 10.9 | 0.684 | Intergenic | Intergenic | -40283 | NM_177086 | 320158 | Mm.121274 | NM_177086 | ENSMUSG00000037492 | Zmat4 | 9630048M01Rik|MGC90808 | zinc finger, matrin type 4
chr6-204 | chr6 | 124880775 | 124880977 | + | 10.9 | 0.889 | promoter-TSS (NM_145385) | promoter-TSS (NM_145385) | -530 | NM_145385 | 30853 | Mm.29737 | NM_001170341 | ENSMUSG00000030120 | Mlf2 | AI256856|AU018944|C77284 | myeloid leukemia factor 2
chr9-72 | chr9 | 46622889 | 46623091 | + | 10.9 | 0.545 | Intergenic | Intergenic | -98696 | NR_015605 | 73040 | Mm.265384 | NR_015605 |  | 2900052N01Rik | AU067665 | RIKEN cDNA 2900052N01 gene
chr14-103 | chr14 | 104201646 | 104201848 | + | 10.9 | 0.789 | Intergenic | Lx5|LINE|L1 | 41166 | NM_007904 | 13618 | Mm.229532 | NM_001136061 | ENSMUSG00000022122 | Ednrb | AU022549|ET-B|ET>B<|ETR-b|ETb|Sox10m1|s | endothelin receptor type B
chr9-87 | chr9 | 102620556 | 102620758 | + | 10.9 | 0.737 | [NAME] 1 of 9) | CpG | 523 | NM_019764 | 56332 | Mm.21145 | NM_019764 | ENSMUSG00000032531 | Amotl2 | AW549739|C79691|Lccp|MASCOT|mKIAA0989 | angiomotin-like 2
chr4-141 | chr4 | 9024232 | 9024434 | + | 10.9 | 0.778 | Intergenic | Intergenic | -172131 | NM_028940 | 74438 | Mm.473368 | NM_028940 | ENSMUSG00000041216 | Clvs1 | 4933402J24Rik|Clvl1|Rlbp1l1 | clavesin 1
chr12-516 | chr12 | 107221538 | 107221740 | + | 10.9 | 0.722 | Intergenic | ID_B1|SINE|B4 | -26834 | NM_011705 | 22367 | Mm.2981 | NM_001029843 | ENSMUSG00000021115 | Vrk1 | 51PK | vaccinia related kinase 1
chr19-58 | chr19 | 44745514 | 44745716 | + | 10.9 | 0.682 | Intergenic | Intergenic | -86269 | NM_011037 | 18504 | Mm.192158 | NM_011037 | ENSMUSG00000004231 | [NAME] | Opdc|Pax-2 | paired box gene 2
chr4-153 | chr4 | 62356771 | 62356973 | + | 10.9 | 0.818 | [NAME] (NM_134257, intron 11 of 15) | [NAME] (NM_134257, intron 11 of 15) | 76166 | NM_134257 | 50780 | Mm.286753 | NM_001081650 | ENSMUSG00000059810 | Rgs3 | 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S | regulator of G-protein signaling 3
chr9-98 | chr9 | 120510968 | 120511170 | + | 10.9 | 0.64 | Intergenic | Intergenic | 30435 | NM_025974 | 67115 | Mm.289810 | NM_025974 | ENSMUSG00000025794 | Rpl14 | 3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14 | ribosomal protein L14
chr10-76 | chr10 | 92718119 | 92718321 | + | 10.9 | 0.65 | [NAME] (NM_013508, intron 3 of 4) | [NAME] (NM_013508, intron 3 of 4) | 55684 | NM_013508 | 13713 | Mm.4454 | NM_205536 | ENSMUSG00000008398 | Elk3 | D430049E23Rik|Erp|Etrp|Net|Sap-2 | ELK3, member of ETS oncogene family
chr11-222 | chr11 | 97745637 | 97745839 | + | 10.9 | 0.654 | promoter-TSS (NM_001081435) | promoter-TSS (NM_001081435) | -270 | NM_001081435 | 72973 | Mm.245939 | NM_001081435 | ENSMUSG00000070336 | Fbxo47 | 2900052P03Rik|Gm1562|MGC118329 | F-box protein 47
chr8-491 | chr8 | 91176518 | 91176720 | + | 10.9 | 0.682 | intron (NM_145857, intron 1 of 12) | intron (NM_145857, intron 1 of 12) | 5373 | NM_145857 | 257632 | Mm.222633 | NM_145857 | ENSMUSG00000055994 | Nod2 | ACUG|BLAU|CD|Card15|F830032C23Rik|IBD1|Nlrc2 | nucleotide-binding oligomerization domain containing 2
chr8-613 | chr8 | 129476281 | 129476483 | + | 10.9 | 0.833 | intron (NM_172762, intron 8 of 10) | intron (NM_172762, intron 8 of 10) | -6561 | NM_024214 | 67952 | Mm.489811 | NM_024214 | ENSMUSG00000058779 | Tomm20 | 1810060K07Rik|BB284719|Gm19268|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 | translocase of outer mitochondrial membrane 20 homolog (yeast)
chr4-205 | chr4 | 133050276 | 133050478 | + | 10.9 | 0.636 | [NAME] (NM_001081156, intron 1 of 1) | B1_Mur4|SINE|Alu | 4088 | NM_001081156 | 69539 | Mm.151594 | NM_001081156 | ENSMUSG00000056596 | Trnp1 | 2300002D11Rik|MGC57108|Trnp | TMF1-regulated nuclear protein 1
chr16-42 | chr16 | 17932293 | 17932495 | + | 10.9 | 0.81 | Intergenic | Intergenic | -4082 | NM_153150 | 13358 | Mm.229291 | NM_153150 | ENSMUSG00000003528 | Slc25a1 | 1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|MGC47055|Slc20a3 | solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1
chr9-79 | chr9 | 61142672 | 61142874 | + | 10.9 | 0.737 | Intergenic | Intergenic | -1157 | NR_045334 | 622037 | Mm.126243 | NR_045334 |  | B930092H01Rik | - | RIKEN cDNA B930092H01 gene
chr17-112 | chr17 | 29230174 | 29230376 | + | 10.9 | 0.778 | promoter-TSS (NM_007669) | promoter-TSS (NM_007669) | -442 | NM_007669 | 12575 | Mm.195663 | NM_001111099 | ENSMUSG00000023067 | Cdkn1a | CAP20|CDKI|CIP1|Cdkn1|P21|SDI1|Waf1|mda6|p21Cip1|p21WAF | cyclin-dependent kinase inhibitor 1A (P21)
chr12-382 | chr12 | 85792177 | 85792379 | + | 10.9 | 0.625 | promoter-TSS (NM_173756) | promoter-TSS (NM_173756) | -180 | NM_173756 | 217708 | Mm.311904 | NM_173756 | ENSMUSG00000085793 | Lin52 | 5830457H20Rik | lin-52 homolog (C. elegans)
chr8-535 | chr8 | 111536660 | 111536862 | + | 10.9 | 0.778 | Intergenic | Intergenic | 76001 | NR_037295 | 100526511 |  | NR_037295 |  | Mir3108 | mmu-mir-3108 | microRNA 3108
chr7-108 | chr7 | 103361053 | 103361255 | + | 10.9 | 0.65 | intron (NM_011858, intron 1 of 32) | intron (NM_011858, intron 1 of 32) | 2007 | NM_011858 | 23966 | Mm.391678 | NM_011858 | ENSMUSG00000048078 | Odz4 | Doc4|ELM2|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302 | odd Oz/ten-m homolog 4 (Drosophila)
chr11-198 | chr11 | 60013259 | 60013461 | + | 10.9 | 0.684 | TTS (NM_009021) | TTS (NM_009021) | 20746 | [NAME] | 20787 | Mm.278701 | [NAME] | ENSMUSG00000020538 | Srebf1 | ADD-1|ADD1|D630008H06|SREBP-1|SREBP-1a|SREBP-1c|SREBP1|SREBP1c|bHLHd1 | sterol regulatory element binding transcription factor 1
chr7-99 | chr7 | 53648852 | 53649054 | + | 10.9 | 0.882 | Intergenic | Intergenic | -2885 | NM_008421 | 16502 | [NAME] | NM_177153 | ENSMUSG00000058975 | Kcnc1 | C230009H10Rik|KShIIIB|KV4|Kcr2-1|Kv3.1|NGK2|Shaw | potassium voltage gated channel, Shaw-related subfamily, member 1
chr17-99 | chr17 | 21703769 | 21703971 | + | 10.9 | 0.789 | promoter-TSS (NM_001002008) | promoter-TSS (NM_001002008) | -140 | NM_001002008 | 381066 | Mm.441097 | NM_001002008 | ENSMUSG00000067931 | Zfp948 | - | zinc finger protein 948
chr2-57 | chr2 | 93111813 | 93112015 | + | 10.9 | 0.824 | [NAME] (NM_183180, intron 2 of 9) | [NAME] (NM_183180, intron 2 of 9) | 62730 | NM_183180 | 241556 | Mm.458358 | NM_183180 | ENSMUSG00000027217 | Tspan18 | 2610042G18Rik|6720430O15|BB226562 | tetraspanin 18
chr8-418 | chr8 | 12569296 | 12569498 | + | 10.9 | 0.7 | Intergenic | Intergenic | -3652 | NM_024279 | 78634 | Mm.116871 | NM_024279 | ENSMUSG00000010435 | Spaca7 | 1700094C09Rik|MGC58425 | sperm acrosome associated 7
chr19-64 | chr19 | 48284400 | 48284602 | + | 10.9 | 0.833 | [NAME], intron 1 of 26) | [NAME], intron 1 of 26) | 3986 | NM_025696 | 66673 | Mm.70980 | NM_025696 | ENSMUSG00000063434 | Sorcs3 | 6330404A12Rik|AW045579 | sortilin-related VPS10 domain containing receptor 3
chr17-126 | chr17 | 34167684 | 34167886 | + | 10.9 | 0.579 | promoter-TSS (NM_001205214) | promoter-TSS (NM_001205214) | 850 | NM_001077709 | 14977 | Mm.18556 | NM_001077709 | ENSMUSG00000024327 | Slc39a7 | AA408174|AI117660|AL024048|H-2Ke4|H2-Ke4|Ke-4|Ke4|MGC143814|MGC143815|Ring5|Zip7 | solute carrier family 39 (zinc transporter), member 7
chr15-51 | chr15 | 88299458 | 88299660 | + | 10.9 | 0.938 | Intergenic | Intergenic | -131173 | NM_027306 | 70073 | Mm.45306 | NM_027306 |  | Zdhhc25 | 1700030J15Rik | zinc finger, DHHC domain containing 25
chr6-164 | chr6 | 108482587 | 108482789 | + | 10.9 | 0.75 | intron (NM_010585, intron 60 of 61) | intron (NM_010585, intron 60 of 61) | 90473 | NR_040757 | 75394 | Mm.395061 | NR_040757 |  | 0610040F04Rik | - | RIKEN cDNA 0610040F04 gene
chr2-66 | chr2 | 155770066 | 155770268 | + | 10.9 | 0.684 | [NAME] (NM_008109, intron 1 of 1) | [NAME] (NM_008109, intron 1 of 1) | 933 | NM_008109 | 14563 | Mm.4744 | NM_008109 | ENSMUSG00000038259 | Gdf5 | Cdmp-1|bp|brp | growth differentiation factor 5
chr8-447 | chr8 | 28005915 | 28006117 | + | 10.9 | 0.833 | Intergenic | Intergenic | -71121 | NR_045904 | 72316 |  | NR_045904 |  | 2310008N11Rik | - | RIKEN cDNA 2310008N11 gene
chr11-249 | chr11 | 118917511 | 118917713 | + | 10.9 | 0.941 | Intergenic | Intergenic | -15385 | NM_013926 | 30951 | Mm.99953 | NM_013926 | ENSMUSG00000025578 | Cbx8 | Pc3 | chromobox homolog 8 (Drosophila Pc class)
chr8-468 | chr8 | 86354121 | 86354323 | + | 10.9 | 0.842 | Intergenic | B3|SINE|B2 | -69775 | NM_181039 | 330814 | Mm.260733 | NM_181039 | ENSMUSG00000013033 | Lphn1 | 2900070I05Rik|AI182398|CLIBA|Lec2|MGC109680|mKIAA0821 | latrophilin 1
chr7-86 | chr7 | 31016906 | 31017108 | + | 10.9 | 0.762 | promoter-TSS (NM_025548) | promoter-TSS (NM_025548) | 41 | NM_025548 | 66411 | Mm.27947 | NM_025548 | ENSMUSG00000006095 | Tbcb | 2410007D12Rik|AU041393|CG22|CKAPI|Ckap1 | tubulin folding cofactor B
chr10-66 | chr10 | 77707695 | 77707897 | + | 10.9 | 0.667 | promoter-TSS (NM_001081055) | promoter-TSS (NM_001081055) | -409 | NM_001081055 | 216131 | Mm.27539 | NM_001081055 | ENSMUSG00000000374 | Trappc10 | B230307C21Rik|Gm870|Tmem1 | trafficking protein particle complex 10
chr18-44 | chr18 | 77799366 | 77799568 | + | 10.9 | 0.7 | intron (NM_001164504, intron 1 of 7) | intron (NM_001164504, intron 1 of 7) | 4408 | NM_001164504 | 225743 | Mm.23293 | NM_001164504 | ENSMUSG00000025427 | Rnf165 | 2900024M11Rik|AI427432|G630064H08Rik|Gm96 | ring finger protein 165
chr10-78 | chr10 | 126500159 | 126500361 | + | 10.9 | 0.889 | promoter-TSS (NM_009870) | promoter-TSS (NM_009870) | -399 | NM_009870 | 12567 | Mm.6839 | NM_009870 | ENSMUSG00000006728 | Cdk4 | Crk3 | cyclin-dependent kinase 4
chr5-68 | chr5 | 60587939 | 60588141 | + | 10.9 | 0.938 | Intergenic | Lx4B|LINE|L1 | -210799 | NR_040682 | 71057 | Mm.50817 | NR_040682 |  | 4933402J10Rik | - | RIKEN cDNA 4933402J10 gene
chr8-538 | chr8 | 113026254 | 113026456 | + | 10.9 | 0.778 | intron (NM_172916, intron 30 of 86) | intron (NM_172916, intron 30 of 86) | -116183 | NM_146216 | 234729 | Mm.471242 | NM_146216 | ENSMUSG00000010936 | Vac14 | [NAME] | Vac14 homolog (S. cerevisiae)
chr12-484 | chr12 | 105103710 | 105103912 | + | 10.9 | 0.632 | Intergenic | Intergenic | -1982 | NM_009243 | 20700 | Mm.439692 | NM_001252569 | ENSMUSG00000066366 | Serpina1a | Aat-2|Aat2|Dom1|MGC117839|PI1|Spi1-1|Spi1-3 | serine (or cysteine) peptidase inhibitor, clade A, member 1A
[NAME] | chrX | 126295877 | 126296079 | + | 10.9 | 0.706 | [NAME] (NM_172493, intron 1 of 26) | L1VL2|LINE|L1 | 11700 | NM_172493 | 54004 | Mm.10763 | NM_017398 | [NAME] | Diap2 | Dia3|Diaph2|Drf2|E430022I22Rik | diaphanous homolog 2 (Drosophila)
chr4-210 | chr4 | 146679751 | 146679953 | + | 10.9 | 0.812 | intron (NM_001039209, intron 1 of 2) | intron (NM_001039209, intron 1 of 2) | 129877 | NM_001039209 | 195531 | Mm.489132 | NM_001039209 |  | Gm13152 | MGC60813|MGC76795|OTTMUSG00000010671 | predicted gene 13152
chr7-110 | chr7 | 119166356 | 119166558 | + | 10.9 | 0.833 | promoter-TSS (NM_177249) | promoter-TSS (NM_177249) | -563 | NM_133758 | 74996 | Mm.16974 | NM_133758 | ENSMUSG00000059263 | Usp47 | 4930502N04Rik|A630020C16Rik|MGC118655 | ubiquitin specific peptidase 47
chr11-195 | chr11 | 35597901 | 35598103 | + | 10.9 | 0.765 | [NAME] 6 of 6) | [NAME] 6 of 6) | 2104 | NR_029754 | 723824 |  | NR_029754 |  | Mir103-1 | Mirn103-1 | microRNA 103-1
chr19-43 | chr19 | 6436319 | 6436521 | + | 10.9 | 0.938 | [NAME] (NM_020253, intron 2 of 22) | [NAME] (NM_020253, intron 2 of 22) | 17682 | NM_020253 | 18190 | Mm.414022 | NM_001205234 | ENSMUSG00000033768 | Nrxn2 | 6430591O13Rik|mKIAA0921 | neurexin II
chr17-122 | chr17 | 30950016 | 30950218 | + | 10.9 | 0.762 | exon (NM_013811, exon 82 of 93) | exon (NM_013811, exon 82 of 93) | -88695 | NM_021332 | 14652 | Mm.390969 | NM_021332 | ENSMUSG00000024027 | Glp1r | GLP-1R|GLP1Rc | glucagon-like peptide 1 receptor
chr17-113 | chr17 | 29312348 | 29312550 | + | 10.9 | 0.824 | [NAME] 11 of 20) | [NAME] 11 of 20) | 40448 | NM_001002786 | 442827 | Mm.440341 | NM_001002786 | ENSMUSG00000064147 | Rab44 | 9830134C10Rik | RAB44, member RAS oncogene family
chr8-539 | chr8 | 113263413 | 113263615 | + | 10.9 | 0.737 | 3' UTR (NM_198625, exon 14 of 14) | 3' UTR (NM_198625, exon 14 of 14) | 18130 | NM_198625 | 244654 | Mm.334807 | NM_198625 | [NAME] | Mtss1l | ABBA|MGC79213 | metastasis suppressor 1-like
chr7-111 | chr7 | 129422516 | 129422718 | + | 10.9 | 0.727 | Intergenic | Lx8|LINE|L1 | -10022 | NM_008855 | 18751 | Mm.446371 | NM_008855 | ENSMUSG00000052889 | Prkcb | A130082F03Rik|PKC-Beta|Pkcb|Prkcb1|Prkcb2 | protein kinase C, beta
chr15-41 | chr15 | 34454447 | 34454649 | + | 10.9 | 0.824 | [NAME] intron 14 of 16) | L1_Mus3|LINE|L1 | 29482 | NM_152894 | 67724 | Mm.248779 | NM_026340 | ENSMUSG00000022325 | Pop1 | 4932434G09Rik|MGC36536 | processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)
chr3-53 | chr3 | 105932239 | 105932441 | + | 10.9 | 0.765 | [NAME] (NM_023186, intron 8 of 10) | L1_Mus4|LINE|L1 | 16040 | NM_023186 | 81600 | Mm.46418 | NM_023186 | ENSMUSG00000062778 | Chia | 2200003E03Rik|AMCase|YNL | chitinase, acidic
chr7-89 | chr7 | 50817568 | 50817770 | + | 10.9 | 0.75 | promoter-TSS (NM_001008549) | promoter-TSS (NM_001008549) | -71 | NM_001008549 | 210104 | Mm.333821 | NM_001008549 | ENSMUSG00000056592 | Zfp658 | MGC102645 | zinc finger protein 658
chr14-65 | chr14 | 41789422 | 41789624 | + | 10.9 | 0.8 | Intergenic | Intergenic | -9427 | [NAME] | 52588 | Mm.28876 | [NAME] | ENSMUSG00000037824 | Tspan14 | AA958793|D14Ertd226e|MGC36554|Tm4sf14 | tetraspanin 14
chr8-476 | chr8 | 87607004 | 87607206 | + | 10.9 | 0.722 | promoter-TSS (NM_010764) | promoter-TSS (NM_010764) | -63 | NM_010764 | 17159 | Mm.4219 | NM_010764 | ENSMUSG00000005142 | Man2b1 | AW107687|LAMAN | mannosidase 2, alpha B1
chr8-413 | chr8 | 11746292 | 11746494 | + | 10.9 | 0.737 | intron (NM_001113517, intron 1 of 18) | intron (NM_001113517, intron 1 of 18) | -11937 | NM_017402 | 54126 | Mm.244068 | NM_001113517 | ENSMUSG00000031511 | Arhgef7 | Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR | Rho guanine nucleotide exchange factor (GEF7)
chr5-82 | chr5 | 122386277 | 122386479 | + | 10.9 | 0.842 | [NAME] (NM_007804, intron 2 of 22) | [NAME] (NM_007804, intron 2 of 22) | 87341 | NM_175474 | 231717 | Mm.12654 | NM_175474 | ENSMUSG00000044134 | Fam109a | A230106M15Rik|AU017694|IPIP27A|Ses1 | family with sequence similarity 109, member A
chr13-64 | chr13 | 38251558 | 38251760 | + | 10.9 | 0.941 | [NAME] (NM_023842, intron 1 of 23) | ID|SINE|ID | 8496 | NM_023842 | 109620 | Mm.355327 | NM_023842 | ENSMUSG00000054889 | Dsp | 2300002E22Rik|5730453H04Rik|AA407887|AA407888|AW109828|DP | [NAME]
chr5-76 | chr5 | 114806686 | 114806888 | + | 10.9 | 0.684 | [NAME], intron 21 of 30) | [NAME], intron 21 of 30) | 23727 | NM_026145 | 330171 | Mm.238285 | NM_001159941 | ENSMUSG00000001098 | Kctd10 | AW536343|C87062|MGC11654|mBACURD3 | potassium channel tetramerisation domain containing 10
chr8-463 | chr8 | 81001606 | 81001808 | + | 10.9 | 0.833 | Intergenic | B4A|SINE|B4 | 31120 | NM_001252089 | 19656 | Mm.24718 | NM_001252089 | ENSMUSG00000037070 | Rbmxl1 | Hnrpg|MGC102184|Rbmx|Rbmxrt | RNA binding motif protein, X linked-like-1
chr16-48 | chr16 | 22857556 | 22857758 | + | 10.9 | 0.636 | promoter-TSS (NM_026400) | promoter-TSS (NM_026400) | -15 | NM_001081368 | 70573 | Mm.68291 | NM_001081368 | ENSMUSG00000004462 | Tbccd1 | 5730478M09Rik|AU015083|BB165076 | TBCC domain containing 1
chr5-79 | chr5 | 119055911 | 119056113 | + | 10.9 | 0.778 | [NAME] (NM_172424, intron 2 of 30) | MTE2a|LTR|MaLR | 45284 | NM_172424 | 76199 | Mm.206238 | NM_172424 | ENSMUSG00000018076 | Med13l | 2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025 | mediator complex subunit 13-like
chr13-74 | chr13 | 69657211 | 69657413 | + | 10.9 | 0.824 | intron (NM_001169131, intron 1 of 12) | PB1D10|SINE|Alu | 15430 | NM_198600 | 210106 | Mm.315959 | NM_001169131 | ENSMUSG00000034575 | Papd7 | LAK-1|MGC69673|POLK|Pols|TRF4|TRF4-1 | PAP associated domain containing 7
chr14-61 | chr14 | 7762400 | 7762602 | + | 10.9 | 0.684 | Intergenic | Intergenic | 97462 | NM_001164727 | 100038847 | Mm.483857 | NM_001164727 | ENSMUSG00000072735 | Gm10406 | ENSMUSG00000072735 | predicted gene 10406
chr1-162 | chr1 | 167710557 | 167710759 | + | 10.9 | 0.789 | Intergenic | Intergenic | -8154 | NM_031162 | 12503 | Mm.475205 | NM_001113391 | ENSMUSG00000005763 | Cd247 | 4930549J05Rik|A430104F18Rik|AW552088|Cd3|Cd3-eta|Cd3-zeta|Cd3h|Cd3z|Cd3zeta|T3z|Tcrk|Tcrz | CD247 antigen
chr12-455 | chr12 | 101614310 | 101614512 | + | 10.9 | 0.609 | exon (NM_001033213, exon 14 of 20) | exon (NM_001033213, exon 14 of 20) | 99592 | NR_045741 | 100038713 | Mm.470751 | NR_045741 |  | Gm10432 | ENSMUSG00000072882 | predicted gene 10432
chr9-97 | chr9 | 120480278 | 120480480 | + | 10.9 | 0.842 | promoter-TSS (NM_025974) | promoter-TSS (NM_025974) | -255 | NM_025974 | 67115 | Mm.289810 | NM_025974 | ENSMUSG00000025794 | Rpl14 | 3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14 | ribosomal protein L14
chr7-118 | chr7 | 135414343 | 135414545 | + | 10.9 | 0.737 | TTS (NM_145590) | TTS (NM_145590) | 5233 | NM_133254 | 246787 | Mm.38870 | NM_133254 | ENSMUSG00000030781 | Slc5a2 | Sglt2 | solute carrier family 5 (sodium/glucose cotransporter), member 2
chr3-48 | chr3 | 101253989 | 101254191 | + | 10.9 | 0.875 | intron (NM_207205, intron 7 of 10) | intron (NM_207205, intron 7 of 10) | 73042 | NM_207205 | 78908 | Mm.489667 | NM_207205 | ENSMUSG00000042035 | Igsf3 | 1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466 | immunoglobulin superfamily, member 3
chr4-206 | chr4 | 133313352 | 133313554 | + | 10.9 | 0.667 | Intergenic | Intergenic | -3927 | NM_001080819 | 93760 | Mm.22478 | NM_001080819 | ENSMUSG00000007880 | Arid1a | 1110030E03Rik|BAF250a|Osa1|Smarcf1 | AT rich interactive domain 1A (SWI-like)
chr12-429 | chr12 | 93334096 | 93334298 | + | 10.9 | 0.75 | Intergenic | Lx|LINE|L1 | -246600 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr5-91 | chr5 | 137506536 | 137506738 | + | 10.9 | 0.636 | [NAME], intron 1 of 1) | CpG | 472 | NM_001039385 | 381677 | Mm.389697 | NM_001039385 | ENSMUSG00000037428 | [NAME] | Gm1052 | VGF nerve growth factor inducible
chr5-97 | chr5 | 147049877 | 147050079 | + | 10.9 | 0.938 | [NAME] (NM_153599, intron 1 of 12) | [NAME] (NM_153599, intron 1 of 12) | 6727 | NM_153599 | 264064 | Mm.260576 | NM_181570 | ENSMUSG00000029635 | Cdk8 | MGC37111 | cyclin-dependent kinase 8
chr15-46 | chr15 | 77194296 | 77194498 | + | 10.9 | 0.7 | Intergenic | Intergenic | 35143 | NM_029419 | 75761 | Mm.232636 | NM_001164640 | ENSMUSG00000010601 | Apol7a | 9130022K13Rik|Apol3 | apolipoprotein L 7a
chr17-127 | chr17 | 35068620 | 35068822 | + | 10.9 | 0.938 | intron (NM_010893, intron 1 of 5) | intron (NM_010893, intron 1 of 5) | 523 | NM_010893 | 18010 | Mm.8856 | NM_010893 | ENSMUSG00000007038 | Neu1 | [NAME] | neuraminidase 1
chr12-646 | chr12 | 114421890 | 114422092 | + | 10.9 | 0.833 | Intergenic | Intergenic | -2123 | NM_153776 | 69195 | Mm.313244 | NM_153776 | ENSMUSG00000049036 | Tmem121 | 2410008J05Rik|Hole | [NAME] 121
chr1-153 | chr1 | 137265703 | 137265905 | + | 10.9 | 0.696 | Intergenic | Intergenic | 5836 | NM_175259 | 77552 | Mm.41407 | NM_175259 | ENSMUSG00000041889 | Shisa4 | 9330132O05Rik|Tmem58|mShisa4 | shisa homolog 4 ([NAME] laevis)
chr8-458 | chr8 | 74083045 | 74083247 | + | 10.9 | 0.625 | promoter-TSS (NM_001100462) | promoter-TSS (NM_001100462) | -376 | NM_001100462 | 434325 | Mm.33613 | NM_001100462 | ENSMUSG00000043664 | Tmem221 | - | [NAME] 221
chr11-217 | chr11 | 95276050 | 95276252 | + | 10.9 | 0.652 | intron (NM_025287, intron 2 of 10) | intron (NM_025287, intron 2 of 10) | 754 | NM_025287 | 20747 | Mm.395285 | NM_025287 | ENSMUSG00000057522 | Spop | AI315626|Pcif1|TEF2 | speckle-type POZ protein
chr8-552 | chr8 | 116631892 | 116632094 | + | 10.9 | 0.632 | Intergenic | Intergenic | -25486 | NM_024446 | 67528 | Mm.27889 | NM_024437 | ENSMUSG00000031767 | [NAME] | 1300007B24Rik|2210404C19Rik | nudix (nucleoside diphosphate linked moiety X)-type motif 7
chr4-162 | chr4 | 106228993 | 106229195 | + | 10.9 | 0.895 | Intergenic | B4A|SINE|B4 | -4549 | NM_053272 | 74754 | Mm.133370 | NM_053272 | [NAME] | Dhcr24 | 2310076D10Rik|5830417J06Rik|mKIAA0018 | 24-dehydrocholesterol reductase
chr8-514 | chr8 | 98446208 | 98446410 | + | 10.9 | 0.652 | Intergenic | Intergenic | -34044 | NM_010325 | 14719 | Mm.230169 | NM_010325 | [NAME] | Got2 | AL022787|FABP-pm|Got-2|MGC102129|MGC115763|mAspAT | glutamate oxaloacetate transaminase 2, mitochondrial
chr2-50 | chr2 | 65253092 | 65253294 | + | 10.9 | 0.938 | Intergenic | Intergenic | -51110 | NM_177074 | 320106 | Mm.227703 | NM_177074 | ENSMUSG00000061171 | Slc38a11 | 9330158F14Rik | solute carrier family 38, member 11
chr5-64 | chr5 | 31504708 | 31504910 | + | 10.9 | 0.789 | promoter-TSS (NM_175311) | promoter-TSS (NM_175311) | -133 | NM_175311 | 101023 | Mm.45033 | NM_001177901 | ENSMUSG00000043059 | Zfp513 | AW990386|D430028M17Rik|Znf513 | zinc finger protein 513
chr19-59 | chr19 | 45224726 | 45224928 | + | 10.9 | 0.824 | promoter-TSS (NM_021901) | promoter-TSS (NM_021901) | -378 | NM_021901 | 21908 | Mm.391203 | NM_021901 | ENSMUSG00000025215 | Tlx1 | Hox-11|Hox11 | T cell leukemia, homeobox 1
chr8-473 | chr8 | 87469149 | 87469351 | + | 10.9 | 0.773 | Intergenic | Intergenic | -1640 | NM_144929 | 234542 | Mm.461701 | NM_144929 | ENSMUSG00000048617 | Rtbdn | A330096I21Rik|BC022744|MGC31644|MGC38683|MGC38855|Rtbnd | retbindin
chr3-41 | chr3 | 84553779 | 84553981 | + | 10.9 | 0.778 | Intergenic | Intergenic | -65619 | NM_001177773 | 50754 | Mm.196475 | NM_001177773 | ENSMUSG00000028086 | Fbxw7 | 1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10 | F-box and WD-40 domain protein 7
chr12-422 | chr12 | 88767695 | 88767897 | + | 10.9 | 0.833 | Intergenic | Intergenic | 10911 | NR_037228 | 100526546 |  | NR_037228 |  | Mir3068 | mmu-mir-3068 | microRNA 3068
chr18-26 | chr18 | 6409516 | 6409718 | + | 10.9 | 0.6 | Intergenic | RLTR41|LTR|ERV1 | 81027 | NR_035446 | 100316773 |  | NR_035446 |  | Mir1893 | Mirn1893|mmu-mir-1893 | microRNA 1893
chr8-612 | chr8 | 129469197 | 129469399 | + | 10.9 | 0.7 | intron (NM_024214, intron 1 of 4) | intron (NM_024214, intron 1 of 4) | 523 | NM_024214 | 67952 | Mm.489811 | NM_024214 | ENSMUSG00000058779 | Tomm20 | 1810060K07Rik|BB284719|Gm19268|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 | translocase of outer mitochondrial membrane 20 homolog (yeast)
chr7-78 | chr7 | 20334905 | 20335107 | + | 10.9 | 0.667 | promoter-TSS (NM_001159724) | promoter-TSS (NM_001159724) | -84 | NM_001159724 | 19294 | Mm.4341 | NM_001159724 | ENSMUSG00000062300 | Pvrl2 | AI325026|AI987993|Cd112|MPH|Pvr|Pvs|nectin-2 | poliovirus receptor-related 2
chr12-573 | chr12 | 111339384 | 111339586 | + | 10.9 | 0.56 | Intergenic | L1MEc|LINE|L1 | 56798 | NR_045466 | 67280 | Mm.390495 | NR_045466 |  | 3110009F21Rik | - | RIKEN cDNA 3110009F21 gene
chr18-40 | chr18 | 67422368 | 67422570 | + | 10.9 | 0.938 | Intergenic | Intergenic | -16985 | NM_172630 | 225651 | Mm.235792 | NM_172630 | ENSMUSG00000062526 | Mppe1 | A530095G11 | metallophosphoesterase 1
chr8-405 | chr8 | 8807662 | 8807864 | + | 10.9 | 0.833 | Intergenic | Intergenic | -117226 | NM_176849 | 234023 | Mm.251655 | NM_176849 | ENSMUSG00000040459 | Arglu1 | 9430010O03Rik|C130008N12 | arginine and glutamate rich 1
chr4-169 | chr4 | 108507245 | 108507447 | + | 10.9 | 0.762 | promoter-TSS (NM_025334) | promoter-TSS (NM_025334) | 63 | NM_025334 | 66073 | Mm.159965 | NM_025334 | ENSMUSG00000028567 | Txndc12 | 0610040B21Rik|ERp16|ERp19 | thioredoxin domain containing 12 (endoplasmic reticulum)
chr6-192 | chr6 | 120158837 | 120159039 | + | 10.9 | 0.7 | exon (NM_198884, exon 17 of 20) | exon (NM_198884, exon 17 of 20) | 85639 | NM_198884 | 330406 | Mm.321840 | NM_198884 | ENSMUSG00000041372 | B4galnt3 | AB114826|B4GalNAcT3|C330047A21 | beta-1,4-N-acetyl-galactosaminyl transferase 3
chr12-459 | chr12 | 102106373 | 102106575 | + | 10.9 | 0.636 | [NAME] (NM_145448, intron 12 of 12) | [NAME] (NM_145448, intron 12 of 12) | 31260 | NM_001177674 | 238377 | Mm.32160 | NM_001177673 | ENSMUSG00000047415 | Gpr68 | BB131428|Ogr1 | G protein-coupled receptor 68
chr4-216 | chr4 | 150657307 | 150657509 | + | 10.9 | 0.667 | intron (NM_001081557, intron 6 of 23) | intron (NM_001081557, intron 6 of 23) | -225346 | NM_009498 | 22319 | Mm.273930 | NM_009498 | ENSMUSG00000028955 | [NAME] | D130027G05Rik|VAMP-3|ceb | vesicle-associated membrane protein 3
chr6-161 | chr6 | 95173672 | 95173874 | + | 10.9 | 0.941 | Intergenic | Intergenic | 105873 | NM_001008785 | 243574 | Mm.333275 | NM_001008785 | ENSMUSG00000030031 | Kbtbd8 | AU040152|MGC91215|SSEC-51|SSEC51|Takrp|mKIAA1842 | kelch repeat and BTB (POZ) domain containing 8
chr6-169 | chr6 | 114023507 | 114023709 | + | 10.9 | 0.684 | Intergenic | Intergenic | -31534 | NM_009723 | 11941 | Mm.443564 | NM_001036684 | ENSMUSG00000030302 | Atp2b2 | D6Abb2e|PMCA2|Tmy|dfw|jog|wms|wri | ATPase, Ca++ transporting, plasma membrane 2
chrX-36 | chrX | 138158748 | 138158950 | + | 10.9 | 0.833 | exon (NM_010572, exon 1 of 2) | exon (NM_010572, exon 1 of 2) | 911 | NM_010572 | 16370 | Mm.261591 | NM_010572 | ENSMUSG00000054667 | Irs4 | IRS-4 | insulin receptor substrate 4
chr9-82 | chr9 | 72285993 | 72286195 | + | 10.9 | 0.737 | promoter-TSS (NM_008613) | promoter-TSS (NM_008613) | -242 | NM_008613 | 17427 | Mm.387671 | NM_008613 | ENSMUSG00000032221 | Mns1 | AW546487 | meiosis-specific nuclear structural protein 1
chr8-494 | chr8 | 93306813 | 93307015 | + | 10.9 | 0.737 | Intergenic | Intergenic | -45820 | NM_177224 | 109151 | Mm.100615 | NM_177224 | ENSMUSG00000056608 | Chd9 | 1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308 | chromodomain helicase DNA binding protein 9
chr11-230 | chr11 | 102121900 | 102122102 | + | 10.9 | 0.684 | [NAME] (NM_153544, intron 8 of 9) | [NAME] (NM_153544, intron 8 of 9) | -8136 | NM_148953 | 217217 | Mm.216432 | NM_148953 | ENSMUSG00000034768 | Asb16 | - | ankyrin repeat and SOCS box-containing 16
chr19-54 | chr19 | 38311868 | 38312070 | + | 10.9 | 0.75 | Intergenic | LTR37A|LTR|ERV1 | -13347 | NM_001081075 | 70567 | Mm.30607 | NM_001081075 | ENSMUSG00000054237 | 5730455O13Rik | AI448293|Fra10ac1 | RIKEN cDNA 5730455O13 gene
chr17-135 | chr17 | 46983119 | 46983321 | + | 10.9 | 0.833 | Intergenic | Intergenic | -14858 | NM_001100452 | 210982 | Mm.37642 | NM_001100452 | ENSMUSG00000036568 | BC032203 | KIAA0240|Kiaa0240|mKIAA0240 | cDNA sequence BC032203
chr10-84 | chr10 | 128050035 | 128050237 | + | 10.9 | 0.636 | Intergenic | B1F2|SINE|Alu | 13426 | NM_013765 | 27370 | Mm.261679 | NM_013765 | ENSMUSG00000025362 | Rps26 | - | ribosomal protein S26
chr12-438 | chr12 | 99825263 | 99825465 | + | 10.9 | 0.889 | Intergenic | Intergenic | -9214 | NM_029911 | 72258 | Mm.196158 | NM_029911 | ENSMUSG00000033854 | Kcnk10 | 1700024D23Rik|3010005K24Rik|Trek2 | potassium channel, subfamily K, member 10
chr12-431 | chr12 | 95947212 | 95947414 | + | 10.9 | 0.882 | Intergenic | Lx6|LINE|L1 | -983123 | NM_201518 | 399558 | Mm.341948 | NM_201518 | ENSMUSG00000047414 | Flrt2 | KIAA0405 | fibronectin leucine rich transmembrane protein 2
chr12-537 | chr12 | 108660053 | 108660255 | + | 10.9 | 0.75 | Intergenic | Intergenic | 313544 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr13-53 | chr13 | 12952300 | 12952502 | + | 10.9 | 0.778 | Intergenic | IAPEz-int|LTR|ERVK | -60055 | NM_011118 | 18812 | Mm.457984 | NM_011118 | ENSMUSG00000056457 | Prl2c3 | MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3 | [NAME] family 2, subfamily c, member 3
chr8-489 | chr8 | 90968965 | 90969167 | + | 10.9 | 0.75 | Intergenic | Intergenic | -76177 | NM_027280 | 93960 | Mm.472081 | NM_001163660 | ENSMUSG00000031661 | Nkd1 | 2810434J10Rik|9030215G15Rik|Nkd | naked cuticle 1 homolog (Drosophila)
chr18-31 | chr18 | 35009857 | 35010059 | + | 10.9 | 0.778 | Intergenic | Intergenic | 9715 | NM_144865 | 225362 | Mm.293588 | NM_001204914 | ENSMUSG00000038555 | Reep2 | [NAME] | receptor accessory protein 2
chr4-171 | chr4 | 109093407 | 109093609 | + | 10.9 | 0.778 | intron (NM_001145948, intron 2 of 17) | intron (NM_001145948, intron 2 of 17) | 5256 | NM_001145948 | 230603 | Mm.33091 | NM_001145948 | ENSMUSG00000028555 | Ttc39a | 4922503N01Rik|MGC37599 | tetratricopeptide repeat domain 39A
chr11-225 | chr11 | 100224283 | 100224485 | + | 10.9 | 0.778 | Intergenic | Intergenic | -6929 | NM_010404 | 15114 | Mm.281700 | NM_010404 | ENSMUSG00000006930 | Hap1 | HAP-1|MGC31449 | huntingtin-associated protein 1
chr12-539 | chr12 | 109061531 | 109061733 | + | 10.9 | 0.737 | Intergenic | ORR1B1|LTR|MaLR | -87934 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr17-103 | chr17 | 27032461 | 27032663 | + | 10.9 | 0.75 | Intergenic | Intergenic | -21474 | NM_053173 | 16580 | Mm.258953 | NM_016761 | ENSMUSG00000024301 | Kifc5b | [NAME] | [NAME] member C5B
chr18-30 | chr18 | 23893009 | 23893211 | + | 10.9 | 0.667 | Intergenic | RMER1C|Other|Other | -17724 | NM_001162942 | 212307 | Mm.132237 | [NAME] | ENSMUSG00000024277 | Mapre2 | AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1 | microtubule-associated protein, RP/[NAME] family, member 2
chr2-41 | chr2 | 24465219 | 24465421 | + | 10.9 | 0.789 | intron (NM_001042528, intron 44 of 46) | intron (NM_001042528, intron 44 of 46) | -134234 | NM_011040 | 18510 | Mm.2533 | NM_011040 | ENSMUSG00000026976 | Pax8 | Pax-8 | paired box gene 8
chr1-124 | chr1 | 43811636 | 43811838 | + | 10.9 | 0.762 | intron (NM_026430, intron 13 of 14) | intron (NM_026430, intron 13 of 14) | 24290 | NM_024283 | 78896 | Mm.50109 | NM_024283 | ENSMUSG00000026051 | 1500015O10Rik | Ecrg4 | RIKEN cDNA 1500015O10 gene
chr14-100 | chr14 | 100243746 | 100243948 | + | 10.9 | 0.842 | Intergenic | Lx4A|LINE|L1 | 305168 | NM_010636 | 16597 | Mm.458816 | NM_010636 | ENSMUSG00000072294 | Klf12 | 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik | Kruppel-like factor 12
chr14-88 | chr14 | 99486176 | 99486378 | + | 10.9 | 0.938 | intron (NM_028315, intron 11 of 20) | B4A|SINE|B4 | -12375 | NM_029454 | 52023 | Mm.22835 | NM_029320 | ENSMUSG00000022064 | Pibf1 | 1700017E21Rik|4930513H15Rik|4933438D16Rik|4933439E17Rik|D14Ertd581e | progesterone immunomodulatory binding factor 1
chr8-588 | chr8 | 124764576 | 124764778 | + | 10.9 | 0.696 | Intergenic | MLT1K|LTR|MaLR | -41364 | NM_009569 | 22761 | Mm.390068 | NM_009569 | ENSMUSG00000049577 | Zfpm1 | FOG|Fog1 | zinc finger protein, multitype 1
chr7-103 | chr7 | 82930838 | 82931040 | + | 10.9 | 0.706 | Intergenic | RLTR13D3|LTR|ERVK | -62285 | NM_001122780 | 207952 | Mm.206223 | NM_001122780 | ENSMUSG00000055652 | Klhl25 | 2810402K13Rik|BC027373|Enc-1|MGC36331 | kelch-like 25 (Drosophila)
chr7-82 | chr7 | 27952568 | 27952770 | + | 10.9 | 0.778 | promoter-TSS (NM_053208) | promoter-TSS (NM_053208) | -848 | NM_053208 | 112406 | Mm.29978 | NM_053208 | ENSMUSG00000058709 | Egln2 | 0610011A13Rik|C85656|Hif-p4h-1|Ier4|MGC101954|Phd1|SM-20 | EGL nine homolog 2 (C. elegans)
chr6-246 | chr6 | 143363145 | 143363347 | + | 10.9 | 0.842 | Intergenic | Intergenic | 168838 | NR_027803 | 52285 | [NAME] | NM_001033129 |  | D6Ertd474e | 1700001I24Rik|AU023129 | DNA segment, Chr 6, ERATO Doi 474, expressed
chr6-253 | chr6 | 147597457 | 147597659 | + | 10.9 | 0.789 | Intergenic | Intergenic | -41205 | NR_033636 | 100039727 | [NAME] | NR_033636 |  | 1700049E15Rik | [NAME] | RIKEN cDNA 1700049E15 gene
chr8-532 | chr8 | 109033035 | 109033237 | + | 10.9 | 0.722 | Intergenic | ID4_|SINE|ID | -1655 | NM_007665 | 12560 | Mm.4658 | NM_001037809 | [NAME] | Cdh3 | AI385538|Cadp|P-cadherin|Pcad | cadherin 3
chr8-427 | chr8 | 18756050 | 18756252 | + | 10.9 | 0.722 | intron (NM_173189, intron 12 of 13) | B4A|SINE|B4 | -14600 | NM_007426 | 11601 | Mm.439874 | NM_007426 | ENSMUSG00000031465 | Angpt2 | Agpt2|Ang-2|Ang2 | angiopoietin 2
chr14-70 | chr14 | 56222703 | 56222905 | + | 10.9 | 0.52 | promoter-TSS (NM_001159418) | promoter-TSS (NM_001159418) | -18 | NM_008394 | 16391 | Mm.2032 | NM_001159417 | ENSMUSG00000002325 | Irf9 | Irf-9|Isgf3g|p48 | interferon regulatory factor 9
chr2-64 | chr2 | 154438777 | 154438979 | + | 10.9 | 0.7 | promoter-TSS (NM_199304) | promoter-TSS (NM_199304) | -226 | NM_199304 | 228807 | Mm.103555 | NM_199304 | ENSMUSG00000059842 | Zfp341 | MGC73471|Znf341 | zinc finger protein 341
chr6-212 | chr6 | 125195275 | 125195477 | + | 10.9 | 0.722 | Intergenic | RMER19B|LTR|ERVK | -8331 | NM_001042564 | 21940 | Mm.367714 | NM_001033126 | ENSMUSG00000030336 | Cd27 | S152|Tnfrsf7|Tp55 | CD27 antigen
chr10-79 | chr10 | 126513264 | 126513466 | + | 10.9 | 0.7 | Intergenic | Intergenic | -2598 | NM_001033263 | 216439 | Mm.336761 | NM_001033263 | ENSMUSG00000025422 | Agap2 | Centg1|mKIAA0167 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
chr11-220 | chr11 | 97350943 | 97351145 | + | 10.9 | 0.632 | [NAME] (NM_021493, intron 15 of 18) | [NAME] (NM_021493, intron 15 of 18) | 39570 | NM_021493 | 58996 | Mm.394118 | NM_021493 | ENSMUSG00000049807 | Arhgap23 | A330041B18Rik | Rho GTPase activating protein 23
chr6-219 | chr6 | 127775524 | 127775726 | + | 10.9 | 0.778 | Intergenic | RMER4B|LTR|ERVK | -56448 | NM_201371 | 381813 | Mm.39750 | NM_201371 | ENSMUSG00000030350 | Prmt8 | Hrmt1l3|Hrmt1l4 | protein arginine N-methyltransferase 8
chr15-55 | chr15 | 101098226 | 101098428 | + | 10.9 | 0.7 | [NAME] (NM_010444, intron 1 of 6) | [NAME] (NM_010444, intron 1 of 6) | 1050 | NM_010444 | 15370 | Mm.119 | NM_010444 | ENSMUSG00000023034 | Nr4a1 | [NAME] | nuclear receptor subfamily 4, group A, member 1
chr7-126 | chr7 | 151922080 | 151922282 | + | 10.9 | 0.65 | [NAME] (NM_178642, intron 1 of 25) | [NAME] (NM_178642, intron 1 of 25) | 2316 | NM_178642 | 101772 | Mm.26700 | NM_001242349 | ENSMUSG00000031075 | Ano1 | Tmem16a | anoctamin 1, calcium activated chloride channel
chr4-157 | chr4 | 90452054 | 90452256 | + | 10.9 | 0.688 | Intergenic | Lx2B|LINE|L1 | -424150 | NR_033610 | 619842 | Mm.484218 | NR_033610 |  | Gm12633 | OTTMUSG00000007790 | zinc finger protein 352 pseudogene
chr8-519 | chr8 | 107873687 | 107873889 | + | 10.9 | 0.882 | intron (NM_001081332, intron 1 of 15) | intron (NM_001081332, intron 1 of 15) | 1630 | [NAME] | 277973 | Mm.334766 | [NAME] | ENSMUSG00000014786 | Slc9a5 | Gm696 | solute carrier family 9 (sodium/hydrogen exchanger), member 5
chr4-203 | chr4 | 128953915 | 128954117 | + | 10.9 | 0.684 | Intergenic | Intergenic | -10849 | NM_023485 | 68828 | Mm.132243 | NM_023485 | ENSMUSG00000001333 | Sync | 1110057H03Rik|MGC124230|SNIP4 | syncoilin
chr8-508 | chr8 | 97637443 | 97637645 | + | 10.9 | 0.632 | promoter-TSS (NM_001145832) | promoter-TSS (NM_001145832) | -302 | NM_001145832 | 16582 | Mm.378951 | NM_001145831 | ENSMUSG00000031788 | [NAME] | AI325457|BB123200 | [NAME] member [NAME]
chr4-173 | chr4 | 114490327 | 114490529 | + | 10.9 | 0.762 | Intergenic | Intergenic | -3897 | NR_033617 | 433746 | Mm.388908 | NR_033617 |  | Gm12830 | OTTMUSG00000008584 | predicted gene 12830
chr5-69 | chr5 | 74488773 | 74488975 | + | 10.9 | 0.833 | promoter-TSS (NR_015531) | promoter-TSS (NR_015531) | -234 | NR_015531 | 70036 | Mm.46547 | NR_015531 |  | 2700023E23Rik | - | RIKEN cDNA 2700023E23 gene
chr8-492 | chr8 | 91546131 | 91546333 | + | 10.9 | 0.714 | Intergenic | Intergenic | 21829 | NM_021390 | 58198 | Mm.214361 | NM_021390 | ENSMUSG00000031665 | Sall1 | Msal-3 | sal-like 1 (Drosophila)
chr8-536 | chr8 | 112071000 | 112071202 | + | 10.9 | 0.778 | TTS (NM_178380) | TTS (NM_178380) | 18400 | NM_178380 | 64340 | Mm.23705 | NM_178380 | ENSMUSG00000037993 | Dhx38 | 5730550P09Rik|AI325984|AW540902|Ddx38|Prp16|mKIAA0224 | DEAH (Asp-Glu-Ala-His) box polypeptide 38
chr3-35 | chr3 | 30500156 | 30500358 | + | 10.9 | 0.895 | promoter-TSS (NM_030557) | promoter-TSS (NM_030557) | -752 | NM_030557 | 80732 | Mm.200378 | NM_030557 | ENSMUSG00000037730 | [NAME] | 2810011C24Rik|AA415053|AI661031|AW049392|Mynr|SBBIZ1 | myoneurin
chr19-38 | chr19 | 4190619 | 4190821 | + | 10.9 | 0.875 | exon (NM_178650, exon 2 of 10) | exon (NM_178650, exon 2 of 10) | 327 | NM_178650 | 108995 | Mm.288312 | NM_178650 | ENSMUSG00000040247 | Tbc1d10c | 1810062O14Rik|AI428527 | TBC1 domain family, member 10c
chr8-465 | chr8 | 83387265 | 83387467 | + | 10.9 | 0.882 | [NAME] (NM_021356, intron 1 of 9) | [NAME] (NM_021356, intron 1 of 9) | 17012 | NM_021356 | 14388 | Mm.277409 | NM_021356 | ENSMUSG00000031714 | Gab1 | AA408973|AW107238 | growth factor receptor bound protein 2-associated protein 1
chr15-50 | chr15 | 84531078 | 84531280 | + | 10.9 | 0.636 | [NAME] (NM_146061, intron 6 of 7) | [NAME] (NM_146061, intron 6 of 7) | -19303 | NM_001164628 | 73167 | Mm.128411 | NM_001164627 | ENSMUSG00000078954 | Arhgap8 | 3110043J09Rik | Rho GTPase activating protein 8
chr8-412 | chr8 | 10881304 | 10881506 | + | 10.9 | 0.65 | [NAME] (NR_040705, intron 1 of 5) | [NAME] (NR_040705, intron 1 of 5) | 1049 | NR_040705 | 320014 | Mm.403203 | NR_040705 |  | B930025P03Rik | - | RIKEN cDNA B930025P03 gene
chr10-77 | chr10 | 94086424 | 94086626 | + | 10.9 | 0.727 | Intergenic | Intergenic | 47517 | NM_177026 | 319880 | Mm.23047 | NM_001168684 | ENSMUSG00000020023 | Tmcc3 | AW488095|C630016B22Rik|C88213|MGC30586|Tmcc1 | [NAME] and coiled coil domains 3
chr1-167 | chr1 | 193168017 | 193168219 | + | 10.9 | 0.65 | intron (NM_025864, intron 4 of 7) | intron (NM_025864, intron 4 of 7) | 18274 | NM_025864 | 66950 | Mm.236300 | NM_025864 | ENSMUSG00000026627 | Tmem206 | 2310028N02Rik|AI118576 | [NAME] 206
chr6-250 | chr6 | 145810884 | 145811086 | + | 10.9 | 0.75 | TTS (NM_024469) | TTS (NM_024469) | 2875 | NM_024469 | 79362 | Mm.154529 | NM_024469 | ENSMUSG00000030256 | Bhlhe41 | Bhlhb2l|Bhlhb3|DEC2|Sharp1 | basic helix-loop-helix family, member e41
chr19-61 | chr19 | 45371092 | 45371294 | + | 10.9 | 0.789 | Intergenic | Intergenic | -61467 | NM_010691 | 16814 | Mm.116815 | NM_010691 | ENSMUSG00000025216 | Lbx1 | Lbx1h | [NAME] homolog 1 (Drosophila)
chr11-221 | chr11 | 97564750 | 97564952 | + | 10.9 | 0.6 | intron (NM_011971, intron 1 of 5) | intron (NM_011971, intron 1 of 5) | 103 | NM_011971 | 26446 | Mm.21874 | NM_011971 | ENSMUSG00000069744 | Psmb3 | AL033320|C10-II|MGC106850 | proteasome (prosome, macropain) subunit, beta type 3
chr8-417 | chr8 | 12403800 | 12404002 | + | 10.9 | 0.833 | [NAME] (NR_027975, intron 1 of 7) | [NAME] (NR_027975, intron 1 of 7) | 8382 | NM_009233 | 20664 | Mm.39088 | NM_009233 |  | Sox1 | BB176347|Sox-1 | SRY-box containing gene 1
chr6-213 | chr6 | 125212944 | 125213146 | + | 10.9 | 0.65 | Intergenic | PB1D7|SINE|Alu | -2498 | NR_015527 | 73870 | Mm.440681 | NR_015527 |  | 4930417O13Rik | - | RIKEN cDNA 4930417O13 gene
chr13-61 | chr13 | 33172399 | 33172601 | + | 10.9 | 0.706 | Intergenic | Intergenic | -3472 | NM_173052 | 282663 | Mm.314490 | NM_173052 | ENSMUSG00000051029 | Serpinb1b | 6330533H24Rik|EIB|Serpin1b1|ovalbumin | serine (or cysteine) peptidase inhibitor, clade B, member 1b
chr6-196 | chr6 | 121034555 | 121034757 | + | 10.9 | 0.7 | Intergenic | RSINE1|SINE|B4 | -3029 | NM_153396 | 194401 | [NAME] | NM_153396 | ENSMUSG00000003178 | Mical3 | C130040D16Rik|KIAA0819|Mical-3|mKIAA1364 | microtubule associated monoxygenase, calponin and LIM domain containing 3
[NAME] | chr11 | 117831446 | 117831648 | + | 10.9 | 0.619 | promoter-TSS (NM_007707) | promoter-TSS (NM_007707) | -867 | NM_007707 | 12702 | Mm.3468 | NM_007707 | ENSMUSG00000053113 | Socs3 | Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3 | suppressor of cytokine signaling 3
chr12-383 | chr12 | 86231375 | 86231577 | + | 10.9 | 0.706 | Intergenic | Intergenic | -14031 | NM_013589 | 16997 | Mm.479389 | NM_013589 | ENSMUSG00000002020 | Ltbp2 | AW208642|MGC144212 | latent transforming growth factor beta binding protein 2
chr6-156 | chr6 | 30630455 | 30630657 | + | 10.9 | 0.812 | [NAME] (NM_031998, intron 1 of 10) | [NAME] (NM_031998, intron 1 of 10) | 13126 | NM_031998 | 83922 | Mm.65389 | NM_031998 | ENSMUSG00000029790 | Tsga14 | 1700017E11Rik|2810431D15Rik|AI449046|AI503610 | testis specific gene A14
chr11-207 | chr11 | 78710565 | 78710767 | + | 10.9 | 0.737 | Intergenic | RMER1B|Other|Other | -23695 | NM_010927 | 18126 | Mm.2893 | NM_010927 | ENSMUSG00000020826 | Nos2 | NOS-II|Nos-2|Nos2a|i-NOS|iNOS | nitric oxide synthase 2, inducible
chr12-481 | chr12 | 104347699 | 104347901 | + | 10.9 | 0.833 | intron (NM_001081017, intron 29 of 48) | intron (NM_001081017, intron 29 of 48) | 132556 | NM_133364 | 170952 | Mm.217019 | NM_178023 | ENSMUSG00000041669 | Prima1 | [NAME] | proline rich membrane anchor 1
chr8-455 | chr8 | 73063085 | 73063287 | + | 10.9 | 0.667 | promoter-TSS (NM_007924) | promoter-TSS (NM_007924) | -388 | NM_007924 | 13716 | Mm.271973 | NM_007924 | ENSMUSG00000070002 | Ell | Ell1|Men | elongation factor [NAME] polymerase II
chr12-505 | chr12 | 106357559 | 106357761 | + | 10.9 | 0.706 | Intergenic | RMER17A|LTR|ERVK | -27583 | NM_013775 | 27381 | Mm.103653 | NM_013775 | ENSMUSG00000060863 | Tcl1b2 | - | T cell leukemia/lymphoma 1B, 2
chr4-156 | chr4 | 88774013 | 88774215 | + | 10.9 | 0.706 | Intergenic | Intergenic | -9160 | NM_024433 | 66902 | Mm.28500 | NM_024433 | ENSMUSG00000062937 | Mtap | 1300019I21Rik|MSAP | methylthioadenosine phosphorylase
chr8-559 | chr8 | 120897505 | 120897707 | + | 10.9 | 0.722 | [NAME] (NM_019707, intron 1 of 13) | B4|SINE|B4 | 89951 | NM_019707 | 12554 | Mm.334841 | NM_019707 | ENSMUSG00000031841 | Cdh13 | 4932416G01Rik|Cdht|T-cadherin|Tcad | cadherin 13
chr13-70 | chr13 | 55310731 | 55310933 | + | 10.9 | 0.609 | promoter-TSS (NM_008739) | promoter-TSS (NM_008739) | -311 | NM_008739 | 18193 | Mm.168965 | NM_008739 | ENSMUSG00000021488 | Nsd1 | AI528500|KMT3B | nuclear receptor-binding SET-domain protein 1
chr6-247 | chr6 | 143561075 | 143561277 | + | 10.9 | 0.714 | [NAME] (NR_045732, intron 4 of 4) | B1F|SINE|Alu | 38632 | NR_045732 | 73425 | Mm.417844 | NR_045732 |  | 1700060C16Rik | - | RIKEN cDNA 1700060C16 gene
chr5-84 | chr5 | 123615785 | 123615987 | + | 10.9 | 0.706 | Intergenic | Intergenic | 16809 | NM_008277 | 15445 | Mm.439709 | NM_008277 | ENSMUSG00000029445 | Hpd | Fla|Flp|Hppd|Laf | 4-hydroxyphenylpyruvic acid dioxygenase
chr11-212 | chr11 | 86358250 | 86358452 | + | 10.9 | 0.824 | promoter-TSS (NM_028259) | promoter-TSS (NM_028259) | -42 | NM_001114334 | 72508 | Mm.479484 | NM_001114334 | ENSMUSG00000020516 | Rps6kb1 | 2610318I15Rik|4732464A07Rik|70kDa|AA959758|AI256796|AI314060|S6K1|p70/85s6k|p70s6k | ribosomal protein S6 kinase, polypeptide 1
chr3-44 | chr3 | 93606589 | 93606791 | + | 10.9 | 0.75 | Intergenic | Intergenic | 6370 | NM_207272 | 399675 | Mm.377924 | NM_207272 | ENSMUSG00000060256 | Tdpoz4 | - | TD and POZ domain containing 4
chr8-518 | chr8 | 107793231 | 107793433 | + | 10.9 | 0.708 | promoter-TSS (NM_011939) | promoter-TSS (NM_011939) | -369 | NM_011939 | 26386 | Mm.89204 | NM_001256042 | ENSMUSG00000033249 | Hsf4 | HSF 4|HSTF 4|HSTF4|ldis1|mHSF4 | heat shock transcription factor 4
chr9-80 | chr9 | 63970585 | 63970787 | + | 10.9 | 0.714 | intron (NM_145835, intron 7 of 13) | L2|LINE|L2 | 5732 | NM_145835 | 235435 | Mm.436581 | NM_145835 | ENSMUSG00000032401 | Lctl | E130104I05Rik|KLPH | lactase-like
chr12-549 | chr12 | 109406564 | 109406766 | + | 10.9 | 0.889 | intron (NM_028262, intron 1 of 12) | intron (NM_028262, intron 1 of 12) | 10829 | NM_028262 | 52690 | Mm.159185 | NM_028262 | ENSMUSG00000056770 | Setd3 | 2610102I01Rik|2610305M23Rik|6030490B17Rik|D12Ertd771e | SET domain containing 3
chr6-191 | chr6 | 120122360 | 120122562 | + | 10.9 | 0.778 | [NAME] 3) | MLT1F|LTR|MaLR | 79063 | NM_016718 | 29862 | [NAME] | NM_016718 | ENSMUSG00000041377 | Ninj2 | MGC143502 | ninjurin 2
chr10-70 | chr10 | 80692377 | 80692579 | + | 10.9 | 0.619 | intron (NM_178662, intron 1 of 12) | intron (NM_178662, intron 1 of 12) | 1046 | NM_178662 | 16467 | [NAME] | NM_178662 | ENSMUSG00000034958 | [NAME] | 3322401A10Rik|BB077577|BNIP-H|CLAC|hes|ji | [NAME], cerebellar, Cayman type homolog (human)
chr1-131 | chr1 | 75186936 | 75187138 | + | 10.9 | 0.789 | intron (NM_001003917, intron 2 of 15) | intron (NM_001003917, intron 2 of 15) | 1460 | NM_001003917 | 245860 | Mm.479951 | NM_001003917 | ENSMUSG00000033124 | Atg9a | AU019532|Apg9l1|Atg9|Atg9l1|MGC105176 | autophagy related 9A
chr4-208 | chr4 | 134566817 | 134567019 | + | 10.9 | 0.778 | Intergenic | Intergenic | 80023 | NM_026780 | 68592 | Mm.29989 | NM_026780 | ENSMUSG00000028821 | Syf2 | 1110018L13Rik|Cbpin|D4Bwg1551e|Gcipip|mp29|p29 | [NAME] homolog, RNA splicing factor (S. cerevisiae)
chr7-87 | chr7 | 49948048 | 49948250 | + | 10.9 | 0.8 | promoter-TSS (NM_001008427) | promoter-TSS (NM_001008427) | -61 | NM_001008427 | 434179 | Mm.284947 | NM_001008427 | ENSMUSG00000069727 | Gm5595 | EG434179|mszf88 | predicted gene 5595
chr8-461 | chr8 | 80494437 | 80494639 | + | 10.9 | 0.619 | Intergenic | Intergenic | -242703 | NM_183096 | 73301 | Mm.61243 | NM_183096 | ENSMUSG00000037101 | Ttc29 | 1700031F13Rik | tetratricopeptide repeat domain 29
chr1-146 | chr1 | 91521029 | 91521231 | + | 10.9 | 0.833 | [NAME] (NM_001037136, intron 3 of 16) | [NAME] (NM_001037136, intron 3 of 16) | 59337 | NR_015540 | 74403 | Mm.444291 | NR_015540 |  | 4933400F21Rik | 1700091C04Rik|4930565K10Rik | RIKEN cDNA 4933400F21 gene
chr4-184 | chr4 | 117839508 | 117839710 | + | 10.9 | 0.727 | [NAME] (NM_172382, intron 5 of 18) | [NAME] (NM_172382, intron 5 of 18) | 13039 | NM_001161823 | 230674 | [NAME] | NM_001161823 | ENSMUSG00000033326 | Kdm4a | D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|MGC28562|mKIAA0677 | lysine (K)-specific demethylase 4A
chr8-470 | chr8 | 86526803 | 86527005 | + | 10.9 | 0.789 | [NAME] (NM_183097, intron 2 of 5) | [NAME] (NM_183097, intron 2 of 5) | 1299 | NM_183097 | 73453 | Mm.486026 | NM_183097 | ENSMUSG00000046408 | 1700067K01Rik | - | RIKEN cDNA 1700067K01 gene
chr8-608 | chr8 | 127458961 | 127459163 | + | 10.9 | 0.882 | [NAME] (NM_053207, intron 1 of 4) | B4A|SINE|B4 | 14092 | NM_053207 | 112405 | Mm.140619 | NM_053207 | ENSMUSG00000031987 | [NAME] | AI503754|C1orf12|HIF-PH2|HPH-2|Hif-p4h-2|ORF13|Phd2|SM-20 | EGL nine homolog 1 (C. elegans)
chr10-75 | chr10 | 85602184 | 85602386 | + | 10.9 | 0.7 | [NAME] (NM_013722, intron 6 of 13) | [NAME] (NM_013722, intron 6 of 13) | 43686 | NR_038024 | 78170 | Mm.444790 | NR_038024 |  | 4930486F22Rik | - | RIKEN cDNA 4930486F22 gene
chr12-379 | chr12 | 33504744 | 33504946 | + | 10.9 | 0.75 | promoter-TSS (NM_021524) | promoter-TSS (NM_021524) | -355 | NM_021524 | 59027 | Mm.489597 | NM_021524 | ENSMUSG00000020572 | [NAME] | 1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin | nicotinamide phosphoribosyltransferase
chr16-43 | chr16 | 18168739 | 18168941 | + | 10.9 | 0.652 | Intergenic | Intergenic | 41041 | NM_022982 | 65079 | Mm.40149 | NM_022982 | ENSMUSG00000043811 | Rtn4r | NOGOR|NgR|NgR1 | reticulon 4 receptor
chr4-221 | chr4 | 155264064 | 155264266 | + | 10.9 | 0.667 | TTS (NM_028020) | TTS (NM_028020) | 1706 | NM_001033490 | 433813 | Mm.259270 | NM_001033490 | ENSMUSG00000051557 | Pusl1 | 2810021I11Rik|AI853843|D18346 | pseudouridylate synthase-like 1
chr8-609 | chr8 | 127651779 | 127651981 | + | 10.9 | 0.75 | [NAME] (NM_174854, intron 4 of 12) | [NAME] (NM_174854, intron 4 of 12) | 73785 | NM_174854 | 244667 | [NAME] | NM_170596 | ENSMUSG00000043051 | Disc1 | - | disrupted in schizophrenia 1
chr9-92 | chr9 | 111399735 | 111399937 | + | 10.9 | 0.789 | Intergenic | Intergenic | 58251 | NM_172928 | 245038 | Mm.26361 | NM_172928 | ENSMUSG00000032500 | Dclk3 | BC056929|C730036H08|Dcamkl3 | doublecortin-like kinase 3
chr8-481 | chr8 | 89425811 | 89426013 | + | 10.9 | 0.545 | Intergenic | Intergenic | -16755 | NM_030563 | 80750 | Mm.428374 | NM_030563 | ENSMUSG00000031652 | N4bp1 | AI481586|C81621|MGC7607 | NEDD4 binding protein 1
chr14-62 | chr14 | 21000405 | 21000607 | + | 10.9 | 0.765 | exon (NM_021542, exon 1 of 5) | exon (NM_021542, exon 1 of 5) | 498 | NM_021542 | 16529 | Mm.68998 | NM_021542 | ENSMUSG00000023243 | [NAME] | TASK-2 | potassium channel, subfamily K, member 5
chr9-99 | chr9 | 120824296 | 120824498 | + | 10.9 | 0.591 | promoter-TSS (NR_040742) | promoter-TSS (NR_040742) | -29 | NR_040742 | 76402 | Mm.436588 | NR_040742 |  | 1700020M21Rik | - | RIKEN cDNA 1700020M21 gene
chr14-77 | chr14 | 79020488 | 79020690 | + | 10.9 | 0.882 | [NAME] intron 7 of 28) | B1_Mus2|SINE|Alu | 8508 | NR_045588 | 380921 | Mm.411737 | NM_001081336 | ENSMUSG00000034731 | Dgkh | 5930402B05Rik|D130015C16|MGC156865 | [NAME], eta
chr13-68 | chr13 | 51893443 | 51893645 | + | 10.9 | 0.789 | Intergenic | Intergenic | -4531 | NM_013660 | 20354 | Mm.33903 | NM_013660 | ENSMUSG00000021451 | Sema4d | [NAME] | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D
chr7-109 | chr7 | 109359099 | 109359301 | + | 10.9 | 0.824 | promoter-TSS (NM_022979) | promoter-TSS (NM_022979) | -566 | NM_022979 | 269966 | Mm.486276 | NM_022979 | ENSMUSG00000063550 | Nup98 | 4732457F17|AI849286|MGC118567|Nup96 | nucleoporin 98
chr15-43 | chr15 | 75714781 | 75714983 | + | 10.9 | 0.778 | Intergenic | Intergenic | 10029 | NM_172607 | 223646 | Mm.288368 | NM_172607 | ENSMUSG00000022574 | Naprt1 | 9130210N20Rik | nicotinate phosphoribosyltransferase domain containing 1
chr19-49 | chr19 | 24347129 | 24347331 | + | 10.9 | 0.789 | [NAME] (NM_008044, intron 2 of 4) | PB1D7|SINE|Alu | 7846 | NM_008044 | 14297 | Mm.7319 | NM_008044 | ENSMUSG00000059363 | Fxn | [NAME] | frataxin
chr8-436 | chr8 | 24706785 | 24706987 | + | 10.9 | 0.842 | Intergenic | Intergenic | -73247 | NM_177086 | 320158 | Mm.121274 | NM_177086 | ENSMUSG00000037492 | Zmat4 | 9630048M01Rik|MGC90808 | zinc finger, matrin type 4
chr6-237 | chr6 | 137452061 | 137452263 | + | 10.9 | 0.81 | [NAME] (NM_007945, intron 16 of 21) | [NAME] (NM_007945, intron 16 of 21) | 92920 | NM_001164403 | 19277 | Mm.446785 | [NAME] | ENSMUSG00000030223 | Ptpro | D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O | protein tyrosine phosphatase, receptor type, O
chr8-442 | chr8 | 26575832 | 26576034 | + | 10.9 | 0.682 | Intergenic | Intergenic | -53311 | NM_001079909 | 14182 | Mm.265716 | NM_001079908 | ENSMUSG00000031565 | Fgfr1 | AW208770|Eask|FLG|Fgfr-1|Flt-2|Hspy | fibroblast growth factor receptor 1
chr16-54 | chr16 | 59471966 | 59472168 | + | 10.9 | 0.875 | intron (NM_025910, intron 1 of 9) | intron (NM_025910, intron 1 of 9) | 466 | NM_025910 | 67014 | Mm.289150 | NM_025910 | ENSMUSG00000022724 | Mina | 1810047J07Rik|2410057H13Rik|3830408E23Rik|AI449204 | myc induced nuclear antigen
chr6-178 | chr6 | 115648133 | 115648335 | + | 10.9 | 0.682 | Intergenic | MLT1H1|LTR|MaLR | -21581 | NM_029780 | 110157 | Mm.184163 | NM_029780 | ENSMUSG00000000441 | Raf1 | 6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|MGC102375|Raf-1|c-Raf|v-Raf | v-raf-leukemia viral oncogene 1
chr3-59 | chr3 | 138533365 | 138533567 | + | 10.9 | 0.75 | intron (NM_019571, intron 2 of 7) | intron (NM_019571, intron 2 of 7) | 128307 | NM_019571 | 56224 | Mm.31927 | NM_019571 | ENSMUSG00000028152 | Tspan5 | 2810455A09Rik|4930505M03Rik|AU024142|NET-4|Tm4sf9 | tetraspanin 5
chr15-48 | chr15 | 78859457 | 78859659 | + | 10.9 | 0.889 | exon (NM_008197, exon 1 of 1) | exon (NM_008197, exon 1 of 1) | 916 | NM_008197 | 14958 | Mm.24350 | NM_008197 |  | H1f0 | D130017D06Rik|H1(0)|H1fv|MGC117919|MGC19309|MGC98218 | H1 histone family, member 0
chr19-40 | chr19 | 4425799 | 4426001 | + | 10.9 | 0.7 | 3' UTR (NM_007485, exon 5 of 5) | 3' UTR (NM_007485, exon 5 of 5) | -13423 | NR_045990 | 319314 | Mm.393810 | NR_045989 |  | A930001C03Rik | - | RIKEN cDNA A930001C03 gene
chr8-434 | chr8 | 23618849 | 23619051 | + | 10.9 | 0.667 | intron (NM_011394, intron 1 of 10) | intron (NM_011394, intron 1 of 10) | -31599 | NM_001146117 | 102032 | Mm.378231 | NM_001012667 | ENSMUSG00000031534 | AI316807 | BG694986|EST-c39 | expressed sequence AI316807
chr17-114 | chr17 | 30155724 | 30155926 | + | 10.9 | 0.824 | intron (NM_148926, intron 1 of 4) | intron (NM_148926, intron 1 of 4) | 13793 | NM_148926 | 21769 | Mm.220972 | NM_148926 | ENSMUSG00000044477 | Zfand3 | AW539211|MGC103362|MGC118625|TEG-27|Tex27 | zinc finger, AN1-type domain 3
chr11-192 | chr11 | 8475156 | 8475358 | + | 10.9 | 0.667 | [NAME] (NM_001083587, intron 4 of 30) | [NAME] (NM_001083587, intron 4 of 30) | 89281 | NM_001083587 | 319939 | Mm.337820 | NM_001083587 | ENSMUSG00000020422 | Tns3 | BC023928|F830010I22Rik|TEM6|Tens1 | tensin 3
chr7-122 | chr7 | 148842052 | 148842254 | + | 10.9 | 0.667 | promoter-TSS (NM_181729) | promoter-TSS (NM_181729) | -946 | NM_181729 | 353328 | Mm.246621 | NM_181729 | ENSMUSG00000048191 | Muc6 | - | mucin 6, gastric
chr5-70 | chr5 | 103282857 | 103283059 | + | 10.9 | 0.737 | [NAME] (NM_146161, intron 3 of 8) | L1VL2|LINE|L1 | 357395 | NM_001081567 | 26414 | Mm.472459 | NM_001081567 | ENSMUSG00000046709 | Mapk10 | C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK | mitogen-activated protein kinase 10
chr7-123 | chr7 | 150649946 | 150650148 | + | 10.9 | 0.833 | Intergenic | Intergenic | -3092 | NM_001161624 | 12577 | Mm.168789 | NM_001161624 | ENSMUSG00000037664 | Cdkn1c | AL024410|CDKI|Kip2|p57(kip2)|p57Kip2 | cyclin-dependent kinase inhibitor 1C (P57)
chr9-73 | chr9 | 46835331 | 46835533 | + | 10.9 | 0.75 | Intergenic | Lx2|LINE|L1 | 28608 | NM_001243258 | 215467 | Mm.246572 | NM_001243258 |  | Gm4791 | D930036J05 | predicted gene 4791
chr8-477 | chr8 | 87808341 | 87808543 | + | 10.9 | 0.882 | [NAME], intron 5 of 16) | U6|snRNA|snRNA | 14954 | NM_022997 | 65114 | Mm.296520 | NM_022997 | ENSMUSG00000031696 | Vps35 | AI647796|Mem3 | vacuolar protein sorting 35
chr1-127 | chr1 | 57393498 | 57393700 | + | 10.9 | 0.882 | Intergenic | B4A|SINE|B4 | 40789 | NR_037999 | 75323 | Mm.362968 | NR_037999 |  | 4930558J18Rik | - | RIKEN cDNA 4930558J18 gene
chr12-447 | chr12 | 100843093 | 100843295 | + | 10.9 | 0.778 | Intergenic | Lx8|LINE|L1 | 22990 | NR_045288 | 73457 | Mm.383439 | NR_045288 |  | 1700064M15Rik | - | RIKEN cDNA 1700064M15 gene
chr18-41 | chr18 | 75436688 | 75436890 | + | 10.9 | 0.882 | [NAME], intron 16 of 16) | [NAME], intron 16 of 16) | 20182 | NR_045394 | 100503117 | [NAME] | NR_045393 |  | 2010010A06Rik | 5033420E22Rik | RIKEN cDNA 2010010A06 gene
chr7-91 | chr7 | 52148053 | 52148255 | + | 10.9 | 0.765 | promoter-TSS (NM_029365) | promoter-TSS (NM_029365) | -418 | NM_029365 | 75613 | Mm.157778 | NM_029365 | ENSMUSG00000002968 | Med25 | 2610034E13Rik|2610529E18Rik|ESTM2|X83308 | mediator of RNA polymerase II transcription, subunit 25 homolog (yeast)
chr19-57 | chr19 | 43517340 | 43517542 | + | 10.9 | 0.706 | [NAME] (NM_031396, intron 1 of 10) | MARNA|DNA|Mariner | 2515 | NM_031396 | 83674 | Mm.329864 | NM_031396 | ENSMUSG00000025189 | Cnnm1 | AI846314|Acdp1|CLP-1 | cyclin M1
chr12-584 | chr12 | 111975070 | 111975272 | + | 10.9 | 0.882 | promoter-TSS (NM_027149) | promoter-TSS (NM_027149) | -988 | NM_027149 | 69641 | Mm.435546 | NM_027149 | ENSMUSG00000037957 | Wdr20a | 2310040A13Rik|AI549910|WDR20 | WD repeat domain 20A
chr11-234 | chr11 | 104151161 | 104151363 | + | 10.9 | 0.609 | exon (NM_001038609, exon 4 of 12) | exon (NM_001038609, exon 4 of 12) | 58512 | NM_010838 | 17762 | [NAME] | NM_010838 | ENSMUSG00000018411 | Mapt | AI413597|AW045860|Mtapt|Tau | microtubule-associated protein tau
chr1-155 | chr1 | 137859017 | 137859219 | + | 10.9 | 0.875 | intron (NM_177642, intron 20 of 26) | intron (NM_177642, intron 20 of 26) | -43517 | NM_019645 | 18772 | Mm.4494 | NM_019645 | ENSMUSG00000026413 | Pkp1 | AI528551 | plakophilin 1
chr6-183 | chr6 | 117130713 | 117130915 | + | 10.9 | 0.714 | 3' UTR (NM_013655, exon 4 of 4) | 3' UTR (NM_013655, exon 4 of 4) | 12261 | NM_021704 | 20315 | Mm.303231 | NM_001012477 | ENSMUSG00000061353 | Cxcl12 | AI174028|Pbsf|Scyb12|Sdf1|Sdf1a|Sdf1b|Tlsf|Tlsfa|Tlsfb|Tpar1 | chemokine (C-X-C motif) ligand 12
chr11-223 | chr11 | 98310270 | 98310472 | + | 10.9 | 0.714 | intron (NM_010346, intron 1 of 14) | intron (NM_010346, intron 1 of 14) | 2223 | NM_010346 | 14786 | Mm.276702 | NM_010346 | ENSMUSG00000019312 | [NAME] | KIAA4028|MGC78181|mKIAA4028 | growth factor receptor bound protein 7
chr4-218 | chr4 | 153007736 | 153007938 | + | 10.9 | 0.778 | Intergenic | Intergenic | -150898 | NM_001099299 | 230959 | Mm.318874 | NM_001099299 | ENSMUSG00000039546 | Ajap1 | Gm573 | adherens junction associated protein 1
chr4-143 | chr4 | 29617928 | 29618130 | + | 10.9 | 0.833 | Intergenic | Intergenic | 877734 | NM_010141 | 13841 | Mm.257266 | NM_001122889 | ENSMUSG00000028289 | Epha7 | Cek11|Ebk|Ehk3|Hek11|Mdk1 | Eph receptor A7
chr4-147 | chr4 | 46058310 | 46058512 | + | 10.9 | 0.75 | [NAME] (NM_021883, intron 1 of 9) | [NAME] (NM_021883, intron 1 of 9) | 6317 | NM_021883 | 21916 | Mm.331588 | NM_021883 | ENSMUSG00000028328 | Tmod1 | E-Tmod|MGC124125|MGC124126|Tmod | [NAME]
chr6-242 | chr6 | 141549544 | 141549746 | + | 10.9 | 0.7 | Intergenic | RLTR9E|LTR|ERVK | -28394 | NM_020495 | 28253 | Mm.272223 | NM_020495 | ENSMUSG00000030236 | Slco1b2 | 7330442B20Rik|OATP-C|OATP2|Oatp1b2|Oatp4|Slc21a10|Slc21a6|lst-1|mlst-1 | solute carrier organic anion transporter family, member 1b2
chr17-110 | chr17 | 27863006 | 27863208 | + | 10.9 | 0.778 | [NAME] (NM_013891, intron 1 of 5) | [NAME] (NM_013891, intron 1 of 5) | 2789 | NM_013891 | 30051 | Mm.26768 | NM_013891 | ENSMUSG00000024215 | Spdef | PDEF|Pse | SAM pointed domain containing ets transcription factor
chr7-83 | chr7 | 28259725 | 28259927 | + | 10.9 | 0.737 | [NAME] (NM_133210, intron 1 of 1) | [NAME] (NM_133210, intron 1 of 1) | 967 | NM_133210 | 170742 | Mm.200120 | NM_133210 | ENSMUSG00000055200 | Sertad3 | AW124805|D1Mgi51|Rbt1|Sei3 | SERTA domain containing 3
chr9-76 | chr9 | 56769515 | 56769717 | + | 10.9 | 0.737 | intron (NM_175483, intron 1 of 1) | ORR1D1|LTR|MaLR | 6562 | NM_175483 | 235406 | Mm.473464 | NM_175483 | ENSMUSG00000032733 | Snx33 | E130307J07Rik|Sh3px3 | sorting nexin 33
chr14-72 | chr14 | 66897990 | 66898192 | + | 10.9 | 0.778 | [NAME] 29) | [NAME] 29) | 1798 | NM_172498 | 19229 | Mm.21613 | NM_001162365 | ENSMUSG00000059456 | Ptk2b | CADTK|CAKB|CAKbeta|E430023O05Rik|FADK2|FAK2|PYK2|Raftk | PTK2 protein tyrosine kinase 2 beta
chr8-426 | chr8 | 17076957 | 17077159 | + | 10.9 | 0.591 | [NAME] intron 2 of 69) | Lx3C|LINE|L1 | 458327 | NM_053171 | 94109 | Mm.436988 | NM_053171 | ENSMUSG00000060924 | Csmd1 | B930082H09|KIAA1890|mKIAA1890 | CUB and Sushi multiple domains 1
chr1-163 | chr1 | 173041662 | 173041864 | + | 10.9 | 0.762 | Intergenic | Intergenic | -10029 | NM_001081275 | 75472 | Mm.32760 | NM_001081275 | ENSMUSG00000026649 | 1700009P17Rik | AV282292|Flattop|Fltp|MGC74123 | RIKEN cDNA 1700009P17 gene
chr4-207 | chr4 | 134473230 | 134473432 | + | 10.9 | 0.938 | Intergenic | Intergenic | -2500 | NM_027935 | 71817 | Mm.88349 | NM_027935 | ENSMUSG00000028822 | Tmem50a | 3200001F09Rik|CAM|Smp1 | [NAME] 50A
chr12-439 | chr12 | 99984542 | 99984744 | + | 10.9 | 0.6 | promoter-TSS (NM_001008506) | promoter-TSS (NM_001008506) | -535 | NM_001160107 | 75553 | Mm.25549 | NM_001008506 | ENSMUSG00000021012 | Zc3h14 | 1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748 | zinc finger CCCH type containing 14
chr2-65 | chr2 | 154876911 | 154877113 | + | 10.9 | 0.727 | TTS (NM_015770) | TTS (NM_015770) | 23221 | NM_016661 | 269378 | Mm.371964 | NM_016661 | ENSMUSG00000027597 | Ahcy | AA987153|AL024110|CuBP|MGC102079|MGC118063|MGC19228|SAHH | S-adenosylhomocysteine hydrolase
chr17-109 | chr17 | 27740786 | 27740988 | + | 10.9 | 0.7 | intron (NM_019837, intron 1 of 4) | intron (NM_019837, intron 1 of 4) | 19510 | NM_019837 | 56409 | Mm.144699 | NM_019837 | ENSMUSG00000024213 | Nudt3 | 1110011B09Rik|AA960325|Dipp | nudix (nucleotide diphosphate linked moiety X)-type motif 3
chr10-67 | chr10 | 79488459 | 79488661 | + | 10.9 | 0.625 | intron (NM_001142701, intron 12 of 22) | intron (NM_001142701, intron 12 of 22) | 6140 | NM_027521 | 70719 | Mm.243954 | NM_001142701 | ENSMUSG00000035697 | Hmha1 | 6330406L22Rik|AW539505|Ha-1|KIAA0223 | histocompatibility (minor) HA-1
chr17-136 | chr17 | 48124085 | 48124287 | + | 10.9 | 0.7 | Intergenic | Intergenic | 51057 | NM_029689 | 76651 |  | NM_029689 |  | 1700122O11Rik | - | RIKEN cDNA 1700122O11 gene
chr8-451 | chr8 | 49182790 | 49182992 | + | 10.9 | 0.842 | Intergenic | Intergenic | -1555 | NM_001161516 | 320685 | [NAME] | [NAME] | ENSMUSG00000031562 | Dctd | 6030466N05Rik | dCMP deaminase
chr10-82 | chr10 | 127481032 | 127481234 | + | 10.9 | 0.591 | exon (NM_001113199, exon 3 of 9) | exon (NM_001113199, exon 3 of 9) | 8731 | NM_001113199 | 17938 | Mm.3746 | NM_001113199 | ENSMUSG00000061315 | [NAME] | AL022831|AL024382|Gm1878|mKIAA0363|skNAC | nascent polypeptide-associated complex alpha polypeptide
chr8-424 | chr8 | 14333677 | 14333879 | + | 10.9 | 0.778 | intron (NM_172910, intron 3 of 15) | intron (NM_172910, intron 3 of 15) | 237903 | NM_172910 | 244310 | Mm.404697 | NM_001145965 | ENSMUSG00000047495 | Dlgap2 | 6430596N04Rik|DAP2|Sapap2 | discs, large (Drosophila) homolog-associated protein 2
chr5-94 | chr5 | 143600133 | 143600335 | + | 10.9 | 0.778 | Intergenic | ID_B1|SINE|B4 | -21168 | NM_001122730 | 231861 | Mm.480618 | NM_001122730 | ENSMUSG00000039477 | Tnrc18 | BC025631|EG381742|MGC59613|Zfp469 | trinucleotide repeat containing 18
chr8-553 | chr8 | 116982451 | 116982653 | + | 10.9 | 0.75 | [NAME] (NM_019573, intron 4 of 8) | [NAME] (NM_019573, intron 4 of 8) | 19000 | NM_019573 | 80707 | Mm.440420 | NM_019573 | ENSMUSG00000004637 | Wwox | 5330426P09Rik|9030416C10Rik|WOX1 | WW domain-containing oxidoreductase
chr12-436 | chr12 | 99621147 | 99621349 | + | 10.9 | 0.75 | Intergenic | RLTR9A2|LTR|ERVK | 114381 | NM_008152 | 14744 | Mm.378924 | NM_008152 | ENSMUSG00000021886 | Gpr65 | [NAME] | G-protein coupled receptor 65
chr18-25 | chr18 | 3337688 | 3337890 | + | 10.9 | 0.7 | promoter-TSS (NM_001110851) | promoter-TSS (NM_001110851) | -202 | NM_001110850 | 12916 | Mm.5244 | NM_001110850 | ENSMUSG00000063889 | Crem | ICER | cAMP responsive element modulator
chr6-224 | chr6 | 128258337 | 128258539 | + | 10.9 | 0.75 | Intergenic | Intergenic | -7607 | NM_011567 | 21679 | Mm.14774 | NM_001080979 | ENSMUSG00000030353 | Tead4 | ETFR-2|Etfr2|FR-19|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a | TEA domain family member 4
chr9-84 | chr9 | 98015145 | 98015347 | + | 10.9 | 0.889 | Intergenic | Intergenic | -81660 | NM_022319 | 64085 | Mm.440903 | NM_022319 | ENSMUSG00000032452 | Clstn2 | 2900042C18Rik|AI448973|CSTN2|Cs2|Cst-2|KIAA4134|mKIAA4134 | calsyntenin 2
chr8-441 | chr8 | 26541858 | 26542060 | + | 10.9 | 0.778 | Intergenic | L2a|LINE|L2 | -87285 | NM_001079909 | 14182 | Mm.265716 | NM_001079908 | ENSMUSG00000031565 | Fgfr1 | AW208770|Eask|FLG|Fgfr-1|Flt-2|Hspy | fibroblast growth factor receptor 1
chr15-39 | chr15 | 31531467 | 31531669 | + | 10.9 | 0.882 | promoter-TSS (NM_007637) | promoter-TSS (NM_007637) | -9 | NM_007637 | 12465 | Mm.282158 | NM_007637 | ENSMUSG00000022234 | Cct5 | Ccte|TCPE|mKIAA0098 | chaperonin containing Tcp1, subunit 5 (epsilon)
chr8-603 | chr8 | 126922730 | 126922932 | + | 10.9 | 0.524 | [NAME] 6) | [NAME] 6) | 35005 | NM_171824 | 209966 | Mm.234233 | NM_171824 | ENSMUSG00000050751 | Pgbd5 | 2900019M05Rik|AI854313 | piggyBac transposable element derived 5
chr19-44 | chr19 | 6967037 | 6967239 | + | 10.9 | 0.778 | Intergenic | Intergenic | 16997 | NM_012021 | 54683 | Mm.279782 | NM_012021 | ENSMUSG00000024953 | Prdx5 | AOEB166|AOPP|Pmp20|Prdx6|PrxV | peroxiredoxin 5
chr9-83 | chr9 | 96954687 | 96954889 | + | 10.9 | 0.778 | Intergenic | Intergenic | -36014 | NM_145134 | 211949 | Mm.489787 | NM_145134 | ENSMUSG00000046997 | Spsb4 | D030068E18Rik|SSB-4|Ssb4 | splA/ryanodine receptor domain and SOCS box containing 4
chr12-378 | chr12 | 32568064 | 32568266 | + | 10.9 | 0.778 | [NAME] (NM_001163126, intron 16 of 22) | [NAME] (NM_001163126, intron 16 of 22) | 67235 | [NAME] | 73389 | Mm.458534 | NM_153198 | ENSMUSG00000002996 | Hbp1 | 1700058O05Rik|BE629963|C330012F01Rik|C86454 | high mobility group box transcription factor 1
chr8-416 | chr8 | 12212872 | 12213074 | + | 10.9 | 0.667 | Intergenic | Intergenic | -172798 | NR_027975 | 434280 | Mm.447484 | NM_001013812 |  | [NAME] | EG434280 | predicted gene 5607
chr2-42 | chr2 | 26490861 | 26491063 | + | 10.9 | 0.682 | [NAME] (NM_019833, intron 4 of 4) | [NAME] (NM_019833, intron 4 of 4) | 2543 | NR_028572 | 100306955 | Mm.27103 | NR_028572 |  | Snora43 | ACA43 | small nucleolar RNA, H/ACA box 43
chr8-402 | chr8 | 3516765 | 3516967 | + | 10.9 | 0.7 | [NAME] (NM_015801, intron 2 of 33) | CpG | 1482 | NM_015801 | 50767 | Mm.23085 | NM_001122818 | ENSMUSG00000004565 | Pnpla6 | AI661849|MSws|Nte | patatin-like phospholipase domain containing 6
chr7-104 | chr7 | 87175526 | 87175728 | + | 10.9 | 0.789 | intron (NM_175433, intron 1 of 4) | intron (NM_175433, intron 1 of 4) | 4513 | NM_175433 | 209225 | Mm.290925 | NM_001145999 | ENSMUSG00000048897 | Zfp710 | 5430400N05Rik|9830165K13|AI324798|Znf710 | zinc finger protein 710
chr14-82 | chr14 | 99019707 | 99019909 | + | 10.9 | 0.619 | Intergenic | RMER1B|Other|Other | 425547 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr18-34 | chr18 | 35991058 | 35991260 | + | 10.9 | 0.85 | intron (NM_133687, intron 1 of 2) | CpG | 1687 | NM_133687 | 67393 | Mm.94560 | NM_133687 | ENSMUSG00000046668 | Cxxc5 | 4930415K17Rik|MGC101987 | CXXC finger 5
chr5-75 | chr5 | 114514314 | 114514516 | + | 10.9 | 0.889 | [NAME] (NM_026805, intron 3 of 15) | [NAME] (NM_026805, intron 3 of 15) | 26974 | NM_026805 | 68666 | Mm.63584 | NM_026805 | ENSMUSG00000042078 | Svop | 1110030H18Rik|AI415691|msvop | SV2 related protein
chr6-193 | chr6 | 120228866 | 120229068 | + | 10.9 | 0.882 | [NAME] (NM_198884, intron 1 of 19) | [NAME] (NM_198884, intron 1 of 19) | 15610 | NM_198884 | 330406 | Mm.321840 | NM_198884 | ENSMUSG00000041372 | B4galnt3 | AB114826|B4GalNAcT3|C330047A21 | beta-1,4-N-acetyl-galactosaminyl transferase 3
chr17-100 | chr17 | 24551052 | 24551254 | + | 10.9 | 0.773 | promoter-TSS (NM_009070) | promoter-TSS (NM_009070) | 305 | NR_033554 | 654822 | Mm.489806 | NM_001039561 |  | D330041H03Rik | - | RIKEN cDNA D330041H03 gene
chrX-33 | chrX | 103382146 | 103382348 | + | 10.9 | 0.7 | promoter-TSS (NM_008828) | promoter-TSS (NM_008828) | -216 | NM_008828 | 18655 | Mm.336205 | NM_008828 | ENSMUSG00000062070 | Pgk1 | MGC118097|Pgk-1 | phosphoglycerate kinase 1
chr14-87 | chr14 | 99373436 | 99373638 | + | 10.9 | 0.722 | Intergenic | Intergenic | 71818 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr3-49 | chr3 | 104557666 | 104557868 | + | 10.9 | 0.545 | Intergenic | Intergenic | 22698 | NM_183224 | 329731 | Mm.408712 | NM_183224 | ENSMUSG00000055865 | Fam19a3 | 7530404M11Rik|TAFA3|Tafa-3 | family with sequence similarity 19, member [NAME]
chr15-47 | chr15 | 78609011 | 78609213 | + | 10.9 | 0.85 | intron (NM_130859, intron 17 of 20) | L2|LINE|L2 | -5237 | NM_008595 | 17305 | Mm.149235 | NM_008595 | ENSMUSG00000018169 | [NAME] | AW546563 | MFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
chr6-245 | chr6 | 143066629 | 143066831 | + | 10.9 | 0.737 | Intergenic | ORR1E|LTR|MaLR | -18103 | NM_001109688 | 74741 | Mm.130260 | NM_001109688 | ENSMUSG00000030279 | 5730419I09Rik | C030008B15Rik|CDP138|Kiaa0528 | RIKEN cDNA 5730419I09 gene
chr1-152 | chr1 | 135277249 | 135277451 | + | 10.9 | 0.875 | TTS (NM_175443) | TTS (NM_175443) | 17201 | NM_175443 | 214253 | Mm.52111 | NM_175443 | ENSMUSG00000070644 | Etnk2 | 4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1 | ethanolamine kinase 2
chr3-54 | chr3 | 108357582 | 108357784 | + | 10.9 | 0.765 | promoter-TSS (NR_028538) | promoter-TSS (NR_028538) | -363 | NR_028538 | 100217438 |  | NR_028538 |  | Scarna2 | MBII-382 | small [NAME] body-specific RNA 2
chr13-63 | chr13 | 36671796 | 36671998 | + | 10.9 | 0.833 | Intergenic | (TG)n|Simple_repeat|Simple_repeat | 154426 | NM_153529 | 68404 | Mm.232930 | NM_153529 | ENSMUSG00000039114 | Nrn1 | 0710008J23Rik|MGC40786|Nrn|cpg15 | neuritin 1
chr8-474 | chr8 | 87477137 | 87477339 | + | 10.9 | 0.6 | intron (NM_144929, intron 4 of 5) | B3A|SINE|B2 | 6348 | NM_144929 | 234542 | Mm.461701 | NM_144929 | ENSMUSG00000048617 | Rtbdn | A330096I21Rik|BC022744|MGC31644|MGC38683|MGC38855|Rtbnd | retbindin
chr8-555 | chr8 | 119738364 | 119738566 | + | 10.9 | 0.7 | Intergenic | Intergenic | -42454 | NM_001163262 | 74440 | Mm.233181 | NM_001163262 | ENSMUSG00000034390 | 4933407C03Rik | 5830471E12Rik|AI314065|AI464126|Cmip | RIKEN cDNA 4933407C03 gene
chr5-80 | chr5 | 120131838 | 120132040 | + | 10.9 | 0.65 | [NAME], intron 6 of 6) | [NAME], intron 6 of 6) | 9288 | NR_040416 | 433944 |  | NR_040416 |  | LOC433944 | - | uncharacterized LOC433944
chr3-39 | chr3 | 61167444 | 61167646 | + | 10.9 | 0.583 | promoter-TSS (NM_028712) | promoter-TSS (NM_028712) | -884 | NM_028712 | 74012 | Mm.477648 | NM_028712 | ENSMUSG00000036894 | Rap2b | 4021402C18Rik|AA408554 | RAP2B, member of RAS oncogene family
chr12-425 | chr12 | 90419568 | 90419770 | + | 10.9 | 0.7 | [NAME] (NM_172544, intron 2 of 19) | [NAME] (NM_172544, intron 2 of 19) | 227835 | NM_172544 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr9-94 | chr9 | 113900822 | 113901024 | + | 10.9 | 0.789 | intron (NM_178624, intron 5 of 14) | B3|SINE|B2 | 34946 | NM_178624 | 72179 | Mm.386808 | NM_178624 | ENSMUSG00000032507 | Fbxl2 | 2810423A21Rik|Fbl3 | F-box and leucine-rich repeat protein 2
chr4-180 | chr4 | 116973869 | 116974071 | + | 10.9 | 0.833 | intron (NM_025739, intron 3 of 14) | intron (NM_025739, intron 3 of 14) | 49376 | NM_026837 | 68777 | Mm.331805 | NM_026837 | ENSMUSG00000048772 | Tmem53 | 1110038M16Rik|1500001P22Rik|1700012A05Rik | [NAME] 53
chr6-233 | chr6 | 135312982 | 135313184 | + | 10.9 | 0.722 | 5' UTR (NM_010128, exon 1 of 5) | 5' UTR (NM_010128, exon 1 of 5) | 134 | NM_010128 | 13730 | Mm.182785 | NM_010128 | ENSMUSG00000030208 | Emp1 | I-8-09|TMP | epithelial membrane protein 1
chr12-443 | chr12 | 100671957 | 100672159 | + | 10.9 | 0.833 | [NAME] intron 1 of 5) | [NAME] intron 1 of 5) | 16226 | NM_183186 | 71375 | Mm.489662 | NM_183186 | ENSMUSG00000033713 | Foxn3 | 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1|MGC107530|MGC36260 | forkhead box N3
chr8-509 | chr8 | 97728184 | 97728386 | + | 10.9 | 0.542 | Intergenic | ID_B1|SINE|B4 | -61845 | NM_001145831 | 16582 | Mm.378951 | NM_001145831 | ENSMUSG00000031788 | [NAME] | AI325457|BB123200 | [NAME] member [NAME]
chr16-49 | chr16 | 26316495 | 26316697 | + | 10.9 | 0.75 | Intergenic | Intergenic | 55329 | NM_016674 | 12737 | Mm.289441 | NM_016674 | ENSMUSG00000022512 | Cldn1 | AI596271 | claudin 1
chr17-118 | chr17 | 30824918 | 30825120 | + | 10.9 | 0.778 | [NAME] (NM_013811, intron 21 of 92) | RMER17B|LTR|ERVK | 61138 | NM_013811 | 13417 | Mm.446558 | NM_013811 | ENSMUSG00000033826 | Dnahc8 | ATPase|Hst6.7b|P1-Loop | [NAME], axonemal, heavy chain 8
chr8-446 | chr8 | 27776303 | 27776505 | + | 10.9 | 0.944 | Intergenic | Intergenic | 158491 | NR_045904 | 72316 |  | NR_045904 |  | 2310008N11Rik | - | RIKEN cDNA 2310008N11 gene
chr1-128 | chr1 | 59272600 | 59272802 | + | 10.9 | 0.75 | exon (NM_146109, exon 4 of 13) | exon (NM_146109, exon 4 of 13) | 21236 | NM_001159948 | 74018 | Mm.272078 | NM_001159948 | ENSMUSG00000026024 | Als2 | 3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|MGC27807|mKIAA1563 | amyotrophic lateral sclerosis 2 (juvenile) homolog (human)
chr14-73 | chr14 | 73843561 | 73843763 | + | 10.9 | 0.765 | Intergenic | Intergenic | -58584 | [NAME] | 16432 | Mm.4266 | [NAME] | ENSMUSG00000022108 | Itm2b | AI256040|Bri|Bri2|D14Sel6|E25BMM|imBRI2 | integral membrane protein 2B
chr2-47 | chr2 | 32461560 | 32461762 | + | 10.9 | 0.579 | promoter-TSS (NM_001025310) | promoter-TSS (NM_001025310) | -820 | NM_001025310 | 50935 | [NAME] | NM_001025310 | ENSMUSG00000026811 | St6galnac6 | Siat7f | ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
chr14-92 | chr14 | 99681564 | 99681766 | + | 10.9 | 0.789 | Intergenic | B2_Mm1t|SINE|B2 | -16245 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr16-60 | chr16 | 94093281 | 94093483 | + | 10.9 | 0.684 | intron (NM_011377, intron 1 of 10) | intron (NM_011377, intron 1 of 10) | 7877 | NM_011377 | 20465 | Mm.4775 | NM_011377 | ENSMUSG00000062713 | Sim2 | bHLHe15 | single-minded homolog 2 (Drosophila)
chr5-65 | chr5 | 32120268 | 32120470 | + | 10.9 | 0.875 | intron (NM_181282, intron 4 of 11) | intron (NM_181282, intron 4 of 11) | 119946 | NM_181282 | 107976 | Mm.482126 | NM_144541 | ENSMUSG00000052139 | Bre | 6030405P19Rik|AI429776|B830038C02Rik | brain and reproductive organ-expressed protein
chr11-208 | chr11 | 79449723 | 79449925 | + | 10.9 | 0.778 | intron (NM_175543, intron 3 of 14) | intron (NM_175543, intron 3 of 14) | -13159 | NR_003283 | 790912 | Mm.447313 | NR_003283 |  | [NAME] | OTTMUSG00000000185 | predicted gene 11202
chr11-203 | chr11 | 69665510 | 69665712 | + | 10.9 | 0.619 | TTS (NR_033133) | TTS (NR_033133) | 5465 | NR_033133 | 70310 | Mm.28874 | NM_001168497 | ENSMUSG00000019461 | Plscr3 | 2210403O21Rik|2610037N06Rik|ESTM3|X83310 | phospholipid scramblase 3
chr8-611 | chr8 | 128051501 | 128051703 | + | 10.9 | 0.714 | Intergenic | Intergenic | -34992 | NM_001081337 | 244668 | Mm.271668 | NM_001081337 | ENSMUSG00000001995 | Sipa1l2 | BC058408|mKIAA1389 | signal-induced proliferation-associated 1 like 2
chr13-52 | chr13 | 12487309 | 12487511 | + | 10.9 | 0.667 | promoter-TSS (NM_144835) | promoter-TSS (NM_144835) | -232 | NM_144835 | 217995 | Mm.171186 | NM_144835 | ENSMUSG00000050244 | Heatr1 | AA517551|B130016L12Rik|BC019693|MGC30806 | HEAT repeat containing 1
chr7-96 | chr7 | 52962766 | 52962968 | + | 10.9 | 0.85 | [NAME] (NM_016974, intron 2 of 3) | [NAME] (NM_016974, intron 2 of 3) | 2250 | NM_016974 | 13170 | Mm.378235 | NM_016974 | ENSMUSG00000059824 | [NAME] | - | D site albumin promoter binding protein
chr16-52 | chr16 | 42875785 | 42875987 | + | 10.9 | 0.7 | promoter-TSS (NR_040521) | promoter-TSS (NR_040521) | -11 | NR_040522 | 75722 | Mm.243747 | NR_040521 |  | 4932412D23Rik | ENSMUSG00000075070|Gm10809 | RIKEN cDNA 4932412D23 gene
chr8-495 | chr8 | 93704559 | 93704761 | + | 10.9 | 0.941 | Intergenic | Intergenic | -45265 | NM_010241 | 14339 | Mm.324588 | NM_010241 | ENSMUSG00000031667 | Aktip | AL023020|Fif|Ft|Ft1|Fts | thymoma viral proto-oncogene 1 interacting protein
chr11-211 | chr11 | 85125548 | 85125750 | + | 10.9 | 0.706 | intron (NM_016910, intron 1 of 5) | intron (NM_016910, intron 1 of 5) | 893 | NM_016910 | 53892 | Mm.45609 | NM_016910 | ENSMUSG00000020525 | Ppm1d | AV338790|Wip1 | protein phosphatase 1D magnesium-dependent, delta isoform
chr6-206 | chr6 | 124959677 | 124959879 | + | 10.9 | 0.882 | promoter-TSS (NM_175557) | promoter-TSS (NM_175557) | 91 | NM_175557 | 269800 | Mm.108677 | NM_001252083 | ENSMUSG00000038346 | Zfp384 | BB163993|C130073D16Rik|Ciz|NP|Nmp4 | zinc finger protein 384
chr8-462 | chr8 | 80671174 | 80671376 | + | 10.9 | 0.714 | Intergenic | Intergenic | -65966 | NM_183096 | 73301 | Mm.61243 | NM_183096 | ENSMUSG00000037101 | Ttc29 | 1700031F13Rik | tetratricopeptide repeat domain 29
chr17-105 | chr17 | 27428970 | 27429172 | + | 10.9 | 0.765 | Intergenic | Intergenic | -87688 | NM_146075 | 224640 | Mm.29689 | NM_146075 | ENSMUSG00000044857 | [NAME] | BC026588|Lem2|MGC37253|NET25 | LEM domain containing 2
chr12-531 | chr12 | 108133190 | 108133392 | + | 10.9 | 0.778 | Intergenic | Intergenic | -178757 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr10-62 | chr10 | 63552432 | 63552634 | + | 10.9 | 0.938 | 5' UTR (NM_178678, exon 1 of 3) | 5' UTR (NM_178678, exon 1 of 3) | 470 | NM_178678 | 216028 | Mm.431318 | NM_178678 | ENSMUSG00000042846 | Lrrtm3 | 9630044H04Rik | leucine rich repeat transmembrane neuronal 3
chr7-116 | chr7 | 134621958 | 134622160 | + | 10.9 | 0.682 | Intergenic | Intergenic | -6676 | NM_010183 | 14123 | Mm.323505 | NM_010183 | ENSMUSG00000042423 | Fbrs | Fbs|Fbs1 | fibrosin
chr4-155 | chr4 | 82962778 | 82962980 | + | 10.9 | 0.789 | [NAME] (NM_027238, intron 1 of 19) | [NAME] (NM_027238, intron 1 of 19) | 7214 | NM_027238 | 69863 | Mm.5540 | NM_025782 | ENSMUSG00000038172 | Ttc39b | 1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585 | tetratricopeptide repeat domain 39B
chr4-200 | chr4 | 124000980 | 124001182 | + | 10.9 | 0.6 | Intergenic | Intergenic | 162121 | NR_040774 | 78460 | Mm.452060 | NR_040774 |  | 1700057H15Rik | - | RIKEN cDNA 1700057H15 gene
chr8-550 | chr8 | 115233529 | 115233731 | + | 10.9 | 0.737 | [NAME] (NM_130457, intron 3 of 23) | [NAME] (NM_130457, intron 3 of 23) | 139687 | NM_130457 | 170571 | Mm.403088 | NM_130457 | ENSMUSG00000031772 | Cntnap4 | Caspr4|E130114F09Rik | contactin associated protein-like 4
chr2-54 | chr2 | 91284763 | 91284965 | + | 10.9 | 0.737 | promoter-TSS (NM_175123) | promoter-TSS (NM_175123) | -65 | NM_175123 | 228356 | Mm.386861 | NM_175123 | ENSMUSG00000040591 | 1110051M20Rik | AI586322|MGC40841|MGC4707 | RIKEN cDNA 1110051M20 gene
chr11-224 | chr11 | 98636673 | 98636875 | + | 10.9 | 0.882 | promoter-TSS (NM_145434) | promoter-TSS (NM_145434) | -218 | NM_145434 | 217166 | Mm.390397 | NM_145434 | ENSMUSG00000020889 | Nr1d1 | A530070C09Rik|R75201 | nuclear receptor subfamily 1, group D, member 1
chr9-88 | chr9 | 106794512 | 106794714 | + | 10.9 | 0.7 | promoter-TSS (NM_029103) | promoter-TSS (NM_029103) | -344 | NM_029103 | 74840 | Mm.29778 | NM_029103 | ENSMUSG00000032575 | Manf | 3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17 | [NAME]-derived neurotrophic factor
chr2-70 | chr2 | 170145914 | 170146116 | + | 10.9 | 0.737 | Intergenic | PB1D10|SINE|Alu | -35846 | NR_040610 | 73303 | Mm.443297 | NR_040610 |  | 1700040N02Rik | - | RIKEN cDNA 1700040N02 gene
chr4-150 | chr4 | 61241467 | 61241669 | + | 10.9 | 0.8 | Intergenic | L1VL4|LINE|L1 | 15296 | NM_001200006 | 100039206 | [NAME] | NM_001200006 | ENSMUSG00000089681 | Mup17 | Gm12557|MUP 17|OTTMUSG00000007480 | major urinary protein 17
chr1-132 | chr1 | 84281405 | 84281607 | + | 10.9 | 0.842 | promoter-TSS (NM_001003948) | promoter-TSS (NM_001003948) | -286 | NM_001003948 | 98496 | Mm.187470 | NM_001003948 | ENSMUSG00000045658 | Pid1 | 5033414K04Rik|MGC90850|NYGGF4 | phosphotyrosine interaction domain containing 1
chr4-167 | chr4 | 107729600 | 107729802 | + | 10.9 | 0.737 | intron (NM_011327, intron 13 of 15) | B1_Mur2|SINE|Alu | -25006 | NM_172874 | 242608 | Mm.74710 | NM_172874 | ENSMUSG00000028600 | Podn | 9430070G18|Pcan|SLRR5A | podocan
chr4-160 | chr4 | 102935570 | 102935772 | + | 10.9 | 0.882 | [NAME] intron 4 of 8) | MTE2a|LTR|MaLR | 27797 | NM_027612 | 70941 | Mm.158501 | NM_001163494 | ENSMUSG00000028520 | 4921539E11Rik | MGC130412|MGC130413 | RIKEN cDNA 4921539E11 gene
chr18-42 | chr18 | 75506225 | 75506427 | + | 10.9 | 0.778 | Intergenic | Intergenic | -20693 | NM_001042660 | 17131 | Mm.34407 | NM_008543 | ENSMUSG00000025880 | Smad7 | Madh7 | MAD homolog 7 (Drosophila)
chr8-526 | chr8 | 108385106 | 108385308 | + | 10.9 | 0.789 | intron (NR_033574, intron 1 of 4) | intron (NR_033574, intron 1 of 4) | 647 | NR_033574 | 100043462 | [NAME] | NR_033574 |  | Nutf2-ps1 | ENSMUSG00000071497|Gm10333|Ntf2|Nutf2 | nuclear transport factor 2, pseudogene 1
chr8-456 | chr8 | 73293219 | 73293421 | + | 10.9 | 0.789 | [NAME] (NM_008841, intron 13 of 15) | [NAME] (NM_008841, intron 13 of 15) | -2758 | NM_023065 | 65972 | Mm.30241 | NM_023065 | ENSMUSG00000031838 | Ifi30 | [NAME] | [NAME] inducible protein 30
chr10-64 | chr10 | 69006597 | 69006799 | + | 10.9 | 0.882 | [NAME], intron 1 of 17) | [NAME], intron 1 of 17) | 10242 | NM_146005 | 11735 | Mm.235960 | NM_009670 | ENSMUSG00000069601 | Ank3 | 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G|MGC14049 | ankyrin 3, epithelial
chr4-159 | chr4 | 100964983 | 100965185 | + | 10.9 | 0.714 | Intergenic | Intergenic | -27197 | NM_146145 | 16451 | Mm.289657 | NM_146145 | ENSMUSG00000028530 | [NAME] | AA960307|C130039L05Rik|MGC37919 | Janus kinase 1
chr16-40 | chr16 | 11063638 | 11063840 | + | 10.9 | 0.765 | Intergenic | Intergenic | -2652 | NM_009223 | 20621 | [NAME] | NM_009223 | ENSMUSG00000037972 | Snn | 2810407J07Rik|AI848521|AW547286|MGC107297 | stannin
chr8-607 | chr8 | 127145788 | 127145990 | + | 10.9 | 0.6 | Intergenic | Intergenic | 41380 | NM_175149 | 69551 | Mm.261920 | NM_175149 | ENSMUSG00000031983 | 2310022B05Rik | - | RIKEN cDNA 2310022B05 gene
chr12-433 | chr12 | 98077685 | 98077887 | + | 10.9 | 0.824 | Intergenic | MMERVK10C-int|LTR|ERVK | -792354 | NM_027076 | 69423 | Mm.46121 | NM_027076 | ENSMUSG00000059695 | 1700019M22Rik | - | RIKEN cDNA 1700019M22 gene
chr6-173 | chr6 | 114341489 | 114341691 | + | 10.9 | 0.833 | Intergenic | Intergenic | -6340 | NM_008285 | 15465 | Mm.333327 | NM_008285 | ENSMUSG00000053004 | Hrh1 | Bphs|H1R|HH1R|Hir | histamine receptor H1
chr5-92 | chr5 | 138613081 | 138613283 | + | 10.9 | 0.762 | promoter-TSS (NM_021392) | promoter-TSS (NM_021392) | -67 | NM_021392 | 11781 | Mm.113205 | NM_021392 | ENSMUSG00000019518 | Ap4m1 | 4930443L05Rik|Ap4m4 | adaptor-related protein complex AP-4, mu 1
chr9-93 | chr9 | 113648785 | 113648987 | + | 10.9 | 0.812 | Intergenic | B3|SINE|B2 | -1705 | NM_001114347 | 76499 | [NAME] | NM_001081960 | ENSMUSG00000033392 | Clasp2 | 1500004F14Rik|8030404L10Rik|C77448|CLASP2beta|mKIAA0627 | CLIP associating protein 2
chr1-164 | chr1 | 173152640 | 173152842 | + | 10.9 | 0.75 | promoter-TSS (NM_001037170) | promoter-TSS (NM_001037170) | -96 | NM_001037170 | 641376 | Mm.288374 | NM_001037170 | ENSMUSG00000005674 | Tomm40l | - | translocase of outer mitochondrial membrane 40 homolog-like (yeast)
chr7-69 | chr7 | 4636473 | 4636675 | + | 10.9 | 0.652 | promoter-TSS (NM_024172) | promoter-TSS (NM_024172) | -9 | NM_024172 | 66245 | Mm.6803 | NM_024172 | ENSMUSG00000063802 | Hspbp1 | 1500019G21Rik | HSPA (heat shock [NAME]) binding protein, cytoplasmic cochaperone 1
chr15-58 | chr15 | 102573080 | 102573282 | + | 10.9 | 0.842 | Intergenic | Intergenic | -20572 | NM_026192 | 67488 | Mm.71682 | NM_026192 | ENSMUSG00000023055 | Calcoco1 | 1810009B06Rik|Cocoa|Gcap11|KIAA1536|mKIAA1536 | calcium binding and coiled coil domain 1
chr8-484 | chr8 | 90141593 | 90141795 | + | 10.9 | 0.737 | Intergenic | Intergenic | 53888 | NM_177901 | 330820 | Mm.212913 | NM_177901 | ENSMUSG00000069971 | 4933402J07Rik | - | RIKEN cDNA 4933402J07 gene
chr3-36 | chr3 | 32407983 | 32408185 | + | 10.9 | 0.722 | Intergenic | Intergenic | -1388 | NM_001161818 | 67778 | Mm.285620 | NM_001161818 |  | Zfp639 | 6230400O18Rik|ANC-2H01|ZASC1|Znf639 | zinc finger protein 639
chr12-575 | chr12 | 111390837 | 111391039 | + | 10.9 | 0.85 | non-coding (NR_045466, exon 3 of 3) | non-coding (NR_045466, exon 3 of 3) | 5345 | NR_045466 | 67280 | Mm.390495 | NR_045466 |  | 3110009F21Rik | - | RIKEN cDNA 3110009F21 gene
chr8-411 | chr8 | 10793785 | 10793987 | + | 10.9 | 0.75 | Intergenic | Intergenic | 88568 | NR_040705 | 320014 | Mm.403203 | NR_040705 |  | B930025P03Rik | - | RIKEN cDNA B930025P03 gene
chr19-66 | chr19 | 56443435 | 56443637 | + | 10.9 | 0.842 | intron (NM_008733, intron 14 of 41) | Lx8|LINE|L1 | 20989 | NM_198059 | 18175 | Mm.386769 | NM_008733 | ENSMUSG00000049134 | Nrap | - | nebulin-related anchoring protein
chr6-239 | chr6 | 140561409 | 140561611 | + | 10.9 | 0.7 | Intergenic | Intergenic | -9674 | NM_178803 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr4-220 | chr4 | 154783637 | 154783839 | + | 10.9 | 0.708 | intron (NM_177674, intron 1 of 20) | intron (NM_177674, intron 1 of 20) | 439 | NM_001166029 | 544678 | Mm.472798 | NM_001166029 | ENSMUSG00000042233 | 2010015L04Rik | A530045M11|KIAA1751 | RIKEN cDNA 2010015L04 gene
chr1-126 | chr1 | 48482908 | 48483110 | + | 10.9 | 0.75 | Intergenic | Lx|LINE|L1 | -1572655 | NM_172653 | 227059 | Mm.475398 | NM_172653 | ENSMUSG00000025986 | Slc39a10 | 2900042E17Rik|5430433I10|mKIAA1265 | solute carrier family 39 (zinc transporter), member 10
chr12-389 | chr12 | 87612773 | 87612975 | + | 10.9 | 0.81 | [NAME] (NM_027405, intron 8 of 9) | [NAME] (NM_027405, intron 8 of 9) | 30046 | NM_027405 | 70373 | Mm.252967 | NM_027405 | ENSMUSG00000021254 | 1700020O03Rik | 4732487G21Rik|A630090I05Rik|Kiaa1152 | RIKEN cDNA 1700020O03 gene
chr17-134 | chr17 | 46178143 | 46178345 | + | 10.9 | 0.682 | Intergenic | Intergenic | -8918 | NM_001025257 | 22339 | Mm.282184 | NM_001025250 | ENSMUSG00000023951 | Vegfa | Vegf|Vegf120|Vegf164|Vegf188|Vpf | vascular endothelial growth factor A
chr8-466 | chr8 | 85711565 | 85711767 | + | 10.9 | 0.778 | [NAME] (NM_001111304, intron 1 of 20) | [NAME] (NM_001111304, intron 1 of 20) | 22415 | NM_027758 | 71310 | Mm.24031 | NM_001111304 | ENSMUSG00000031709 | Tbc1d9 | 4933431N12Rik|AI847101|AW490653|C76116 | TBC1 domain family, member 9
chr2-59 | chr2 | 118521519 | 118521721 | + | 10.9 | 0.75 | intron (NM_001033254, intron 10 of 10) | intron (NM_001033254, intron 10 of 10) | 8079 | NM_001081971 | 383787 | Mm.35758 | NM_001081971 | ENSMUSG00000078137 | Gm1337 | Ankrd63 | predicted gene 1337
chr8-445 | chr8 | 27126187 | 27126389 | + | 10.9 | 0.812 | promoter-TSS (NM_008033) | promoter-TSS (NM_008033) | -215 | NM_008033 | 14272 | Mm.3496 | NM_008033 | ENSMUSG00000015994 | Fnta | FTA | farnesyltransferase, CAAX box, alpha
chr12-384 | chr12 | 86447255 | 86447457 | + | 10.9 | 0.667 | promoter-TSS (NM_175198) | promoter-TSS (NM_175198) | 25 | NM_175198 | 73422 | Mm.445281 | NM_175198 | ENSMUSG00000042320 | Prox2 | 1700058C01Rik | prospero homeobox 2
chr7-97 | chr7 | 53081363 | 53081565 | + | 10.9 | 0.762 | intron (NM_153419, intron 6 of 6) | intron (NM_153419, intron 6 of 6) | -1347 | NM_145963 | 211480 | Mm.68170 | NM_145963 | [NAME] | Kcnj14 | A930026G01Rik|IRK4|Kir2.4|MGC25490|MGC38951 | potassium inwardly-rectifying channel, subfamily J, member 14
chr6-166 | chr6 | 113249046 | 113249248 | + | 10.9 | 0.778 | [NAME], intron 16 of 19) | [NAME], intron 16 of 19) | -8044 | NM_030178 | 78783 | Mm.449928 | NM_030178 | ENSMUSG00000001632 | Brpf1 | 4833438B11Rik|4930540D11Rik|Brpf2 | bromodomain and PHD finger containing, 1
[NAME] | chr11 | 44426414 | 44426616 | + | 10.9 | 0.667 | Intergenic | Intergenic | -5121 | NM_007897 | 13591 | Mm.440346 | NM_007897 | ENSMUSG00000057098 | Ebf1 | 9830166E18Rik|AW990631|Ebf|O/E-1|Olf-1|Olf1 | early B cell factor 1
chr8-582 | chr8 | 124083455 | 124083657 | + | 10.9 | 0.65 | intron (NM_133765, intron 4 of 8) | intron (NM_133765, intron 4 of 8) | 15268 | NR_045903 | 72259 | Mm.396206 | NR_045903 |  | 1700030M09Rik | - | RIKEN cDNA 1700030M09 gene
chr6-167 | chr6 | 113574595 | 113574797 | + | 10.9 | 0.636 | intron (NM_009507, intron 1 of 2) | intron (NM_009507, intron 1 of 2) | 681 | NM_009507 | 22346 | Mm.29407 | NM_009507 | ENSMUSG00000033933 | [NAME] | Vhlh | [NAME] tumor suppressor
chr6-155 | chr6 | 30125155 | 30125357 | + | 10.9 | 0.75 | Intergenic | Intergenic | -1367 | NR_038124 | 100463519 | Mm.361139 | NR_038124 |  | BB283400 | BF465573 | expressed sequence BB283400
chr11-216 | chr11 | 94351075 | 94351277 | + | 10.9 | 0.7 | 3' UTR (NM_027984, exon 10 of 10) | 3' UTR (NM_027984, exon 10 of 10) | -4552 | NM_144827 | 217116 | Mm.156123 | NM_144827 | ENSMUSG00000020867 | Spata20 | Tisp78 | spermatogenesis associated 20
chr8-517 | chr8 | 106882535 | 106882737 | + | 10.9 | 0.737 | [NAME] (NM_153582, intron 1 of 3) | [NAME] (NM_153582, intron 1 of 3) | 18142 | NM_024217 | 68119 | Mm.390108 | NM_024217 | [NAME] | Cmtm3 | 9430096L06Rik|AI413895|BNAS2|Cklfsf3 | CKLF-like MARVEL transmembrane domain containing 3
chr5-61 | chr5 | 24327296 | 24327498 | + | 10.9 | 0.8 | intron (NM_053075, intron 1 of 7) | intron (NM_053075, intron 1 of 7) | 20782 | NM_053075 | 19744 | Mm.319175 | NM_053075 | ENSMUSG00000028945 | Rheb | - | [NAME] homolog enriched in brain
chr8-529 | chr8 | 108583057 | 108583259 | + | 10.9 | 0.652 | promoter-TSS (NM_010901) | promoter-TSS (NM_010901) | -345 | NM_010901 | 18021 | Mm.383185 | NM_010901 | ENSMUSG00000031902 | Nfatc3 | C80703|D8Ertd281e|NFAT4|NFATx | nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3
chr11-227 | chr11 | 100606489 | 100606691 | + | 10.9 | 0.652 | exon (NM_001081194, exon 14 of 17) | exon (NM_001081194, exon 14 of 17) | -7146 | NM_024456 | 19345 | Mm.29829 | NM_024456 | ENSMUSG00000019173 | Rab5c | AI326010|Rabl | RAB5C, member RAS oncogene family
chr6-241 | chr6 | 140850651 | 140850853 | + | 10.9 | 0.889 | Intergenic | RMER17A|LTR|ERVK | 277933 | NM_009637 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr8-540 | chr8 | 113272696 | 113272898 | + | 10.9 | 0.842 | [NAME], intron 3 of 6) | [NAME], intron 3 of 6) | 27413 | NM_198625 | 244654 | Mm.334807 | NM_198625 | [NAME] | Mtss1l | ABBA|MGC79213 | metastasis suppressor 1-like
chr6-170 | chr6 | 114185784 | 114185986 | + | 10.9 | 0.938 | exon (NM_172890, exon 9 of 14) | exon (NM_172890, exon 9 of 14) | -46744 | NM_178703 | 232333 | Mm.5260 | NM_178703 | ENSMUSG00000030310 | Slc6a1 | A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1 | solute carrier family 6 (neurotransmitter transporter, GABA), member 1
chr7-124 | chr7 | 150906159 | 150906361 | + | 10.9 | 0.684 | intron (NM_024289, intron 1 of 21) | intron (NM_024289, intron 1 of 21) | 20005 | NM_001199227 | 79196 | Mm.21199 | NM_001199227 | ENSMUSG00000037606 | Osbpl5 | 1110006M06Rik|AI462538|ORP5|Obph1|Osbp2 | [NAME]like 5
chr12-453 | chr12 | 101437958 | 101438160 | + | 10.9 | 0.882 | [NAME] (NM_009790, intron 1 of 5) | CpG | 308 | NM_009790 | 12313 | Mm.285993 | NM_009790 | ENSMUSG00000001175 | Calm1 | AI256814|AI327027|AI461935|AL024000|CaM|Calm|Calm2|Calm3 | calmodulin 1
chr12-446 | chr12 | 100817344 | 100817546 | + | 10.9 | 0.778 | Intergenic | Intergenic | 48739 | NR_045288 | 73457 | Mm.383439 | NR_045288 |  | 1700064M15Rik | - | RIKEN cDNA 1700064M15 gene
chr6-187 | chr6 | 118853068 | 118853270 | + | 10.9 | 0.8 | [NAME] (NM_001256002, intron 3 of 47) | [NAME] (NM_001256002, intron 3 of 47) | 22993 | NR_046053 | 74363 | Mm.399403 | NR_046053 |  | 4931430N09Rik | - | RIKEN cDNA 4931430N09 gene
chr11-215 | chr11 | 93856892 | 93857094 | + | 10.9 | 0.682 | promoter-TSS (NM_001199203) | promoter-TSS (NM_001199203) | -412 | NM_001199203 | 70834 | Mm.260737 | NM_001025428 | ENSMUSG00000020859 | Spag9 | 3110018C07Rik|4733401I23Rik|4831406C20Rik|AW552012|JLP|JSAP2|JSAP2a|Jip4|Mapk8ip4|syd1 | sperm associated antigen 9
chr19-62 | chr19 | 46578541 | 46578743 | + | 10.9 | 0.667 | [NAME] 5) | [NAME] 5) | 2504 | NM_053100 | 93679 | Mm.489609 | NM_053100 | ENSMUSG00000025034 | Trim8 | AA408830|BB006755|GERP|Rnf27 | tripartite motif-containing 8
chr8-599 | chr8 | 126217892 | 126218094 | + | 10.9 | 0.7 | Intergenic | Intergenic | -39865 | NR_040702 | 234863 | Mm.246601 | NR_040702 |  | 6030466F02Rik | - | RIKEN cDNA 6030466F02 gene
chr6-251 | chr6 | 146741409 | 146741611 | + | 10.9 | 0.762 | Intergenic | Intergenic | -12542 | NM_172309 | 272322 | Mm.442075 | NM_172309 | ENSMUSG00000040187 | Arntl2 | 4632430A05Rik|BMAL2|CLIF|MGC124257|MOP9|bHLHe6 | aryl hydrocarbon receptor nuclear translocator-like 2
chr12-487 | chr12 | 105456488 | 105456690 | + | 10.9 | 0.778 | exon (NM_001168295, exon 3 of 5) | exon (NM_001168295, exon 3 of 5) | 3746 | NM_001033335 | 238393 | Mm.483584 | NM_001033335 | ENSMUSG00000066363 | Serpina3f | 2A1|BC049975 | serine (or cysteine) peptidase inhibitor, clade A, member 3F
chr8-478 | chr8 | 87921361 | 87921563 | + | 10.9 | 0.762 | Intergenic | Intergenic | -32239 | NM_175441 | 213435 | Mm.32804 | NM_175441 | ENSMUSG00000031698 | Mylk3 | D830007F02Rik|MGC169607|MLCK | [NAME] chain kinase 3
chr4-144 | chr4 | 33275201 | 33275403 | + | 10.9 | 0.824 | [NAME] (NM_001034867, intron 1 of 6) | [NAME] (NM_001034867, intron 1 of 6) | 1410 | NM_001034867 | 242377 | Mm.484150 | NM_001034867 | ENSMUSG00000054659 | Pm20d2 | Acy1l2|Gm424 | peptidase M20 domain containing 2
chr6-209 | chr6 | 125095028 | 125095230 | + | 10.9 | 0.529 | promoter-TSS (NM_178787) | promoter-TSS (NM_178787) | -130 | NM_178787 | 320678 | Mm.129415 | NM_001039669 | ENSMUSG00000038271 | Iffo1 | 4733401N06Rik|A930037G23Rik|HOM-TES-103|Iffo | intermediate filament family orphan 1
chr12-406 | chr12 | 88189137 | 88189339 | + | 10.9 | 0.842 | Intergenic | MER63B|DNA|AcHobo | 36526 | NM_145836 | 238330 | Mm.248358 | NM_145836 | ENSMUSG00000034168 | 6430527G18Rik | Eap1|Irf2bpl | RIKEN cDNA 6430527G18 gene
chr8-522 | chr8 | 108090100 | 108090302 | + | 10.9 | 0.52 | promoter-TSS (NM_013477) | promoter-TSS (NM_013477) | -261 | NM_013477 | 11972 | Mm.17708 | NM_013477 | ENSMUSG00000013160 | [NAME] | AI267038|Ac39|Atp6d|P39|VATX|Vma6 | ATPase, H+ transporting, lysosomal V0 subunit D1
chr4-148 | chr4 | 47047392 | 47047594 | + | 10.9 | 0.765 | intron (NM_001024136, intron 8 of 14) | intron (NM_001024136, intron 8 of 14) | 22685 | NM_001024136 | 75691 | [NAME] | NM_001024136 | ENSMUSG00000066191 | Anks6 | 2210417J20Rik|Ankrd14|Gm635|SamCystin|Samd6 | ankyrin repeat and sterile alpha motif domain containing 6
chr11-204 | chr11 | 74984904 | 74985106 | + | 10.9 | 0.619 | Intergenic | Intergenic | -1248 | NM_010430 | 15248 | Mm.57250 | NM_001098203 | ENSMUSG00000043099 | Hic1 | AA408311|HIC-1 | hypermethylated in cancer 1
chr17-120 | chr17 | 30912120 | 30912322 | + | 10.9 | 0.65 | [NAME] (NM_013811, intron 68 of 92) | [NAME] (NM_013811, intron 68 of 92) | -126591 | NM_021332 | 14652 | Mm.390969 | NM_021332 | ENSMUSG00000024027 | Glp1r | GLP-1R|GLP1Rc | glucagon-like peptide 1 receptor
chr4-174 | chr4 | 115747395 | 115747597 | + | 10.9 | 0.72 | promoter-TSS (NM_153521) | promoter-TSS (NM_153521) | 179 | NM_025641 | 66576 | Mm.181721 | NM_025641 | ENSMUSG00000063882 | Uqcrh | 2210416J04Rik|2310021J10Rik|2610041P16Rik | ubiquinol-cytochrome c reductase hinge protein
chr12-596 | chr12 | 112311977 | 112312179 | + | 10.9 | 0.941 | intron (NM_198023, intron 2 of 11) | intron (NM_198023, intron 2 of 11) | 34069 | NM_198023 | 217864 | Mm.23808 | NM_198023 | ENSMUSG00000037896 | Rcor1 | 5730409O11|6720480E22Rik|AU042633|D12Wsu95e|mKIAA0071 | REST corepressor 1
chr10-59 | chr10 | 39215088 | 39215290 | + | 10.9 | 0.682 | [NAME] (NM_008054, intron 3 of 13) | [NAME] (NM_008054, intron 3 of 13) | -117551 | NM_134000 | 103213 | Mm.436686 | NM_134000 | ENSMUSG00000019842 | Traf3ip2 | AI429613|Act1 | TRAF3 interacting protein 2
chr16-57 | chr16 | 84879467 | 84879669 | + | 10.9 | 0.765 | Intergenic | Intergenic | -43749 | NM_016755 | 11957 | Mm.353 | NM_016755 | ENSMUSG00000022890 | Atp5j | - | ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F
chr14-78 | chr14 | 79125092 | 79125294 | + | 10.9 | 0.882 | promoter-TSS (NM_001081336) | promoter-TSS (NM_001081336) | -297 | NM_001081336 | 380921 | Mm.411737 | NM_001081336 | ENSMUSG00000034731 | Dgkh | 5930402B05Rik|D130015C16|MGC156865 | [NAME], eta
chr8-435 | chr8 | 24471281 | 24471483 | + | 10.9 | 0.737 | Intergenic | Intergenic | -50592 | NM_013834 | 20377 | Mm.281691 | NM_013834 | ENSMUSG00000031548 | Sfrp1 | 2210415K03Rik|AW011917|AW107218|AW742929|sFRP-1 | secreted frizzled-related protein 1
chr14-71 | chr14 | 65962230 | 65962432 | + | 10.9 | 0.833 | Intergenic | CpG | -15182 | NM_199029 | 380912 | Mm.270087 | NM_199029 | ENSMUSG00000034522 | Zfp395 | BC053701|Gm910|MGC60757 | zinc finger protein 395
chr1-123 | chr1 | 39993347 | 39993549 | + | 10.9 | 0.6 | [NAME] 2 of 30) | [NAME] 2 of 30) | 35690 | NM_008696 | 26921 | Mm.19073 | NM_001252200 | ENSMUSG00000026074 | [NAME] | 9430080K19Rik|AU043147|AU045934|AW046177|HGK|Nik | mitogen-activated protein kinase kinase kinase kinase 4
chr15-40 | chr15 | 34034060 | 34034262 | + | 10.9 | 0.875 | intron (NM_026002, intron 2 of 11) | ORR1A4|LTR|MaLR | 21687 | NM_026002 | 67154 | Mm.130883 | NM_026002 | ENSMUSG00000022255 | [NAME] | 2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric | metadherin
chr7-92 | chr7 | 52466510 | 52466712 | + | 10.9 | 0.684 | [NAME] (NM_015789, intron 2 of 4) | ID_B1|SINE|B4 | 642 | NM_015789 | 50722 | Mm.27287 | NM_015789 | ENSMUSG00000030792 | Dkkl1 | AI414495|SGY|SGY-1|SGY1|Soggy|mSgy | dickkopf-like 1
chr17-129 | chr17 | 35182777 | 35182979 | + | 10.9 | 0.632 | exon (NM_001146215, exon 3 of 25) | exon (NM_001146215, exon 3 of 25) | 673 | NM_013600 | 17687 | Mm.24192 | NM_001146215 | ENSMUSG00000007035 | Msh5 | G7|Mut5 | mutS homolog 5 (E. coli)
chr1-154 | chr1 | 137567040 | 137567242 | + | 10.9 | 0.762 | Intergenic | Intergenic | -58633 | NM_007791 | 13007 | Mm.196484 | NM_007791 | ENSMUSG00000026421 | Csrp1 | AA408841|AA959891|AW545626|CRP1|Csrp | cysteine and glycine-rich protein 1
chr4-191 | chr4 | 119375640 | 119375842 | + | 10.9 | 0.875 | Intergenic | Intergenic | -44191 | NM_008191 | 14916 | Mm.278 | NM_008191 | ENSMUSG00000032978 | Guca2b | AV066530|Gcap2|Ugn | guanylate cyclase activator 2b (retina)
chr12-479 | chr12 | 104017200 | 104017402 | + | 10.9 | 0.591 | Intergenic | Intergenic | 21116 | NM_025666 | 66622 | [NAME] | NM_025666 | ENSMUSG00000041712 | Ubr7 | 5730410I19Rik|AA589405|AW557761 | ubiquitin protein ligase E3 component n-recognin 7 (putative)
chr5-66 | chr5 | 36491670 | 36491872 | + | 10.9 | 0.762 | [NAME] (NM_030889, intron 3 of 26) | [NAME] (NM_030889, intron 3 of 26) | -54899 | NM_175249 | 76943 | Mm.44242 | NM_175249 | ENSMUSG00000043430 | Psapl1 | 2310020A21Rik | prosaposin-like 1
chr5-77 | chr5 | 115760533 | 115760735 | + | 10.9 | 0.706 | Intergenic | RMER17A|LTR|ERVK | -9635 | NM_019682 | 56455 | [NAME] | NM_019682 | ENSMUSG00000009013 | Dynll1 | Dlc8|Dnclc1|Pin | [NAME] chain LC8-type 1
chr15-49 | chr15 | 79850922 | 79851124 | + | 10.9 | 0.778 | Intergenic | Intergenic | -5785 | NM_011057 | 18591 | Mm.144089 | NM_011057 | ENSMUSG00000000489 | Pdgfb | PDGF-B|Sis | platelet derived growth factor, B polypeptide
chr8-469 | chr8 | 86526260 | 86526462 | + | 10.9 | 0.737 | [NAME] (NM_183097, intron 1 of 5) | [NAME] (NM_183097, intron 1 of 5) | 756 | NM_183097 | 73453 | Mm.486026 | NM_183097 | ENSMUSG00000046408 | 1700067K01Rik | - | RIKEN cDNA 1700067K01 gene
chr13-67 | chr13 | 51275766 | 51275968 | + | 10.9 | 0.684 | Intergenic | Intergenic | 9473 | NM_029173 | 75124 | Mm.179243 | NM_029173 | ENSMUSG00000021396 | Nxnl2 | 4930519N16Rik|MGC27636|Rdcvf2 | nucleoredoxin-like 2
chr12-468 | chr12 | 103328401 | 103328603 | + | 10.9 | 0.789 | Intergenic | MTD|LTR|MaLR | -39127 | NM_172152 | 238384 | Mm.312448 | NM_172152 | ENSMUSG00000041771 | Slc24a4 | A930002M03Rik|AW492432|NCKX4 | solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr2-44 | chr2 | 30784140 | 30784342 | + | 10.9 | 0.696 | Intergenic | Intergenic | -24280 | [NAME] | 30934 | Mm.249164 | [NAME] | ENSMUSG00000026848 | Tor1b | 2610016F05Rik|DQ1|torsinB | torsin family 1, member B
chr19-41 | chr19 | 5488816 | 5489018 | + | 10.9 | 0.64 | promoter-TSS (NM_027877) | promoter-TSS (NM_027877) | -581 | NM_027877 | 71711 | Mm.27697 | NM_027877 | ENSMUSG00000024906 | Mus81 | 1200008A18Rik|AI182501|AW045863 | MUS81 endonuclease homolog (yeast)
chr12-428 | chr12 | 92828137 | 92828339 | + | 10.9 | 0.938 | promoter-TSS (NM_031391) | promoter-TSS (NM_031391) | -149 | NM_031391 | 83602 | Mm.432242 | NM_031391 | ENSMUSG00000020962 | Gtf2a1 | 6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1 | general transcription factor II A, 1
chr18-35 | chr18 | 36413525 | 36413727 | + | 10.9 | 0.652 | Intergenic | MTE2b|LTR|MaLR | -27190 | NM_008989 | 19290 | Mm.482241 | NM_008989 | ENSMUSG00000043991 | Pura | CAGER-1|Pur-alpha|ssCRE-BP | purine rich element binding protein A
chr17-115 | chr17 | 30586519 | 30586721 | + | 10.9 | 0.833 | [NAME] (NM_172618, intron 6 of 11) | [NAME] (NM_172618, intron 6 of 11) | -53495 | NR_030688 | 623169 | Mm.440508 | NR_030688 |  | [NAME] | EG623169 | ribosomal protein S17 pseudogene
chr3-45 | chr3 | 93662939 | 93663141 | + | 10.9 | 0.85 | Intergenic | Intergenic | 33098 | NM_207271 | 399674 | Mm.377923 | NM_207271 | ENSMUSG00000058005 | Tdpoz3 | - | TD and POZ domain containing 3
chr7-113 | chr7 | 134247952 | 134248154 | + | 10.9 | 0.667 | Intergenic | B1F|SINE|Alu | 13103 | NM_178901 | 101602 | Mm.284102 | NM_178901 | ENSMUSG00000045165 | AI467606 | - | expressed sequence AI467606
chr8-547 | chr8 | 113592937 | 113593139 | + | 10.9 | 0.632 | TTS (NM_181549) | TTS (NM_181549) | 12570 | NM_181549 | 353287 | Mm.477125 | NM_181549 | ENSMUSG00000033633 | Clec18a | Mrcl | C-type lectin domain family 18, member A
chr14-97 | chr14 | 99897109 | 99897311 | + | 10.9 | 0.5 | Intergenic | Intergenic | 199300 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr11-193 | chr11 | 20075211 | 20075413 | + | 10.9 | 0.842 | Intergenic | Intergenic | -26293 | NM_008996 | 19324 | Mm.271944 | NM_008996 | ENSMUSG00000020149 | Rab1 | Gtbp|Rab-1|Rab1A|Ypt1|mKIAA3012 | RAB1, member RAS oncogene family
chr7-93 | chr7 | 52512747 | 52512949 | + | 10.9 | 0.619 | Intergenic | Intergenic | -18639 | NM_007645 | 12493 | Mm.3689 | NM_007645 | ENSMUSG00000030798 | Cd37 | Tspan26 | CD37 antigen
chr1-122 | chr1 | 38486382 | 38486584 | + | 10.9 | 0.778 | [NAME] (NM_010678, intron 5 of 22) | [NAME] (NM_010678, intron 5 of 22) | 235317 | NM_010678 | 16764 | Mm.336679 | NM_010678 | ENSMUSG00000037138 | Aff3 | 3222402O04Rik|A730046J16|LAF-4|Laf4 | AF4/FMR2 family, member 3
chr8-604 | chr8 | 126939609 | 126939811 | + | 10.9 | 0.765 | [NAME] 6) | [NAME] 6) | 18126 | NM_171824 | 209966 | Mm.234233 | NM_171824 | ENSMUSG00000050751 | Pgbd5 | 2900019M05Rik|AI854313 | piggyBac transposable element derived 5
chr2-58 | chr2 | 102862229 | 102862431 | + | 10.9 | 0.889 | exon (NM_175094, exon 11 of 11) | exon (NM_175094, exon 11 of 11) | 51340 | NM_175094 | 27402 | Mm.315011 | NM_175094 | ENSMUSG00000010914 | Pdhx | AI481367|E3bp|Pdx1 | pyruvate dehydrogenase complex, component X
chr12-558 | chr12 | 109791048 | 109791250 | + | 10.9 | 0.696 | intron (NR_045752, intron 1 of 3) | intron (NR_045752, intron 1 of 3) | -1781 | NM_001163394 | 14026 | Mm.238841 | NM_001163394 | ENSMUSG00000021262 | Evl | AI528774 | Ena-vasodilator stimulated phosphoprotein
chr6-163 | chr6 | 108015428 | 108015630 | + | 10.9 | 0.789 | intron (NM_178391, intron 1 of 1) | intron (NM_178391, intron 1 of 1) | 489 | NM_178391 | 74729 | Mm.56539 | NM_178391 | ENSMUSG00000034639 | [NAME] | 5830404F24Rik|Etet2 | SET domain and mariner transposase fusion gene
chr11-228 | chr11 | 101062234 | 101062436 | + | 10.9 | 0.652 | [NAME] (NM_007970, intron 12 of 20) | [NAME] (NM_007970, intron 12 of 20) | 24904 | NM_016782 | 53321 | Mm.474527 | NM_016782 | ENSMUSG00000017167 | Cntnap1 | AI841080|Caspr|NCP1|Nrxn4|p190|shm | contactin associated protein-like 1
chr9-77 | chr9 | 56921143 | 56921345 | + | 10.9 | 0.684 | [NAME] (NM_001110351, intron 1 of 21) | [NAME] (NM_001110351, intron 1 of 21) | 1397 | NM_001110351 | 20466 | Mm.15755 | NM_001110350 | ENSMUSG00000042557 | Sin3a | AW553200|KIAA4126|Sin3|mKIAA4126|mSin3A | transcriptional regulator, SIN3A (yeast)
chr17-133 | chr17 | 37060377 | 37060579 | + | 10.9 | 0.727 | promoter-TSS (NR_045439) | promoter-TSS (NR_045439) | -259 | NR_045439 | 73286 | Mm.426884 | NR_045439 |  | 1700031A10Rik | - | RIKEN cDNA 1700031A10 gene
chr4-192 | chr4 | 119736030 | 119736232 | + | 10.9 | 0.591 | [NAME] (NM_010657, intron 2 of 8) | L3|LINE|CR1 | -97898 | NM_007902 | 13615 | Mm.284855 | NM_007902 | ENSMUSG00000028635 | Edn2 | VIC | endothelin 2
chr8-407 | chr8 | 9198094 | 9198296 | + | 10.9 | 0.789 | Intergenic | Intergenic | -65907 | NR_045854 | 71249 | Mm.158635 | NR_045854 |  | 4933430N04Rik | - | RIKEN cDNA 4933430N04 gene
chr12-535 | chr12 | 108543177 | 108543379 | + | 10.9 | 0.789 | Intergenic | Intergenic | 430420 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr10-74 | chr10 | 82275449 | 82275651 | + | 10.9 | 0.833 | intron (NR_038042, intron 1 of 2) | intron (NR_038042, intron 1 of 2) | 682 | NR_038042 | 70003 | Mm.48789 | NR_038042 |  | 1700028I16Rik | - | RIKEN cDNA 1700028I16 gene
chr6-159 | chr6 | 52393291 | 52393493 | + | 10.9 | 0.65 | Intergenic | Intergenic | -49053 | NR_046049 | 74304 |  | NR_046049 |  | 1700094M24Rik | - | RIKEN cDNA 1700094M24 gene
chr12-565 | chr12 | 110598578 | 110598780 | + | 10.9 | 0.812 | Intergenic | RLTR20D|LTR|ERVK | -92354 | NR_033813 | 13386 | Mm.157069 | NM_001190703 | ENSMUSG00000040856 | Dlk1 | AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1 | delta-like 1 homolog (Drosophila)
chrX-38 | chrX | 160857922 | 160858124 | + | 10.9 | 0.538 | [NAME] (NM_011081, intron 1 of 5) | [NAME] (NM_011081, intron 1 of 5) | 304 | NM_011081 | 18700 | Mm.401070 | NM_011081 | ENSMUSG00000031381 | Piga | AI194334|Pig-a | phosphatidylinositol glycan anchor biosynthesis, class A
chr6-235 | chr6 | 136279101 | 136279303 | + | 10.9 | 0.778 | exon (NM_001142734, exon 2 of 2) | exon (NM_001142734, exon 2 of 2) | 1645 | NM_001142734 | 668137 | Mm.417085 | NM_001142734 | [NAME] | Gm8994 | B020013A22Rik|EG668137 | predicted gene 8994
chr8-480 | chr8 | 89418445 | 89418647 | + | 10.9 | 0.737 | Intergenic | MER20|DNA|MER1_type | -9389 | NM_030563 | 80750 | Mm.428374 | NM_030563 | ENSMUSG00000031652 | N4bp1 | AI481586|C81621|MGC7607 | NEDD4 binding protein 1
chr8-496 | chr8 | 95012043 | 95012245 | + | 10.9 | 0.7 | Intergenic | LTR16B2|LTR|ERVL | 130449 | NM_018826 | 54352 | Mm.101153 | NM_018826 | ENSMUSG00000031737 | Irx5 | - | Iroquois related homeobox 5 (Drosophila)
chr4-212 | chr4 | 147481703 | 147481905 | + | 10.9 | 0.895 | intron (NM_027426, intron 6 of 6) | intron (NM_027426, intron 6 of 6) | -19631 | NM_009642 | 11610 | Mm.46247 | NM_009642 | ENSMUSG00000029007 | Agtrap | 3300002E14Rik|AT1R|Atrap|D4Wsu124e | angiotensin II, type I receptor-associated protein
chr6-200 | chr6 | 123087905 | 123088107 | + | 10.9 | 0.722 | [NAME], intron 4 of 6) | L1Md_A|LINE|L1 | 14672 | NM_001170333 | 26888 | Mm.47384 | NM_001170332 | ENSMUSG00000030148 | Clec4a2 | Clec4a|Clecsf6|DCIR|Dcir1 | C-type lectin domain family 4, member a2
chr2-43 | chr2 | 30691095 | 30691297 | + | 10.9 | 0.75 | Intergenic | Intergenic | -7376 | NM_133346 | 72323 | Mm.27656 | NM_133346 | ENSMUSG00000039483 | Asb6 | 2510004M11Rik|AA409356 | ankyrin repeat and SOCS box-containing 6
chr16-44 | chr16 | 18438462 | 18438664 | + | 10.9 | 0.667 | [NAME] (NM_013711, intron 5 of 17) | [NAME] (NM_013711, intron 5 of 17) | -11754 | NM_001111062 | 12846 | Mm.100940 | NM_001111062 | ENSMUSG00000000326 | Comt | Comt1|D16Wsu103e|D330014B15Rik | catechol-O-methyltransferase
chr8-544 | chr8 | 113489406 | 113489608 | + | 10.9 | 0.737 | intron (NM_009179, intron 3 of 6) | intron (NM_009179, intron 3 of 6) | 32216 | NM_007916 | 13680 | Mm.287901 | NM_007916 | ENSMUSG00000015023 | Ddx19a | DBP5|Ddx19|Eif4a-rs1 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
chr18-33 | chr18 | 35917384 | 35917586 | + | 10.9 | 0.789 | Intergenic | Intergenic | -13728 | NM_019912 | 56550 | Mm.180052 | NM_019912 | ENSMUSG00000091896 | Ube2d2a | 1500034D03Rik|Ubc2e|Ube2d2|ubc4 | ubiquitin-conjugating enzyme E2D 2A
chr7-84 | chr7 | 30259496 | 30259698 | + | 10.9 | 0.636 | intron (NM_001081028, intron 2 of 22) | intron (NM_001081028, intron 2 of 22) | 30882 | NM_001081028 | 74206 | Mm.447042 | NM_001081028 | ENSMUSG00000030583 | Sipa1l3 | 2610511M17Rik | signal-induced proliferation-associated 1 like 3
chr12-485 | chr12 | 105305873 | 105306075 | + | 10.9 | 0.667 | Intergenic | Intergenic | -10195 | NR_002861 | 321018 | Mm.297023 | NR_002861 |  | Serpina4-ps1 | KALps|Klst | serine (or cysteine) peptidase inhibitor, clade A, member 4, pseudogene 1
chr14-83 | chr14 | 99163517 | 99163719 | + | 10.9 | 0.625 | Intergenic | L1VL4|LINE|L1 | 281737 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr18-27 | chr18 | 13131417 | 13131619 | + | 10.9 | 0.75 | intron (NM_008378, intron 1 of 10) | intron (NM_008378, intron 1 of 10) | 757 | NM_008378 | 16210 | Mm.8154 | NM_008378 | ENSMUSG00000024423 | Impact | E430016J11Rik | imprinted and ancient
chr2-68 | chr2 | 165710118 | 165710320 | + | 10.9 | 0.842 | promoter-TSS (NM_001252584) | promoter-TSS (NM_001252584) | 32 | NM_001252584 | 228880 | Mm.393102 | NM_172270 | ENSMUSG00000039671 | Zmynd8 | 1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|MGC25852|Prkcbp1|RACK7|mKIAA1125 | zinc finger, MYND-type containing 8
chr8-425 | chr8 | 16971758 | 16971960 | + | 10.9 | 0.714 | [NAME] 3 of 69) | Lx2B|LINE|L1 | 563526 | NM_053171 | 94109 | Mm.436988 | NM_053171 | ENSMUSG00000060924 | Csmd1 | B930082H09|KIAA1890|mKIAA1890 | CUB and Sushi multiple domains 1
chr13-73 | chr13 | 66799111 | 66799313 | + | 10.9 | 0.714 | Intergenic | Intergenic | 207074 | NM_026219 | 67530 | Mm.379136 | NM_026219 | ENSMUSG00000021520 | Uqcrb | 2210415M14Rik|MGC107639|MGC35665|QP-C|QPC|UQBC|UQBP|UQPC | ubiquinol-cytochrome c reductase binding protein
chr12-437 | chr12 | 99637322 | 99637524 | + | 10.9 | 0.833 | Intergenic | Intergenic | 130556 | NM_008152 | 14744 | Mm.378924 | NM_008152 | ENSMUSG00000021886 | Gpr65 | [NAME] | G-protein coupled receptor 65
chr9-100 | chr9 | 121280437 | 121280639 | + | 10.9 | 0.778 | intron (NM_175114, intron 1 of 15) | intron (NM_175114, intron 1 of 15) | 4462 | NM_175114 | 67095 | Mm.489616 | NM_175114 | ENSMUSG00000032536 | Trak1 | 2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042 | trafficking protein, [NAME] binding 1
chr14-102 | chr14 | 103517117 | 103517319 | + | 10.9 | 0.824 | [NAME] (NM_207215, intron 83 of 84) | [NAME] (NM_207215, intron 83 of 84) | -18492 | NM_015822 | 50789 | Mm.214746 | NM_015822 | ENSMUSG00000022124 | Fbxl3 | AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm | F-box and leucine-rich repeat protein 3
chr6-217 | chr6 | 126783532 | 126783734 | + | 10.9 | 0.8 | intron (NM_025358, intron 7 of 10) | MTD|LTR|MaLR | 15529 | NM_025358 | 66108 | Mm.29939 | NM_025358 | ENSMUSG00000000399 | Ndufa9 | 1010001N11Rik | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9
chr7-119 | chr7 | 140828485 | 140828687 | + | 10.9 | 0.739 | promoter-TSS (NM_178115) | promoter-TSS (NM_178115) | -772 | [NAME] | 214764 | Mm.174044 | NM_145995 | ENSMUSG00000039990 | 2700050L05Rik | AU022667|AW558805|Edrf1|MGC27934|MGC58090 | RIKEN cDNA 2700050L05 gene
chr10-68 | chr10 | 79498297 | 79498499 | + | 10.9 | 0.789 | TTS (NM_025554) | TTS (NM_025554) | 4006 | NM_025554 | 66420 | Mm.18579 | NM_025554 | ENSMUSG00000004667 | Polr2e | 2410021N14Rik|25kDa|AW208866|RPB5|XAP4 | polymerase (RNA) II (DNA directed) polypeptide E
chr13-58 | chr13 | 22143013 | 22143215 | + | 10.9 | 0.7 | Intergenic | CpG | 8015 | NM_178198 | 319183 | Mm.371766 | NM_178198 | ENSMUSG00000069300 | Hist1h2bj | - | histone cluster 1, H2bj
chr4-154 | chr4 | 62991237 | 62991439 | + | 10.9 | 0.778 | [NAME] (NM_025685, intron 59 of 60) | [NAME] (NM_025685, intron 59 of 60) | -14262 | NM_008768 | 18405 | Mm.4777 | NM_008768 | [NAME] | Orm1 | Agp-1|Agp-2|Orm-1 | orosomucoid 1
chr17-138 | chr17 | 87302989 | 87303191 | + | 10.9 | 0.5 | Intergenic | Intergenic | -13598 | NM_030104 | 78469 | Mm.67234 | NM_030104 | ENSMUSG00000037689 | Tmem247 | 1700090G07Rik | [NAME] 247
chr12-380 | chr12 | 45369825 | 45370027 | + | 10.9 | 0.75 | promoter-TSS (NM_026164) | promoter-TSS (NM_026164) | -215 | NM_026164 | 67452 | Mm.54126 | NM_026164 | ENSMUSG00000036257 | Pnpla8 | 1200006O19Rik|AI467579|Ipla2(gamma)|MGC150064 | patatin-like phospholipase domain containing 8
chr17-137 | chr17 | 57015962 | 57016164 | + | 10.9 | 0.938 | intron (NM_030141, intron 2 of 13) | intron (NM_030141, intron 2 of 13) | 1007 | NM_030141 | 78625 | Mm.160106 | NM_030141 | ENSMUSG00000024209 | 1700061G19Rik | 1700026H02|AI507598 | RIKEN cDNA 1700061G19 gene
chr11-250 | chr11 | 118985135 | 118985337 | + | 10.9 | 0.765 | Intergenic | Intergenic | -37685 | NM_007625 | 12418 | Mm.471550 | NM_007625 | ENSMUSG00000039989 | Cbx4 | MGC143697|MGC143698|MPc2|PC2 | chromobox homolog 4 (Drosophila Pc class)
chr6-227 | chr6 | 128870289 | 128870491 | + | 10.9 | 0.824 | Intergenic | Intergenic | -14009 | NM_027562 | 70809 | Mm.439891 | NM_001168223 | ENSMUSG00000000248 | Clec2g | 4632413B12Rik|Clec2f|Clr-c|Clrc|Clrd|Clrx|Ddv10|MGC144756|Ocilrp1 | C-type lectin domain family 2, member g
chr19-52 | chr19 | 37252453 | 37252655 | + | 10.9 | 0.938 | intron (NR_045329, intron 2 of 2) | intron (NR_045329, intron 2 of 2) | 4221 | NR_045329 | 319931 | Mm.446730 | NR_045329 |  | A330032B11Rik | - | RIKEN cDNA A330032B11 gene
chr6-254 | chr6 | 148920723 | 148920925 | + | 10.9 | 0.824 | Intergenic | MLT1F2|LTR|MaLR | -25870 | NM_019643 | 56306 | Mm.18637 | NM_019643 | ENSMUSG00000039985 | Fam60a | Ppcs1|Pptcs1|Tera | family with sequence similarity 60, member A
chr6-185 | chr6 | 118213963 | 118214165 | + | 10.9 | 0.778 | Intergenic | Intergenic | -15592 | NR_040527 | 73531 | Mm.396245 | NR_040527 |  | 1700069P05Rik | - | RIKEN cDNA 1700069P05 gene
chr11-233 | chr11 | 103754509 | 103754711 | + | 10.9 | 0.833 | [NAME] (NM_008740, intron 8 of 20) | B1F|SINE|Alu | 60760 | NM_008740 | 18195 | Mm.474887 | NM_008740 | ENSMUSG00000034187 | Nsf | AI316878|AU020090|AU067812|SKD2 | N-ethylmaleimide sensitive fusion protein
chr2-48 | chr2 | 32484676 | 32484878 | + | 10.9 | 0.565 | promoter-TSS (NM_021515) | promoter-TSS (NM_021515) | -243 | NM_021515 | 11636 | [NAME] | NM_001198790 | ENSMUSG00000026817 | Ak1 | Ak-1|B430205N08Rik | adenylate kinase 1
chr8-439 | chr8 | 25635967 | 25636169 | + | 10.9 | 0.636 | Intergenic | Intergenic | 50737 | NM_145949 | 209176 | Mm.219580 | NM_145949 | ENSMUSG00000031549 | Ido2 | AI265623|C230043N17Rik|Ido-2|Indol1|MGC31194 | indoleamine 2,3-dioxygenase 2
chr11-209 | chr11 | 80196769 | 80196971 | + | 10.9 | 0.571 | promoter-TSS (NM_001130169) | promoter-TSS (NM_001130169) | 89 | NM_001130171 | 22680 | Mm.489781 | NM_001130169 | ENSMUSG00000017421 | Zfp207 | 8430401D15Rik|Zep | zinc finger protein 207
chr12-420 | chr12 | 88548021 | 88548223 | + | 10.9 | 0.565 | Intergenic | Intergenic | -6943 | NM_001033475 | 382620 | Mm.374912 | NM_001033475 | ENSMUSG00000034111 | Tmed8 | 6430595O10Rik|AI447224|Gm1184|Mem1 | [NAME] emp24 domain containing 8
chr15-52 | chr15 | 89256284 | 89256486 | + | 10.9 | 0.632 | promoter-TSS (NM_009948) | promoter-TSS (NM_009948) | -92 | NM_009948 | 12895 | Mm.227738 | NM_009948 | ENSMUSG00000078937 | Cpt1b | [NAME] | carnitine palmitoyltransferase 1b, muscle
chr12-450 | chr12 | 101156065 | 101156267 | + | 10.9 | 0.636 | intron (NM_028354, intron 13 of 15) | intron (NM_028354, intron 13 of 15) | 33441 | NM_028354 | 104884 | Mm.488658 | NM_028354 | ENSMUSG00000021177 | Tdp1 | 2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1 | tyrosyl-DNA phosphodiesterase 1
chr11-242 | chr11 | 116003700 | 116003902 | + | 10.9 | 0.8 | 3' UTR (NM_172571, exon 31 of 31) | 3' UTR (NM_172571, exon 31 of 31) | -3619 | NM_024177 | 60441 | Mm.29974 | NM_024177 | ENSMUSG00000020775 | Mrpl38 | 1110036N21Rik|4733401F03Rik|MGC41062|MGC8310|MRP-L3|R75240|Rpml3 | mitochondrial ribosomal protein L38
chr19-45 | chr19 | 6999328 | 6999530 | + | 10.9 | 0.636 | TTS (NM_008431) | TTS (NM_008431) | 441 | NM_001039494 | 67077 | Mm.251306 | NM_001039494 | ENSMUSG00000050623 | 1700019N12Rik | A430107B04Rik|MLZ-622 | RIKEN cDNA 1700019N12 gene
chr17-111 | chr17 | 28313382 | 28313584 | + | 10.9 | 0.714 | promoter-TSS (NM_172617) | promoter-TSS (NM_172617) | -880 | NM_172617 | 224656 | Mm.267359 | NM_172617 | ENSMUSG00000024220 | Zfp523 | 2810027J07|BC025615|MGC66570|MGC79196|Znf76 | zinc finger protein 523
chr12-541 | chr12 | 109089985 | 109090187 | + | 10.9 | 0.75 | Intergenic | Intergenic | -116388 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr7-105 | chr7 | 87190957 | 87191159 | + | 10.9 | 0.8 | intron (NM_175433, intron 1 of 4) | intron (NM_175433, intron 1 of 4) | 19944 | NM_175433 | 209225 | Mm.290925 | NM_001145999 | ENSMUSG00000048897 | Zfp710 | 5430400N05Rik|9830165K13|AI324798|Znf710 | zinc finger protein 710
chr11-210 | chr11 | 82728615 | 82728817 | + | 10.9 | 0.875 | [NAME] (NM_178680, intron 5 of 19) | [NAME] (NM_178680, intron 5 of 19) | 3961 | NM_178680 | 217012 | Mm.295205 | NM_178680 | ENSMUSG00000018845 | Unc45b | AA445617|Cmya4|D230041A13Rik|MGC91090|Unc45 | unc-45 homolog B (C. elegans)
chr12-467 | chr12 | 103230786 | 103230988 | + | 10.9 | 0.762 | intron (NM_016856, intron 8 of 14) | intron (NM_016856, intron 8 of 14) | 16703 | NM_016856 | 51786 | Mm.716 | NM_016856 | ENSMUSG00000041781 | Cpsf2 | 100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367 | cleavage and polyadenylation specific factor 2
chr16-46 | chr16 | 20717125 | 20717327 | + | 10.9 | 0.7 | promoter-TSS (NM_145632) | promoter-TSS (NM_145632) | -517 | NM_009900 | 12724 | Mm.177761 | NM_009900 | ENSMUSG00000022843 | Clcn2 | AL118368|ClC-2|Clc2|nmf240 | chloride channel 2
chr7-71 | chr7 | 4894887 | 4895089 | + | 10.9 | 0.875 | intron (NM_173008, intron 13 of 13) | intron (NM_173008, intron 13 of 13) | 17542 | NM_173008 | 269855 | Mm.44190 | NM_173008 | ENSMUSG00000035279 | A430110N23Rik | S5D-SRCRB | RIKEN cDNA A430110N23 gene
chr3-55 | chr3 | 130154367 | 130154569 | + | 10.9 | 0.737 | [NAME] (NM_029838, intron 7 of 37) | L1VL2|LINE|L1 | -165898 | NM_001163587 | 71760 | Mm.29125 | NM_001163587 | ENSMUSG00000019232 | Agxt2l1 | 1300019H02Rik|AI195447 | alanine-glyoxylate aminotransferase 2-like 1
chr3-56 | chr3 | 130624636 | 130624838 | + | 10.9 | 0.773 | Intergenic | Intergenic | -188652 | NM_010703 | 16842 | Mm.255219 | NM_010703 | ENSMUSG00000027985 | Lef1 | 3000002B05|AI451430|Lef-1 | lymphoid enhancer binding factor 1
chr7-76 | chr7 | 19575854 | 19576056 | + | 10.9 | 0.65 | promoter-TSS (NM_145579) | promoter-TSS (NM_145579) | -639 | NM_145579 | 232934 | Mm.440069 | NM_145579 | ENSMUSG00000048481 | Mypop | Myodysa|P42pop | Myb-related transcription factor, partner of profilin
chr9-95 | chr9 | 119103206 | 119103408 | + | 10.9 | 0.636 | [NAME] (NM_133980, intron 8 of 9) | [NAME] (NM_133980, intron 8 of 9) | -3796 | NM_001037749 | 382113 | Mm.335525 | NM_001037749 | ENSMUSG00000070280 | Slc22a14 | Gm1128|MGC118292 | solute carrier family 22 (organic cation transporter), member 14
chr18-45 | chr18 | 80243258 | 80243460 | + | 10.9 | 0.938 | promoter-TSS (NM_053117) | promoter-TSS (NM_053117) | -275 | NM_053117 | 93737 | Mm.24678 | NM_053117 | ENSMUSG00000056214 | Pard6g | 2410049N21Rik|Par6a | par-6 partitioning defective 6 homolog gamma (C. elegans)
chr1-160 | chr1 | 161349512 | 161349714 | + | 10.9 | 0.7 | Intergenic | Intergenic | 79124 | NR_039543 | 100628622 |  | NR_039543 |  | Mir1843b | mmu-mir-1843b | microRNA 1843b
chr5-93 | chr5 | 142927358 | 142927560 | + | 10.9 | 0.652 | exon (NM_199068, exon 5 of 9) | exon (NM_199068, exon 5 of 9) | -12426 | NM_172725 | 231855 | Mm.78250 | NM_172725 | ENSMUSG00000039623 | C330006K01Rik | Ap5z1|KIAA0415|MGC117588 | RIKEN cDNA C330006K01 gene
chr8-543 | chr8 | 113443408 | 113443610 | + | 10.9 | 0.682 | promoter-TSS (NM_009179) | promoter-TSS (NM_009179) | -256 | NM_009179 | 20444 | Mm.200388 | NM_009179 | ENSMUSG00000031749 | St3gal2 | AI429591|AW822065|ST3GalII|Siat5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 2
chr5-73 | chr5 | 114425004 | 114425206 | + | 10.9 | 0.737 | [NAME] (NM_198109, intron 2 of 14) | [NAME] (NM_198109, intron 2 of 14) | 18661 | NM_198109 | 231637 | Mm.389682 | NM_198109 | ENSMUSG00000042121 | Ssh1 | AW551225|Gm1394|Gm1395|SSH-1|mSSH-1L | slingshot homolog 1 (Drosophila)
chr8-452 | chr8 | 69137784 | 69137986 | + | 10.9 | 0.833 | Intergenic | RMER1C|Other|Other | 74108 | NM_016708 | 18168 | Mm.10685 | NM_016708 | ENSMUSG00000044014 | Npy5r | MGC151353|MGC151355|NPY5-R|NPYY5-R|Y5R | neuropeptide Y receptor Y5
chr8-487 | chr8 | 90525246 | 90525448 | + | 10.9 | 0.882 | Intergenic | Intergenic | -41853 | NM_033327 | 94187 | [NAME] | NM_033327 | ENSMUSG00000045333 | Zfp423 | Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12 | zinc finger protein 423
chr8-530 | chr8 | 108665177 | 108665379 | + | 10.9 | 0.737 | Intergenic | Lx8|LINE|L1 | -4404 | NM_176838 | 77411 | Mm.183003 | NM_176838 | ENSMUSG00000084128 | [NAME] | 9530027K23Rik|Rbm35b | epithelial splicing regulatory protein 2
chr12-529 | chr12 | 107926509 | 107926711 | + | 10.9 | 0.667 | [NAME] (NR_015512, intron 7 of 7) | [NAME] (NR_015512, intron 7 of 7) | 27924 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr11-197 | chr11 | 50184909 | 50185111 | + | 10.9 | 0.842 | Intergenic | Intergenic | -6211 | NM_021510 | 59013 | Mm.21740 | NM_021510 | ENSMUSG00000007850 | Hnrnph1 | AI642080|E430005G16Rik|Hnrnph|Hnrph1 | heterogeneous nuclear ribonucleoprotein H1
chr3-42 | chr3 | 89123876 | 89124078 | + | 10.9 | 0.842 | [NAME] (NM_010108, intron 1 of 4) | CpG | 2824 | NM_010108 | 13638 | Mm.331159 | NM_010108 | ENSMUSG00000028039 | Efna3 | AW494418|EFL-2|Ehk1-L|Epl3|LERK-3|MGC129300|MGC129301 | ephrin [NAME]
chr1-151 | chr1 | 134165799 | 134166001 | + | 10.9 | 0.636 | Intergenic | Intergenic | -29303 | NM_144810 | 213417 | Mm.39723 | NM_144810 | ENSMUSG00000042115 | Klhdc8a | [NAME] | kelch domain containing 8A
chr5-74 | chr5 | 114501151 | 114501353 | + | 10.9 | 0.842 | [NAME] (NM_026805, intron 6 of 15) | RMER15|LTR|ERVL | 40137 | NM_026805 | 68666 | Mm.63584 | NM_026805 | ENSMUSG00000042078 | Svop | 1110030H18Rik|AI415691|msvop | SV2 related protein
chr5-62 | chr5 | 30933167 | 30933369 | + | 10.9 | 0.64 | Intergenic | Intergenic | -17044 | NM_175675 | 74919 | Mm.247985 | NM_175675 | ENSMUSG00000029175 | 4930471M23Rik | 5730478O19Rik|P40 | RIKEN cDNA 4930471M23 gene
chr4-209 | chr4 | 135101823 | 135102025 | + | 10.9 | 0.714 | intron (NM_001013756, intron 15 of 15) | intron (NM_001013756, intron 15 of 15) | 27611 | NM_001013756 | 230824 | Mm.331972 | NM_001013756 | ENSMUSG00000037188 | [NAME] | AI561912|Get1|MGC102260|Som|Tfcp2l4|ct | grainyhead-like 3 (Drosophila)
chr4-170 | chr4 | 108874070 | 108874272 | + | 10.9 | 0.833 | [NAME] 22) | [NAME] 22) | 706 | NM_133885 | 100273 | [NAME] | NM_001134791 | ENSMUSG00000028559 | Osbpl9 | 2600011I06Rik|AU015843|MGC30367|MGC38458|Orp-9 | [NAME]like 9
chr9-70 | chr9 | 41733942 | 41734144 | + | 10.9 | 0.833 | Intergenic | Intergenic | 198329 | NM_011436 | 20660 | Mm.121920 | NM_011436 | ENSMUSG00000049313 | Sorl1 | 2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA | sortilin-related receptor, LDLR class A repeats-containing
chr4-186 | chr4 | 118141516 | 118141718 | + | 10.9 | 0.778 | Intergenic | Lx5|LINE|L1 | -11517 | NM_001122949 | 17480 | Mm.4864 | NM_001122949 | ENSMUSG00000006389 | Mpl | [NAME] | myeloproliferative leukemia virus oncogene
chr2-69 | chr2 | 170044734 | 170044936 | + | 10.9 | 0.875 | Intergenic | Intergenic | -76660 | NM_001159683 | 228913 | Mm.22858 | NM_001033299 | ENSMUSG00000052056 | Zfp217 | 4933431C08Rik|AW987152|Gm562|ZABC1|Znf217 | zinc finger protein 217
chr11-219 | chr11 | 96691558 | 96691760 | + | 10.9 | 0.6 | promoter-TSS (NM_001130450) | promoter-TSS (NM_001130450) | -377 | NM_008686 | 18023 | Mm.6743 | NM_001130450 | ENSMUSG00000038615 | [NAME] | AA408798|AW212678|LCR-F1|Lcrf1|NRF1|TCF-11|TCF11 | nuclear factor, erythroid derived 2,-like 1
chr10-81 | chr10 | 126726847 | 126727049 | + | 10.9 | 0.778 | promoter-TSS (NM_007837) | promoter-TSS (NM_007837) | -901 | NM_007837 | 13198 | Mm.110220 | NM_007837 | ENSMUSG00000025408 | Ddit3 | CHOP-10|CHOP10|chop|gadd153 | DNA-damage inducible transcript 3
chr16-41 | chr16 | 13749199 | 13749401 | + | 10.9 | 0.684 | Intergenic | RLTR9B2|LTR|ERVK | -18622 | NM_011987 | 26565 | [NAME] | NM_011987 | ENSMUSG00000022683 | Pla2g10 | PLA2GX|mGXsPLA2|sPLA2-X | phospholipase A2, group X
chr12-377 | chr12 | 30670236 | 30670438 | + | 10.9 | 0.571 | intron (NM_181395, intron 8 of 22) | intron (NM_181395, intron 8 of 22) | 47436 | NM_181395 | 69675 | Mm.251774 | NM_181395 | ENSMUSG00000020674 | Pxdn | 2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230 | peroxidasin homolog (Drosophila)
chr12-570 | chr12 | 111178522 | 111178724 | + | 10.9 | 0.833 | Intergenic | Intergenic | 192535 | NR_037233 | 100499517 |  | NR_037233 |  | Mir3072 | mmu-mir-3072 | microRNA 3072
chr2-52 | chr2 | 78125929 | 78126131 | + | 10.9 | 0.737 | intron (NM_177843, intron 3 of 5) | intron (NM_177843, intron 3 of 5) | 48326 | NM_177843 | 329436 | [NAME] | NM_177843 |  | Gm14461 | A830093M07|OTTMUSG00000016703 | predicted gene 14461
chr5-99 | chr5 | 150138508 | 150138710 | + | 10.9 | 0.778 | Intergenic | Intergenic | 61975 | NM_009663 | 11690 | Mm.19844 | NM_009663 | ENSMUSG00000060063 | Alox5ap | Flap | arachidonate 5-lipoxygenase activating protein
chr10-63 | chr10 | 66239032 | 66239234 | + | 10.9 | 0.875 | Intergenic | Intergenic | 320603 | NM_001204915 | 28193 | Mm.41272 | NM_001204915 | ENSMUSG00000019873 | Reep3 | [NAME] | receptor accessory protein 3
chr6-234 | chr6 | 135994672 | 135994874 | + | 10.9 | 0.882 | intron (NM_008171, intron 3 of 14) | intron (NM_008171, intron 3 of 14) | 128756 | NM_008171 | 14812 | Mm.436649 | NM_008171 | ENSMUSG00000030209 | Grin2b | AW490526|NR2B|Nmdar2b | glutamate receptor, ionotropic, NMDA2B (epsilon 2)
chr14-74 | chr14 | 76485027 | 76485229 | + | 10.9 | 0.7 | TTS (NM_026177) | TTS (NM_026177) | 25494 | NM_026177 | 67467 | Mm.260767 | NM_026177 | ENSMUSG00000022008 | 1200011I18Rik | Kiaa1704 | RIKEN cDNA 1200011I18 gene
chr8-572 | chr8 | 123301491 | 123301693 | + | 10.9 | 0.714 | Intergenic | Intergenic | 41316 | NM_008320 | 15900 | Mm.334861 | NM_008320 | ENSMUSG00000041515 | Irf8 | AI893568|ICSBP|IRF-8|Icsbp1|Myls | interferon regulatory factor 8
chr8-556 | chr8 | 120488806 | 120489008 | + | 10.9 | 0.762 | Intergenic | Intergenic | -163078 | NM_026758 | 68533 | Mm.181836 | NM_026758 | ENSMUSG00000031843 | Mphosph6 | 1110001M01Rik|AA536809|C86426 | M phase phosphoprotein 6
chr8-459 | chr8 | 74795726 | 74795928 | + | 10.9 | 0.889 | Intergenic | ID_B1|SINE|B4 | 31796 | NM_007456 | 11767 | Mm.290086 | NM_007456 | ENSMUSG00000003033 | Ap1m1 | AA408894|AP47|Adtm1A|Cltnm|[m]1A|mu1A | adaptor-related protein complex AP-1, mu subunit 1
chr12-457 | chr12 | 101967367 | 101967569 | + | 10.9 | 0.789 | Intergenic | Intergenic | -4230 | NM_153587 | 73086 | Mm.392855 | NM_153587 | ENSMUSG00000021180 | Rps6ka5 | 3110005L17Rik|6330404E13Rik|AI854034|MGC28385|MSK1|MSPK1|RLPK | ribosomal protein S6 kinase, polypeptide 5
chr14-146 | chr14 | 99405257 | 99405459 | + | 10.2 | 0.842 | Intergenic | Intergenic | 39997 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr8-757 | chr8 | 86534444 | 86534646 | + | 10.2 | 0.812 | TTS (NR_035431) | TTS (NR_035431) | 987 | NR_035431 | 100316677 |  | NR_035431 |  | Mir1199 | Mirn1199|mmu-mir-1199 | microRNA 1199
chr17-239 | chr17 | 81200936 | 81201138 | + | 10.2 | 0.778 | Intergenic | Intergenic | -73604 | NM_001081357 | 225028 | Mm.311948 | NM_001081357 | ENSMUSG00000024242 | Map4k3 | 4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|RAB8IPL1 | mitogen-activated protein kinase kinase kinase kinase 3
chr6-312 | chr6 | 118638710 | 118638912 | + | 10.2 | 0.684 | [NAME] (NM_001256002, intron 14 of 47) | [NAME] (NM_001256002, intron 14 of 47) | -126537 | NM_001081112 | 232339 | Mm.276116 | NM_001081112 | ENSMUSG00000007827 | Ankrd26 | 5730521P14Rik|BC008111|mKIAA1074 | ankyrin repeat domain 26
chr18-76 | chr18 | 66451600 | 66451802 | + | 10.2 | 0.824 | promoter-TSS (NM_178793) | promoter-TSS (NM_178793) | -209 | NM_178793 | 320924 | Mm.442049 | NM_178793 | ENSMUSG00000046318 | Ccbe1 | 4933426F18Rik|9430093N24Rik|KIAA1983|MGC118667|mKIAA1983 | collagen and calcium binding EGF domains 1
chr3-105 | chr3 | 128919839 | 128920041 | + | 10.2 | 0.833 | intron (NM_001042502, intron 2 of 2) | intron (NM_001042502, intron 2 of 2) | 3085 | NM_001042502 | 18741 | Mm.246804 | NM_001042502 | ENSMUSG00000028023 | Pitx2 | 9430085M16Rik|Brx1|Brx1a|Brx1b|Munc30|Otlx2|Pitx2a|Pitx2b|Pitx2c|Pitx2cbeta|Ptx2|Rieg | paired-like homeodomain transcription factor 2
chr5-131 | chr5 | 98777053 | 98777255 | + | 10.2 | 0.737 | [NAME], intron 2 of 5) | MLT1E3|LTR|MaLR | 18831 | NM_001024614 | 75784 | Mm.443240 | NM_001024614 | ENSMUSG00000057816 | 1700007G11Rik | 4930428O21Rik | RIKEN cDNA 1700007G11 gene
chr10-92 | chr10 | 41285482 | 41285684 | + | 10.2 | 0.75 | intron (NM_001177571, intron 7 of 17) | intron (NM_001177571, intron 7 of 17) | -2239 | NR_045341 | 70538 | Mm.399807 | NR_045341 |  | 5730435O14Rik | - | RIKEN cDNA 5730435O14 gene
chr7-136 | chr7 | 25675088 | 25675290 | + | 10.2 | 0.875 | TTS (NM_023133) | TTS (NM_023133) | 5456 | NM_023133 | 20085 | Mm.445088 | NM_023133 | ENSMUSG00000040952 | Rps19 | Dsk3|MGC107694 | ribosomal protein S19
chr16-100 | chr16 | 92645224 | 92645426 | + | 10.2 | 0.688 | intron (NM_001111023, intron 3 of 5) | intron (NM_001111023, intron 3 of 5) | 52248 | NM_009821 | 12394 | Mm.470227 | NM_001111021 | ENSMUSG00000022952 | Runx1 | AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b | runt related transcription factor 1
chr4-286 | chr4 | 108846717 | 108846919 | + | 10.2 | 0.75 | [NAME] 22) | [NAME] 22) | 28059 | NM_133885 | 100273 | [NAME] | NM_001134791 | ENSMUSG00000028559 | Osbpl9 | 2600011I06Rik|AU015843|MGC30367|MGC38458|Orp-9 | [NAME]like 9
chr2-80 | chr2 | 23012110 | 23012312 | + | 10.2 | 0.875 | promoter-TSS (NM_025979) | promoter-TSS (NM_025979) | 186 | NM_013771 | 27377 | Mm.23335 | NM_013771 | ENSMUSG00000026775 | Yme1l1 | FtsH1|Ftsh | YME1-like 1 (S. cerevisiae)
[NAME] | chr14 | 26205915 | 26206117 | + | 10.2 | 0.571 | Intergenic | Intergenic | -72655 | NM_183208 | 328365 | Mm.489608 | NM_001033402 | ENSMUSG00000007817 | Zmiz1 | BC065120|E330020C23|ENSMUSG00000072684|Gm10397|I920194n01|Rai17|Zimp10 | zinc finger, MIZ-type containing 1
chr16-81 | chr16 | 19690153 | 19690355 | + | 10.2 | 0.867 | [NAME] (NM_177356, intron 3 of 5) | L1_Mus3|LINE|L1 | 16204 | NM_177356 | 239739 | Mm.295252 | NM_177356 | ENSMUSG00000041247 | Lamp3 | 1200002D17Rik|Cd208|DC-LAMP|DCLAMP|LAMP|TSC403 | lysosomal-associated membrane protein 3
chr4-367 | chr4 | 135122725 | 135122927 | + | 10.2 | 0.789 | intron (NM_001013756, intron 1 of 15) | MIRc|SINE|MIR | 6709 | NM_001013756 | 230824 | Mm.331972 | NM_001013756 | ENSMUSG00000037188 | [NAME] | AI561912|Get1|MGC102260|Som|Tfcp2l4|ct | grainyhead-like 3 (Drosophila)
chr8-615 | chr8 | 6959899 | 6960101 | + | 10.2 | 0.875 | Intergenic | Lx5|LINE|L1 | 1700773 | NM_010111 | 13642 | Mm.209813 | NM_010111 | ENSMUSG00000001300 | Efnb2 | ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 | ephrin B2
chr11-299 | chr11 | 75726899 | 75727101 | + | 10.2 | 0.684 | Intergenic | Intergenic | -2472 | NM_029548 | 380714 | Mm.425697 | NM_029548 | ENSMUSG00000020847 | [NAME] | 6530413F01Rik|AI551877|Gm1753|Noc2 | rabphilin 3A-like (without C2 domains)
chr8-733 | chr8 | 80007490 | 80007692 | + | 10.2 | 0.824 | [NAME] (NM_030113, intron 1 of 22) | [NAME] (NM_030113, intron 1 of 22) | -33364 | NR_028125 | 70345 | Mm.411813 | NR_028125 |  | 0610038B21Rik | - | RIKEN cDNA 0610038B21 gene
chrX-48 | chrX | 163099805 | 163100007 | + | 10.2 | 0.875 | promoter-TSS (NR_046015) | promoter-TSS (NR_046015) | -51 | NR_046015 | 382255 | Mm.336320 | NR_046015 |  | Gm1720 | - | predicted gene 1720
chr12-660 | chr12 | 52362768 | 52362970 | + | 10.2 | 0.706 | Intergenic | Lx2B|LINE|L1 | -86348 | NM_001167964 | 217558 | Mm.253264 | NM_001015099 | ENSMUSG00000035293 | G2e3 | 6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333 | G2/M-phase specific E3 ubiquitin ligase
[NAME] | chr11 | 114692139 | 114692341 | + | 10.2 | 0.833 | Intergenic | Intergenic | -20606 | NM_001110337 | 70355 | Mm.242413 | NM_001110337 | ENSMUSG00000051043 | Gprc5c | 1110028I06Rik|3200002M13Rik|MGC11976|MGC6786|Raig3 | G protein-coupled receptor, family C, group 5, member C
chr9-158 | chr9 | 108410152 | 108410354 | + | 10.2 | 0.789 | promoter-TSS (NM_133794) | promoter-TSS (NM_133794) | -83 | NM_133794 | 97541 | Mm.272427 | NM_001168270 | ENSMUSG00000032604 | Qars | 1110018N24Rik|1200016L19Rik|C80286|GLNRS|MGC105238 | glutaminyl-tRNA synthetase
chr17-214 | chr17 | 34267615 | 34267817 | + | 10.2 | 0.588 | Intergenic | Intergenic | -4900 | NM_010386 | 14998 | Mm.16373 | NM_010386 | ENSMUSG00000037649 | H2-DMa | H-2Ma|H2-Ma | histocompatibility 2, class II, locus DMa
chrX-47 | chrX | 158364373 | 158364575 | + | 10.2 | 0.632 | [NAME] (NM_001081052, intron 1 of 7) | [NAME] (NM_001081052, intron 1 of 7) | 208989 | NM_198409 | 24004 | Mm.328503 | NM_001103367 | ENSMUSG00000043518 | Rai2 | 3f8 | retinoic acid induced 2
chr5-105 | chr5 | 22066516 | 22066718 | + | 10.2 | 0.867 | Intergenic | Intergenic | -10468 | NM_011959 | 26429 | Mm.469664 | NM_011959 | ENSMUSG00000029012 | Orc5 | AL033327|MmORC5|Orc5l | origin recognition complex, subunit 5
chr1-232 | chr1 | 184040833 | 184041035 | + | 10.2 | 0.706 | Intergenic | Intergenic | -13934 | NM_012058 | 27058 | Mm.303071 | NM_012058 | ENSMUSG00000026511 | Srp9 | 9kDa | signal recognition particle 9
chr15-91 | chr15 | 79776520 | 79776722 | + | 10.2 | 0.7 | Intergenic | Intergenic | -13545 | NM_144811 | 52609 | Mm.323442 | NM_144811 | ENSMUSG00000053411 | Cbx7 | 1600014J01Rik|AI851678|D15Ertd417e | chromobox homolog 7
chr5-120 | chr5 | 53917122 | 53917324 | + | 10.2 | 0.706 | Intergenic | Intergenic | -29795 | NM_001080928 | 19664 | Mm.488709 | NM_001080927 | ENSMUSG00000039191 | Rbpj | AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBPjk|Rbpsuh | recombination signal binding protein for immunoglobulin kappa J region
chr7-202 | chr7 | 149671814 | 149672016 | + | 10.2 | 0.75 | [NAME] (NM_019391, intron 2 of 10) | [NAME] (NM_019391, intron 2 of 10) | -12826 | NM_001163667 | 21957 | Mm.389992 | NM_001163664 | ENSMUSG00000061723 | Tnnt3 | fTnT | troponin T3, skeletal, fast
chr1-206 | chr1 | 100420722 | 100420924 | + | 10.2 | 0.938 | Intergenic | Lx2|LINE|L1 | 103122 | NM_027584 | 70866 | Mm.389164 | NM_001164233 | ENSMUSG00000026336 | Slco6d1 | 4921511I05Rik|MGC132957|MGC132958 | solute carrier organic anion transporter family, member 6d1
chr8-1004 | chr8 | 127893864 | 127894066 | + | 10.2 | 0.667 | Intergenic | Intergenic | 122645 | NM_001081337 | 244668 | Mm.271668 | NM_001081337 | ENSMUSG00000001995 | Sipa1l2 | BC058408|mKIAA1389 | signal-induced proliferation-associated 1 like 2
chr8-687 | chr8 | 22912373 | 22912575 | + | 10.2 | 0.875 | Intergenic | Intergenic | -21537 | NM_199067 | 387334 | Mm.346928 | NM_199067 | ENSMUSG00000058568 | Defb50 | AY387658|BD-50|Defb37|Pbd1|mBD-50 | [NAME] beta 50
chr6-423 | chr6 | 137110051 | 137110253 | + | 10.2 | 0.737 | intron (NM_001164212, intron 2 of 4) | (CA)n|Simple_repeat|Simple_repeat | 8087 | NM_001164214 | 232441 | Mm.46233 | NM_001164212 | ENSMUSG00000030222 | [NAME] | - | RAS-like, estrogen-regulated, growth-inhibitor
chr8-986 | chr8 | 126339625 | 126339827 | + | 10.2 | 0.778 | [NAME] (NM_009003, intron 1 of 7) | [NAME] (NM_009003, intron 1 of 7) | 9830 | NM_009003 | 19341 | Mm.9221 | NM_009003 | ENSMUSG00000019478 | Rab4a | AI848268|Rab4 | RAB4A, member RAS oncogene family
chr9-129 | chr9 | 47677636 | 47677838 | + | 10.2 | 0.833 | Intergenic | Intergenic | -51446 | NR_046048 | 100038460 | Mm.447649 | NR_046048 |  | Gm10677 | ENSMUSG00000074363 | predicted gene 10677
chr10-101 | chr10 | 60161105 | 60161307 | + | 10.2 | 0.789 | Intergenic | Intergenic | -1968 | NM_023370 | 22295 | Mm.440327 | NM_001252635 | ENSMUSG00000012819 | Cdh23 | 4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v | cadherin 23 (otocadherin)
chr8-811 | chr8 | 94946308 | 94946510 | + | 10.2 | 0.706 | Intergenic | Intergenic | 64714 | NM_018826 | 54352 | Mm.101153 | NM_018826 | ENSMUSG00000031737 | Irx5 | - | Iroquois related homeobox 5 (Drosophila)
chr18-58 | chr18 | 32089353 | 32089555 | + | 10.2 | 0.765 | Intergenic | Intergenic | -1707 | NM_144862 | 225341 | Mm.24551 | NM_144862 | ENSMUSG00000024395 | Lims2 | PINCH2 | LIM and senescent cell antigen like domains 2
chr1-192 | chr1 | 88369176 | 88369378 | + | 10.2 | 0.667 | Intergenic | Intergenic | 46373 | NM_027966 | 71863 | Mm.179627 | NM_027966 |  | 1700019O17Rik | MGC118337 | RIKEN cDNA 1700019O17 gene
chr5-127 | chr5 | 77740751 | 77740953 | + | 10.2 | 0.938 | [NAME] (NM_153798, intron 1 of 24) | [NAME] (NM_153798, intron 1 of 24) | 1343 | NM_153798 | 231329 | Mm.273217 | NM_153798 | ENSMUSG00000029250 | Polr2b | MGC47046|Pol2rb|Rpb140|Rpb2 | polymerase (RNA) II (DNA directed) polypeptide B
chr15-70 | chr15 | 64753393 | 64753595 | + | 10.2 | 0.625 | 5' UTR (NM_009623, exon 1 of 18) | 5' UTR (NM_009623, exon 1 of 18) | 364 | NM_009623 | 11514 | Mm.1425 | NM_009623 | [NAME] | Adcy8 | AC8|AW060868 | adenylate cyclase 8
chr9-126 | chr9 | 45940983 | 45941185 | + | 10.2 | 0.647 | [NAME] (NM_027498, intron 3 of 24) | [NAME] (NM_027498, intron 3 of 24) | -95629 | NM_009692 | 11806 | Mm.26743 | NM_009692 | ENSMUSG00000032083 | Apoa1 | Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|MGC102525|Sep-1|Sep-2|Sep2 | apolipoprotein A-I
chr1-204 | chr1 | 94830935 | 94831137 | + | 10.2 | 0.682 | promoter-TSS (NM_011796) | promoter-TSS (NM_011796) | 51 | NM_011796 | 23830 | Mm.442236 | NM_011796 | ENSMUSG00000026270 | Capn10 | AW049679|Capn8|mKIAA1845 | calpain 10
chr16-86 | chr16 | 30597243 | 30597445 | + | 10.2 | 0.65 | Intergenic | Intergenic | -2465 | NM_177632 | 224093 | Mm.28244 | NM_177632 | ENSMUSG00000046546 | Fam43a | Tuf1 | family with sequence similarity 43, member A
[NAME] | chr11 | 102156447 | 102156649 | + | 10.2 | 0.684 | [NAME] (NM_001098837, intron 1 of 12) | [NAME] (NM_001098837, intron 1 of 12) | 1395 | NM_001098836 | 217218 | Mm.390381 | NM_001098836 | ENSMUSG00000059995 | Atxn7l3 | E030022H21Rik|MGC161359 | ataxin 7-like 3
chr19-98 | chr19 | 23971504 | 23971706 | + | 10.2 | 0.8 | [NAME] (NM_177034, intron 2 of 12) | [NAME] (NM_177034, intron 2 of 12) | 133904 | NM_001114174 | 381217 | Mm.426078 | NM_001114174 | ENSMUSG00000071604 | [NAME] | AI414343|AI666772|Gm967 | family with sequence similarity 189, member A2
chr1-228 | chr1 | 179908023 | 179908225 | + | 10.2 | 0.824 | Intergenic | Intergenic | -13442 | NM_001034899 | 545391 | Mm.442974 | NM_001034899 | ENSMUSG00000091476 | Gm16432 | EG545391|EG666250 | predicted gene 16432
chr11-388 | chr11 | 121231704 | 121231906 | + | 10.2 | 0.867 | [NAME], intron 1 of 5) | [NAME], intron 1 of 5) | -16044 | NM_025793 | 66840 | Mm.103986 | NM_025793 | ENSMUSG00000025173 | Wdr45l | 0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3 | Wdr45 like
chr14-159 | chr14 | 99997031 | 99997233 | + | 10.2 | 0.765 | Intergenic | Intergenic | 299222 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr6-322 | chr6 | 120202141 | 120202343 | + | 10.2 | 0.7 | [NAME] (NM_198884, intron 1 of 19) | [NAME] (NM_198884, intron 1 of 19) | 42335 | NM_198884 | 330406 | Mm.321840 | NM_198884 | ENSMUSG00000041372 | B4galnt3 | AB114826|B4GalNAcT3|C330047A21 | beta-1,4-N-acetyl-galactosaminyl transferase 3
chr4-390 | chr4 | 154594439 | 154594641 | + | 10.2 | 0.733 | [NAME] (NM_011385, intron 1 of 6) | [NAME] (NM_011385, intron 1 of 6) | 2104 | NM_011385 | 20481 | Mm.28520 | NM_011385 | ENSMUSG00000029050 | Ski | 2310012I02Rik|2610001A11Rik|AA062172|AA589460|BC004088|MGC8300 | ski sarcoma viral oncogene homolog (avian)
chr12-747 | chr12 | 101269995 | 101270197 | + | 10.2 | 0.75 | intron (NM_146037, intron 2 of 2) | intron (NM_146037, intron 2 of 2) | 67387 | NM_146037 | 217826 | Mm.312335 | NM_001164426 | ENSMUSG00000045404 | Kcnk13 | BB085247|F730021E22Rik|Gm1570|Gm1685|MGC31053 | potassium channel, subfamily K, member 13
chr6-259 | chr6 | 28899309 | 28899511 | + | 10.2 | 0.714 | Intergenic | Intergenic | -73209 | NR_029567 | 387237 |  | NR_029567 |  | Mir129-1 | Mirn129-1|Mirn129b|miR-129b | microRNA 129-1
chr15-68 | chr15 | 57838114 | 57838316 | + | 10.2 | 0.867 | [NAME] (NM_173862, intron 3 of 3) | ORR1E|LTR|MaLR | 20757 | NM_173862 | 239463 | Mm.221241 | NM_173862 | ENSMUSG00000051225 | Fam83a | MGC40696 | family with sequence similarity 83, member A
chr17-147 | chr17 | 23883469 | 23883671 | + | 10.2 | 0.647 | promoter-TSS (NM_028416) | promoter-TSS (NM_028416) | -774 | NM_028416 | 73016 | Mm.221319 | NM_028416 | ENSMUSG00000040680 | Kremen2 | 2900054E04Rik|Krm2 | [NAME] containing transmembrane protein 2
chr12-866 | chr12 | 108246035 | 108246237 | + | 10.2 | 0.778 | Intergenic | Intergenic | -291602 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr10-132 | chr10 | 82477501 | 82477703 | + | 10.2 | 0.824 | [NAME] 2) | [NAME] 2) | 29360 | NM_021439 | 58250 | Mm.360747 | NM_021439 | [NAME] | Chst11 | 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s | carbohydrate sulfotransferase 11
chr5-115 | chr5 | 33871273 | 33871475 | + | 10.2 | 0.789 | Intergenic | Intergenic | 100910 | NM_178390 | 74504 | Mm.294695 | NM_178390 | ENSMUSG00000037339 | [NAME] | 2410018C17Rik|5430419M09Rik|Dntnp|KIAA4017 | family with sequence similarity 53, member A
chr3-75 | chr3 | 88411304 | 88411506 | + | 10.2 | 0.7 | Intergenic | Intergenic | -8724 | NM_001198911 | 16800 | Mm.482396 | NM_001198911 | ENSMUSG00000028059 | Arhgef2 | AA408978|GEF|GEF-H1|GEFH1|LFP40|Lbcl1|Lfc|P40|mKIAA0651 | rho/rac guanine nucleotide exchange factor (GEF) 2
chr15-125 | chr15 | 102348233 | 102348435 | + | 10.2 | 0.682 | promoter-TSS (NM_009319) | promoter-TSS (NM_009319) | -289 | NM_001253795 | 21357 | Mm.349088 | NM_001253795 | ENSMUSG00000023051 | Tarbp2 | Prbp | TAR (HIV) [NAME] binding protein 2
chr15-105 | chr15 | 86548686 | 86548888 | + | 10.2 | 0.6 | Intergenic | Intergenic | 503898 | NM_145476 | 223754 | Mm.28904 | NM_145476 | ENSMUSG00000051864 | Tbc1d22a | BC023106|D15Ertd781e|MGC28337 | TBC1 domain family, member 22a
chr17-221 | chr17 | 41071894 | 41072096 | + | 10.2 | 0.824 | promoter-TSS (NM_031863) | promoter-TSS (NM_031863) | 361 | NM_008650 | 17850 | Mm.259884 | NM_008650 | ENSMUSG00000023921 | Mut | D230010K02Rik|Mcm | methylmalonyl-Coenzyme A mutase
chr8-680 | chr8 | 17073855 | 17074057 | + | 10.2 | 0.812 | [NAME] intron 2 of 69) | [NAME] intron 2 of 69) | 461429 | NM_053171 | 94109 | Mm.436988 | NM_053171 | ENSMUSG00000060924 | Csmd1 | B930082H09|KIAA1890|mKIAA1890 | CUB and Sushi multiple domains 1
chr5-123 | chr5 | 66379484 | 66379686 | + | 10.2 | 0.762 | non-coding (NR_027961, exon 7 of 7) | non-coding (NR_027961, exon 7 of 7) | 15939 | NR_027961 | 231253 | Mm.436542 | NR_027961 |  | 9130230L23Rik | - | RIKEN cDNA 9130230L23 gene
chr17-206 | chr17 | 31519046 | 31519248 | + | 10.2 | 0.556 | Intergenic | MLT2B1|LTR|ERVL | -4032 | NM_008804 | 18585 | Mm.10812 | NM_001163748 | ENSMUSG00000041119 | Pde9a | PDE9A1 | phosphodiesterase 9A
chr8-804 | chr8 | 92871322 | 92871524 | + | 10.2 | 0.875 | [NAME] (NM_172913, intron 1 of 6) | [NAME] (NM_172913, intron 1 of 6) | 728 | NM_172913 | 244579 | Mm.302755 | NM_172913 | ENSMUSG00000043668 | Tox3 | 500-9|BC052044|C230068E13|CAGF9|Tnrc9 | TOX high mobility group box family member 3
chr2-114 | chr2 | 93285643 | 93285845 | + | 10.2 | 0.722 | [NAME] (NM_001136055, intron 1 of 9) | MIRb|SINE|MIR | -7232 | NR_040532 | 100038525 | Mm.440596 | NR_040532 |  | Gm10804 | ENSMUSG00000075025 | predicted gene 10804
chr4-255 | chr4 | 104474343 | 104474545 | + | 10.2 | 0.714 | [NAME] (NM_133882, intron 11 of 11) | RLTR9A|LTR|ERVK | 35522 | NM_133882 | 110382 | Mm.87072 | NM_133882 | ENSMUSG00000029656 | C8b | 4930439B20Rik|AI595927 | complement component 8, beta polypeptide
chr6-303 | chr6 | 117641918 | 117642120 | + | 10.2 | 0.8 | [NAME] (NR_045731, intron 3 of 3) | MTC|LTR|MaLR | 59768 | NR_045731 | 72263 | Mm.443289 | NR_045731 |  | 1700030F04Rik | - | RIKEN cDNA 1700030F04 gene
chr15-86 | chr15 | 78411741 | 78411943 | + | 10.2 | 0.778 | Intergenic | Intergenic | -8629 | NM_009008 | 19354 | Mm.1972 | NM_009008 | ENSMUSG00000033220 | Rac2 | AI323801|AI452260 | RAS-related C3 botulinum substrate 2
chr8-740 | chr8 | 81059796 | 81059998 | + | 10.2 | 0.706 | intron (NM_029736, intron 4 of 11) | intron (NM_029736, intron 4 of 11) | 26663 | NM_029736 | 76775 | Mm.334631 | NM_001009980 | ENSMUSG00000031684 | Slc10a7 | 2410193C02Rik|P7 | solute carrier family 10 (sodium/bile acid cotransporter family), member 7
chr4-323 | chr4 | 117970558 | 117970760 | + | 10.2 | 0.684 | Intergenic | Intergenic | -6657 | NM_011213 | 19268 | Mm.29855 | NM_011213 | ENSMUSG00000033295 | Ptprf | AA591035|LAR|LARS|RPTP-LAR | protein tyrosine phosphatase, receptor type, F
chr1-170 | chr1 | 23955629 | 23955831 | + | 10.2 | 0.867 | Intergenic | Intergenic | -26602 | NM_028534 | 98366 | Mm.329963 | NM_028534 | ENSMUSG00000026155 | Smap1 | 1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175 | stromal membrane-associated protein 1
chr17-159 | chr17 | 27351384 | 27351586 | + | 10.2 | 0.682 | Intergenic | L2|LINE|L2 | -10102 | NM_146075 | 224640 | Mm.29689 | NM_146075 | ENSMUSG00000044857 | [NAME] | BC026588|Lem2|MGC37253|NET25 | LEM domain containing 2
chr6-452 | chr6 | 144877286 | 144877488 | + | 10.2 | 0.737 | Intergenic | B4A|SINE|B4 | 119945 | NM_001024468 | 12035 | Mm.4606 | NM_001024468 | ENSMUSG00000030268 | [NAME] | BCATc|Eca39 | branched chain aminotransferase 1, cytosolic
chr12-915 | chr12 | 110620118 | 110620320 | + | 10.2 | 0.875 | Intergenic | RMER19C|LTR|ERVK | -70814 | NR_033813 | 13386 | Mm.157069 | NM_001190703 | ENSMUSG00000040856 | Dlk1 | AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1 | delta-like 1 homolog (Drosophila)
chr14-124 | chr14 | 62217505 | 62217707 | + | 10.2 | 0.882 | promoter-TSS (NM_023233) | promoter-TSS (NM_023233) | 543 | NM_001164220 | 66597 | Mm.23959 | NM_001164220 | ENSMUSG00000035235 | Trim13 | 3110001L12Rik|CAR|LEU5|RNF77|Rfp2 | tripartite motif-containing 13
chr8-823 | chr8 | 97384464 | 97384666 | + | 10.2 | 0.632 | intron (NM_009090, intron 4 of 8) | intron (NM_009090, intron 4 of 8) | 3215 | NM_009090 | 20021 | Mm.339593 | NM_009090 | ENSMUSG00000031783 | Polr2c | 33kDa|MGC118242|RPB3|Rpo2-3|mRBP31 | polymerase (RNA) II (DNA directed) polypeptide C
chr2-81 | chr2 | 25258008 | 25258210 | + | 10.2 | 0.65 | promoter-TSS (NM_008721) | promoter-TSS (NM_008721) | -494 | NM_008721 | 18146 | Mm.1131 | NM_008721 | ENSMUSG00000015094 | Npdc1 | AI314472|NPDC-1 | neural proliferation, differentiation and control gene 1
chr2-94 | chr2 | 31230171 | 31230373 | + | 10.2 | 0.737 | Intergenic | Intergenic | -95518 | NM_007494 | 11898 | Mm.3217 | NM_007494 | ENSMUSG00000076441 | Ass1 | AA408052|ASS|Ass-1|MGC103151|fold | argininosuccinate synthetase 1
chr8-648 | chr8 | 12638312 | 12638514 | + | 10.2 | 0.765 | intron (NM_198031, intron 14 of 21) | intron (NM_198031, intron 14 of 21) | 33687 | NM_198031 | 259279 | [NAME] | NM_198031 | ENSMUSG00000000759 | Tubgcp3 | GCP3|Spc98p | tubulin, gamma complex associated protein 3
chr3-86 | chr3 | 96487271 | 96487473 | + | 10.2 | 0.542 | exon (NM_001081139, exon 10 of 13) | exon (NM_001081139, exon 10 of 13) | -12926 | NM_146135 | 229615 | [NAME] | NM_001165949 | ENSMUSG00000028101 | Pias3 | MGC27936|Pias3l | protein inhibitor of activated STAT 3
chr17-182 | chr17 | 29395124 | 29395326 | + | 10.2 | 0.65 | [NAME] (NM_026845, intron 2 of 3) | L2a|LINE|L2 | 5691 | NM_026845 | 68816 | Mm.328928 | NM_026845 | ENSMUSG00000024007 | Ppil1 | 1110060O10Rik|AI327391|Cypl1 | peptidylprolyl isomerase (cyclophilin)-like 1
chr9-104 | chr9 | 14832583 | 14832785 | + | 10.2 | 0.75 | [NAME] 4) | [NAME] 4) | 17238 | NM_019482 | 55991 | Mm.142253 | NM_019482 | ENSMUSG00000031934 | Panx1 | AI847747 | pannexin 1
chr4-240 | chr4 | 78470642 | 78470844 | + | 10.2 | 0.933 | Intergenic | L1VL4|LINE|L1 | -2009391 | NM_031202 | 22178 | Mm.30438 | NM_031202 | ENSMUSG00000005994 | Tyrp1 | TRP-1|TRP1|Tyrp|b|brown|isa | tyrosinase-related protein 1
chr2-119 | chr2 | 115515959 | 115516161 | + | 10.2 | 0.938 | intron (NM_001145898, intron 10 of 10) | [NAME] | 51599 | NR_035476 | 100316703 |  | NR_035476 |  | Mir1951 | mmu-mir-1951 | microRNA 1951
chr1-175 | chr1 | 36576758 | 36576960 | + | 10.2 | 0.789 | [NAME] (NM_001039551, intron 2 of 8) | [NAME] (NM_001039551, intron 2 of 8) | 8138 | NM_053186 | 94218 | Mm.256323 | [NAME] | ENSMUSG00000001138 | Cnnm3 | Acdp3|Clp3|mACDP3 | cyclin M3
chr6-394 | chr6 | 128212517 | 128212719 | + | 10.2 | 0.619 | [NAME] (NM_011567, intron 2 of 11) | B4A|SINE|B4 | 38213 | NM_001080979 | 21679 | Mm.14774 | NM_001080979 | ENSMUSG00000030353 | Tead4 | ETFR-2|Etfr2|FR-19|TEAD-4|TEF-3|Tcf13r1|Tef3|Tefr|Tefr1|Tefr1a | TEA domain family member 4
chr1-182 | chr1 | 84439762 | 84439964 | + | 10.2 | 0.812 | [NAME] (NM_152915, intron 8 of 12) | [NAME] (NM_152915, intron 8 of 12) | -158643 | NM_001003948 | 98496 | Mm.187470 | NM_001003948 | ENSMUSG00000045658 | Pid1 | 5033414K04Rik|MGC90850|NYGGF4 | phosphotyrosine interaction domain containing 1
chr17-176 | chr17 | 28730032 | 28730234 | + | 10.2 | 0.778 | [NAME] (NM_016795, intron 13 of 15) | [NAME] (NM_016795, intron 13 of 15) | 17469 | NM_026571 | 328789 | Mm.284760 | NM_026571 | ENSMUSG00000062252 | Lhfpl5 | 9330179O15Rik|MGC117706|Tmhs|hscy | lipoma HMGIC fusion partner-like 5
chr8-904 | chr8 | 121404595 | 121404797 | + | 10.2 | 0.778 | [NAME] (NM_019707, intron 5 of 13) | [NAME] (NM_019707, intron 5 of 13) | -463742 | NM_024219 | 68196 | Mm.358714 | NM_024219 | ENSMUSG00000031839 | Hsbp1 | 0610007A03Rik|AA408769|Hsp25 | heat shock factor binding protein 1
chr8-790 | chr8 | 90764386 | 90764588 | + | 10.2 | 0.824 | [NAME] (NM_001164497, intron 2 of 12) | [NAME] (NM_001164497, intron 2 of 12) | -31815 | NM_007406 | 11513 | Mm.288206 | NM_001037723 | ENSMUSG00000031659 | Adcy7 | AA407758|MGC141539 | adenylate cyclase 7
[NAME] | chr11 | 68972272 | 68972474 | + | 10.2 | 0.706 | [NAME] (NM_009659, intron 2 of 14) | [NAME] (NM_009659, intron 2 of 14) | 1799 | NM_009659 | 11686 | Mm.340329 | NM_009659 | ENSMUSG00000032807 | Alox12b | [NAME] | arachidonate 12-lipoxygenase, 12R type
chr18-67 | chr18 | 39018882 | 39019084 | + | 10.2 | 0.737 | intron (NM_010197, intron 1 of 3) | intron (NM_010197, intron 1 of 3) | -33127 | NM_001033789 | 545253 | Mm.244585 | NM_001033789 |  | Gm5820 | EG545253 | predicted gene 5820
chr16-79 | chr16 | 18229270 | 18229472 | + | 10.2 | 0.765 | [NAME] intron 1 of 10) | [NAME] intron 1 of 10) | 5858 | NM_172151 | 27801 | Mm.326263 | NM_172151 | ENSMUSG00000060166 | Zdhhc8 | D16H22S1738E|DHHC-8|E330009O14Rik|MGC103030|MGC118171|MGC7847|Op53c05|ZDHHCL1 | zinc finger, DHHC domain containing 8
chr2-153 | chr2 | 169065071 | 169065273 | + | 10.2 | 0.867 | Intergenic | Intergenic | 261403 | NR_040326 | 75508 | Mm.271256 | NR_040326 |  | 1700017J07Rik | - | RIKEN cDNA 1700017J07 gene
[NAME] | chr11 | 95253834 | 95254036 | + | 10.2 | 0.765 | TTS (NM_016752) | TTS (NM_016752) | 7699 | NM_016752 | 110172 | Mm.4593 | NM_016752 | ENSMUSG00000020873 | Slc35b1 | Ugalt2 | solute carrier family 35, member B1
chr10-144 | chr10 | 122116584 | 122116786 | + | 10.2 | 0.688 | intron (NM_001110218, intron 1 of 9) | intron (NM_001110218, intron 1 of 9) | 867 | NM_001110218 | 319468 | Mm.489703 | NM_001110218 | ENSMUSG00000034613 | Ppm1h | A430075L18Rik|ARHCL1|C030002B11Rik | protein phosphatase 1H (PP2C domain containing)
chr12-803 | chr12 | 105270597 | 105270799 | + | 10.2 | 0.591 | exon (NM_026535, exon 4 of 5) | exon (NM_026535, exon 4 of 5) | 11955 | [NAME] | 68054 | Mm.20286 | [NAME] | ENSMUSG00000041567 | Serpina12 | 4632419J12Rik | serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, [NAME]), member 12
chr4-297 | chr4 | 114728887 | 114729089 | + | 10.2 | 0.765 | Intergenic | CpG | -3144 | NM_011527 | 21349 | Mm.439685 | NM_011527 | ENSMUSG00000028717 | Tal1 | SCL/tal-1|Scl|bHLHa17|tal-1 | T cell acute lymphocytic leukemia 1
chr19-86 | chr19 | 6595655 | 6595857 | + | 10.2 | 0.75 | Intergenic | Intergenic | -52686 | NM_009203 | 20521 | Mm.391146 | NM_009203 | [NAME] | Slc22a12 | AI987855|OAT4L|Rst|Slc22al2|URAT1 | solute carrier family 22 (organic anion/cation transporter), member 12
chr14-120 | chr14 | 48265963 | 48266165 | + | 10.2 | 0.778 | Intergenic | Intergenic | -17367 | NM_008477 | 16709 | [NAME] | NM_008477 | ENSMUSG00000021843 | Ktn1 | - | [NAME]
chr8-891 | chr8 | 119161333 | 119161535 | + | 10.2 | 0.722 | [NAME] (NM_029441, intron 1 of 6) | [NAME] (NM_029441, intron 1 of 6) | 95457 | NM_029441 | 75796 | Mm.159575 | NM_029441 | ENSMUSG00000031758 | Cdyl2 | 1700029M19Rik|4930453I21Rik|Gm20194 | chromodomain protein, Y chromosome-like 2
chr8-728 | chr8 | 78206935 | 78207137 | + | 10.2 | 0.824 | intron (NM_027944, intron 7 of 12) | Lx2|LINE|L1 | 234443 | NM_001164235 | 71831 | Mm.443238 | NM_001164235 | ENSMUSG00000031620 | 1700007B14Rik | MGC143580|MGC143581 | RIKEN cDNA 1700007B14 gene
chr11-261 | chr11 | 7873669 | 7873871 | + | 10.2 | 0.933 | Intergenic | Lx4A|LINE|L1 | 690768 | NM_001083587 | 319939 | Mm.337820 | NM_001083587 | ENSMUSG00000020422 | Tns3 | BC023928|F830010I22Rik|TEM6|Tens1 | tensin 3
chr6-336 | chr6 | 124271620 | 124271822 | + | 10.2 | 0.75 | intron (NM_053094, intron 11 of 16) | RLTR19-int|LTR|ERVK | 17052 | NM_053094 | 93671 | Mm.37426 | NM_001170395 | ENSMUSG00000008845 | Cd163 | CD163v2|CD163v3 | CD163 antigen
chr1-213 | chr1 | 136112366 | 136112568 | + | 10.2 | 0.882 | intron (NM_001008533, intron 1 of 1) | intron (NM_001008533, intron 1 of 1) | 19537 | NM_001008533 | 11539 | Mm.298908 | NM_009629 | ENSMUSG00000042429 | Adora1 | [NAME] | adenosine A1 receptor
chr8-699 | chr8 | 25551431 | 25551633 | + | 10.2 | 0.765 | Intergenic | B3|SINE|B2 | -2114 | [NAME] | 69068 | Mm.25775 | [NAME] | ENSMUSG00000056313 | 1810011O10Rik | 1110065B09Rik|AW121743|AW321058 | RIKEN cDNA 1810011O10 gene
chr2-115 | chr2 | 93434883 | 93435085 | + | 10.2 | 0.833 | Intergenic | Intergenic | -47607 | NM_007442 | 11695 | Mm.389389 | NM_007442 | ENSMUSG00000040310 | Alx4 | lst | aristaless-like homeobox 4
chr1-181 | chr1 | 74462187 | 74462389 | + | 10.2 | 0.65 | [NAME] (NM_009509, intron 2 of 19) | [NAME] (NM_009509, intron 2 of 19) | 6330 | NM_009509 | 22349 | Mm.471601 | NM_009509 | ENSMUSG00000026175 | Vil1 | MGC143974|Vil | [NAME] 1
chr11-356 | chr11 | 109346167 | 109346369 | + | 10.2 | 0.812 | intron (NM_028710, intron 1 of 13) | MTD|LTR|MaLR | -11358 | NM_001029842 | 104681 | Mm.265874 | NM_001029842 | ENSMUSG00000041920 | Slc16a6 | AW743111|ESTM12|MCT 6|MCT 7|MCT6|MGC27628 | solute carrier family 16 (monocarboxylic acid transporters), member 6
chr16-97 | chr16 | 91390427 | 91390629 | + | 10.2 | 0.778 | intron (NM_001110498, intron 5 of 6) | B3A|SINE|B2 | -15952 | NM_008349 | 16155 | Mm.4154 | NM_008349 | ENSMUSG00000022969 | Il10rb | 6620401D04Rik|AI528744|CRF2-4|Crfb4|D16H21S58|D21S58h|IL-10R2|Il10r2 | interleukin 10 receptor, beta
chr19-122 | chr19 | 46647052 | 46647254 | + | 10.2 | 0.737 | promoter-TSS (NM_053196) | promoter-TSS (NM_053196) | 422 | NM_019718 | 56350 | Mm.22085 | NM_019718 | ENSMUSG00000025035 | Arl3 | - | ADP-ribosylation factor-like 3
chr7-167 | chr7 | 75894301 | 75894503 | + | 10.2 | 0.632 | promoter-TSS (NM_001042592) | promoter-TSS (NM_001042592) | -278 | NM_025549 | 66412 | Mm.251199 | NM_001042592 | ENSMUSG00000042659 | Arrdc4 | 2410003C09Rik|AV216361 | arrestin domain containing 4
chr8-667 | chr8 | 13890378 | 13890580 | + | 10.2 | 0.875 | promoter-TSS (NM_025556) | promoter-TSS (NM_025556) | -208 | NM_025556 | 66423 | Mm.29063 | NM_025556 | ENSMUSG00000031458 | 2410022L05Rik | 1700029I03Rik|AA409325|AI256813|C85432|Copr5|MGC11316 | RIKEN cDNA 2410022L05 gene
chr9-151 | chr9 | 96378476 | 96378678 | + | 10.2 | 0.812 | [NAME] (NM_011279, intron 1 of 2) | ID_B1|SINE|B4 | 437 | NM_011279 | 19823 | Mm.28235 | NM_011279 | ENSMUSG00000051234 | Rnf7 | Rbx2|SAG | ring finger protein 7
chr2-136 | chr2 | 155411084 | 155411286 | + | 10.2 | 0.762 | [NAME] (NM_008180, intron 2 of 12) | [NAME] (NM_008180, intron 2 of 12) | 7257 | NM_008180 | 14854 | Mm.252316 | NM_008180 | ENSMUSG00000027610 | Gss | AI314904|GS-A/GS-B | glutathione synthetase
chr5-146 | chr5 | 120615177 | 120615379 | + | 10.2 | 0.722 | [NAME] (NM_028762, intron 21 of 23) | [NAME] (NM_028762, intron 21 of 23) | -26006 | NR_045793 | 100503427 | Mm.447034 | NR_045793 |  | [NAME] | ENSMUSG00000072671 | predicted gene 10390
chr3-121 | chr3 | 134991641 | 134991843 | + | 10.2 | 0.778 | [NAME] (NM_178877, intron 7 of 12) | B3|SINE|B2 | -19259 | NM_028946 | 74446 | Mm.85000 | NM_028946 | ENSMUSG00000050150 | Nhedc1 | 1700094G20Rik|4933424B12Rik|4933425K02Rik|AV258602|Slc9b1|mtsNHE | Na+/H+ exchanger domain containing 1
chr11-300 | chr11 | 76258960 | 76259162 | + | 10.2 | 0.765 | intron (NM_198018, intron 15 of 21) | intron (NM_198018, intron 15 of 21) | 38392 | NM_019818 | 56322 | Mm.18803 | NM_019818 | ENSMUSG00000020843 | Timm22 | 2610511O07Rik|Tim22 | translocase of inner mitochondrial membrane 22 homolog (yeast)
chr19-105 | chr19 | 37961304 | 37961506 | + | 10.2 | 0.778 | Intergenic | Intergenic | 156662 | NM_001099634 | 226101 | Mm.34674 | NM_001099634 | ENSMUSG00000048612 | Myof | 2310004N10Rik|2310051D19Rik|E030042N20Rik|Fer1l3 | myoferlin
chr11-379 | chr11 | 117472480 | 117472682 | + | 10.2 | 0.824 | promoter-TSS (NR_015489) | promoter-TSS (NR_015489) | 20 | NR_015489 | 78403 | [NAME] | NR_015489 |  | 2900041M22Rik | - | RIKEN cDNA 2900041M22 gene
chr7-158 | chr7 | 52349619 | 52349821 | + | 10.2 | 0.789 | [NAME] (NM_010189, intron 5 of 6) | [NAME] (NM_010189, intron 5 of 6) | -2137 | NM_026555 | 52377 | Mm.29997 | NM_026555 | ENSMUSG00000019539 | [NAME] | 6030455P07Rik|D530026G20Rik|D7Ertd671e|MGC102610|RLP49 | reticulocalbin 3, EF-hand calcium binding domain
chr13-95 | chr13 | 54311420 | 54311622 | + | 10.2 | 0.542 | intron (NM_001010973, intron 2 of 2) | intron (NM_001010973, intron 2 of 2) | 24023 | NM_008286 | 15466 | Mm.57243 | NM_001010973 | ENSMUSG00000034987 | Hrh2 | - | histamine receptor H2
chr8-998 | chr8 | 127426046 | 127426248 | + | 10.2 | 0.682 | [NAME] (NM_001111141, intron 4 of 4) | [NAME] (NM_001111141, intron 4 of 4) | 4361 | NM_001111141 | 244666 | Mm.482915 | NM_001111141 | ENSMUSG00000031986 | Gm505 | - | predicted gene 505
chr4-228 | chr4 | 40895420 | 40895622 | + | 10.2 | 0.765 | promoter-TSS (NM_001171739) | promoter-TSS (NM_001171739) | -65 | NM_029814 | 76959 | Mm.212763 | NM_029814 | ENSMUSG00000028419 | Chmp5 | 2210412K09Rik|AW545668 | charged multivesicular body protein 5
chr5-152 | chr5 | 122341208 | 122341410 | + | 10.2 | 0.737 | [NAME] (NM_007804, intron 5 of 22) | [NAME] (NM_007804, intron 5 of 22) | 42272 | NM_175474 | 231717 | Mm.12654 | NM_175474 | ENSMUSG00000044134 | Fam109a | A230106M15Rik|AU017694|IPIP27A|Ses1 | family with sequence similarity 109, member A
chr8-624 | chr8 | 10660396 | 10660598 | + | 10.2 | 0.824 | Intergenic | Intergenic | 221957 | NR_040705 | 320014 | Mm.403203 | NR_040705 |  | B930025P03Rik | - | RIKEN cDNA B930025P03 gene
chr12-970 | chr12 | 112409796 | 112409998 | + | 10.2 | 0.765 | [NAME] (NM_011632, intron 1 of 11) | [NAME] (NM_011632, intron 1 of 11) | 5138 | NM_001048206 | 22031 | Mm.27431 | NM_001048206 | ENSMUSG00000021277 | Traf3 | AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn | TNF receptor-associated factor 3
chr6-426 | chr6 | 137581695 | 137581897 | + | 10.2 | 0.733 | [NAME] (NM_007945, intron 1 of 21) | [NAME] (NM_007945, intron 1 of 21) | 15845 | NM_007945 | 13860 | Mm.235346 | NM_007945 | ENSMUSG00000015766 | Eps8 | AW261790 | epidermal growth factor receptor pathway substrate 8
chr10-119 | chr10 | 79655935 | 79656137 | + | 10.2 | 0.933 | Intergenic | Intergenic | 13809 | NM_007909 | 13637 | Mm.1478 | NM_007909 | ENSMUSG00000003070 | Efna2 | [NAME] | ephrin A2
chr15-74 | chr15 | 74610735 | 74610937 | + | 10.2 | 0.722 | Intergenic | Intergenic | -1547 | NR_027837 | 78725 | Mm.171357 | NM_172433 |  | D730001G18Rik | - | RIKEN cDNA D730001G18 gene
chr17-245 | chr17 | 88198844 | 88199046 | + | 10.2 | 0.933 | Intergenic | Intergenic | -1611 | [NAME] | 210741 | Mm.312046 | [NAME] | [NAME] | [NAME] | mntk1 | potassium channel, subfamily K, member 12
chr8-873 | chr8 | 113436168 | 113436370 | + | 10.2 | 0.591 | Intergenic | Intergenic | -7496 | NM_009179 | 20444 | Mm.200388 | NM_009179 | ENSMUSG00000031749 | St3gal2 | AI429591|AW822065|ST3GalII|Siat5 | ST3 beta-galactoside alpha-2,3-sialyltransferase 2
chr9-120 | chr9 | 43653121 | 43653323 | + | 10.2 | 0.765 | Intergenic | Intergenic | 100563 | NM_021424 | 58235 | Mm.335096 | NM_021424 | ENSMUSG00000032012 | Pvrl1 | AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|nectin-1 | poliovirus receptor-related 1
chr6-415 | chr6 | 135825379 | 135825581 | + | 10.2 | 0.684 | intron (NM_008171, intron 5 of 14) | intron (NM_008171, intron 5 of 14) | 298049 | NM_008171 | 14812 | Mm.436649 | NM_008171 | ENSMUSG00000030209 | Grin2b | AW490526|NR2B|Nmdar2b | glutamate receptor, ionotropic, NMDA2B (epsilon 2)
chr2-149 | chr2 | 166225094 | 166225296 | + | 10.2 | 0.619 | Intergenic | B4A|SINE|B4 | -47756 | NR_015558 | 319684 | Mm.399746 | NR_015558 |  | 5031425F14Rik | - | RIKEN cDNA 5031425F14 gene
chr11-358 | chr11 | 113281311 | 113281513 | + | 10.2 | 0.706 | [NAME] (NM_027216, intron 5 of 9) | [NAME] (NM_027216, intron 5 of 9) | 145717 | NM_001166503 | 69806 | Mm.341021 | NM_001166503 | ENSMUSG00000041654 | Slc39a11 | 1810074D23Rik | solute carrier family 39 (metal ion transporter), member 11
chr9-118 | chr9 | 42939510 | 42939712 | + | 10.2 | 0.812 | intron (NM_011139, intron 10 of 12) | B3|SINE|B2 | -14958 | NM_001034863 | 235300 | Mm.261326 | NM_001034863 | ENSMUSG00000048503 | Tmem136 | AA396355|Gm184 | [NAME] 136
chr8-836 | chr8 | 106548668 | 106548870 | + | 10.2 | 0.824 | Intergenic | L3|LINE|CR1 | -76756 | NM_009868 | 12562 | Mm.21767 | NM_009868 | ENSMUSG00000031871 | Cdh5 | 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec | cadherin 5
chr5-153 | chr5 | 122919244 | 122919446 | + | 10.2 | 0.824 | [NAME] intron 8 of 20) | [NAME] intron 8 of 20) | 32889 | [NAME] | 11938 | Mm.227583 | [NAME] | ENSMUSG00000029467 | Atp2a2 | 9530097L16Rik|D5Wsu150e|KIAA4195|SERCA2|SERCA2B|mKIAA4195 | ATPase, Ca++ transporting, cardiac muscle, slow twitch 2
chr2-142 | chr2 | 160345001 | 160345203 | + | 10.2 | 0.65 | Intergenic | Intergenic | -126531 | NM_009408 | 21969 | Mm.217233 | NM_009408 | ENSMUSG00000070544 | Top1 | AI467334|D130064I21Rik|Top-1 | topoisomerase (DNA) I
chr9-116 | chr9 | 36953362 | 36953564 | + | 10.2 | 0.812 | [NAME] intron 1 of 12) | [NAME] intron 1 of 12) | 1388 | NM_001029838 | 208076 | [NAME] | NM_001029838 | ENSMUSG00000035934 | Pknox2 | [NAME] | Pbx/knotted 1 homeobox 2
chr6-406 | chr6 | 134449500 | 134449702 | + | 10.2 | 0.714 | [NAME] (NM_008514, intron 7 of 22) | ORR1A1|LTR|MaLR | 67330 | NM_008514 | 16974 | Mm.321990 | NM_008514 | ENSMUSG00000030201 | Lrp6 | C030016K15Rik|Cd|Gw | low density lipoprotein receptor-related protein 6
chr6-378 | chr6 | 126688306 | 126688508 | + | 10.2 | 0.722 | exon (NM_013568, exon 1 of 2) | exon (NM_013568, exon 1 of 2) | 2285 | NM_013568 | 16494 | Mm.62535 | NM_013568 | ENSMUSG00000038077 | Kcna6 | Kv1.6|MK1.6 | potassium voltage-gated channel, shaker-related, subfamily, member 6
chr10-123 | chr10 | 80053346 | 80053548 | + | 10.2 | 0.722 | promoter-TSS (NM_145421) | promoter-TSS (NM_145421) | -361 | NM_145421 | 216169 | Mm.29802 | NM_145421 | ENSMUSG00000003346 | Fam108a | 1700013O15Rik|BC005632|D10Bwg1364e|MGC11699|MGC90979 | family with sequence similarity 108, member A
chr15-98 | chr15 | 82083089 | 82083291 | + | 10.2 | 0.875 | [NAME] (NR_037697, intron 1 of 1) | [NAME] (NR_037697, intron 1 of 1) | 363 | NR_037697 | 76505 | Mm.23023 | NR_037697 | ENSMUSG00000068099 | 1500009C09Rik | - | RIKEN cDNA 1500009C09 gene
chr6-264 | chr6 | 51120200 | 51120402 | + | 10.2 | 0.7 | Intergenic | Intergenic | 99608 | NR_029719 | 387166 |  | NR_029719 |  | Mir148a | Mirn148|Mirn148a | microRNA [NAME]
chr7-172 | chr7 | 98516377 | 98516579 | + | 10.2 | 0.75 | intron (NM_011807, intron 1 of 22) | B4A|SINE|B4 | 277182 | NM_011807 | 23859 | Mm.257035 | NM_001243046 | ENSMUSG00000052572 | Dlg2 | A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|PSD93 | discs, large homolog 2 (Drosophila)
chr6-457 | chr6 | 145402129 | 145402331 | + | 10.2 | 0.682 | Intergenic | Intergenic | -18785 | NM_028742 | 74071 | Mm.441497 | XM_003689397 | ENSMUSG00000054966 | Ifltd1 | 4933403M22Rik|AI482300|Lmna-rs1|Lmna1 | intermediate filament tail domain containing 1
chr2-127 | chr2 | 132205336 | 132205538 | + | 10.2 | 0.727 | [NAME], intron 2 of 2) | [NAME], intron 2 of 2) | 5746 | NM_144944 | 246313 | Mm.283777 | NM_144944 | ENSMUSG00000050558 | Prokr2 | B830005M06Rik|EG-VEGRF2|Gpcr73l1|Gpr73l1|PKR2 | prokineticin receptor 2
chr12-653 | chr12 | 12183578 | 12183780 | + | 10.2 | 0.619 | Intergenic | Intergenic | -85266 | NM_029758 | 76820 | Mm.440802 | NM_001146119 | ENSMUSG00000020589 | Fam49a | 2410157M17Rik|9630047E15|D12Ertd553e | family with sequence similarity 49, member A
chr4-396 | chr4 | 155609165 | 155609367 | + | 10.2 | 0.875 | promoter-TSS (NM_198305) | promoter-TSS (NM_198305) | -300 | NM_198305 | 231003 | Mm.423038 | NM_198305 | ENSMUSG00000078484 | Klhl17 | AL022703|BC058738 | kelch-like 17 (Drosophila)
chr11-256 | chr11 | 3998902 | 3999104 | + | 10.2 | 0.812 | [NAME] (NM_144520, intron 11 of 11) | [NAME] (NM_144520, intron 11 of 11) | -3569 | NM_026443 | 67900 | Mm.41719 | NM_026443 | ENSMUSG00000004748 | Mtfp1 | 1700020C11Rik|2610507A21Rik|AV005788|Mtp18 | mitochondrial fission process 1
chr8-901 | chr8 | 120317071 | 120317273 | + | 10.2 | 0.55 | [NAME] (NM_026758, intron 3 of 4) | [NAME] (NM_026758, intron 3 of 4) | 8657 | NM_026758 | 68533 | Mm.181836 | NM_026758 | ENSMUSG00000031843 | Mphosph6 | 1110001M01Rik|AA536809|C86426 | M phase phosphoprotein 6
chr5-160 | chr5 | 130507921 | 130508123 | + | 10.2 | 0.812 | [NAME], intron 1 of 5) | [NAME], intron 1 of 5) | 2846 | NM_007761 | 12909 | Mm.469947 | NM_007761 | ENSMUSG00000025532 | Crcp | AL022669 | calcitonin gene-related peptide-receptor component protein
chr13-88 | chr13 | 37532586 | 37532788 | + | 10.2 | 0.682 | Intergenic | Intergenic | 95473 | NM_010745 | 17084 | Mm.2639 | NM_010745 | ENSMUSG00000021423 | Ly86 | MD-1|MD1 | [NAME] 86
chr10-137 | chr10 | 98723808 | 98724010 | + | 10.2 | 0.75 | Intergenic | Intergenic | -1956 | NM_026268 | 67603 | Mm.1791 | NM_026268 | ENSMUSG00000019960 | Dusp6 | 1300019I03Rik|MGC98540|MKP-3|MKP3|PYST1 | dual specificity phosphatase 6
chr15-63 | chr15 | 36562930 | 36563132 | + | 10.2 | 0.875 | Intergenic | Intergenic | -24303 | NM_008774 | 18458 | Mm.371570 | NM_008774 | ENSMUSG00000022283 | Pabpc1 | PABP|Pabp1|PabpI|Pabpl1|ePAB | poly(A) binding protein, cytoplasmic 1
chr4-290 | chr4 | 110979864 | 110980066 | + | 10.2 | 0.875 | intron (NM_030231, intron 5 of 12) | intron (NM_030231, intron 5 of 12) | -107646 | NR_033793 | 67621 | Mm.45533 | NM_026279 | ENSMUSG00000028545 | Bend5 | 2310026E23Rik | [NAME] domain containing 5
chr13-111 | chr13 | 120283756 | 120283958 | + | 10.2 | 0.579 | [NAME], intron 2 of 2) | [NAME], intron 2 of 2) | 6190 | NM_001177666 | 633640 | Mm.46679 | NM_001039244 |  | Gm7120 | EG633640|MGC118117|MGC29320 | predicted gene 7120
chr2-111 | chr2 | 84584186 | 84584388 | + | 10.2 | 0.667 | Intergenic | Intergenic | -2952 | NR_029544 | 387149 |  | NR_029544 |  | Mir130a | Mirn130|Mirn130a | microRNA 130a
chr1-239 | chr1 | 191168461 | 191168663 | + | 10.2 | 0.833 | promoter-TSS (NR_027627) | promoter-TSS (NR_027627) | -491 | NR_027627 | 16526 | Mm.33304 | NM_001159850 | ENSMUSG00000037624 | Kcnk2 | A430027H14Rik|AI848635|TREK-1 | potassium channel, subfamily K, member 2
chr8-743 | chr8 | 81895798 | 81896000 | + | 10.2 | 0.632 | exon (NM_008539, exon 2 of 7) | exon (NM_008539, exon 2 of 7) | 27468 | NM_008539 | 17125 | Mm.223717 | NM_008539 | ENSMUSG00000031681 | Smad1 | AI528653|Madh1|Madr1|Mlp1|MusMLP | MAD homolog 1 (Drosophila)
chr19-129 | chr19 | 59313923 | 59314125 | + | 10.2 | 0.65 | Intergenic | Intergenic | 19886 | NM_207261 | 332396 | Mm.329947 | NM_207261 | ENSMUSG00000040901 | Kcnk18 | Gm781|Tresk|Tresk-2|Trik | potassium channel, subfamily K, member 18
chr7-143 | chr7 | 29652679 | 29652881 | + | 10.2 | 0.684 | Intergenic | Intergenic | 3375 | NM_008496 | 16858 | Mm.20973 | NM_008496 | ENSMUSG00000053522 | Lgals7 | [NAME] | lectin, galactose binding, soluble 7
chr6-256 | chr6 | 5002374 | 5002576 | + | 10.2 | 0.765 | [NAME] (NM_181595, intron 3 of 15) | [NAME] (NM_181595, intron 3 of 15) | 141471 | NM_011134 | 18979 | Mm.237657 | NM_011134 | ENSMUSG00000002588 | Pon1 | Pon | paraoxonase 1
chr8-853 | chr8 | 108928433 | 108928635 | + | 10.2 | 0.778 | Intergenic | Intergenic | -10705 | NM_011764 | 22751 | Mm.295582 | NM_011764 | ENSMUSG00000031907 | Zfp90 | 6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954 | zinc finger protein 90
chr6-465 | chr6 | 146273152 | 146273354 | + | 10.2 | 0.875 | [NAME] (NM_010586, intron 30 of 55) | [NAME] (NM_010586, intron 30 of 55) | 177181 | NM_010586 | 16439 | Mm.393003 | NM_010586 | ENSMUSG00000030287 | Itpr2 | AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5 | inositol 1,4,5-triphosphate receptor 2
chr3-100 | chr3 | 108846548 | 108846750 | + | 10.2 | 0.833 | Intergenic | Intergenic | -16124 | NM_001163567 | 329739 | Mm.69013 | NM_001163567 | ENSMUSG00000040339 | Fam102b | 1600010D10Rik|B430201A12Rik | family with sequence similarity 102, member B
chr2-133 | chr2 | 152908451 | 152908653 | + | 10.2 | 0.824 | Intergenic | L1ME5|LINE|L1 | 16814 | NM_145536 | 228788 | Mm.299979 | NM_145536 | ENSMUSG00000027474 | BC020535 | MGC19360 | cDNA sequence BC020535
chr10-150 | chr10 | 127936437 | 127936639 | + | 10.2 | 0.55 | promoter-TSS (NM_172259) | promoter-TSS (NM_172259) | -797 | NM_172259 | 216459 | Mm.291688 | NM_172259 | ENSMUSG00000039824 | Myl6b | 5730437E04Rik|BC037527|MGC41229|MLC1SA | [NAME], light polypeptide 6B
[NAME] | chr14 | 32200884 | 32201086 | + | 10.2 | 0.765 | exon (NM_011894, exon 4 of 9) | exon (NM_011894, exon 4 of 9) | 48234 | NM_011894 | 24056 | Mm.383198 | NM_011894 | ENSMUSG00000021892 | Sh3bp5 | AI606498|SH3BP-5|Sab | SH3-domain binding protein 5 (BTK-associated)
chr5-174 | chr5 | 144134402 | 144134604 | + | 10.2 | 0.7 | [NAME] (NM_133355, intron 1 of 20) | RSINE1|SINE|B4 | 8916 | NM_133355 | 170935 | Mm.197460 | NM_001038019 | ENSMUSG00000010825 | Grid2ip | - | glutamate receptor, ionotropic, delta 2 (Grid2) interacting protein 1
chr5-136 | chr5 | 108329406 | 108329608 | + | 10.2 | 0.778 | promoter-TSS (NM_016980) | promoter-TSS (NM_016980) | -40 | NM_016980 | 100503670 | Mm.489611 | NM_016980 | ENSMUSG00000058558 | Rpl5 | MGC101934|MGC102309|MGC117998|MGC25420|U21RNA | ribosomal protein L5
chr6-272 | chr6 | 113027999 | 113028201 | + | 10.2 | 0.632 | promoter-TSS (NR_027010) | promoter-TSS (NR_027010) | 467 | NM_028385 | 72895 | Mm.367159 | NM_028385 | ENSMUSG00000034269 | Setd5 | 2900045N06Rik|C330007C20|C85544|FLJ10707|MGC90828|mKIAA1757 | SET domain containing 5
chr8-716 | chr8 | 47772215 | 47772417 | + | 10.2 | 0.722 | Intergenic | L1M6|LINE|L1 | 52553 | NR_045750 | 100503498 | Mm.187358 | NR_045750 |  | Gm16675 | - | predicted gene, 16675
chr5-143 | chr5 | 116566632 | 116566834 | + | 10.2 | 0.579 | Intergenic | Intergenic | -33478 | NM_001101546 | 545798 | Mm.483995 | NM_001101546 | ENSMUSG00000079278 | Tmem233 | Gm13843|OTTMUSG00000014722 | [NAME] 233
chr11-319 | chr11 | 94792624 | 94792826 | + | 10.2 | 0.778 | Intergenic | B2_Mm1t|SINE|B2 | -4859 | NM_007742 | 12842 | Mm.458212 | NM_007742 | ENSMUSG00000001506 | Col1a1 | Col1a-1|Cola-1|Cola1|Mov-13|Mov13 | collagen, type I, alpha 1
chr11-309 | chr11 | 80932715 | 80932917 | + | 10.2 | 0.684 | intron (NM_001034013, intron 1 of 9) | MT2B|LTR|ERVL | 33589 | NM_007384 | 11418 | Mm.234998 | NM_001034013 | ENSMUSG00000020704 | [NAME] | ACIC2|ASIC2|BNC1|BNaC1|BNaC1a|Mdeg | amiloride-sensitive cation channel 1, neuronal (degenerin)
chr17-235 | chr17 | 63850014 | 63850216 | + | 10.2 | 0.875 | promoter-TSS (NM_015794) | promoter-TSS (NM_015794) | -186 | NM_015794 | 50758 | Mm.136366 | NM_177143 | ENSMUSG00000023965 | Fbxl17 | 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 | F-box and leucine-rich repeat protein 17
chr8-972 | chr8 | 125449438 | 125449640 | + | 10.2 | 0.875 | [NAME] (NR_037865, intron 2 of 13) | MTC|LTR|MaLR | 77265 | NM_007662 | 12555 | Mm.1976 | NM_007662 | ENSMUSG00000031962 | Cdh15 | AI323380|Cdh14|Mcad | cadherin 15
chr1-216 | chr1 | 152932106 | 152932308 | + | 10.2 | 0.75 | Intergenic | L1MEb|LINE|L1 | -52957 | NR_038011 | 402734 | Mm.337666 | NR_038011 |  | C730036E19Rik | - | RIKEN cDNA C730036E19 gene
chr8-827 | chr8 | 97701825 | 97702027 | + | 10.2 | 0.765 | Intergenic | Intergenic | -35486 | NM_001145831 | 16582 | Mm.378951 | NM_001145831 | ENSMUSG00000031788 | [NAME] | AI325457|BB123200 | [NAME] member [NAME]
chr17-142 | chr17 | 6474629 | 6474831 | + | 10.2 | 0.524 | Intergenic | Intergenic | -24588 | NR_033520 | 547127 | Mm.381893 | NR_033520 |  | Tmem181b-ps | MGC107046|MGC182472|Tmem181b | [NAME] 181B, pseudogene
chr17-246 | chr17 | 88655343 | 88655545 | + | 10.2 | 0.611 | Intergenic | CpG | 130592 | NM_001190356 | 225058 | Mm.312053 | NM_001190356 |  | [NAME] | EG225058 | predicted gene 4832
chr7-185 | chr7 | 133540280 | 133540482 | + | 10.2 | 0.714 | promoter-TSS (NM_010900) | promoter-TSS (NM_010900) | -130 | NM_010900 | 18020 | Mm.1389 | NM_010900 | ENSMUSG00000030722 | Nfatc2ip | D7Ertd304e|MGC130564|NIP45 | nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2 interacting protein
chr13-89 | chr13 | 43791375 | 43791577 | + | 10.2 | 0.933 | Intergenic | B1_Mm|SINE|Alu | -20684 | NR_046022 | 622552 | Mm.375036 | NR_046022 |  | LOC622552 | - | uncharacterized LOC622552
chrX-44 | chrX | 121233899 | 121234101 | + | 10.2 | 0.938 | Intergenic | L1_Mus3|LINE|L1 | 15519 | NM_001100616 | 100038941 | Mm.388852 | NM_001100616 | ENSMUSG00000072049 | Vmn2r121 | EG625699 | vomeronasal 2, receptor 121
chr8-730 | chr8 | 79680103 | 79680305 | + | 10.2 | 0.833 | [NAME] (NM_001083906, intron 4 of 8) | [NAME] (NM_001083906, intron 4 of 8) | 253797 | NM_001083906 | 110784 | Mm.324393 | NM_001083906 | ENSMUSG00000031618 | Nr3c2 | MR|Mlr | nuclear receptor subfamily 3, group C, member 2
chr2-101 | chr2 | 33296590 | 33296792 | + | 10.2 | 0.611 | Intergenic | Intergenic | -9847 | NM_001085507 | 241311 | Mm.296512 | NM_001085507 | ENSMUSG00000068966 | Zbtb34 | Gm349|mKIAA1993 | zinc finger and BTB domain containing 34
chrX-43 | chrX | 99447745 | 99447947 | + | 10.2 | 0.688 | promoter-TSS (NM_007709) | promoter-TSS (NM_007709) | -144 | NR_040285 | 434825 | [NAME] | NR_040285 |  | LOC434825 | - | uncharacterized LOC434825
chr6-319 | chr6 | 119606768 | 119606970 | + | 10.2 | 0.812 | [NAME] (NM_053204, intron 17 of 20) | [NAME] (NM_053204, intron 17 of 20) | -112504 | NM_009525 | 22419 | Mm.321818 | NM_009525 | ENSMUSG00000030170 | Wnt5b | AW545702|Wnt-5b | wingless-related MMTV integration site 5B
chr1-209 | chr1 | 121320198 | 121320400 | + | 10.2 | 0.667 | Intergenic | Intergenic | -1474 | NM_008381 | 16324 | Mm.3092 | NM_008381 | ENSMUSG00000037035 | Inhbb | - | [NAME]
chr8-864 | chr8 | 111235581 | 111235783 | + | 10.2 | 0.684 | Intergenic | Intergenic | -2862 | NM_007496 | 11906 | Mm.477670 | NM_007496 | ENSMUSG00000038872 | Zfhx3 | A230102L03Rik|Atbf1|KIAA4228|WBP9|mKIAA4228 | zinc finger homeobox 3
chr3-79 | chr3 | 93251686 | 93251888 | + | 10.2 | 0.65 | exon (NM_001163098, exon 2 of 2) | exon (NM_001163098, exon 2 of 2) | 5535 | NM_001163098 | 99681 | Mm.316671 | NM_001163098 | ENSMUSG00000052415 | Tchh | AHF|AI597080|Thh | trichohyalin
chr2-98 | chr2 | 31993040 | 31993242 | + | 10.2 | 0.8 | Intergenic | Intergenic | -13527 | NM_172661 | 227723 | Mm.25504 | NM_001159634 | ENSMUSG00000039262 | Prrc2b | 5830434P21Rik|AI173903|Bat2l|Bat2l1|D430039P21|mKIAA0515 | proline-rich coiled-coil 2B
chr15-64 | chr15 | 38187973 | 38188175 | + | 10.2 | 0.812 | Intergenic | LTR48|LTR|ERV1 | 39116 | NM_008757 | 18285 | Mm.252830 | NM_008757 | ENSMUSG00000061923 | Odf1 | - | outer dense fiber of sperm tails 1
chr7-198 | chr7 | 148233394 | 148233596 | + | 10.2 | 0.619 | Intergenic | Intergenic | -13678 | NM_177897 | 330671 | Mm.133741 | NM_177897 | ENSMUSG00000055629 | B4galnt4 | BC038881|Gm1095|MGC48196|beta4GalNAcT4 | beta-1,4-N-acetyl-galactosaminyl transferase 4
chr12-723 | chr12 | 99083743 | 99083945 | + | 10.2 | 0.619 | Intergenic | Lx3B|LINE|L1 | 413703 | NM_008079 | 14420 | Mm.5120 | NM_008079 | ENSMUSG00000021003 | Galc | 2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher | galactosylceramidase
chr6-401 | chr6 | 133026609 | 133026811 | + | 10.2 | 0.737 | Intergenic | Lx|LINE|L1 | -20899 | NM_021562 | 387616 | Mm.422613 | NM_021562 | ENSMUSG00000071147 | [NAME] | T2R40|T2r34|TRB3|TRB5|Tas2r13|Tas2r137|Tas2r40|Tas2r8|mTRB3|mt2r64 | taste receptor, type 2, member 140
chr10-140 | chr10 | 111184085 | 111184287 | + | 10.2 | 0.688 | Intergenic | RMER1A|Other|Other | 127246 | NR_046029 | 629206 | Mm.391444 | NR_046029 |  | LOC629206 | - | uncharacterized LOC629206
chr8-884 | chr8 | 114362342 | 114362544 | + | 10.2 | 0.824 | [NAME] (NM_011801, intron 4 of 6) | B3|SINE|B2 | 15767 | NM_011801 | 23837 | Mm.279437 | NM_011801 | ENSMUSG00000031954 | Cfdp1 | AA408409|Bcnt|Bucentaur|Cfdp|cp27 | craniofacial development protein 1
chr16-69 | chr16 | 10556272 | 10556474 | + | 10.2 | 0.706 | intron (NM_177562, intron 1 of 22) | B1_Mus1|SINE|Alu | 10941 | NM_001204229 | 74374 | Mm.159176 | NM_001204229 | ENSMUSG00000068663 | Clec16a | 4932416N17Rik|KIAA0350|mKIAA0350 | C-type lectin domain family 16, member A
chr11-380 | chr11 | 117795411 | 117795613 | + | 10.2 | 0.708 | Intergenic | Intergenic | 35168 | NM_007707 | 12702 | Mm.3468 | NM_007707 | ENSMUSG00000053113 | Socs3 | Cis3|Cish3|EF-10|Ef10|SSI-3|Ssi3 | suppressor of cytokine signaling 3
chr6-418 | chr6 | 136480411 | 136480613 | + | 10.2 | 0.833 | [NAME] (NM_019426, intron 1 of 14) | [NAME] (NM_019426, intron 1 of 14) | 13140 | NM_019426 | 54343 | Mm.489690 | NM_019426 | ENSMUSG00000030213 | Atf7ip | 2610204M12Rik|AM|Mcaf1 | activating transcription factor 7 interacting protein
chr1-174 | chr1 | 36530497 | 36530699 | + | 10.2 | 0.778 | [NAME] (NM_033570, intron 1 of 6) | [NAME] (NM_033570, intron 1 of 6) | 2156 | NM_033570 | 94220 | Mm.489810 | NM_033570 | ENSMUSG00000037408 | Cnnm4 | 5430430O18Rik|Acdp4 | cyclin M4
chr15-117 | chr15 | 99377116 | 99377318 | + | 10.2 | 0.765 | Intergenic | Intergenic | -18769 | NM_001038658 | 72393 | Mm.39760 | NM_001038658 | ENSMUSG00000023011 | Faim2 | 2900002L20Rik|AI854036|Lfg|NMP25|lifeguard|mKIAA0950 | Fas apoptotic inhibitory molecule 2
chr15-95 | chr15 | 81307072 | 81307274 | + | 10.2 | 0.812 | TTS (NM_019712) | TTS (NM_019712) | 10427 | NM_019712 | 56438 | Mm.29405 | NM_019712 | ENSMUSG00000022400 | Rbx1 | 1500002P15Rik|AA517855|ROC1 | ring-box 1
chr8-718 | chr8 | 65643191 | 65643393 | + | 10.2 | 0.75 | [NAME] (NM_023689, intron 5 of 11) | Lx|LINE|L1 | 213150 | NM_023689 | 72902 | Mm.334552 | NM_001252620 | ENSMUSG00000054162 | Spock3 | 2900045C01Rik|AI428471|KIAA4039|mKIAA4039 | sparc/osteonectin, cwcv and [NAME]-like domains proteoglycan 3
chr12-791 | chr12 | 104382557 | 104382759 | + | 10.2 | 0.684 | intron (NM_001081017, intron 38 of 48) | intron (NM_001081017, intron 38 of 48) | 97698 | NM_133364 | 170952 | Mm.217019 | NM_178023 | ENSMUSG00000041669 | Prima1 | [NAME] | proline rich membrane anchor 1
chr19-94 | chr19 | 10744507 | 10744709 | + | 10.2 | 0.722 | [NAME] (NM_021453, intron 6 of 8) | ID_B1|SINE|B4 | 7953 | NM_021453 | 58803 | Mm.34037 | NM_021453 | ENSMUSG00000024738 | Pga5 | 1110035E17Rik|Pepf | pepsinogen 5, group I
chr17-225 | chr17 | 47810078 | 47810280 | + | 10.2 | 0.75 | exon (NM_198421, exon 3 of 7) | exon (NM_198421, exon 3 of 7) | -14380 | NR_045945 | 100415787 | Mm.487352 | NR_045945 |  | Gm14872 | OTTMUSG00000018355 | predicted gene 14872
chr14-165 | chr14 | 117646939 | 117647141 | + | 10.2 | 0.833 | [NAME] (NM_011821, intron 2 of 8) | [NAME] (NM_011821, intron 2 of 8) | 322503 | NM_011821 | 23888 | Mm.440025 | NM_001079844 | ENSMUSG00000058571 | Gpc6 | 6720429C22Rik|AI480529|MGC32221 | glypican 6
chr4-251 | chr4 | 101216347 | 101216549 | + | 10.2 | 0.765 | intron (NM_198412, intron 2 of 19) | intron (NM_198412, intron 2 of 19) | -6751 | NM_001164583 | 72685 | Mm.76494 | NM_001164583 | ENSMUSG00000028528 | Dnajc6 | 2810027M23Rik|mKIAA0473 | DnaJ (Hsp40) homolog, subfamily C, member 6
[NAME] | chr14 | 98742201 | 98742403 | + | 10.2 | 0.933 | Intergenic | Intergenic | -173540 | NM_007826 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
[NAME] | chr14 | 99501447 | 99501649 | + | 10.2 | 0.667 | intron (NM_029320, intron 2 of 17) | RSINE1|SINE|B4 | -2559 | NM_028315 | 72662 | Mm.163339 | NM_028315 | ENSMUSG00000033166 | Dis3 | 2810028N01Rik | DIS3 mitotic control homolog (S. cerevisiae)
chr4-230 | chr4 | 43669480 | 43669682 | + | 10.2 | 0.824 | promoter-TSS (NM_026871) | promoter-TSS (NM_026871) | -264 | NM_026871 | 68917 | Mm.25285 | NM_026871 | ENSMUSG00000028470 | Hint2 | 1190005L05Rik | histidine triad nucleotide binding protein 2
chr17-148 | chr17 | 24342984 | 24343186 | + | 10.2 | 0.824 | promoter-TSS (NM_173186) | promoter-TSS (NM_173186) | -578 | NM_001163850 | 224617 | Mm.301585 | NM_001163847 | ENSMUSG00000036473 | Tbc1d24 | 9630033P11|C530046L02Rik|mKIAA1171 | TBC1 domain family, member 24
chr2-74 | chr2 | 9535606 | 9535808 | + | 10.2 | 0.765 | Intergenic | Lx5|LINE|L1 | 264520 | NM_008091 | 14462 | Mm.313866 | NM_008091 | ENSMUSG00000015619 | Gata3 | Gata-3 | GATA binding protein 3
chr6-454 | chr6 | 145052679 | 145052881 | + | 10.2 | 0.684 | Intergenic | B3|SINE|B2 | -17479 | NM_008511 | 16970 | Mm.843 | NM_008511 | ENSMUSG00000030263 | Lrmp | AI553456|D6Int3|D6Int4|D6Int5|D6Int7|D6Int8|Jaw1 | lymphoid-restricted membrane protein
chr12-715 | chr12 | 93109170 | 93109372 | + | 10.2 | 0.684 | Intergenic | Intergenic | -21674 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr4-360 | chr4 | 133148900 | 133149102 | + | 10.2 | 0.667 | Intergenic | Intergenic | 8713 | NM_133884 | 100210 | Mm.274001 | NM_133884 | ENSMUSG00000028848 | Gpn2 | AI838661|Atpbd1b|R74630|RP23-137L22.10 | GPN-loop GTPase 2
chr4-348 | chr4 | 126076777 | 126076979 | + | 10.2 | 0.938 | [NAME] (NM_153402, intron 5 of 18) | Lx8|LINE|L1 | 29908 | NM_153402 | 214150 | Mm.483093 | NM_153402 | ENSMUSG00000028842 | Eif2c3 | AW048688|Ago3|C130014L07Rik | eukaryotic translation initiation factor 2C, 3
chr2-110 | chr2 | 80417185 | 80417387 | + | 10.2 | 0.882 | [NAME] (NM_016965, intron 1 of 30) | B4|SINE|B4 | 3836 | NM_016965 | 50884 | Mm.25203 | NM_016965 | ENSMUSG00000027002 | Nckap1 | C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19 | NCK-associated protein 1
chr4-289 | chr4 | 109979235 | 109979437 | + | 10.2 | 0.8 | [NAME] (NM_001163397, intron 1 of 5) | [NAME] (NM_001163397, intron 1 of 5) | -19220 | NM_001038698 | 15572 | Mm.3970 | NM_001038698 | ENSMUSG00000028546 | Elavl4 | Elav|Hud|PNEM | ELAV ([NAME], abnormal vision, [NAME] D)
chr11-266 | chr11 | 33769449 | 33769651 | + | 10.2 | 0.765 | [NAME] intron 1 of 7) | [NAME] intron 1 of 7) | -25965 | NM_001190885 | 70357 | Mm.252514 | NM_001190885 | ENSMUSG00000053519 | Kcnip1 | 2900046L02Rik|3202002F18Rik|AI842357|AW494471|KCHIP1|Kchip1.2 | Kv channel-interacting protein 1
chr7-162 | chr7 | 71034760 | 71034962 | + | 10.2 | 0.588 | 3' UTR (NM_021366, exon 2 of 2) | 3' UTR (NM_021366, exon 2 of 2) | -26882 | NM_001256311 | 381994 | Mm.425466 | NM_001256311 |  | E030018B13Rik | Gm1697 | [NAME] gene
chr6-435 | chr6 | 141440452 | 141440654 | + | 10.2 | 0.737 | [NAME] (NM_018779, intron 14 of 15) | [NAME] (NM_018779, intron 14 of 15) | -32354 | NM_001177772 | 58807 | Mm.284495 | NM_001177772 | ENSMUSG00000030235 | Slco1c1 | MGC90655|OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14 | solute carrier organic anion transporter family, member 1c1
chr10-148 | chr10 | 127000214 | 127000416 | + | 10.2 | 0.565 | intron (NM_008512, intron 42 of 88) | intron (NM_008512, intron 42 of 88) | -28700 | NM_183297 | 104080 | Mm.437200 | NM_183297 | ENSMUSG00000040258 | Nxph4 | 1110036M10Rik|AI851051 | [NAME] 4
chr7-205 | chr7 | 152035513 | 152035715 | + | 10.2 | 0.636 | Intergenic | Intergenic | 11097 | NM_008007 | 14174 | Mm.4947 | NM_008007 | ENSMUSG00000031074 | Fgf3 | Fgf-3|Int-2|Int-P | fibroblast growth factor 3
chr4-374 | chr4 | 145141609 | 145141811 | + | 10.2 | 0.65 | Intergenic | B1F1|SINE|Alu | -65339 | NM_001205101 | 433801 | Mm.276881 | NM_001205101 |  | Gm13212 | OTTMUSG00000010965 | predicted gene 13212
chr6-399 | chr6 | 128804297 | 128804499 | + | 10.2 | 0.65 | intron (NM_001254946, intron 2 of 2) | intron (NM_001254946, intron 2 of 2) | -28065 | NM_030599 | 80782 | Mm.480764 | NM_030599 | ENSMUSG00000079298 | Klrb1b | [NAME] | killer cell lectin-like receptor subfamily B member 1B
chr8-621 | chr8 | 9343068 | 9343270 | + | 10.2 | 0.667 | intron (NM_173446, intron 1 of 2) | intron (NM_173446, intron 1 of 2) | -210881 | NR_045854 | 71249 | Mm.158635 | NR_045854 |  | 4933430N04Rik | - | RIKEN cDNA 4933430N04 gene
chr17-229 | chr17 | 51881910 | 51882112 | + | 10.2 | 0.737 | exon (NM_009122, exon 10 of 11) | exon (NM_009122, exon 10 of 11) | 69368 | NM_001163630 | 20230 | Mm.311655 | NM_001163630 | ENSMUSG00000023927 | Satb1 | 2610306G12Rik|AW413156 | special AT-rich sequence binding protein 1
chr1-221 | chr1 | 158868772 | 158868974 | + | 10.2 | 0.824 | [NAME] (NM_001159965, intron 1 of 19) | [NAME] (NM_001159965, intron 1 of 19) | 645 | NM_001159966 | 78255 | Mm.28376 | NM_001159965 | ENSMUSG00000026594 | Ralgps2 | 1810020P17Rik|2210408F11Rik|4921528G01Rik|9130014M22Rik|AU043409|AW046161 | [NAME] with PH domain and SH3 binding motif 2
chr5-108 | chr5 | 24157309 | 24157511 | + | 10.2 | 0.722 | Intergenic | Intergenic | 6139 | NR_003953 | 72252 | Mm.87446 | NR_003953 |  | 1700022A21Rik | - | glycerol-3-phosphate dehydrogenase 1-like pseudogene
chr3-122 | chr3 | 135210193 | 135210395 | + | 10.2 | 0.706 | intron (NM_027288, intron 9 of 16) | intron (NM_027288, intron 9 of 16) | 61719 | NM_027288 | 110173 | Mm.280536 | NM_027288 | ENSMUSG00000028164 | Manba | 2410030O07Rik|B930014J03Rik|Bmn | mannosidase, beta A, lysosomal
chr9-140 | chr9 | 63247366 | 63247568 | + | 10.2 | 0.765 | promoter-TSS (NM_027090) | promoter-TSS (NM_027090) | -416 | NM_027090 | 69478 | Mm.113942 | NM_027090 | ENSMUSG00000032403 | 2300009A05Rik | - | RIKEN cDNA 2300009A05 gene
chr11-363 | chr11 | 115021456 | 115021658 | + | 10.2 | 0.65 | [NAME] (NM_001163753, intron 6 of 8) | [NAME] (NM_001163753, intron 6 of 8) | -3098 | NM_012030 | 26941 | Mm.27842 | NM_012030 | ENSMUSG00000020733 | Slc9a3r1 | EBP-50|MGC95776|NHE-RF|NHERF-1|NHERF1 | solute carrier family 9 (sodium/hydrogen exchanger), member 3 regulator 1
chr17-219 | chr17 | 36245247 | 36245449 | + | 10.2 | 0.611 | Intergenic | ETnERV2-int|LTR|ERVK | 13032 | NM_010395 | 15024 | Mm.426031 | NM_010395 | ENSMUSG00000079491 | H2-T10 | H-2T10 | histocompatibility 2, T region locus 10
chr8-720 | chr8 | 72275398 | 72275600 | + | 10.2 | 0.684 | Intergenic | ORR1D1|LTR|MaLR | -1638 | NM_001200023 | 620419 | Mm.460423 | NM_001200023 | ENSMUSG00000092260 | Zfp963 | - | zinc finger protein 963
chr4-249 | chr4 | 99320645 | 99320847 | + | 10.2 | 0.938 | Intergenic | Intergenic | -2244 | NM_010425 | 15221 | Mm.4758 | NM_010425 | ENSMUSG00000067261 | Foxd3 | CWH3|Genesis|Hfh2 | forkhead box D3
chr7-137 | chr7 | 26376170 | 26376372 | + | 10.2 | 0.722 | Intergenic | Lx5|LINE|L1 | 24640 | NM_001039243 | 632778 | Mm.423112 | NM_001039243 | ENSMUSG00000074261 | Gm7092 | EG632778|Kseg1 | predicted gene 7092
chr1-200 | chr1 | 91852937 | 91853139 | + | 10.2 | 0.75 | [NAME] (NM_139152, intron 4 of 5) | [NAME] (NM_139152, intron 4 of 5) | -25287 | NM_010262 | 14472 | Mm.204730 | NM_010262 | ENSMUSG00000034486 | Gbx2 | D130058E05Rik|Gbx-2|MMoxA|Stra7 | gastrulation brain homeobox 2
chr3-107 | chr3 | 130103688 | 130103890 | + | 10.2 | 0.632 | [NAME] (NM_198711, intron 4 of 34) | [NAME] (NM_198711, intron 4 of 34) | -216577 | NM_001163587 | 71760 | Mm.29125 | NM_001163587 | ENSMUSG00000019232 | Agxt2l1 | 1300019H02Rik|AI195447 | alanine-glyoxylate aminotransferase 2-like 1
chr12-737 | chr12 | 100972096 | 100972298 | + | 10.2 | 0.706 | [NAME] (NM_030172, intron 5 of 5) | B4A|SINE|B4 | -106013 | NR_045288 | 73457 | Mm.383439 | NR_045288 |  | 1700064M15Rik | - | RIKEN cDNA 1700064M15 gene
chr7-132 | chr7 | 17022149 | 17022351 | + | 10.2 | 0.722 | 3' UTR (NM_198631, exon 14 of 14) | 3' UTR (NM_198631, exon 14 of 14) | -15878 | NM_026938 | 69094 | Mm.29633 | NM_026938 | ENSMUSG00000019158 | Tmem160 | 1810008O21Rik | [NAME] 160
chr3-98 | chr3 | 106082421 | 106082623 | + | 10.2 | 0.7 | Intergenic | L1Md_F2|LINE|L1 | -60125 | NM_145126 | 104183 | Mm.425140 | NM_145126 | ENSMUSG00000063779 | Chi3l4 | Ym2 | chitinase 3-like 4
chr18-51 | chr18 | 11052911 | 11053113 | + | 10.2 | 0.875 | [NAME] (NM_010258, intron 1 of 6) | [NAME] (NM_010258, intron 1 of 6) | 504 | NM_010258 | 14465 | Mm.329287 | NM_010258 | ENSMUSG00000005836 | Gata6 | AA410133|GATA-6 | GATA binding protein 6
chr8-691 | chr8 | 23840848 | 23841050 | + | 10.2 | 0.765 | Intergenic | RMER15|LTR|ERVL | -23894 | NM_001159774 | 16150 | Mm.277886 | NM_001159774 | ENSMUSG00000031537 | Ikbkb | [NAME] | inhibitor of kappaB kinase beta
chr8-824 | chr8 | 97398342 | 97398544 | + | 10.2 | 0.789 | [NAME], intron 1 of 8) | [NAME], intron 1 of 8) | 1769 | NM_053246 | 114255 | Mm.203949 | NM_053246 | ENSMUSG00000040631 | Dok4 | - | docking protein 4
chr4-363 | chr4 | 134166306 | 134166508 | + | 10.2 | 0.647 | intron (NM_207237, intron 2 of 11) | B4|SINE|B4 | -58326 | NM_029100 | 74777 | Mm.29773 | NM_029100 | ENSMUSG00000050989 | Sepn1 | 1110019I12Rik|AI414492 | selenoprotein N, 1
chr11-341 | chr11 | 100862323 | 100862525 | + | 10.2 | 0.824 | Intergenic | RMER10A|LTR|ERVL | -8342 | NM_016920 | 11975 | Mm.475829 | NM_001243049 | ENSMUSG00000019302 | Atp6v0a1 | AA959968|ATP6a1|Atp6n1|Atp6n1a|Atpv0a1|Vpp-1|Vpp1 | ATPase, H+ transporting, lysosomal V0 subunit A1
chr11-283 | chr11 | 68185890 | 68186092 | + | 10.2 | 0.765 | intron (NM_008744, intron 2 of 6) | intron (NM_008744, intron 2 of 6) | 14337 | NM_008744 | 18208 | Mm.39095 | NM_008744 | ENSMUSG00000020902 | Ntn1 | AI561871|BC019633|Netrin-1 | netrin 1
chr11-352 | chr11 | 106509735 | 106509937 | + | 10.2 | 0.778 | Intergenic | Intergenic | -35592 | NM_198292 | 21763 | Mm.102407 | NM_198292 | ENSMUSG00000040548 | Tex2 | 4930568E07Rik|AI553404|Def-5|Taz4 | testis expressed gene 2
chr5-180 | chr5 | 152004249 | 152004451 | + | 10.2 | 0.75 | Intergenic | ORR1D2|LTR|MaLR | -11582 | NM_146258 | 243362 | Mm.209272 | NM_001163493 | ENSMUSG00000016128 | Stard13 | DLC2|GT650|MGC38133 | StAR-related lipid transfer (START) domain containing 13
chr16-73 | chr16 | 11433671 | 11433873 | + | 10.2 | 0.875 | intron (NM_028964, intron 11 of 20) | intron (NM_028964, intron 11 of 20) | 110775 | NM_028964 | 74478 | Mm.325831 | [NAME] | ENSMUSG00000071669 | Snx29 | 4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a | sorting nexin 29
chr8-773 | chr8 | 88758730 | 88758932 | + | 10.2 | 0.722 | Intergenic | RMER1B|Other|Other | 331658 | NM_172912 | 244562 | Mm.67485 | NM_172912 | ENSMUSG00000036872 | Abcc12 | 4930467B22Rik|MRP9 | ATP-binding cassette, sub-family C (CFTR/MRP), member 12
chr12-714 | chr12 | 93017702 | 93017904 | + | 10.2 | 0.789 | [NAME] (NM_175367, intron 1 of 6) | [NAME] (NM_175367, intron 1 of 6) | 7073 | NM_175367 | 108800 | Mm.23125 | NM_175367 | ENSMUSG00000020961 | Ston2 | 4933401N24Rik|AI425999|AW544599 | stonin 2
chr19-91 | chr19 | 7236892 | 7237094 | + | 10.2 | 0.789 | [NAME], intron 3 of 10) | [NAME], intron 3 of 10) | 43781 | NM_134150 | 107260 | Mm.203921 | NM_134150 | ENSMUSG00000024767 | Otub1 | AI850305 | OTU domain, ubiquitin aldehyde binding 1
chr4-355 | chr4 | 129799102 | 129799304 | + | 10.2 | 0.524 | [NAME] (NM_026441, intron 2 of 4) | [NAME] (NM_026441, intron 2 of 4) | 14403 | NM_026441 | 67898 | Mm.20818 | NM_026441 | ENSMUSG00000028779 | Pef1 | 2600002E23Rik|Peflin | penta-EF hand domain containing 1
chr15-85 | chr15 | 77712433 | 77712635 | + | 10.2 | 0.722 | Intergenic | Intergenic | -39989 | NM_022410 | 17886 | Mm.29677 | NM_022410 | [NAME] | [NAME] | C80049|D0Jmb2|E030044M24Rik|Fltn|Myhn-1|Myhn1|NMHC II-A|NMHCIIA|NMMHC II-a|NMMHC-A|NMMHC-IIA|TU72.6 | [NAME], heavy polypeptide 9, non-muscle
chr13-91 | chr13 | 49393188 | 49393390 | + | 10.2 | 0.684 | 5' UTR (NM_015759, exon 2 of 18) | 5' UTR (NM_015759, exon 2 of 18) | 11288 | NM_015759 | 30938 | Mm.291089 | NM_015759 | ENSMUSG00000037946 | Fgd3 | 5830461L01Rik|ZFYVE5 | FYVE, [NAME] and PH domain containing 3
chr7-155 | chr7 | 51895950 | 51896152 | + | 10.2 | 0.875 | intron (NM_028021, intron 10 of 39) | intron (NM_028021, intron 10 of 39) | 24822 | NM_028021 | 71960 | Mm.158289 | NM_028021 | ENSMUSG00000030739 | Myh14 | 2400004E04Rik|II-C|NHMCII|NMHC II-C | [NAME], heavy polypeptide 14
chr1-236 | chr1 | 184837264 | 184837466 | + | 10.2 | 0.722 | Intergenic | Intergenic | -47554 | NM_016928 | 53791 | Mm.116894 | NM_016928 | ENSMUSG00000079164 | Tlr5 | - | toll-like receptor 5
chr5-157 | chr5 | 125321087 | 125321289 | + | 10.2 | 0.75 | [NAME] (NM_144819, intron 1 of 3) | [NAME] (NM_144819, intron 1 of 3) | 21403 | NM_144819 | 215707 | Mm.389693 | NM_144819 | ENSMUSG00000037979 | Ccdc92 | AW050178|D5Bwg0834e|MGC38387 | coiled-coil domain containing 92
chr4-322 | chr4 | 117970037 | 117970239 | + | 10.2 | 0.833 | Intergenic | Intergenic | -6136 | NM_011213 | 19268 | Mm.29855 | NM_011213 | ENSMUSG00000033295 | Ptprf | AA591035|LAR|LARS|RPTP-LAR | protein tyrosine phosphatase, receptor type, F
chr8-878 | chr8 | 114108219 | 114108421 | + | 10.2 | 0.684 | [NAME] (NM_001168623, intron 1 of 4) | B3|SINE|B2 | 45902 | NM_027570 | 52815 | Mm.271578 | NM_027570 | ENSMUSG00000031958 | Ldhd | 4733401P21Rik|D8Bwg1320e | lactate dehydrogenase D
[NAME] | chr14 | 100240715 | 100240917 | + | 10.2 | 0.75 | Intergenic | MLT1E|LTR|MaLR | 308199 | NM_010636 | 16597 | Mm.458816 | NM_010636 | ENSMUSG00000072294 | Klf12 | 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik | Kruppel-like factor 12
chr7-176 | chr7 | 106427870 | 106428072 | + | 10.2 | 0.895 | intron (NM_001043355, intron 1 of 2) | intron (NM_001043355, intron 1 of 2) | 11115 | NM_001043355 | 17760 | Mm.154087 | NM_001043355 | ENSMUSG00000055407 | [NAME] | 2810411E12Rik|Map-6|Map6|STOP | microtubule-associated protein 6
chr8-994 | chr8 | 126959853 | 126960055 | + | 10.2 | 0.737 | Intergenic | ID_B1|SINE|B4 | -2118 | NM_171824 | 209966 | Mm.234233 | NM_171824 | ENSMUSG00000050751 | Pgbd5 | 2900019M05Rik|AI854313 | piggyBac transposable element derived 5
chr6-411 | chr6 | 135014739 | 135014941 | + | 10.2 | 0.722 | promoter-TSS (NM_181444) | promoter-TSS (NM_181444) | -840 | NM_181444 | 232431 | Mm.477015 | NM_181444 | ENSMUSG00000046733 | Gprc5a | Rai3|Raig1 | G protein-coupled receptor, family C, group 5, member A
chr2-145 | chr2 | 164343411 | 164343613 | + | 10.2 | 0.812 | Intergenic | Intergenic | 20487 | NM_133779 | 78928 | Mm.28228 | NM_133779 | ENSMUSG00000017721 | Pigt | 2510012P17Rik|4930534E15Rik|CGI-06|NDAP|Ndap7 | phosphatidylinositol glycan anchor biosynthesis, class T
chr8-747 | chr8 | 85573049 | 85573251 | + | 10.2 | 0.667 | [NAME] (NM_177378, intron 6 of 6) | [NAME] (NM_177378, intron 6 of 6) | -116101 | NM_001111304 | 71310 | Mm.24031 | NM_001111304 | ENSMUSG00000031709 | Tbc1d9 | 4933431N12Rik|AI847101|AW490653|C76116 | TBC1 domain family, member 9
chr17-154 | chr17 | 25971042 | 25971244 | + | 10.2 | 0.524 | promoter-TSS (NM_019719) | promoter-TSS (NM_019719) | -837 | NM_019719 | 56424 | Mm.277599 | NM_019719 | ENSMUSG00000039615 | Stub1 | 0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip | STIP1 homology and U-Box containing protein 1
chr8-852 | chr8 | 108911775 | 108911977 | + | 10.2 | 0.56 | Intergenic | Intergenic | -27363 | NM_011764 | 22751 | Mm.295582 | NM_011764 | ENSMUSG00000031907 | Zfp90 | 6430515L01Rik|KRAB17|NK10|Zfp64|Zfp83|mKIAA1954 | zinc finger protein 90
chr9-135 | chr9 | 58421948 | 58422150 | + | 10.2 | 0.778 | Intergenic | Intergenic | -7998 | NM_009145 | 20320 | Mm.15125 | NM_009145 | ENSMUSG00000032336 | Nptn | AW554172|Sdfr1 | neuroplastin
chr4-232 | chr4 | 44642863 | 44643065 | + | 10.2 | 0.556 | [NAME] (NM_008782, intron 6 of 9) | [NAME] (NM_008782, intron 6 of 9) | 80348 | NM_008782 | 18507 | Mm.439659 | NM_008782 | ENSMUSG00000014030 | Pax5 | BSAP|EBB-1|KLP|Pax-5 | paired box gene 5
chr7-140 | chr7 | 28151060 | 28151262 | + | 10.2 | 0.684 | [NAME] (NM_032610, intron 29 of 35) | B4|SINE|B4 | -10134 | NM_138676 | 192192 | Mm.470999 | NM_138676 | ENSMUSG00000089832 | Shkbp1 | B930062H15Rik|Sb1 | Sh3kbp1 binding protein 1
chr8-897 | chr8 | 119777021 | 119777223 | + | 10.2 | 0.688 | Intergenic | Intergenic | -3797 | NM_001163262 | 74440 | Mm.233181 | NM_001163262 | ENSMUSG00000034390 | 4933407C03Rik | 5830471E12Rik|AI314065|AI464126|Cmip | RIKEN cDNA 4933407C03 gene
chr6-255 | chr6 | 3896465 | 3896667 | + | 10.2 | 0.944 | Intergenic | Intergenic | 21788 | NM_009364 | 21789 | Mm.25612 | NM_009364 | ENSMUSG00000029664 | Tfpi2 | AV000670|PP5/TFPI-2 | tissue factor pathway inhibitor 2
chr16-75 | chr16 | 15322374 | 15322576 | + | 10.2 | 0.812 | Intergenic | Intergenic | 272136 | NM_001159351 | 70620 | Mm.390775 | NM_001159351 | ENSMUSG00000022674 | Ube2v2 | 1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MGC102399|MMS2 | ubiquitin-conjugating enzyme E2 variant 2
chr1-179 | chr1 | 58983589 | 58983791 | + | 10.2 | 0.812 | [NAME] (NM_172406, intron 3 of 15) | L1VL2|LINE|L1 | 46636 | NM_172406 | 70827 | Mm.222887 | NM_172406 | ENSMUSG00000026028 | Trak2 | 2900022D04Rik|4733401O11Rik|AI480836|AW046271|Als2cr3|CALS-C|GRIF-1|GRIF1|OIP98|mKIAA0549 | trafficking protein, [NAME] binding 2
chr5-164 | chr5 | 136559453 | 136559655 | + | 10.2 | 0.812 | promoter-TSS (NM_133914) | promoter-TSS (NM_133914) | -232 | NM_133914 | 54153 | Mm.290655 | NM_001039103 | ENSMUSG00000004952 | Rasa4 | AA793972|AW112107|BB079060|CAPRI|GAPL|KIAA0538|mKIAA0538 | RAS p21 protein activator 4
chr11-271 | chr11 | 54717996 | 54718198 | + | 10.2 | 0.765 | intron (NM_008161, intron 1 of 4) | MIR3|SINE|MIR | 1741 | NM_008161 | 14778 | Mm.200916 | NM_008161 | ENSMUSG00000018339 | Gpx3 | AA960521|EGPx|GPx|GSHPx-3|GSHPx-P | glutathione peroxidase 3
chr12-695 | chr12 | 88472405 | 88472607 | + | 10.2 | 0.875 | [NAME] (NM_153415, intron 6 of 20) | [NAME] (NM_153415, intron 6 of 20) | -15609 | NM_001252555 | 14874 | Mm.29652 | NM_001252555 | ENSMUSG00000021033 | Gstz1 | MAAI | glutathione transferase zeta 1 (maleylacetoacetate isomerase)
chr17-186 | chr17 | 30425168 | 30425370 | + | 10.2 | 0.706 | [NAME] (NM_172618, intron 8 of 11) | ORR1D2|LTR|MaLR | 107856 | NR_030688 | 623169 | Mm.440508 | NR_030688 |  | [NAME] | EG623169 | ribosomal protein S17 pseudogene
chr9-133 | chr9 | 58159346 | 58159548 | + | 10.2 | 0.778 | [NAME] (NM_010729, intron 1 of 6) | [NAME] (NM_010729, intron 1 of 6) | 1572 | NM_010729 | 16949 | Mm.250492 | NM_010729 | ENSMUSG00000032334 | Loxl1 | Loxl|MGC106801 | lysyl oxidase-like 1
chr4-319 | chr4 | 117345788 | 117345990 | + | 10.2 | 0.765 | [NAME] (NM_080469, intron 8 of 8) | [NAME] (NM_080469, intron 8 of 8) | 8941 | NM_023178 | 66233 | Mm.29142 | NM_023178 | ENSMUSG00000009640 | Dmap1 | 1500016M21Rik|DNMAP1|DNMTAP1|Dmtap1|mKIAA1425 | DNA methyltransferase 1-associated protein 1
chr3-63 | chr3 | 31103661 | 31103863 | + | 10.2 | 0.667 | 3' UTR (NM_172861, exon 8 of 8) | 3' UTR (NM_172861, exon 8 of 8) | 54920 | NM_008770 | 18417 | Mm.4425 | NM_008770 | ENSMUSG00000037625 | Cldn11 | Claudin-11|Claudin11|Osp|Otm | claudin 11
chr18-72 | chr18 | 63143860 | 63144062 | + | 10.2 | 0.737 | [NAME] (NM_028017, intron 5 of 11) | [NAME] (NM_028017, intron 5 of 11) | 6391 | NM_028017 | 108123 | Mm.292687 | NM_028017 | ENSMUSG00000024581 | [NAME] | 2400003O04Rik|SNARE | N-ethylmaleimide sensitive fusion protein attachment protein gamma
chr11-293 | chr11 | 70244166 | 70244368 | + | 10.2 | 0.933 | Intergenic | PB1D9|SINE|Alu | -1888 | NM_145429 | 216869 | [NAME] | NM_145429 | ENSMUSG00000060216 | Arrb2 | AI326910|AW122872|RP23-42P20.7 | arrestin, beta 2
chr5-112 | chr5 | 31251924 | 31252126 | + | 10.2 | 0.765 | promoter-TSS (NM_021304) | promoter-TSS (NM_021304) | -414 | NR_003522 | 57742 | Mm.389615 | NM_021304 |  | Abhd1 | LABH-1|LABH1 | abhydrolase domain containing 1
chr17-241 | chr17 | 83563584 | 83563786 | + | 10.2 | 0.75 | Intergenic | PB1D10|SINE|Alu | -50938 | NM_134117 | 106522 | Mm.311974 | NM_134117 | ENSMUSG00000024247 | [NAME] | AI115348|AW548124|Adtk1|ESTM17|MAd1|MGC99930|Sgk493|Vlk|X83346 | protein kinase domain containing, cytoplasmic
chr4-386 | chr4 | 151473412 | 151473614 | + | 10.2 | 0.682 | [NAME] (NM_001004156, intron 1 of 19) | [NAME] (NM_001004156, intron 1 of 19) | 2685 | NM_001004156 | 269608 | Mm.486442 | NM_001004156 | ENSMUSG00000039713 | Plekhg5 | BC023181|Syx|mKIAA0720 | pleckstrin homology domain containing, family G (with RhoGef domain) member 5
chr18-81 | chr18 | 78252235 | 78252437 | + | 10.2 | 0.875 | [NAME] (NM_001101038, intron 1 of 5) | [NAME] (NM_001101038, intron 1 of 5) | 1671 | NM_001101038 | 620235 | Mm.35607 | NM_001101038 | ENSMUSG00000091055 | Siglec15 | Cd33l3|EG620235|SIGLEC-I | sialic acid binding Ig-like lectin 15
chr6-389 | chr6 | 127717483 | 127717685 | + | 10.2 | 0.636 | [NAME] intron 1 of 9) | [NAME] intron 1 of 9) | 1593 | NM_201371 | 381813 | Mm.39750 | NM_201371 | ENSMUSG00000030350 | Prmt8 | Hrmt1l3|Hrmt1l4 | protein arginine N-methyltransferase 8
chr9-112 | chr9 | 22502522 | 22502724 | + | 10.2 | 0.875 | [NAME] (NM_181316, intron 18 of 21) | ORR1D2|LTR|MaLR | 222464 | NM_178415 | 319845 | Mm.176725 | NM_178415 | ENSMUSG00000035919 | Bbs9 | E130103I17Rik | [NAME] syndrome 9 (human)
[NAME] | chr14 | 20571437 | 20571639 | + | 10.2 | 0.765 | exon (NM_008695, exon 2 of 21) | exon (NM_008695, exon 2 of 21) | 1059 | NM_008695 | 18074 | Mm.20348 | NM_008695 | ENSMUSG00000021806 | Nid2 | AW547149|Ly111|NID-2|entactin-2|nidogen-2 | nidogen 2
chr6-309 | chr6 | 118546387 | 118546589 | + | 10.2 | 0.765 | [NAME] (NM_001256002, intron 46 of 47) | [NAME] (NM_001256002, intron 46 of 47) | -34214 | NM_001081112 | 232339 | Mm.276116 | NM_001081112 | ENSMUSG00000007827 | Ankrd26 | 5730521P14Rik|BC008111|mKIAA1074 | ankyrin repeat domain 26
chr4-395 | chr4 | 155507954 | 155508156 | + | 10.2 | 0.8 | TTS (NM_001220499) | TTS (NM_001220499) | 1776 | NM_001220499 | 100045778 | Mm.435733 | NM_001220499 |  | 9930005F22Rik | Rnf223 | RIKEN cDNA 9930005F22 gene
chr3-91 | chr3 | 102000172 | 102000374 | + | 10.2 | 0.611 | [NAME] (NM_177545, intron 2 of 7) | [NAME] (NM_177545, intron 2 of 7) | 7613 | NM_001165951 | 229658 | Mm.118004 | NM_001165951 | ENSMUSG00000027860 | Vangl1 | [NAME] | vang-like 1 (van gogh, Drosophila)
chr13-103 | chr13 | 62182325 | 62182527 | + | 10.2 | 0.5 | Intergenic | Lx2A1|LINE|L1 | -48824 | NM_001039239 | 630579 | Mm.440905 | NM_001039239 | ENSMUSG00000074867 | [NAME] | EG630579|Gm7036|MGC74346 | zinc finger protein 80
chr2-120 | chr2 | 119826997 | 119827199 | + | 10.2 | 0.765 | intron (NM_011941, intron 2 of 29) | intron (NM_011941, intron 2 of 29) | -26121 | NM_001114637 | 433466 | Mm.482417 | NM_001114637 | ENSMUSG00000033852 | Jmjd7 | MGC106779 | [NAME] 7
chr13-96 | chr13 | 54679729 | 54679931 | + | 10.2 | 0.696 | [NAME] (NM_019968, intron 2 of 3) | [NAME] (NM_019968, intron 2 of 3) | 3456 | NM_019968 | 56795 | Mm.482193 | NM_019968 | ENSMUSG00000025870 | Arl10 | Arl10a|Arm1|MGC144317 | ADP-ribosylation factor-like 10
chr11-304 | chr11 | 77872066 | 77872268 | + | 10.2 | 0.75 | exon (NM_008028, exon 10 of 12) | exon (NM_008028, exon 10 of 12) | -14340 | NR_029556 | 387162 |  | NR_029556 |  | Mir144 | Mirn144|mmu-mir-144 | microRNA 144
chr19-109 | chr19 | 44377611 | 44377813 | + | 10.2 | 0.778 | promoter-TSS (NR_039574) | promoter-TSS (NR_039574) | 51 | NR_039574 | 100628619 |  | NR_039574 |  | Mir5114 | mmu-mir-5114|mu-mir-5114 | microRNA 5114
chr17-189 | chr17 | 30664022 | 30664224 | + | 10.2 | 0.778 | [NAME] (NM_172618, intron 3 of 11) | [NAME] (NM_172618, intron 3 of 11) | 49109 | NM_172618 | 224671 | Mm.41220 | NM_027060 | ENSMUSG00000062202 | Btbd9 | 1700023F20Rik|4930402L05|AI464421 | BTB (POZ) domain containing 9
chr9-125 | chr9 | 44947067 | 44947269 | + | 10.2 | 0.706 | promoter-TSS (NM_001013390) | promoter-TSS (NM_001013390) | 43 | [NAME] | 399548 | Mm.335112 | [NAME] | [NAME] | Scn4b | Gm1471 | sodium channel, type IV, beta
chr6-375 | chr6 | 125746364 | 125746566 | + | 10.2 | 0.682 | [NAME] intron 7 of 25) | [NAME] intron 7 of 25) | 106028 | NM_153589 | 243634 | Mm.333398 | NM_153589 | ENSMUSG00000038115 | Ano2 | [NAME] | anoctamin 2
[NAME] | chr14 | 67856277 | 67856479 | + | 10.2 | 0.765 | exon (NM_010095, exon 3 of 17) | exon (NM_010095, exon 3 of 17) | 4249 | NM_010095 | 13592 | Mm.319947 | NM_010095 | ENSMUSG00000022053 | Ebf2 | D14Ggc1e|Mmot1|O/E-3 | early B cell factor 2
chr9-162 | chr9 | 119977522 | 119977724 | + | 10.2 | 0.667 | promoter-TSS (NM_009987) | promoter-TSS (NM_009987) | -223 | NM_009987 | 13051 | Mm.44065 | NM_009987 | ENSMUSG00000052336 | Cx3cr1 | - | chemokine (C-X3-C) receptor 1
chr5-172 | chr5 | 142678207 | 142678409 | + | 10.2 | 0.619 | [NAME] (NM_177879, intron 44 of 44) | [NAME] (NM_177879, intron 44 of 44) | -199143 | NM_199068 | 17425 | Mm.24214 | NM_010812 | ENSMUSG00000056493 | Foxk1 | A630048H08Rik|AI463295|ENSMUSG00000075577|Gm10868|Mnf | forkhead box [NAME]
chr4-239 | chr4 | 62337803 | 62338005 | + | 10.2 | 0.632 | [NAME] (NM_134257, intron 10 of 15) | [NAME] (NM_134257, intron 10 of 15) | 57198 | NM_134257 | 50780 | Mm.286753 | NM_001081650 | ENSMUSG00000059810 | Rgs3 | 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S | regulator of G-protein signaling 3
chr10-113 | chr10 | 75785471 | 75785673 | + | 10.2 | 0.762 | [NAME] (NM_001081419, intron 2 of 37) | [NAME] (NM_001081419, intron 2 of 37) | 22464 | NM_001081419 | 64451 | Mm.33183 | NM_001081419 | ENSMUSG00000020231 | Dip2a | 4931420H10Rik|AI426328|Dip2|Kiaa0184-hp|mKIAA0184 | DIP2 disco-interacting protein 2 homolog A (Drosophila)
chr10-115 | chr10 | 77622754 | 77622956 | + | 10.2 | 0.75 | Intergenic | Intergenic | 9658 | NM_138601 | 28295 | Mm.268691 | NM_138601 | ENSMUSG00000053329 | D10Jhu81e | C21orf33|ES1 | DNA segment, Chr 10, Johns Hopkins University 81 expressed
chr9-156 | chr9 | 107533659 | 107533861 | + | 10.2 | 0.867 | [NAME], intron 1 of 8) | [NAME], intron 1 of 8) | 3913 | NM_008138 | 14678 | Mm.196464 | NM_008138 | ENSMUSG00000032562 | Gnai2 | C76432|Galphai2|Gia|Gnai-2 | guanine nucleotide binding protein (G protein), alpha inhibiting 2
chr15-100 | chr15 | 83423451 | 83423653 | + | 10.2 | 0.65 | intron (NM_183017, intron 1 of 13) | intron (NM_183017, intron 1 of 13) | 2035 | NM_183017 | 223723 | Mm.46778 | NM_183017 | ENSMUSG00000016757 | Ttll12 | BC055368|D430005B17 | tubulin tyrosine ligase-like family, member 12
chr6-269 | chr6 | 92734268 | 92734470 | + | 10.2 | 0.706 | intron (NM_175314, intron 28 of 29) | intron (NM_175314, intron 28 of 29) | -78191 | NM_001081146 | 243548 | Mm.248820 | NM_001081146 | ENSMUSG00000030020 | Prickle2 | 6230400G14Rik|6720451F06Rik|mpk2 | prickle homolog 2 (Drosophila)
chr6-445 | chr6 | 143918585 | 143918787 | + | 10.2 | 0.765 | intron (NM_001113559, intron 6 of 13) | intron (NM_001113559, intron 6 of 13) | 239402 | NM_001113559 | 20678 | [NAME] | NM_001113559 | ENSMUSG00000041540 | Sox5 | A730017D01Rik|AI528773|MGC124352 | SRY-box containing gene 5
chr10-133 | chr10 | 85172176 | 85172378 | + | 10.2 | 0.778 | Intergenic | Intergenic | 111121 | NM_001017525 | 74007 | Mm.36544 | NM_001017525 | ENSMUSG00000020042 | Btbd11 | 6330404E16Rik | BTB (POZ) domain containing 11
chr13-84 | chr13 | 24322638 | 24322840 | + | 10.2 | 0.8 | [NAME] (NM_026825, intron 2 of 37) | MTD|LTR|MaLR | 49920 | NM_026825 | 68732 | Mm.211047 | NM_177807 | ENSMUSG00000021338 | Lrrc16a | 1110037D04Rik|AI425970|CARMIL|D130057M20|Lrrc16 | leucine rich repeat containing 16A
chr1-191 | chr1 | 87745537 | 87745739 | + | 10.2 | 0.765 | exon (NM_133781, exon 9 of 9) | exon (NM_133781, exon 9 of 9) | -45447 | NM_022417 | 64294 | Mm.29870 | NM_022417 | ENSMUSG00000026223 | Itm2c | 3110038L02Rik|BRI3|E25|E25C|ITM3 | integral membrane protein 2C
chr5-147 | chr5 | 120840021 | 120840223 | + | 10.2 | 0.765 | Intergenic | Intergenic | -41773 | NM_008499 | 16873 | Mm.5151 | NM_008499 | ENSMUSG00000029595 | Lhx5 | Lim2 | LIM homeobox protein 5
chr14-135 | chr14 | 84059342 | 84059544 | + | 10.2 | 0.75 | Intergenic | L1Md_F2|LINE|L1 | -783927 | NM_001013753 | 219228 | Mm.153643 | NM_001013753 | ENSMUSG00000035566 | Pcdh17 | C030033F14Rik|Gm78 | protocadherin 17
chr2-158 | chr2 | 180207588 | 180207790 | + | 10.2 | 0.478 | [NAME] (NM_148933, intron 9 of 11) | [NAME] (NM_148933, intron 9 of 11) | 12006 | NM_148933 | 108115 | Mm.133687 | NM_148933 | ENSMUSG00000038963 | Slco4a1 | MGC28799|MGC28824|OATP-E|Slc21a12 | solute carrier organic anion transporter family, member 4a1
chr9-121 | chr9 | 43884475 | 43884677 | + | 10.2 | 0.737 | intron (NM_016808, intron 2 of 12) | intron (NM_016808, intron 2 of 12) | 7064 | NM_016808 | 53376 | Mm.272770 | NM_016808 | ENSMUSG00000032010 | Usp2 | B930035K21Rik|Ubp41 | ubiquitin specific peptidase 2
chr12-929 | chr12 | 111231792 | 111231994 | + | 10.2 | 0.875 | Intergenic | B3|SINE|B2 | 164390 | NR_045466 | 67280 | Mm.390495 | NR_045466 |  | 3110009F21Rik | - | RIKEN cDNA 3110009F21 gene
chr12-764 | chr12 | 103037532 | 103037734 | + | 10.2 | 0.778 | [NAME], intron 4 of 10) | [NAME], intron 4 of 10) | 19632 | NM_011812 | 23876 | Mm.465863 | NM_011812 | ENSMUSG00000021186 | Fbln5 | A55|DANCE|EVEC | fibulin 5
chr8-712 | chr8 | 34552941 | 34553143 | + | 10.2 | 0.833 | Intergenic | RMER1B|Other|Other | -41741 | NR_033589 | 628431 | [NAME] | NR_033589 |  | Hmgb1-rs17 | Hmg1-rs17 | high mobility group box 1, related sequence 17
chr3-132 | chr3 | 150415273 | 150415475 | + | 10.2 | 0.933 | Intergenic | Lx2|LINE|L1 | -685472 | NM_133222 | 170757 | Mm.317261 | NM_133222 | ENSMUSG00000039167 | Eltd1 | 1110033N21Rik|ETL1|Etl | EGF, latrophilin seven transmembrane domain containing 1
chr12-875 | chr12 | 108855693 | 108855895 | + | 10.2 | 0.56 | Intergenic | Intergenic | 117904 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr15-126 | chr15 | 102567170 | 102567372 | + | 10.2 | 0.684 | Intergenic | Intergenic | -14662 | NM_026192 | 67488 | Mm.71682 | NM_026192 | ENSMUSG00000023055 | Calcoco1 | 1810009B06Rik|Cocoa|Gcap11|KIAA1536|mKIAA1536 | calcium binding and coiled coil domain 1
chr5-124 | chr5 | 73745880 | 73746082 | + | 10.2 | 0.667 | Intergenic | Intergenic | -16103 | NM_026950 | 433904 | Mm.274892 | NM_026950 | ENSMUSG00000029153 | Ociad2 | 1810027I20Rik|MGC51598 | OCIA domain containing 2
chr17-195 | chr17 | 30904011 | 30904213 | + | 10.2 | 0.8 | [NAME] (NM_013811, intron 63 of 92) | MER68|LTR|ERVL | -134700 | NM_021332 | 14652 | Mm.390969 | NM_021332 | ENSMUSG00000024027 | Glp1r | GLP-1R|GLP1Rc | glucagon-like peptide 1 receptor
chr17-146 | chr17 | 23738854 | 23739056 | + | 10.2 | 0.824 | [NAME] (NM_001033425, intron 1 of 5) | B2_Mm2|SINE|B2 | 1132 | NM_001033425 | 332221 | Mm.270315 | NM_001033425 | ENSMUSG00000023902 | Zscan10 | BC068284|Zfp206|Zkscan10|Znf206 | zinc finger and SCAN domain containing 10
chr6-430 | chr6 | 140372102 | 140372304 | + | 10.2 | 0.933 | promoter-TSS (NM_144920) | promoter-TSS (NM_144920) | -417 | NM_144920 | 109135 | Mm.247670 | NM_144920 | ENSMUSG00000030231 | Plekha5 | 2810431N21Rik|AI428202|AK129423|Ayu21-9|Gt(pU21)9Imeg|MGC38455|Pepp2 | pleckstrin homology domain containing, family A member 5
chr8-861 | chr8 | 110096463 | 110096665 | + | 10.2 | 0.609 | Intergenic | B3|SINE|B2 | 15818 | NM_010817 | 17463 | Mm.18347 | NM_010817 | ENSMUSG00000039067 | Psmd7 | AW107203|Mov-34|Mov34 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
chr3-129 | chr3 | 138580140 | 138580342 | + | 10.2 | 0.722 | Intergenic | Intergenic | 157922 | NM_145544 | 229877 | Mm.28893 | NM_001040690 | ENSMUSG00000028149 | Rap1gds1 | BC011279|GDS1|MGC18981 | RAP1, GTP-GDP dissociation stimulator 1
chr10-102 | chr10 | 60542978 | 60543180 | + | 10.2 | 0.65 | Intergenic | Intergenic | -9012 | NM_025273 | 13180 | Mm.39473 | NM_025273 | ENSMUSG00000020098 | Pcbd1 | Dcoh|Pcbd | pterin 4 alpha carbinolamine dehydratase/dimerization cofactor of hepatocyte nuclear factor 1 alpha (TCF1) 1
chr5-121 | chr5 | 64198726 | 64198928 | + | 10.2 | 0.789 | exon (NM_177006, exon 7 of 7) | exon (NM_177006, exon 7 of 7) | -4907 | NM_029554 | 76261 | Mm.38143 | NM_029554 | ENSMUSG00000060512 | 0610040J01Rik | AI662686 | RIKEN cDNA 0610040J01 gene
chr1-225 | chr1 | 169674159 | 169674361 | + | 10.2 | 0.875 | [NAME] (NM_033652, intron 2 of 7) | [NAME] (NM_033652, intron 2 of 7) | 54571 | NM_033652 | 110648 | Mm.330081 | NM_033652 | ENSMUSG00000026686 | Lmx1a | Lmx1.1|MGC129356|MGC129357|dr|dreher|sst | LIM homeobox transcription factor 1 alpha
chr5-154 | chr5 | 123589267 | 123589469 | + | 10.2 | 0.875 | Intergenic | Intergenic | -6730 | NM_175092 | 23912 | Mm.253876 | NM_175092 | ENSMUSG00000029449 | Rhof | AI845056|AV026554|Arhf|Ifld1|Rif | ras homolog gene family, member f
chr14-158 | chr14 | 99848418 | 99848620 | + | 10.2 | 0.652 | Intergenic | Intergenic | 150609 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr6-379 | chr6 | 126799342 | 126799544 | + | 10.2 | 0.737 | promoter-TSS (NM_025358) | promoter-TSS (NM_025358) | -281 | NM_025358 | 66108 | Mm.29939 | NM_025358 | ENSMUSG00000000399 | Ndufa9 | 1010001N11Rik | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 9
chr14-125 | chr14 | 62981645 | 62981847 | + | 10.2 | 0.778 | [NAME] (NM_026001, intron 7 of 10) | ORR1E|LTR|MaLR | 30804 | NM_026001 | 67153 | Mm.26040 | NM_026001 | ENSMUSG00000021932 | [NAME] | 1110019N06Rik|2610207P08Rik|Dleu8 | ribonuclease H2, subunit B
[NAME] | chr11 | 120852858 | 120853060 | + | 10.2 | 0.812 | promoter-TSS (NM_139059) | promoter-TSS (NM_139059) | -312 | NM_027874 | 104318 | Mm.216227 | NM_027874 | ENSMUSG00000025162 | [NAME] | 1200006A05Rik|AA409348|D930010H05Rik | casein kinase 1, delta
chr10-145 | chr10 | 126474819 | 126475021 | + | 10.2 | 0.875 | [NAME] (NM_001205036, intron 2 of 2) | L2a|LINE|L2 | 3530 | NM_001205036 | 100504608 | Mm.486142 | NM_001205036 | ENSMUSG00000080115 | LOC100504608 | - | protein FAM119B-like
chr2-146 | chr2 | 164624975 | 164625177 | + | 10.2 | 0.765 | intron (NM_133240, intron 3 of 5) | intron (NM_133240, intron 3 of 5) | 5305 | NM_133240 | 170789 | Mm.277878 | NM_133240 | ENSMUSG00000017307 | [NAME] | PTE-2|Pte1 | acyl-CoA thioesterase 8
chr8-677 | chr8 | 16029876 | 16030078 | + | 10.2 | 0.875 | [NAME] intron 39 of 69) | [NAME] intron 39 of 69) | 138861 | NR_037214 | 100526464 |  | NR_037214 |  | Mir3106 | mmu-mir-3106 | microRNA 3106
chr12-709 | chr12 | 92341664 | 92341866 | + | 10.2 | 0.833 | [NAME] (NM_181815, intron 20 of 25) | RMER1B|Other|Other | 57477 | NR_045858 | 71349 | Mm.442093 | NR_045858 |  | 5430427M07Rik | - | RIKEN cDNA 5430427M07 gene
chr10-153 | chr10 | 129717169 | 129717371 | + | 10.2 | 0.824 | promoter-TSS (NM_007501) | promoter-TSS (NM_007501) | 26 | NM_007501 | 11923 | Mm.10695 | NM_007501 | ENSMUSG00000048015 | Neurod4 | AI846749|ATH-3|Atoh3|MATH-3|Math3|bHLHa4 | neurogenic differentiation 4
chr10-122 | chr10 | 80032123 | 80032325 | + | 10.2 | 0.667 | [NAME] (NM_078477, intron 1 of 1) | [NAME] (NM_078477, intron 1 of 1) | 7817 | NM_078477 | 118445 | Mm.41513 | NM_078477 | ENSMUSG00000035397 | Klf16 | AI843742|BTEB4|DRRF | Kruppel-like factor 16
chr5-165 | chr5 | 137946078 | 137946280 | + | 10.2 | 0.647 | Intergenic | ID_B1|SINE|B4 | -2522 | NM_028753 | 74097 | Mm.290242 | NM_028753 | ENSMUSG00000029715 | Pop7 | 0610037N12Rik|AI852017|Rpp20 | processing of precursor 7, ribonuclease P family, (S. cerevisiae)
chr8-803 | chr8 | 92673928 | 92674130 | + | 10.2 | 0.778 | Intergenic | Intergenic | 198122 | NM_172913 | 244579 | Mm.302755 | NM_172913 | ENSMUSG00000043668 | Tox3 | 500-9|BC052044|C230068E13|CAGF9|Tnrc9 | TOX high mobility group box family member 3
chr4-285 | chr4 | 108726734 | 108726936 | + | 10.2 | 0.706 | [NAME] (NM_146150, intron 21 of 30) | [NAME] (NM_146150, intron 21 of 30) | 36575 | NR_030432 | 791075 |  | NR_030432 |  | [NAME] | Mirn761|mir-761|mmu-mir-761 | microRNA 761
chr15-87 | chr15 | 78746349 | 78746551 | + | 10.2 | 0.684 | [NAME] (NM_020271, intron 1 of 1) | [NAME] (NM_020271, intron 1 of 1) | 2101 | NM_020271 | 57028 | Mm.263169 | NM_020271 | ENSMUSG00000068221 | Pdxp | 1600027H05Rik|AB041662|PLPP | pyridoxal (pyridoxine, vitamin [NAME]) phosphatase
chr6-451 | chr6 | 144871364 | 144871566 | + | 10.2 | 0.789 | Intergenic | Intergenic | 125867 | NM_001024468 | 12035 | Mm.4606 | NM_001024468 | ENSMUSG00000030268 | [NAME] | BCATc|Eca39 | branched chain aminotransferase 1, cytosolic
chr2-152 | chr2 | 168441421 | 168441623 | + | 10.2 | 0.75 | Intergenic | Intergenic | -14367 | NM_001037178 | 18019 | Mm.116802 | NM_001136073 | ENSMUSG00000027544 | Nfatc2 | AI607462|NF-ATc2|NFAT1|NFAT1-D|Nfatp | nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 2
chr12-978 | chr12 | 112884827 | 112885029 | + | 10.2 | 0.737 | [NAME] (NM_021516, intron 14 of 16) | [NAME] (NM_021516, intron 14 of 16) | 25621 | NM_021273 | 12709 | Mm.16831 | NM_021273 | ENSMUSG00000001270 | Ckb | B-CK|Bck|Ck-3|Ck3|Ckbb | [NAME], brain
chr1-173 | chr1 | 36364078 | 36364280 | + | 10.2 | 0.722 | promoter-TSS (NR_033310) | promoter-TSS (NR_033310) | -399 | NM_145996 | 214855 | Mm.34316 | NM_001172205 | ENSMUSG00000037447 | Arid5a | D430024K22Rik|MGC36895|Mrf1 | AT rich interactive domain 5A (MRF1-like)
chr4-316 | chr4 | 117105590 | 117105792 | + | 10.2 | 0.867 | intron (NM_025739, intron 2 of 14) | B1_Mur2|SINE|Alu | 63829 | NM_025739 | 66743 | Mm.318331 | NM_025739 | ENSMUSG00000028677 | Rnf220 | 4732477A13|4931406I20Rik|5730503K05Rik|AV302541 | ring finger protein 220
chr19-100 | chr19 | 24945779 | 24945981 | + | 10.2 | 0.762 | Intergenic | Intergenic | -9548 | NM_175013 | 226041 | Mm.105222 | NM_175013 | ENSMUSG00000041731 | Pgm5 | 4833423B07|9530034F03Rik|D830025G17|aciculin | phosphoglucomutase 5
chr7-130 | chr7 | 4817073 | 4817275 | + | 10.2 | 0.591 | intron (NM_026158, intron 1 of 5) | intron (NM_026158, intron 1 of 5) | 607 | NM_026158 | 67441 | Mm.41385 | NM_026158 | ENSMUSG00000052605 | Isoc2b | 0610042E07Rik|AI553388|Isoc2 | isochorismatase domain containing 2b
chr16-104 | chr16 | 94460498 | 94460700 | + | 10.2 | 0.75 | [NAME] (NM_139145, intron 4 of 9) | [NAME] (NM_139145, intron 4 of 9) | 48864 | NM_139145 | 110948 | Mm.30921 | NM_139145 | ENSMUSG00000040820 | Hlcs | 410I21.SP6|D16Jhu34 | holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)
chr11-257 | chr11 | 4965619 | 4965821 | + | 10.2 | 0.833 | promoter-TSS (NM_030228) | promoter-TSS (NM_030228) | -390 | NM_001190406 | 78926 | Mm.374836 | NM_001190406 | ENSMUSG00000034201 | Gas2l1 | 4930500E24Rik|D0Jmb1|Gar22|TU-71.1 | growth arrest-specific 2 like 1
chr6-439 | chr6 | 143067950 | 143068152 | + | 10.2 | 0.833 | Intergenic | Intergenic | -19424 | NM_001109688 | 74741 | Mm.130260 | NM_001109688 | ENSMUSG00000030279 | 5730419I09Rik | C030008B15Rik|CDP138|Kiaa0528 | RIKEN cDNA 5730419I09 gene
chr15-67 | chr15 | 53177304 | 53177506 | + | 10.2 | 0.611 | 5' UTR (NM_010162, exon 1 of 11) | 5' UTR (NM_010162, exon 1 of 11) | 333 | NM_010162 | 14042 | Mm.309395 | NM_010162 | ENSMUSG00000061731 | Ext1 | AA409028 | exostoses (multiple) 1
chr17-157 | chr17 | 26646238 | 26646440 | + | 10.2 | 0.737 | promoter-TSS (NM_013642) | promoter-TSS (NM_013642) | -922 | NM_013642 | 19252 | Mm.239041 | NM_013642 | ENSMUSG00000024190 | Dusp1 | 3CH134|MKP1|Ptpn16|U19515|erp|mkp-1 | dual specificity phosphatase 1
chr15-104 | chr15 | 85884503 | 85884705 | + | 10.2 | 0.722 | Intergenic | Intergenic | -3521 | NM_172611 | 223752 | Mm.24442 | NM_001205353 | ENSMUSG00000035900 | Gramd4 | 9930016O13 | GRAM domain containing 4
chr15-80 | chr15 | 76364909 | 76365111 | + | 10.2 | 0.667 | Intergenic | Intergenic | 4166 | NM_013909 | 30840 | Mm.275279 | NM_013909 | ENSMUSG00000022559 | Fbxl6 | AU021795|Fbl6 | F-box and leucine-rich repeat protein 6
chr19-97 | chr19 | 23226238 | 23226440 | + | 10.2 | 0.619 | [NAME] 1) | [NAME] 1) | 2418 | NR_035423 | 100316672 |  | NR_035423 |  | Mir1192 | Mirn1192|mmu-mir-1192 | microRNA 1192
chr5-128 | chr5 | 86836284 | 86836486 | + | 10.2 | 0.765 | Intergenic | RLTR9D|LTR|ERVK | -33973 | NM_145561 | 231382 | Mm.240139 | NM_145561 | ENSMUSG00000061259 | Tmprss11d | AST|AsP|BC020151|MGC28382 | [NAME], serine 11d
chr17-238 | chr17 | 74384246 | 74384448 | + | 10.2 | 0.824 | [NAME] (NM_053188, intron 1 of 4) | L1MDa|LINE|L1 | 12909 | [NAME] | 94224 | Mm.38933 | [NAME] | ENSMUSG00000038541 | Srd5a2 | 5ART2|S5AR 2 | steroid 5 alpha-reductase 2
chr12-717 | chr12 | 93451614 | 93451816 | + | 10.2 | 0.812 | Intergenic | Intergenic | -364118 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr7-186 | chr7 | 133726766 | 133726968 | + | 10.2 | 0.579 | promoter-TSS (NM_009907) | promoter-TSS (NM_009907) | -117 | NM_009907 | 12752 | Mm.268930 | NM_001146311 | ENSMUSG00000030720 | Cln3 | AI323623 | ceroid lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease)
chr6-466 | chr6 | 146359120 | 146359322 | + | 10.2 | 0.636 | [NAME] (NM_010586, intron 8 of 55) | B4|SINE|B4 | 91213 | NM_010586 | 16439 | Mm.393003 | NM_010586 | ENSMUSG00000030287 | Itpr2 | AI649341|InsP3R-2|InsP3R-5|Ip3r2|Itpr5 | inositol 1,4,5-triphosphate receptor 2
[NAME] | chr14 | 22665592 | 22665794 | + | 10.2 | 0.733 | TTS (NM_011695) | TTS (NM_011695) | 2439 | NM_026965 | 69156 | Mm.11827 | NM_026965 | ENSMUSG00000021773 | Comtd1 | 1810030M08Rik|MT773 | catechol-O-methyltransferase domain containing 1
chr11-269 | chr11 | 50073676 | 50073878 | + | 10.2 | 0.684 | [NAME] (NM_175334, intron 4 of 4) | [NAME] (NM_175334, intron 4 of 4) | -21804 | NM_008521 | 17001 | Mm.245151 | NM_008521 | ENSMUSG00000020377 | Ltc4s | - | leukotriene C4 synthase
chr5-158 | chr5 | 125641007 | 125641209 | + | 10.2 | 0.765 | [NAME] (NM_001253904, intron 1 of 47) | [NAME] (NM_001253904, intron 1 of 47) | 18476 | NM_001253904 | 20602 | Mm.472258 | NM_001253904 | ENSMUSG00000029478 | Ncor2 | N-CoR|SMRT|SMRTe | nuclear receptor co-repressor 2
chr8-666 | chr8 | 13741037 | 13741239 | + | 10.2 | 0.938 | [NAME] (NM_001101519, intron 3 of 3) | [NAME] (NM_001101519, intron 3 of 3) | -16552 | NM_027276 | 69957 | Mm.182412 | NM_027276 | ENSMUSG00000038416 | Cdc16 | 2700071J12Rik|2810431D22Rik|APC6 | CDC16 cell division cycle 16 homolog (S. cerevisiae)
chr3-104 | chr3 | 127495455 | 127495657 | + | 10.2 | 0.65 | intron (NM_145133, intron 2 of 2) | intron (NM_145133, intron 2 of 2) | 2725 | NM_145133 | 211550 | Mm.31852 | NM_145133 | ENSMUSG00000046688 | [NAME] | T2bp | TRAF-interacting protein with forkhead-associated domain
chr9-144 | chr9 | 70099495 | 70099697 | + | 10.2 | 0.7 | [NAME] (NM_181072, intron 1 of 27) | [NAME] (NM_181072, intron 1 of 27) | 44439 | NM_181072 | 71602 | Mm.249311 | XM_003689436 | ENSMUSG00000032220 | Myo1e | 2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3 | myosin IE
chr8-701 | chr8 | 26089978 | 26090180 | + | 10.2 | 0.8 | intron (NM_007404, intron 12 of 22) | intron (NM_007404, intron 12 of 22) | -30803 | NM_153397 | 353188 | Mm.269223 | NM_153397 | ENSMUSG00000037437 | Adam32 | - | a disintegrin and metallopeptidase domain 32
chr6-292 | chr6 | 115734234 | 115734436 | + | 10.2 | 0.7 | [NAME] (NM_025958, intron 4 of 14) | [NAME] (NM_025958, intron 4 of 14) | 9760 | NM_025958 | 67088 | Mm.277683 | NM_025958 | ENSMUSG00000030319 | Cand2 | 2210404G23Rik|Tp120b|mKIAA0667 | cullin-associated and neddylation-dissociated 2 (putative)
chr5-104 | chr5 | 17588105 | 17588307 | + | 10.2 | 0.667 | Intergenic | RLTR41|LTR|ERV1 | 119818 | NM_001081143 | 242851 | Mm.332230 | NM_001081143 | ENSMUSG00000028777 | Gnat3 | Ggust|Gtn | guanine nucleotide binding protein, alpha transducing 3
chr12-726 | chr12 | 99602184 | 99602386 | + | 10.2 | 0.7 | Intergenic | Intergenic | 95418 | NM_008152 | 14744 | Mm.378924 | NM_008152 | ENSMUSG00000021886 | Gpr65 | [NAME] | G-protein coupled receptor 65
chr8-724 | chr8 | 73321067 | 73321269 | + | 10.2 | 0.867 | Intergenic | CpG | -4836 | NM_199308 | 546071 | Mm.250731 | NM_199308 | ENSMUSG00000031833 | Mast3 | BC024265|mKIAA0561 | microtubule associated serine/threonine kinase 3
chr8-774 | chr8 | 88768047 | 88768249 | + | 10.2 | 0.75 | Intergenic | RLTR23|LTR|ERV1 | 322341 | NM_172912 | 244562 | Mm.67485 | NM_172912 | ENSMUSG00000036872 | Abcc12 | 4930467B22Rik|MRP9 | ATP-binding cassette, sub-family C (CFTR/MRP), member 12
chr9-127 | chr9 | 46406558 | 46406760 | + | 10.2 | 0.765 | Intergenic | Intergenic | -278590 | NM_183104 | 74361 | Mm.159169 | NM_183104 | ENSMUSG00000056617 | 4931429L15Rik | - | RIKEN cDNA 4931429L15 gene
chr17-233 | chr17 | 57150845 | 57151047 | + | 10.2 | 0.64 | promoter-TSS (NM_133801) | promoter-TSS (NM_133801) | -235 | NM_133801 | 98053 | Mm.24632 | NM_133801 | ENSMUSG00000002658 | Gtf2f1 | 2810405L04Rik|C76800|RAP74 | general transcription factor IIF, polypeptide 1
chr1-205 | chr1 | 95931555 | 95931757 | + | 10.2 | 0.706 | Intergenic | Intergenic | 14586 | NM_173772 | 241159 | Mm.214565 | NM_173772 | ENSMUSG00000034000 | Neu4 | 9330166I04 | sialidase 4
chr8-988 | chr8 | 126493703 | 126493905 | + | 10.2 | 0.7 | exon (NM_019552, exon 3 of 13) | exon (NM_019552, exon 3 of 13) | 13218 | NM_019552 | 56199 | Mm.274243 | NM_019552 | ENSMUSG00000031974 | Abcb10 | AU016331|Abc-me|Abcb12|C76534 | ATP-binding cassette, sub-family B (MDR/TAP), member 10
chr9-105 | chr9 | 20783713 | 20783915 | + | 10.2 | 0.842 | Intergenic | RSINE1|SINE|B4 | -2577 | NM_010333 | 14739 | Mm.46493 | NM_010333 | ENSMUSG00000043895 | S1pr2 | 1100001A16Rik|Edg5|Gpcr13|H218|LPb2|S1P2 | sphingosine-1-phosphate receptor 2
chr12-661 | chr12 | 74942003 | 74942205 | + | 10.2 | 0.647 | Intergenic | RMER19C|LTR|ERVK | -66750 | NM_010431 | 15251 | Mm.446610 | NM_010431 | ENSMUSG00000021109 | Hif1a | AA959795|HIF1alpha|MOP1|bHLHe78 | hypoxia inducible factor 1, alpha subunit
chr18-77 | chr18 | 69753048 | 69753250 | + | 10.2 | 0.842 | [NAME] (NM_001083967, intron 8 of 19) | [NAME] (NM_001083967, intron 8 of 19) | 247774 | NM_001083967 | 21413 | Mm.4269 | NM_001083967 | ENSMUSG00000053477 | Tcf4 | 5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19 | transcription factor 4
chr4-366 | chr4 | 135051747 | 135051949 | + | 10.2 | 0.667 | promoter-TSS (NM_030189) | promoter-TSS (NM_030189) | -54 | NM_030189 | 78806 | Mm.374844 | NM_030189 | ENSMUSG00000028801 | 4930555I21Rik | 4930403G18Rik | RIKEN cDNA 4930555I21 gene
chr11-361 | chr11 | 114479747 | 114479949 | + | 10.2 | 0.824 | Intergenic | Intergenic | -50009 | NM_023372 | 67671 | Mm.371629 | NM_001048057 | ENSMUSG00000057322 | Rpl38 | 0610025G13Rik|Rbt|Ts|Tss | ribosomal protein L38
chr2-105 | chr2 | 35372857 | 35373059 | + | 10.2 | 0.737 | Intergenic | B3A|SINE|B2 | -41020 | NM_001114125 | 69601 | Mm.29629 | NM_001001602 | ENSMUSG00000026883 | Dab2ip | 2310011D08Rik|AI480459|Aip1|KIAA1743|MGC144147|mKIAA1743 | disabled homolog 2 (Drosophila) interacting protein
chr1-231 | chr1 | 181889162 | 181889364 | + | 10.2 | 0.571 | Intergenic | Intergenic | -1957 | NM_001033285 | 226751 | Mm.259655 | NM_001033285 | ENSMUSG00000026490 | Cdc42bpa | [NAME] | CDC42 binding protein kinase alpha
chr8-835 | chr8 | 106507903 | 106508105 | + | 10.2 | 0.875 | Intergenic | Intergenic | -117521 | NM_009868 | 12562 | Mm.21767 | NM_009868 | ENSMUSG00000031871 | Cdh5 | 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec | cadherin 5
chr4-351 | chr4 | 128489034 | 128489236 | + | 10.2 | 0.636 | Intergenic | Intergenic | -5779 | NM_001081098 | 230761 | Mm.22616 | NM_001081098 | ENSMUSG00000028799 | Zfp362 | - | zinc finger protein 362
chr8-748 | chr8 | 85802090 | 85802292 | + | 10.2 | 0.8 | Intergenic | Intergenic | -12056 | NM_009463 | 22227 | Mm.4177 | NM_009463 | ENSMUSG00000031710 | Ucp1 | AI385626|Slc25a7|Ucp | uncoupling protein 1 (mitochondrial, proton carrier)
chr8-688 | chr8 | 23328727 | 23328929 | + | 10.2 | 0.933 | [NAME], intron 13 of 13) | [NAME], intron 13 of 13) | -8947 | NM_001205253 | 56229 | Mm.32067 | NM_001205253 | ENSMUSG00000031480 | Thsd1 | 4833423O18Rik|Tmtsp | thrombospondin, type I, domain 1
chr18-78 | chr18 | 74085503 | 74085705 | + | 10.2 | 0.667 | Intergenic | RMER20A|LTR|ERVK | 66563 | NM_027741 | 71263 | Mm.126220 | NM_027741 | ENSMUSG00000064036 | Mro | 4930507C04Rik|4933435E20Rik | maestro
chr8-732 | chr8 | 79784343 | 79784545 | + | 10.2 | 0.938 | [NAME] (NM_030113, intron 20 of 22) | B3|SINE|B2 | -256511 | NR_028125 | 70345 | Mm.411813 | NR_028125 |  | 0610038B21Rik | - | RIKEN cDNA 0610038B21 gene
chr1-203 | chr1 | 94810482 | 94810684 | + | 10.2 | 0.867 | [NAME] (NM_181405, intron 1 of 10) | [NAME] (NM_181405, intron 1 of 10) | 3181 | NM_181405 | 108657 | Mm.200971 | NM_181405 | ENSMUSG00000026269 | Rnpepl1 | 1110014H17Rik|AI894167 | arginyl aminopeptidase (aminopeptidase B)-like 1
chr17-220 | chr17 | 36245700 | 36245902 | + | 10.2 | 0.824 | Intergenic | RLTR9F|LTR|ERVK | 12579 | NM_010395 | 15024 | Mm.426031 | NM_010395 | ENSMUSG00000079491 | H2-T10 | H-2T10 | histocompatibility 2, T region locus 10
chr17-215 | chr17 | 34815129 | 34815331 | + | 10.2 | 0.632 | [NAME], intron 3 of 32) | B3A|SINE|B2 | 7750 | NM_031176 | 81877 | Mm.290527 | NM_031176 | ENSMUSG00000033327 | Tnxb | Tn-mhc|Tnx | tenascin XB
chr8-987 | chr8 | 126449098 | 126449300 | + | 10.2 | 0.722 | [NAME], intron 12 of 25) | [NAME], intron 12 of 25) | 23966 | NM_172288 | 234865 | Mm.267812 | NM_172288 | ENSMUSG00000039509 | Nup133 | mermaid | nucleoporin 133
chr5-145 | chr5 | 120046904 | 120047106 | + | 10.2 | 0.611 | Intergenic | Intergenic | -16638 | NR_045702 | 100993 | Mm.381453 | NR_045702 |  | AW549542 | - | expressed sequence AW549542
chr17-169 | chr17 | 27702207 | 27702409 | + | 10.2 | 0.765 | [NAME] (NM_001002895, intron 1 of 4) | [NAME] (NM_001002895, intron 1 of 4) | 364 | NM_001002895 | 106672 | Mm.61488 | NM_001002895 | ENSMUSG00000062753 | AI413582 | AI854251|MGC41609 | expressed sequence AI413582
chr3-120 | chr3 | 134705167 | 134705369 | + | 10.2 | 0.778 | Intergenic | Intergenic | -170259 | NM_173762 | 229841 | Mm.161470 | NM_173762 | [NAME] | Cenpe | 312kDa|AU019344|BC049989|C530022J18|CENP-E|Kif10 | centromere protein E
chr4-252 | chr4 | 101319472 | 101319674 | + | 10.2 | 0.682 | promoter-TSS (NM_175036) | promoter-TSS (NM_175036) | -815 | NM_175036 | 230514 | Mm.4756 | NM_175036 | ENSMUSG00000035212 | Leprot | LEPR|MGC6694|OB-RGRP|Obrgrp|VPS55 | [NAME] receptor overlapping transcript
chr18-55 | chr18 | 24463874 | 24464076 | + | 10.2 | 0.722 | Intergenic | Intergenic | 99480 | NM_001160404 | 14423 | Mm.30249 | NM_001160404 | ENSMUSG00000000420 | Galnt1 | - | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 1
chr12-664 | chr12 | 80398564 | 80398766 | + | 10.2 | 0.684 | [NAME] (NM_001252562, intron 1 of 7) | [NAME] (NM_001252562, intron 1 of 7) | 327 | NM_001252562 | 19363 | Mm.341756 | NM_009014 | ENSMUSG00000059060 | Rad51l1 | AI553500|R51H2|Rad51b|mREC2 | RAD51-like 1 (S. cerevisiae)
chr1-217 | chr1 | 153527354 | 153527556 | + | 10.2 | 0.75 | [NAME] (NM_022018, intron 5 of 13) | RMER1B|Other|Other | -75049 | NM_001039644 | 66967 | Mm.337691 | NM_001039644 | ENSMUSG00000043019 | Edem3 | 2310050N11Rik | ER degradation enhancer, mannosidase alpha-like 3
chr4-302 | chr4 | 115823291 | 115823493 | + | 10.2 | 0.8 | [NAME] 1 of 21) | [NAME] 1 of 21) | 269 | NM_026651 | 68273 | Mm.474251 | NM_026651 | ENSMUSG00000028700 | Pomgnt1 | 0610016I07Rik|4930467B06Rik | protein O-linked mannose beta1,2-N-acetylglucosaminyltransferase
chr11-383 | chr11 | 119401827 | 119402029 | + | 10.2 | 0.875 | 3' UTR (NM_008730, exon 5 of 5) | 3' UTR (NM_008730, exon 5 of 5) | 7206 | NM_008730 | 18164 | Mm.5142 | NM_008730 | ENSMUSG00000025582 | Nptx1 | D11Bwg1004e|Np1 | neuronal pentraxin 1
chr15-75 | chr15 | 75447454 | 75447656 | + | 10.2 | 0.789 | [NAME] (NM_011759, intron 1 of 2) | [NAME] (NM_011759, intron 1 of 2) | 440 | NM_011759 | 22701 | Mm.87210 | NM_001044718 | ENSMUSG00000047003 | Zfp41 | CTfin92|Zfp-41 | zinc finger protein 41
chr6-443 | chr6 | 143664270 | 143664472 | + | 10.2 | 0.706 | Intergenic | Lx3B|LINE|L1 | -64563 | NR_045732 | 73425 | Mm.417844 | NR_045732 |  | 1700060C16Rik | - | RIKEN cDNA 1700060C16 gene
chr13-83 | chr13 | 24083323 | 24083525 | + | 10.2 | 0.737 | promoter-TSS (NM_145399) | promoter-TSS (NM_145399) | -341 | NM_145399 | 214189 | Mm.255667 | NM_145399 | ENSMUSG00000021337 | Scgn | MGC27615 | secretagogin, EF-hand calcium binding protein
chr4-387 | chr4 | 151921370 | 151921572 | + | 10.2 | 0.765 | [NAME] (NM_153424, intron 18 of 29) | [NAME] (NM_153424, intron 18 of 29) | 69220 | NM_153424 | 260305 | Mm.302496 | NM_153424 | ENSMUSG00000039577 | Nphp4 | 4930564O18Rik|nmf192 | nephronophthisis 4 (juvenile) homolog (human)
chr5-142 | chr5 | 114070363 | 114070565 | + | 10.2 | 0.737 | intron (NM_008153, intron 1 of 2) | intron (NM_008153, intron 1 of 2) | 29935 | NM_008153 | 14747 | Mm.5196 | NM_008153 | ENSMUSG00000042190 | Cmklr1 | ChemR23|DEZ|Gpcr27|mcmklr1 | chemokine-like receptor 1
chr8-1020 | chr8 | 130882041 | 130882243 | + | 10.2 | 0.684 | promoter-TSS (NM_008737) | promoter-TSS (NM_008737) | -831 | NM_008737 | 18186 | Mm.271745 | NM_008737 | ENSMUSG00000025810 | Nrp1 | C530029I03|NP-1|NPN-1|Npn1|Nrp | [NAME] 1
chr7-166 | chr7 | 74057735 | 74057937 | + | 10.2 | 0.765 | [NAME] (NM_001033877, intron 6 of 22) | [NAME] (NM_001033877, intron 6 of 22) | 73215 | NM_001033877 | 233332 | Mm.445763 | NM_001033877 | ENSMUSG00000058145 | Adamts17 | AU023434 | a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17
chr4-330 | chr4 | 118846492 | 118846694 | + | 10.2 | 0.6 | promoter-TSS (NM_001145935) | promoter-TSS (NM_001145935) | -132 | NM_001145935 | 195522 | Mm.169620 | NM_001145935 | ENSMUSG00000045268 | Zfp691 | 6430544H17Rik|MGC118413|Znf691 | zinc finger protein 691
chr7-152 | chr7 | 51480807 | 51481009 | + | 10.2 | 0.889 | intron (NM_010639, intron 1 of 4) | intron (NM_010639, intron 1 of 4) | 101 | NM_010639 | 16612 | Mm.142722 | NM_010639 | ENSMUSG00000063903 | Klk1 | 0610007D04Rik|Kal|Klk1b6|Klk6|mGk-6 | kallikrein 1
chr2-93 | chr2 | 31071014 | 31071216 | + | 10.2 | 0.778 | 3' UTR (NM_178760, exon 18 of 18) | 3' UTR (NM_178760, exon 18 of 18) | -30328 | NM_019681 | 14299 | Mm.249318 | NM_019681 | ENSMUSG00000062661 | Ncs1 | 9430075O15Rik|A730032G13Rik|AI836659|Freq|Mfreq|NCS-1 | neuronal calcium sensor 1
chr12-848 | chr12 | 107274691 | 107274893 | + | 10.2 | 0.933 | exon (NM_011705, exon 2 of 15) | exon (NM_011705, exon 2 of 15) | 26319 | NM_001029843 | 22367 | Mm.2981 | NM_001029843 | ENSMUSG00000021115 | Vrk1 | 51PK | vaccinia related kinase 1
chr14-121 | chr14 | 51549795 | 51549997 | + | 10.2 | 0.867 | exon (NM_001033271, exon 2 of 7) | exon (NM_001033271, exon 2 of 7) | 628 | NM_001033271 | 219024 | Mm.239117 | NM_001033271 | ENSMUSG00000035953 | Tmem55b | BC039161|MGC118137 | [NAME] 55b
chr15-99 | chr15 | 82101746 | 82101948 | + | 10.2 | 0.684 | Intergenic | Intergenic | -3518 | NM_011889 | 24050 | Mm.309707 | NM_011889 | ENSMUSG00000022456 | 2013-09-03 00:00:00 | 3110018K01Rik|AV154067|B530002E20Rik|Sep3 | septin 3
chr6-403 | chr6 | 134106179 | 134106381 | + | 10.2 | 0.65 | intron (NM_007961, intron 2 of 7) | intron (NM_007961, intron 2 of 7) | 120555 | NM_007961 | 14011 | Mm.269995 | NM_007961 | ENSMUSG00000030199 | Etv6 | AW123102|AW557856|Tel | ets variant gene 6 (TEL oncogene)
chr4-358 | chr4 | 132502248 | 132502450 | + | 10.2 | 0.632 | Intergenic | Intergenic | -23883 | NM_145553 | 230789 | Mm.11473 | NM_001163792 | ENSMUSG00000028878 | Fam76a | MGC11672 | family with sequence similarity 76, member A
chr8-912 | chr8 | 122386662 | 122386864 | + | 10.2 | 0.619 | intron (NM_146219, intron 1 of 4) | intron (NM_146219, intron 1 of 4) | 558 | NM_146219 | 234796 | Mm.86446 | NM_146219 | ENSMUSG00000031828 | Klhl36 | MGC37805 | kelch-like 36 (Drosophila)
chr4-333 | chr4 | 119164257 | 119164459 | + | 10.2 | 0.842 | intron (NM_177572, intron 1 of 4) | intron (NM_177572, intron 1 of 4) | 845 | NM_177572 | 194237 | Mm.206201 | NM_177572 | ENSMUSG00000048899 | Rimkla | B930030J24|NAAGS|NAAGS-II|Rimk | ribosomal modification protein rimK-like family member A
chr19-76 | chr19 | 5161730 | 5161932 | + | 10.2 | 0.875 | [NAME] (NM_153129, intron 2 of 23) | L2a|LINE|L2 | -43423 | NM_008451 | 16594 | Mm.271648 | NM_008451 | ENSMUSG00000024862 | Klc2 | 8030455F02Rik|AW212649|KLC 2|KLC-2 | [NAME] chain 2
chr12-652 | chr12 | 8783192 | 8783394 | + | 10.2 | 0.824 | intron (NM_011519, intron 1 of 4) | intron (NM_011519, intron 1 of 4) | 5091 | NM_011519 | 20969 | Mm.2580 | NM_011519 | ENSMUSG00000020592 | Sdc1 | AA408134|AA409076|CD138|Sstn|Synd|Synd1|syn-1 | syndecan 1
chr14-129 | chr14 | 64682962 | 64683164 | + | 10.2 | 0.688 | Intergenic | Intergenic | 21163 | NM_001081063 | 71037 | [NAME] | NM_001081063 | ENSMUSG00000034623 | Prss55 | 4933401F05Rik|MGC144424 | protease, serine, 55
chr2-124 | chr2 | 128959215 | 128959417 | + | 10.2 | 0.722 | 3' UTR (NM_025395, exon 4 of 4) | 3' UTR (NM_025395, exon 4 of 4) | 3880 | NM_025395 | 66170 | Mm.40621 | NM_025395 | ENSMUSG00000037938 | Chchd5 | 1110027L01Rik|AW045710 | coiled-coil-helix-coiled-coil-helix domain containing 5
chr8-729 | chr8 | 79639117 | 79639319 | + | 10.2 | 0.867 | [NAME] (NM_001083906, intron 3 of 8) | [NAME] (NM_001083906, intron 3 of 8) | 212811 | NM_001083906 | 110784 | Mm.324393 | NM_001083906 | ENSMUSG00000031618 | Nr3c2 | MR|Mlr | nuclear receptor subfamily 3, group C, member 2
chr1-210 | chr1 | 122264341 | 122264543 | + | 10.2 | 0.7 | Intergenic | Intergenic | 27283 | NM_207233 | 226359 | Mm.337409 | NM_207233 | ENSMUSG00000036907 | C1ql2 | BC040774|CTRP10|MGC49730 | complement component 1, q subcomponent-like 2
chr11-357 | chr11 | 112922268 | 112922470 | + | 10.2 | 0.647 | [NAME] (NR_015556, intron 2 of 2) | [NAME] (NR_015556, intron 2 of 2) | 140783 | NR_015556 | 72386 | Mm.266961 | NR_015556 |  | 2610035D17Rik | - | RIKEN cDNA 2610035D17 gene
chr3-117 | chr3 | 132464538 | 132464740 | + | 10.2 | 0.889 | exon (NM_001163455, exon 24 of 26) | exon (NM_001163455, exon 24 of 26) | 117531 | NM_173032 | 271981 | Mm.257864 | NM_001163455 | ENSMUSG00000028030 | Tbck | 1700120J03Rik|9430001M19|A630047E20Rik|Tbckl | TBC1 domain containing kinase
chr8-781 | chr8 | 90097974 | 90098176 | + | 10.2 | 0.938 | [NAME] (NM_177901, intron 3 of 5) | [NAME] (NM_177901, intron 3 of 5) | 10269 | NM_177901 | 330820 | Mm.212913 | NM_177901 | ENSMUSG00000069971 | 4933402J07Rik | - | RIKEN cDNA 4933402J07 gene
chr9-119 | chr9 | 43067666 | 43067868 | + | 10.2 | 0.636 | promoter-TSS (NM_001243261) | promoter-TSS (NM_001243261) | -195 | NM_001243261 | 235302 | Mm.135745 | NM_001243261 |  | D630033O11Rik | Gm588 | RIKEN cDNA D630033O11 gene
chr4-384 | chr4 | 148961759 | 148961961 | + | 10.2 | 0.667 | [NAME] (NM_023051, intron 1 of 18) | [NAME] (NM_023051, intron 1 of 18) | 1113 | NM_023051 | 65945 | Mm.38993 | NM_023051 | ENSMUSG00000039953 | Clstn1 | 1810034E21Rik|Cst-1|Cstn1 | calsyntenin 1
chr8-682 | chr8 | 18690423 | 18690625 | + | 10.2 | 0.833 | TTS (NM_007426) | TTS (NM_007426) | 51027 | NM_007426 | 11601 | Mm.439874 | NM_007426 | ENSMUSG00000031465 | Angpt2 | Agpt2|Ang-2|Ang2 | angiopoietin 2
chr8-744 | chr8 | 82395219 | 82395421 | + | 10.2 | 0.933 | Intergenic | Intergenic | 159601 | NM_026904 | 68999 | Mm.257445 | NM_026904 | ENSMUSG00000036977 | Anapc10 | 1500026N15Rik|A830003M23Rik|APC10 | anaphase promoting complex subunit 10
chr19-121 | chr19 | 46606742 | 46606944 | + | 10.2 | 0.778 | [NAME] (NM_019718, intron 5 of 5) | [NAME] (NM_019718, intron 5 of 5) | 30705 | NM_053100 | 93679 | Mm.489609 | NM_053100 | ENSMUSG00000025034 | Trim8 | AA408830|BB006755|GERP|Rnf27 | tripartite motif-containing 8
chr8-866 | chr8 | 111472858 | 111473060 | + | 10.2 | 0.591 | exon (NM_007496, exon 9 of 10) | exon (NM_007496, exon 9 of 10) | 12199 | NR_037295 | 100526511 |  | NR_037295 |  | Mir3108 | mmu-mir-3108 | microRNA 3108
chr2-112 | chr2 | 90357074 | 90357276 | + | 10.2 | 0.667 | [NAME], intron 1 of 23) | [NAME], intron 1 of 23) | -37844 | NM_001135657 | 19271 | Mm.330393 | NM_001135657 | ENSMUSG00000025314 | Ptprj | AI450271|BET|Byp|CD148|DEP-1|PTPbeta2|Ptpb2|RPTPJ|Scc-1|Scc1 | protein tyrosine phosphatase, receptor type, J
chr7-173 | chr7 | 104496060 | 104496262 | + | 10.2 | 0.591 | exon (NM_001039039, exon 2 of 2) | exon (NM_001039039, exon 2 of 2) | 15328 | NM_001039039 | 622320 | Mm.334029 | NM_001039039 | ENSMUSG00000044952 | Kctd21 | EG622320 | potassium channel tetramerisation domain containing 21
chr8-858 | chr8 | 109604583 | 109604785 | + | 10.2 | 0.824 | [NAME] (NM_001083118, intron 5 of 6) | [NAME] (NM_001083118, intron 5 of 6) | -15140 | NM_025458 | 66269 | Mm.23032 | NM_025458 | ENSMUSG00000031919 | Tmed6 | 1810015P03Rik|1810018I24Rik|MGC107643 | transmembrane emp24 protein transport domain containing 6
chr10-107 | chr10 | 63123060 | 63123262 | + | 10.2 | 0.722 | [NAME] (NM_001164376, intron 5 of 17) | [NAME] (NM_001164376, intron 5 of 17) | -160642 | NM_001164519 | 216033 | Mm.444692 | NM_001164376 | ENSMUSG00000060843 | Ctnna3 | 4930429L08Rik|4933408A16|Catna3|Vr22 | catenin (cadherin associated protein), alpha 3
chr6-266 | chr6 | 88824015 | 88824217 | + | 10.2 | 0.722 | promoter-TSS (NM_176973) | promoter-TSS (NM_176973) | -78 | NM_176973 | 319655 | Mm.483545 | NM_176973 | ENSMUSG00000033152 | Podxl2 | D130074J02Rik|PODLX2 | podocalyxin-like 2
chr9-117 | chr9 | 41910019 | 41910221 | + | 10.2 | 0.938 | [NAME] (NM_011436, intron 2 of 47) | [NAME] (NM_011436, intron 2 of 47) | 22252 | NM_011436 | 20660 | Mm.121920 | NM_011436 | ENSMUSG00000049313 | Sorl1 | 2900010L19Rik|AI596264|AW261561|LR11|SorLA|gp250|mSorLA | sortilin-related receptor, LDLR class A repeats-containing
chr8-670 | chr8 | 14216356 | 14216558 | + | 10.2 | 0.824 | intron (NM_172910, intron 2 of 15) | intron (NM_172910, intron 2 of 15) | 120582 | NM_172910 | 244310 | Mm.404697 | NM_001145965 | ENSMUSG00000047495 | Dlgap2 | 6430596N04Rik|DAP2|Sapap2 | discs, large (Drosophila) homolog-associated protein 2
chr4-278 | chr4 | 107921794 | 107921996 | + | 10.2 | 0.65 | [NAME] (NM_001033634, intron 8 of 13) | B3|SINE|B2 | -31368 | NM_001167936 | 230590 | Mm.301798 | NM_001167936 | ENSMUSG00000034645 | [NAME] | BC022150 | zyg-11 homolog A (C. elegans)
chr7-183 | chr7 | 132588034 | 132588236 | + | 10.2 | 0.8 | promoter-TSS (NM_029842) | promoter-TSS (NM_029842) | 1 | NM_029842 | 77035 | Mm.307239 | NM_029842 | ENSMUSG00000030752 | Jmjd5 | 3110005O21Rik | [NAME] 5
chr19-82 | chr19 | 6142218 | 6142420 | + | 10.2 | 0.778 | Intergenic | B2_Mm2|SINE|B2 | -1182 | NM_019722 | 56327 | Mm.21071 | NM_019722 | ENSMUSG00000024944 | Arl2 | 2610009M23Rik|AI115441|AW553335 | ADP-ribosylation factor-like 2
chr15-92 | chr15 | 79784439 | 79784641 | + | 10.2 | 0.875 | Intergenic | B3|SINE|B2 | -21464 | NM_144811 | 52609 | Mm.323442 | NM_144811 | ENSMUSG00000053411 | Cbx7 | 1600014J01Rik|AI851678|D15Ertd417e | chromobox homolog 7
chr11-334 | chr11 | 98601691 | 98601893 | + | 10.2 | 0.882 | Intergenic | Intergenic | -1395 | NM_178060 | 21833 | Mm.442648 | NM_178060 | ENSMUSG00000058756 | Thra | 6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2 | thyroid hormone receptor alpha
chr10-100 | chr10 | 59693637 | 59693839 | + | 10.2 | 0.542 | Intergenic | Intergenic | -11730 | NM_016803 | 53374 | Mm.12866 | NM_016803 | ENSMUSG00000057337 | Chst3 | C6ST|C6ST-1|GST-0 | carbohydrate (chondroitin 6/keratan) sulfotransferase 3
chr4-379 | chr4 | 147422067 | 147422269 | + | 10.2 | 0.7 | [NAME] (NM_001161798, intron 4 of 11) | [NAME] (NM_001161798, intron 4 of 11) | 6870 | NR_027809 | 17769 | Mm.89959 | NM_001161798 | ENSMUSG00000029009 | Mthfr | AI323986 | 5,10-methylenetetrahydrofolate reductase
chr9-148 | chr9 | 77598104 | 77598306 | + | 10.2 | 0.722 | Intergenic | Intergenic | -4137 | NM_010295 | 14629 | Mm.89888 | NM_010295 | ENSMUSG00000032350 | [NAME] | D9Wsu168e|GLCL-H|Ggcs-hs|Glclc | glutamate-cysteine ligase, catalytic subunit
chr11-317 | chr11 | 88029065 | 88029267 | + | 10.2 | 0.824 | Intergenic | Intergenic | 11246 | NM_024174 | 64656 | Mm.168680 | NM_024174 | ENSMUSG00000023723 | Mrps23 | 2310047I09Rik|D11Bwg1153e|Rpms23 | mitochondrial ribosomal protein S23
chr3-85 | chr3 | 96381221 | 96381423 | + | 10.2 | 0.824 | TTS (NM_027241) | TTS (NM_027241) | -10598 | NR_040409 | 100038464 | Mm.475126 | NR_040409 |  | Gm15441 | ENSMUSG00000074398|OTTMUSG00000021867 | predicted gene 15441
chr3-67 | chr3 | 61168059 | 61168261 | + | 10.2 | 0.765 | promoter-TSS (NM_028712) | promoter-TSS (NM_028712) | -269 | NM_028712 | 74012 | Mm.477648 | NM_028712 | ENSMUSG00000036894 | Rap2b | 4021402C18Rik|AA408554 | RAP2B, member of RAS oncogene family
chr17-244 | chr17 | 87361636 | 87361838 | + | 10.2 | 0.722 | promoter-TSS (NM_145491) | promoter-TSS (NM_145491) | -714 | NM_145491 | 104215 | Mm.826 | NM_145491 | ENSMUSG00000024143 | Rhoq | Arhq|TC10A|Tc10 | ras homolog gene family, member Q
chr5-139 | chr5 | 111269087 | 111269289 | + | 10.2 | 0.667 | promoter-TSS (NM_153571) | promoter-TSS (NM_153571) | 152 | NM_016681 | 50883 | Mm.279308 | NM_016681 | ENSMUSG00000029521 | Chek2 | CHK2|Cds1|HUCDS1|Rad53 | checkpoint kinase 2
chr6-257 | chr6 | 9759529 | 9759731 | + | 10.2 | 0.933 | Intergenic | Lx3A|LINE|L1 | 859611 | NM_008751 | 18231 | Mm.46954 | NM_008751 | ENSMUSG00000046178 | Nxph1 | C130005L03Rik | [NAME] 1
chr17-158 | chr17 | 27200434 | 27200636 | + | 10.2 | 0.765 | [NAME] (NM_080553, intron 1 of 57) | [NAME] (NM_080553, intron 1 of 57) | 6286 | NM_080553 | 16440 | Mm.458106 | NM_080553 | ENSMUSG00000042644 | Itpr3 | Ip3r3|Itpr-3 | inositol 1,4,5-triphosphate receptor 3
chr18-66 | chr18 | 38745719 | 38745921 | + | 10.2 | 0.867 | TTS (NM_011898) | TTS (NM_011898) | 15102 | NM_011898 | 24066 | Mm.42038 | NM_011898 | ENSMUSG00000024427 | Spry4 | A030006O18Rik|sprouty4 | sprouty homolog 4 (Drosophila)
chr4-236 | chr4 | 49533814 | 49534016 | + | 10.2 | 0.565 | promoter-TSS (NM_145547) | promoter-TSS (NM_145547) | 40 | NM_178603 | 28028 | Mm.30052 | NM_178603 | ENSMUSG00000044018 | [NAME] | AA408971|AI317351|D4Wsu125e | mitochondrial ribosomal protein L50
chr12-957 | chr12 | 112145009 | 112145211 | + | 10.2 | 0.667 | [NAME], intron 3 of 20) | [NAME], intron 3 of 20) | 17636 | NM_001081057 | 104859 | Mm.35583 | NM_175336 | ENSMUSG00000021275 | Tecpr2 | 4930573I19Rik|AI604920|mKIAA0297 | tectonin beta-propeller repeat containing 2
chr5-144 | chr5 | 117654110 | 117654312 | + | 10.2 | 0.875 | [NAME] 6 of 20) | [NAME] 6 of 20) | 70614 | NM_183306 | 330177 | Mm.487518 | NM_001081308 | ENSMUSG00000061288 | Taok3 | 2900006A08Rik|A130052D22|A430105I05Rik | [NAME] kinase 3
chr13-92 | chr13 | 49825668 | 49825870 | + | 10.2 | 0.706 | [NAME], intron 31 of 33) | [NAME], intron 31 of 33) | 48270 | NM_172015 | 105148 | Mm.21118 | NM_172015 | ENSMUSG00000037851 | Iars | 2510016L12Rik|AI327140|AU044614|E430001P04Rik|ILRS | isoleucine-tRNA synthetase
chr19-104 | chr19 | 37805949 | 37806151 | + | 10.2 | 0.591 | Intergenic | Intergenic | 33752 | NM_007811 | 13082 | Mm.42230 | NM_007811 | ENSMUSG00000024987 | Cyp26a1 | Cyp26|MGC13860|P450RA|P450RAI|RAH | cytochrome P450, family 26, subfamily a, polypeptide 1
chr15-113 | chr15 | 98554512 | 98554714 | + | 10.2 | 0.688 | TTS (NM_153518) | TTS (NM_153518) | 4016 | NM_024169 | 66120 | Mm.30729 | NM_024169 | ENSMUSG00000003355 | Fkbp11 | 1110002O23Rik|FKBP-11 | FK506 binding protein 11
chr5-161 | chr5 | 135043188 | 135043390 | + | 10.2 | 0.706 | Intergenic | Intergenic | -7248 | NM_001013751 | 214292 | Mm.425290 | NM_001013751 | ENSMUSG00000085957 | Syna | Gm453|Gm52|syncytin-A | syncytin a
chr17-216 | chr17 | 35558214 | 35558416 | + | 10.2 | 0.722 | Intergenic | Intergenic | -3477 | NM_023124 | 15019 |  | NM_023124 |  | H2-Q8 | H-2Q8|MMS10-T|Ms10t|Qa-2|Qa-8|Qa8 | histocompatibility 2, Q region locus 8
chr8-647 | chr8 | 12561504 | 12561706 | + | 10.2 | 0.739 | Intergenic | Intergenic | -11444 | NM_024279 | 78634 | Mm.116871 | NM_024279 | ENSMUSG00000010435 | Spaca7 | 1700094C09Rik|MGC58425 | sperm acrosome associated 7
chr5-119 | chr5 | 52456246 | 52456448 | + | 10.2 | 0.722 | Intergenic | Intergenic | 125411 | NM_001042620 | 13204 | Mm.993 | NM_001042620 | ENSMUSG00000029169 | Dhx15 | DBP1|Ddx15|HRH2|MGC117685|mDEAH9 | DEAH (Asp-Glu-Ala-His) box polypeptide 15
chr11-260 | chr11 | 6079781 | 6079983 | + | 10.2 | 0.75 | [NAME], intron 2 of 5) | [NAME], intron 2 of 5) | -6548 | NR_029471 | 100042173 | Mm.441799 | NR_029471 |  | Rps15a-ps6 | Gm11968|OTTMUSG00000005107 | ribosomal protein S15A, pseudogene 6
chr17-153 | chr17 | 25934158 | 25934360 | + | 10.2 | 0.765 | promoter-TSS (NM_133719) | promoter-TSS (NM_133719) | -269 | [NAME] | 70083 | Mm.41925 | [NAME] | ENSMUSG00000002274 | Metrn | 1810034B16Rik|Hyrac | meteorin, glial cell differentiation regulator
chr9-166 | chr9 | 121365690 | 121365892 | + | 10.2 | 0.714 | intron (NM_175114, intron 13 of 15) | intron (NM_175114, intron 13 of 15) | 39016 | NM_031161 | 12424 | Mm.2619 | NM_031161 | [NAME] | Cck | - | cholecystokinin
chr11-262 | chr11 | 20553978 | 20554180 | + | 10.2 | 0.75 | Intergenic | Intergenic | 22099 | NM_001038625 | 58172 | Mm.339676 | NM_001038625 | ENSMUSG00000049800 | Sertad2 | AB041541|AU021878|Kiaa0127|SEI-2|Sei2|TRIP-Br2|mKIAA0127 | SERTA domain containing 2
chr11-355 | chr11 | 109223607 | 109223809 | + | 10.2 | 0.938 | promoter-TSS (NM_010303) | promoter-TSS (NM_010303) | -400 | NM_010303 | 14674 | Mm.193925 | NM_010303 | ENSMUSG00000020611 | Gna13 | AU024132|AU043124|Galpha13 | guanine nucleotide binding protein, alpha 13
chr19-115 | chr19 | 45234823 | 45235025 | + | 10.2 | 0.684 | Intergenic | Intergenic | 9719 | NM_021901 | 21908 | Mm.391203 | NM_021901 | ENSMUSG00000025215 | Tlx1 | Hox-11|Hox11 | T cell leukemia, homeobox 1
chr7-159 | chr7 | 54218761 | 54218963 | + | 10.2 | 0.636 | Intergenic | Intergenic | -4974 | NM_001040695 | 54122 | Mm.1999 | NM_016855 | ENSMUSG00000043262 | Uevld | 8430408E05Rik|Attp | UEV and lactate/malate dehyrogenase domains
chr8-633 | chr8 | 11608865 | 11609067 | + | 10.2 | 0.667 | Intergenic | RLTR44E|LTR|ERVK | 26070 | NR_030781 | 102334 | Mm.12459 | NM_001167967 | ENSMUSG00000031508 | Ankrd10 | 4833425P12Rik|AW549277 | ankyrin repeat domain 10
chr9-159 | chr9 | 108838330 | 108838532 | + | 10.2 | 0.737 | promoter-TSS (NM_025407) | promoter-TSS (NM_025407) | -230 | NM_025407 | 22273 | Mm.335460 | NM_025407 | ENSMUSG00000025651 | Uqcrc1 | 1110032G10Rik|MGC97899 | ubiquinol-cytochrome c reductase core protein 1
chr11-325 | chr11 | 97393626 | 97393828 | + | 10.2 | 0.765 | intron (NM_018873, intron 11 of 19) | intron (NM_018873, intron 11 of 19) | 42713 | NM_018873 | 56013 | Mm.342665 | NM_018873 | ENSMUSG00000038453 | Srcin1 | P140|SNIP|mKIAA1684|p140Cap | SRC kinase signaling inhibitor 1
chr16-78 | chr16 | 17282959 | 17283161 | + | 10.2 | 0.684 | intron (NM_001001983, intron 48 of 54) | intron (NM_001001983, intron 48 of 54) | 6667 | NM_177473 | 224019 | Mm.246388 | NM_177473 | ENSMUSG00000055692 | Tmem191c | 4933405M22Rik|D16Bwg1494e | [NAME] 191C
chr1-180 | chr1 | 60454138 | 60454340 | + | 10.2 | 0.867 | Intergenic | RMER1C|Other|Other | -12224 | NM_001198571 | 329165 | Mm.465571 | NM_001198570 | ENSMUSG00000026782 | Abi2 | 8430425M24Rik|AI839867|C130078H13|MGC90836|MGC90855 | abl-interactor 2
chr11-312 | chr11 | 82333188 | 82333390 | + | 10.2 | 0.684 | Intergenic | Intergenic | -113566 | NR_033582 | 791422 | Mm.341562 | NR_033582 |  | Gm11426 | OTTMUSG00000000913 | predicted gene 11426
chr12-911 | chr12 | 110322579 | 110322781 | + | 10.2 | 0.706 | Intergenic | Intergenic | -16253 | NM_001163175 | 380785 | Mm.342085 | NM_001163175 | ENSMUSG00000040867 | Begain | BM948371|Gm897 | brain-enriched guanylate kinase-associated
chr8-727 | chr8 | 75878241 | 75878443 | + | 10.2 | 0.667 | Intergenic | Intergenic | -1887 | NM_010687 | 16795 | Mm.324371 | NM_010687 | ENSMUSG00000004383 | Large | BPFD#36|Gyltl1a|Mbp-1|Mbp1|enr|fg|froggy|mKIAA0609|myd | like-glycosyltransferase
chr17-149 | chr17 | 24765781 | 24765983 | + | 10.2 | 0.611 | intron (NM_001039363, intron 5 of 39) | intron (NM_001039363, intron 5 of 39) | 3692 | NM_011647 | 22084 | Mm.30435 | NM_001039363 | ENSMUSG00000002496 | Tsc2 | Tcs2 | tuberous sclerosis 2
chr7-135 | chr7 | 25669472 | 25669674 | + | 10.2 | 0.875 | promoter-TSS (NM_023133) | promoter-TSS (NM_023133) | -160 | NM_023133 | 20085 | Mm.445088 | NM_023133 | ENSMUSG00000040952 | Rps19 | Dsk3|MGC107694 | ribosomal protein S19
chr2-116 | chr2 | 103636325 | 103636527 | + | 10.2 | 0.762 | [NAME] (NM_001111292, intron 1 of 16) | [NAME] (NM_001111292, intron 1 of 16) | 809 | NM_001111290 | 53872 | Mm.427589 | NM_001111289 | ENSMUSG00000027184 | Caprin1 | AL022980|Caprin-1|Gpiap|Gpiap1|Mmgpip137|P137|rng105 | cell cycle associated protein 1
chr13-109 | chr13 | 101002029 | 101002231 | + | 10.2 | 0.765 | [NAME] (NM_010870, intron 5 of 14) | Lx2|LINE|L1 | 15161 | NM_010870 | 17951 | Mm.290476 | NM_010870 | ENSMUSG00000071203 | Naip5 | Birc1e|Lgn1|Naip-rs3 | NLR family, apoptosis inhibitory protein 5
chr5-116 | chr5 | 37202737 | 37202939 | + | 10.2 | 0.778 | [NAME] (NM_008550, intron 15 of 18) | [NAME] (NM_008550, intron 15 of 18) | -14845 | NM_026242 | 67568 | Mm.332336 | NM_026242 | ENSMUSG00000055302 | Mrfap1 | 9130413I22Rik|AL022827|Pam14 | [NAME] family associated protein 1
chr5-176 | chr5 | 146576228 | 146576430 | + | 10.2 | 0.789 | Intergenic | RMER17D2|LTR|ERVK | 41121 | NM_177380 | 337924 | Mm.425301 | NM_177380 | ENSMUSG00000054417 | Cyp3a44 | - | cytochrome P450, family 3, subfamily a, polypeptide 44
chr12-971 | chr12 | 112412034 | 112412236 | + | 10.2 | 0.778 | [NAME] (NM_011632, intron 1 of 11) | [NAME] (NM_011632, intron 1 of 11) | 7376 | NM_001048206 | 22031 | Mm.27431 | NM_001048206 | ENSMUSG00000021277 | Traf3 | AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn | TNF receptor-associated factor 3
chr2-72 | chr2 | 4936693 | 4936895 | + | 10.2 | 0.812 | Intergenic | Intergenic | -2957 | NM_027290 | 70024 | Mm.447935 | NM_027290 | ENSMUSG00000026669 | Mcm10 | 2410041F14Rik|AU018508|C330019M07Rik|C79164 | minichromosome maintenance deficient 10 (S. cerevisiae)
chr16-96 | chr16 | 76236012 | 76236214 | + | 10.2 | 0.933 | Intergenic | LTR33|LTR|ERVL | 113255 | NR_040575 | 78215 | Mm.243885 | NR_040575 |  | 4930578N18Rik | - | RIKEN cDNA 4930578N18 gene
chr1-214 | chr1 | 137512498 | 137512700 | + | 10.2 | 0.737 | Intergenic | Intergenic | -30667 | NM_173437 | 215690 | Mm.34977 | NM_173437 | ENSMUSG00000009418 | [NAME] | 9530089B19|9930003A20Rik|C230080M11Rik|Pomfil3|Unc53h1|mKIAA1151|steerin-1 | neuron navigator 1
chr10-91 | chr10 | 41023702 | 41023904 | + | 10.2 | 0.684 | promoter-TSS (NM_133999) | promoter-TSS (NM_133999) | -756 | NM_133999 | 103199 | Mm.277242 | NM_133999 | ENSMUSG00000038417 | Fig4 | A530089I17Rik|AI326867|Sac3 | FIG4 homolog (S. cerevisiae)
chr8-815 | chr8 | 96439442 | 96439644 | + | 10.2 | 0.737 | [NAME] (NM_010308, intron 3 of 8) | [NAME] (NM_010308, intron 3 of 8) | 96997 | NM_011787 | 23802 | Mm.34641 | NM_011787 | ENSMUSG00000031751 | Amfr | gp78 | autocrine motility factor receptor
chr6-305 | chr6 | 117795572 | 117795774 | + | 10.2 | 0.75 | exon (NM_177684, exon 3 of 3) | exon (NM_177684, exon 3 of 3) | 4413 | NM_177684 | 232337 | Mm.290847 | NM_177684 | ENSMUSG00000059689 | Zfp637 | AI646709|BC021601|MGC54806|Znf32 | zinc finger protein 637
chr14-128 | chr14 | 63796975 | 63797177 | + | 10.2 | 0.6 | promoter-TSS (NM_010191) | promoter-TSS (NM_010191) | -446 | NM_010191 | 14137 | Mm.474432 | NM_010191 | ENSMUSG00000021273 | Fdft1 | SQS|SS | farnesyl diphosphate farnesyl transferase 1
chr2-84 | chr2 | 28956114 | 28956316 | + | 10.2 | 0.933 | Intergenic | Intergenic | -24297 | NM_198033 | 269254 | Mm.41867 | NM_198033 | ENSMUSG00000043535 | Setx | A130090N03|A930037J23Rik|AOA2|AW060766|Als4|SCAR1|Sen1|mKIAA0625 | senataxin
chr2-106 | chr2 | 35959061 | 35959263 | + | 10.2 | 0.8 | [NAME] (NM_001083125, intron 2 of 8) | CpG | 418 | NM_001083126 | 16874 | Mm.12881 | NM_001083125 | ENSMUSG00000026890 | [NAME] | Lhx6.1 | LIM homeobox protein 6
chr17-228 | chr17 | 48117849 | 48118051 | + | 10.2 | 0.765 | Intergenic | RSINE1|SINE|B4 | -56369 | NM_001110825 | 74123 | Mm.240062 | NM_001110824 | ENSMUSG00000023991 | Foxp4 | 1200010K03Rik|2310007G05Rik|mFKHLA | forkhead box P4
chr8-802 | chr8 | 92290373 | 92290575 | + | 10.2 | 0.6 | Intergenic | Intergenic | 581677 | NM_172913 | 244579 | Mm.302755 | NM_172913 | ENSMUSG00000043668 | Tox3 | 500-9|BC052044|C230068E13|CAGF9|Tnrc9 | TOX high mobility group box family member 3
chr2-85 | chr2 | 29195869 | 29196071 | + | 10.2 | 0.824 | Intergenic | RLTR9E|LTR|ERVK | -6386 | [NAME] | 68975 | Mm.330109 | [NAME] | ENSMUSG00000026799 | Med27 | 1500015J03Rik|2310042P07Rik|AA682045|Crsp8|D2Ertd434e | mediator complex subunit 27
chr6-410 | chr6 | 134990482 | 134990684 | + | 10.2 | 0.706 | Intergenic | Intergenic | -25097 | NM_181444 | 232431 | Mm.477015 | NM_181444 | ENSMUSG00000046733 | Gprc5a | Rai3|Raig1 | G protein-coupled receptor, family C, group 5, member A
chr5-162 | chr5 | 135211043 | 135211245 | + | 10.2 | 0.882 | [NAME] (NM_007925, intron 4 of 36) | (TG)n|Simple_repeat|Simple_repeat | 11980 | NM_007925 | 13717 | Mm.404771 | NM_007925 | ENSMUSG00000029675 | Eln | AI385707|AI480567|E030024M20Rik | [NAME]
chr3-97 | chr3 | 104930206 | 104930408 | + | 10.2 | 0.875 | Intergenic | MamRep38|DNA|hAT | 60545 | [NAME] | 75269 | Mm.307994 | [NAME] | ENSMUSG00000051788 | 4930564D02Rik | - | RIKEN cDNA 4930564D02 gene
chr4-231 | chr4 | 44025337 | 44025539 | + | 10.2 | 0.688 | promoter-TSS (NM_001080384) | promoter-TSS (NM_001080384) | -77 | NM_016760 | 12757 | [NAME] | NM_001080384 | ENSMUSG00000028478 | Clta | AV026556 | clathrin, light polypeptide (Lca)
chr6-427 | chr6 | 137928512 | 137928714 | + | 10.2 | 0.867 | Intergenic | Intergenic | 99824 | NM_177787 | 277898 | Mm.269823 | NM_177787 | ENSMUSG00000044378 | Slc15a5 | 9830102E05Rik | solute carrier family 15, member 5
chr8-982 | chr8 | 126261742 | 126261944 | + | 10.2 | 0.765 | intron (NR_040702, intron 3 of 3) | intron (NR_040702, intron 3 of 3) | 3985 | NR_040702 | 234863 | Mm.246601 | NR_040702 |  | 6030466F02Rik | - | RIKEN cDNA 6030466F02 gene
chr8-796 | chr8 | 91148465 | 91148667 | + | 10.2 | 0.722 | Intergenic | Intergenic | 11461 | NM_027840 | 71607 | Mm.270607 | NM_027840 | ENSMUSG00000031662 | Snx20 | 9130017C17Rik | sorting nexin 20
chr12-898 | chr12 | 109838748 | 109838950 | + | 10.2 | 0.938 | [NAME] (NM_001163394, intron 1 of 13) | ORR1D1|LTR|MaLR | -5127 | NM_001163395 | 14026 | Mm.238841 | NM_001163394 | ENSMUSG00000021262 | Evl | AI528774 | Ena-vasodilator stimulated phosphoprotein
chr2-130 | chr2 | 135609697 | 135609899 | + | 10.2 | 0.706 | [NAME] (NM_013829, intron 1 of 36) | [NAME] (NM_013829, intron 1 of 36) | 42232 | NM_013829 | 18798 | Mm.38009 | NM_013829 | ENSMUSG00000039943 | Plcb4 | A930039J07Rik|AI854601|C230058B11Rik | phospholipase C, beta 4
chr7-161 | chr7 | 57017637 | 57017839 | + | 10.2 | 0.684 | [NAME] (NM_001146052, intron 2 of 4) | B3A|SINE|B2 | 2856 | NM_001146052 | 53415 | Mm.20801 | NM_001146049 | ENSMUSG00000039745 | Htatip2 | AW111545|Cc3|Tip30 | HIV-1 tat interactive protein 2, homolog (human)
chr8-741 | chr8 | 81511122 | 81511324 | + | 10.2 | 0.727 | Intergenic | Lx7|LINE|L1 | -41113 | NM_178267 | 622675 | Mm.48724 | NM_178267 | ENSMUSG00000071064 | Zfp827 | 2810449M09Rik|D630040G17Rik|Znf827 | zinc finger protein 827
chr4-349 | chr4 | 128453925 | 128454127 | + | 10.2 | 0.722 | intron (NM_001081098, intron 8 of 8) | intron (NM_001081098, intron 8 of 8) | 17524 | NM_001009819 | 215493 | Mm.300900 | NM_001009819 | ENSMUSG00000028794 | A3galt2 | Gm433|iGb3 | alpha 1,3-galactosyltransferase 2 (isoglobotriaosylceramide synthase)
chr4-362 | chr4 | 133965311 | 133965513 | + | 10.2 | 0.688 | [NAME] (NM_133880, intron 4 of 10) | B3A|SINE|B2 | 13137 | NM_133880 | 100163 | Mm.22116 | NM_133880 | ENSMUSG00000037366 | Pafah2 | 2310074E22Rik|AI507170 | platelet-activating factor acetylhydrolase 2
chr6-453 | chr6 | 144993506 | 144993708 | + | 10.2 | 0.722 | intron (NM_007532, intron 2 of 10) | intron (NM_007532, intron 2 of 10) | 3725 | NM_001024468 | 12035 | Mm.4606 | NM_001024468 | ENSMUSG00000030268 | [NAME] | BCATc|Eca39 | branched chain aminotransferase 1, cytosolic
chr18-62 | chr18 | 35982653 | 35982855 | + | 10.2 | 0.722 | Intergenic | Intergenic | -6718 | NM_133687 | 67393 | Mm.94560 | NM_133687 | ENSMUSG00000046668 | Cxxc5 | 4930415K17Rik|MGC101987 | CXXC finger 5
chr6-281 | chr6 | 113690176 | 113690378 | + | 10.2 | 0.684 | [NAME] (NM_024206, intron 1 of 8) | [NAME] (NM_024206, intron 1 of 8) | 398 | NM_024206 | 110379 | Mm.29296 | NM_024206 | ENSMUSG00000030298 | Sec13 | 1110003H02Rik|Sec13l1|Sec13r | SEC13 homolog (S. cerevisiae)
chr1-222 | chr1 | 159051309 | 159051511 | + | 10.2 | 0.882 | Intergenic | Intergenic | -12634 | NM_028540 | 73435 | Mm.116705 | NM_028540 | ENSMUSG00000026592 | 1700057K13Rik | MGC118391|MGC144290 | RIKEN cDNA 1700057K13 gene
chr15-82 | chr15 | 77669982 | 77670184 | + | 10.2 | 0.706 | [NAME] (NM_022410, intron 1 of 40) | [NAME] (NM_022410, intron 1 of 40) | 2462 | NM_022410 | 17886 | Mm.29677 | NM_022410 | [NAME] | [NAME] | C80049|D0Jmb2|E030044M24Rik|Fltn|Myhn-1|Myhn1|NMHC II-A|NMHCIIA|NMMHC II-a|NMMHC-A|NMMHC-IIA|TU72.6 | [NAME], heavy polypeptide 9, non-muscle
[NAME] | chr14 | 106258708 | 106258910 | + | 10.2 | 0.867 | Intergenic | RMER10A|LTR|ERVL | 37227 | NM_011897 | 24064 | Mm.489870 | NM_011897 | ENSMUSG00000022114 | Spry2 | sprouty2 | sprouty homolog 2 (Drosophila)
chr3-125 | chr3 | 137358329 | 137358531 | + | 10.2 | 0.65 | Intergenic | Intergenic | 71794 | NM_030143 | 73284 | Mm.250841 | NM_030143 | ENSMUSG00000046818 | Ddit4l | 1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1 | DNA-damage-inducible transcript 4-like
chr10-136 | chr10 | 94704976 | 94705178 | + | 10.2 | 0.667 | intron (NM_009950, intron 2 of 2) | MTD|LTR|MaLR | 81654 | NM_009950 | 12905 | Mm.473739 | NM_009950 | ENSMUSG00000045867 | Cradd | RAIDD | [NAME] and RIPK1 domain containing adaptor with death domain
chr8-644 | chr8 | 12425999 | 12426201 | + | 10.2 | 0.933 | non-coding (NR_027975, exon 3 of 8) | non-coding (NR_027975, exon 3 of 8) | 30581 | NM_009233 | 20664 | Mm.39088 | NM_009233 |  | Sox1 | BB176347|Sox-1 | SRY-box containing gene 1
chr8-877 | chr8 | 113933023 | 113933225 | + | 10.2 | 0.778 | Intergenic | Intergenic | -15403 | NM_178086 | 338521 | Mm.41083 | NM_178086 | ENSMUSG00000033579 | Fa2h | FAAH|Faxdc1|G630055L08Rik | fatty acid 2-hydroxylase
chr7-131 | chr7 | 6237839 | 6238041 | + | 10.2 | 0.588 | promoter-TSS (NM_001024928) | promoter-TSS (NM_001024928) | -242 | NM_001024928 | 384763 | Mm.276279 | NM_001024928 | ENSMUSG00000054893 | Zfp667 | A830025F02Rik|Mip1|ZNF667 | zinc finger protein 667
chr8-767 | chr8 | 87471226 | 87471428 | + | 10.2 | 0.65 | intron (NM_144929, intron 1 of 5) | intron (NM_144929, intron 1 of 5) | 437 | NM_144929 | 234542 | Mm.461701 | NM_144929 | ENSMUSG00000048617 | Rtbdn | A330096I21Rik|BC022744|MGC31644|MGC38683|MGC38855|Rtbnd | retbindin
chr12-724 | chr12 | 99190443 | 99190645 | + | 10.2 | 0.778 | Intergenic | Intergenic | 307003 | NM_008079 | 14420 | Mm.5120 | NM_008079 | ENSMUSG00000021003 | Galc | 2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher | galactosylceramidase
chr11-373 | chr11 | 116933672 | 116933874 | + | 10.2 | 0.545 | Intergenic | PB1|SINE|Alu | -4324 | NR_027059 | 76972 | Mm.309167 | NR_027059 |  | 2810008D09Rik | - | RIKEN cDNA 2810008D09 gene
chr8-785 | chr8 | 90452653 | 90452855 | + | 10.2 | 0.619 | intron (NM_033327, intron 1 of 7) | MIRc|SINE|MIR | 30740 | NM_033327 | 94187 | [NAME] | NM_033327 | ENSMUSG00000045333 | Zfp423 | Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12 | zinc finger protein 423
chr6-434 | chr6 | 140966130 | 140966332 | + | 10.2 | 0.867 | Intergenic | Intergenic | -231559 | NM_018779 | 54611 | Mm.485878 | NM_018779 | ENSMUSG00000041741 | Pde3a | A930022O17Rik|C87899 | phosphodiesterase 3A, cGMP inhibited
chr8-1019 | chr8 | 129778567 | 129778769 | + | 10.2 | 0.882 | intron (NM_033620, intron 2 of 24) | intron (NM_033620, intron 2 of 24) | -44844 | NM_001013581 | 93742 | Mm.299254 | NM_001013580 | ENSMUSG00000025812 | Pard3 | AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3|Pard3a | par-3 (partitioning defective 3) homolog (C. elegans)
chr10-128 | chr10 | 80556357 | 80556559 | + | 10.2 | 0.7 | [NAME] (NM_145365, intron 1 of 11) | L2b|LINE|L2 | 5159 | NM_145365 | 208677 | Mm.294693 | NM_145365 | ENSMUSG00000035041 | Creb3l3 | BC010786|CREB-H|D10Bur1e | cAMP responsive element binding protein 3-like 3
chr8-622 | chr8 | 10585198 | 10585400 | + | 10.2 | 0.812 | [NAME] (NM_001081397, intron 33 of 35) | [NAME] (NM_001081397, intron 33 of 35) | 297155 | NR_040705 | 320014 | Mm.403203 | NR_040705 |  | B930025P03Rik | - | RIKEN cDNA B930025P03 gene
chr11-308 | chr11 | 79451841 | 79452043 | + | 10.2 | 0.765 | intron (NM_175543, intron 3 of 14) | intron (NM_175543, intron 3 of 14) | -15277 | NR_003283 | 790912 | Mm.447313 | NR_003283 |  | [NAME] | OTTMUSG00000000185 | predicted gene 11202
chr15-62 | chr15 | 32728940 | 32729142 | + | 10.2 | 0.75 | Intergenic | L1VL2|LINE|L1 | -121437 | NM_008304 | 15529 | Mm.234266 | NM_008304 | ENSMUSG00000022261 | Sdc2 | 4833414L08Rik|AA960457|Hspg1|Synd2|syndecan-2 | syndecan 2
chr8-818 | chr8 | 97058580 | 97058782 | + | 10.2 | 0.812 | [NAME] (NM_153507, intron 1 of 15) | [NAME] (NM_153507, intron 1 of 15) | 1753 | NM_153507 | 234577 | Mm.291815 | NM_153507 | ENSMUSG00000034361 | Cpne2 | 3322401K10Rik|MGC30751|MGC37787 | copine II
chr8-736 | chr8 | 80139203 | 80139405 | + | 10.2 | 0.647 | Intergenic | RMER1C|Other|Other | -4752 | NM_145599 | 234463 | Mm.449857 | NM_145599 | ENSMUSG00000031617 | Tmem184c | 8430433H16Rik|AI645453|AL033298|BC004056|MGC8158|Tmem34 | [NAME] 184C
chr3-89 | chr3 | 99022021 | 99022223 | + | 10.2 | 0.875 | 3' UTR (NM_027462, exon 6 of 6) | 3' UTR (NM_027462, exon 6 of 6) | -35561 | NM_009323 | 21384 | Mm.88761 | NM_009323 | ENSMUSG00000027868 | Tbx15 | Tbx14|Tbx8|de | T-box 15
chr8-893 | chr8 | 119212151 | 119212353 | + | 10.2 | 0.75 | [NAME] (NM_029441, intron 1 of 6) | [NAME] (NM_029441, intron 1 of 6) | 44639 | NM_029441 | 75796 | Mm.159575 | NM_029441 | ENSMUSG00000031758 | Cdyl2 | 1700029M19Rik|4930453I21Rik|Gm20194 | chromodomain protein, Y chromosome-like 2
chr3-113 | chr3 | 131019051 | 131019253 | + | 10.2 | 0.706 | Intergenic | Intergenic | -13007 | [NAME] | 71519 | Mm.473179 | [NAME] | ENSMUSG00000027983 | Cyp2u1 | 8430436A10Rik | cytochrome P450, family 2, subfamily u, polypeptide 1
chr8-779 | chr8 | 89713308 | 89713510 | + | 10.2 | 0.737 | [NAME] (NR_040697, intron 3 of 6) | MTD|LTR|MaLR | 10340 | [NAME] | 100038706 | Mm.334690 | [NAME] |  | Gm10637 | ENSMUSG00000074176 | predicted gene 10637
chr11-360 | chr11 | 114400265 | 114400467 | + | 10.2 | 0.765 | Intergenic | Intergenic | -90192 | NR_027643 | 319819 | Mm.50754 | NR_027643 |  | 4932435O22Rik | - | RIKEN cDNA 4932435O22 gene
chr1-208 | chr1 | 121026933 | 121027135 | + | 10.2 | 0.824 | Intergenic | ORR1E|LTR|MaLR | -76838 | NM_001081125 | 14633 | Mm.273292 | NM_001081125 | ENSMUSG00000048402 | Gli2 | AW546128 | GLI-Kruppel family member [NAME]
chr7-177 | chr7 | 112788445 | 112788647 | + | 10.2 | 0.688 | promoter-TSS (NM_019502) | promoter-TSS (NM_019502) | 384 | NM_029802 | 76932 | Mm.41637 | NM_029802 | ENSMUSG00000030881 | Arfip2 | 2310002N04Rik|POR|Por1 | ADP-ribosylation factor interacting protein 2
chr8-618 | chr8 | 8895595 | 8895797 | + | 10.2 | 0.545 | Intergenic | Intergenic | -205159 | NM_176849 | 234023 | Mm.251655 | NM_176849 | ENSMUSG00000040459 | Arglu1 | 9430010O03Rik|C130008N12 | arginine and glutamate rich 1
chrX-45 | chrX | 136991600 | 136991802 | + | 10.2 | 0.571 | intron (NM_021463, intron 1 of 6) | CpG | 559 | NM_021463 | 19139 | Mm.287178 | NM_021463 | ENSMUSG00000031432 | Prps1 | 2310010D17Rik|C76571|C76678|PRS-I|Prps-1 | phosphoribosyl pyrophosphate synthetase 1
chr17-234 | chr17 | 63827530 | 63827732 | + | 10.2 | 0.722 | [NAME] (NM_015794, intron 3 of 8) | L1MCa|LINE|L1 | 22298 | NM_015794 | 50758 | Mm.136366 | NM_177143 | ENSMUSG00000023965 | Fbxl17 | 6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13 | F-box and leucine-rich repeat protein 17
chr10-112 | chr10 | 75360884 | 75361086 | + | 10.2 | 0.75 | intron (NM_011418, intron 7 of 8) | intron (NM_011418, intron 7 of 8) | 4842 | NM_024440 | 70377 | Mm.275878 | NM_024440 | ENSMUSG00000009092 | Derl3 | 1810006I20Rik|1810063P04Rik|IZP6|MGC118672|MGC144274|MGC144275|derlin-3 | Der1-like domain family, member 3
chr14-114 | chr14 | 26582235 | 26582437 | + | 10.2 | 0.75 | [NAME] (NM_001101433, intron 1 of 3) | [NAME] (NM_001101433, intron 1 of 3) | 6006 | NM_001101433 | 71918 | Mm.41904 | NM_001101433 | ENSMUSG00000055538 | Zcchc24 | 2310047A01Rik | zinc finger, CCHC domain containing 24
chr8-944 | chr8 | 123766801 | 123767003 | + | 10.2 | 0.867 | Intergenic | Intergenic | 115317 | NM_008024 | 14241 | Mm.5111 | NM_008024 |  | Foxl1 | FREAC7|Fkh6|fkh-6 | forkhead box L1
chr12-766 | chr12 | 103306264 | 103306466 | + | 10.2 | 0.682 | Intergenic | Intergenic | -61264 | NM_172152 | 238384 | Mm.312448 | NM_172152 | ENSMUSG00000041771 | Slc24a4 | A930002M03Rik|AW492432|NCKX4 | solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
chr8-635 | chr8 | 11728744 | 11728946 | + | 10.2 | 0.706 | intron (NM_001113517, intron 1 of 18) | intron (NM_001113517, intron 1 of 18) | 740 | NM_001113517 | 54126 | Mm.244068 | NM_001113517 | ENSMUSG00000031511 | Arhgef7 | Cool|PIX|Pak3bp|betaPix|betaPix-b|betaPix-c|cool-1|mKIAA0142|p85Cool1|p85SPR | Rho guanine nucleotide exchange factor (GEF7)
chr6-391 | chr6 | 127938256 | 127938458 | + | 10.2 | 0.714 | [NAME] (NM_175414, intron 3 of 8) | [NAME] (NM_175414, intron 3 of 8) | 100717 | NM_026743 | 68498 | Mm.174368 | NM_026743 | ENSMUSG00000030351 | Tspan11 | 1110014F12Rik|AU067806 | tetraspanin 11
chr12-871 | chr12 | 108499557 | 108499759 | + | 10.2 | 0.714 | Intergenic | Intergenic | 474040 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr6-396 | chr6 | 128351609 | 128351811 | + | 10.2 | 0.824 | intron (NM_021717, intron 1 of 5) | intron (NM_021717, intron 1 of 5) | 1926 | [NAME] | 60345 | Mm.269883 | [NAME] | ENSMUSG00000001520 | Nrip2 | AW491344|MGC144354|NIX1 | nuclear receptor interacting protein 2
chr5-171 | chr5 | 140749836 | 140750038 | + | 10.2 | 0.812 | [NAME] (NM_010752, intron 9 of 17) | [NAME] (NM_010752, intron 9 of 17) | 47569 | NM_010752 | 17120 | Mm.27250 | NM_010752 | ENSMUSG00000029554 | Mad1l1 | AI173502|AW550425|Mad1 | MAD1 mitotic arrest deficient 1-like 1
chr14-143 | chr14 | 99268659 | 99268861 | + | 10.2 | 0.706 | Intergenic | Intergenic | 176595 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr8-715 | chr8 | 41802788 | 41802990 | + | 10.2 | 0.941 | Intergenic | Lx7|LINE|L1 | -34673 | NM_011781 | 23793 | Mm.483208 | NM_011781 | ENSMUSG00000071937 | Adam25 | - | a disintegrin and metallopeptidase domain 25 (testase 2)
chr11-272 | chr11 | 54836621 | 54836823 | + | 10.2 | 0.765 | intron (NM_001110211, intron 1 of 24) | intron (NM_001110211, intron 1 of 24) | 10251 | NM_001110211 | 11749 | Mm.265347 | NM_001110211 | ENSMUSG00000018340 | Anxa6 | AW107198|Anx6|AnxVI|Cabm|Camb | annexin A6
chr8-889 | chr8 | 117003829 | 117004031 | + | 10.2 | 0.824 | [NAME] (NM_019573, intron 4 of 8) | MTD|LTR|MaLR | 40378 | NM_019573 | 80707 | Mm.440420 | NM_019573 | ENSMUSG00000004637 | Wwox | 5330426P09Rik|9030416C10Rik|WOX1 | WW domain-containing oxidoreductase
chr11-292 | chr11 | 69809030 | 69809232 | + | 10.2 | 0.789 | promoter-TSS (NM_030064) | promoter-TSS (NM_030064) | -142 | NM_030064 | 78246 | Mm.20805 | NM_030064 | ENSMUSG00000018572 | Phf23 | 2410141M05Rik|JUNE-1|RP23-172M21.13 | PHD finger protein 23
chr7-197 | chr7 | 147301850 | 147302052 | + | 10.2 | 0.722 | [NAME] (NM_053119, intron 1 of 7) | [NAME] (NM_053119, intron 1 of 7) | 371 | NM_053119 | 93747 | Mm.24452 | NM_053119 | ENSMUSG00000025465 | Echs1 | C80529 | enoyl Coenzyme A hydratase, short chain, 1, mitochondrial
chr3-110 | chr3 | 130509107 | 130509309 | + | 10.2 | 0.833 | Intergenic | L1_Mur3|LINE|L1 | -75961 | NM_001199350 | 619547 | Mm.391636 | NM_001199350 |  | Rpl34-ps1 | EG619547|ENSMUSG00000068396|Gm10239|MGC103270|MGC117759 | ribosomal protein L34, pseudogene 1
chr8-717 | chr8 | 50722980 | 50723182 | + | 10.2 | 0.75 | Intergenic | Intergenic | -730385 | NR_046067 | 100039954 | Mm.400419 | NR_046067 |  | Gm2516 | - | predicted gene 2516
chr8-973 | chr8 | 125686284 | 125686486 | + | 10.2 | 0.933 | Intergenic | B1_Mm|SINE|Alu | -4205 | NM_020564 | 57429 | Mm.6562 | NM_020564 | ENSMUSG00000000739 | Sult5a1 | Sult-x1|Sultx1 | sulfotransferase family 5A, member 1
chr18-52 | chr18 | 12260721 | 12260923 | + | 10.2 | 0.722 | [NAME] (NM_178801, intron 4 of 14) | [NAME] (NM_178801, intron 4 of 14) | 19140 | NM_178801 | 338363 | Mm.271567 | NM_178801 | ENSMUSG00000049411 | Tmem241 | 6030446N20Rik | [NAME] 241
chr3-82 | chr3 | 95695198 | 95695400 | + | 10.2 | 0.789 | intron (NM_153513, intron 1 of 4) | ID_B1|SINE|B4 | 554 | NM_153513 | 229600 | Mm.89556 | NM_153513 | ENSMUSG00000038543 | BC028528 | L259|MGC41379 | cDNA sequence BC028528
chr18-73 | chr18 | 64958430 | 64958632 | + | 10.2 | 0.867 | Intergenic | ORR1B1|LTR|MaLR | -88879 | NM_001114386 | 83814 | Mm.98668 | NM_001114386 | ENSMUSG00000024589 | Nedd4l | 1300012C07Rik|Nedd4-2|Nedd4b | neural precursor cell expressed, developmentally down-regulated gene 4-like
chr8-851 | chr8 | 108842196 | 108842398 | + | 10.2 | 0.824 | [NAME], intron 1 of 8) | [NAME], intron 1 of 8) | 19591 | NM_021491 | 58994 | Mm.23298 | NM_021491 | ENSMUSG00000031906 | Smpd3 | 4631433G07Rik|AI427456|AW537966|fro|nSMase2 | sphingomyelin phosphodiesterase 3, neutral
chr5-173 | chr5 | 143916476 | 143916678 | + | 10.2 | 0.833 | Intergenic | LSU-rRNA_Hsa|rRNA|rRNA | 10853 | NR_040424 | 100042605 | Mm.332809 | NR_040424 |  | Gm3925 | - | predicted gene 3925
chr4-262 | chr4 | 106235482 | 106235684 | + | 10.2 | 0.619 | [NAME] (NM_053272, intron 1 of 8) | [NAME] (NM_053272, intron 1 of 8) | 1940 | NM_053272 | 74754 | Mm.133370 | NM_053272 | [NAME] | Dhcr24 | 2310076D10Rik|5830417J06Rik|mKIAA0018 | 24-dehydrocholesterol reductase
chr8-700 | chr8 | 25634653 | 25634855 | + | 10.2 | 0.706 | Intergenic | Intergenic | 52051 | NM_145949 | 209176 | Mm.219580 | NM_145949 | ENSMUSG00000031549 | Ido2 | AI265623|C230043N17Rik|Ido-2|Indol1|MGC31194 | indoleamine 2,3-dioxygenase 2
chr10-141 | chr10 | 116611635 | 116611837 | + | 10.2 | 0.722 | Intergenic | Intergenic | -26206 | NM_177798 | 327826 | Mm.135965 | NM_177798 | ENSMUSG00000020170 | Frs2 | 4732458E18|C330018A15Rik|Frs2alpha|SNT1 | fibroblast growth factor receptor substrate 2
chr6-449 | chr6 | 144816678 | 144816880 | + | 10.2 | 0.765 | Intergenic | Intergenic | 180553 | NM_001024468 | 12035 | Mm.4606 | NM_001024468 | ENSMUSG00000030268 | [NAME] | BCATc|Eca39 | branched chain aminotransferase 1, cytosolic
chr6-273 | chr6 | 113256951 | 113257153 | + | 10.2 | 0.722 | promoter-TSS (NM_030178) | promoter-TSS (NM_030178) | -139 | NM_030178 | 78783 | Mm.449928 | NM_030178 | ENSMUSG00000001632 | Brpf1 | 4833438B11Rik|4930540D11Rik|Brpf2 | bromodomain and PHD finger containing, 1
chr17-152 | chr17 | 25716518 | 25716720 | + | 10.2 | 0.75 | [NAME] of 8) | [NAME] of 8) | 500 | NR_045520 | 76483 | Mm.12787 | NM_029624 | ENSMUSG00000002279 | Lmf1 | 2400010G15Rik|AW822050|Tmem112|cld | [NAME] factor 1
chr11-277 | chr11 | 59057882 | 59058084 | + | 10.2 | 0.579 | Intergenic | Intergenic | -16214 | NM_007476 | 11840 | Mm.371546 | NM_001130408 | ENSMUSG00000048076 | Arf1 | - | ADP-ribosylation factor 1
chr3-131 | chr3 | 139060129 | 139060331 | + | 10.2 | 0.688 | [NAME] (NM_198659, intron 10 of 13) | [NAME] (NM_198659, intron 10 of 13) | 191373 | NM_198659 | 381476 | Mm.188334 | NM_198659 | ENSMUSG00000047940 | B930007M17Rik | Gm1017 | RIKEN cDNA B930007M17 gene
chr3-62 | chr3 | 30806079 | 30806281 | + | 10.2 | 0.824 | 3' UTR (NM_001165954, exon 15 of 15) | 3' UTR (NM_001165954, exon 15 of 15) | 51308 | NM_027965 | 71862 | [NAME] | NM_001134385 | ENSMUSG00000037661 | Gpr160 | 1700025D19Rik|GPCR150 | G protein-coupled receptor 160
chr12-710 | chr12 | 92584400 | 92584602 | + | 10.2 | 0.636 | [NAME] (NM_181815, intron 7 of 25) | [NAME] (NM_181815, intron 7 of 25) | 38348 | NM_181815 | 75216 | Mm.312204 | NM_181815 | ENSMUSG00000061533 | 4930534B04Rik | 5430424K18Rik|AI449708|AI480494|Cep128|E230024F20 | RIKEN cDNA 4930534B04 gene
chr3-80 | chr3 | 94966500 | 94966702 | + | 10.2 | 0.722 | Intergenic | Intergenic | -1695 | NM_011351 | 20360 | Mm.23662 | NM_011351 | ENSMUSG00000038777 | Sema6c | Semay|mKIAA1869 | sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C
chr2-97 | chr2 | 31910855 | 31911057 | + | 10.2 | 0.706 | Intergenic | Intergenic | 28269 | NM_175511 | 241303 | Mm.250441 | NM_175511 | ENSMUSG00000050592 | Fam78a | A130092J06Rik | family with sequence similarity 78, member A
chr1-177 | chr1 | 37145616 | 37145818 | + | 10.2 | 0.812 | Intergenic | Intergenic | -130389 | NM_009918 | 12790 | Mm.214224 | NM_009918 | ENSMUSG00000026114 | Cnga3 | CNG3 | cyclic nucleotide gated channel alpha 3
chr6-261 | chr6 | 34604497 | 34604699 | + | 10.2 | 0.867 | Intergenic | Lx4A|LINE|L1 | -54846 | NM_145575 | 109624 | Mm.482600 | NM_145575 | ENSMUSG00000029761 | Cald1 | 4833423D12Rik|AI195384|AV071549|AW536160|C920027I18Rik|MGC30319 | caldesmon 1
chr3-92 | chr3 | 104259397 | 104259599 | + | 10.2 | 0.938 | 3' UTR (NM_001025067, exon 18 of 18) | 3' UTR (NM_001025067, exon 18 of 18) | 56281 | NM_001025067 | 269473 | Mm.34855 | NM_001025067 | ENSMUSG00000032913 | Lrig2 | 4632419I10Rik|BB096938 | leucine-rich repeats and immunoglobulin-like domains 2
chr6-351 | chr6 | 124902833 | 124903035 | + | 10.2 | 0.65 | Intergenic | Intergenic | 12481 | NM_012003 | 26894 | Mm.244536 | NM_001164089 | ENSMUSG00000030127 | Cops7a | D6Ertd35e | COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
chr6-284 | chr6 | 114164606 | 114164808 | + | 10.2 | 0.722 | [NAME] (NM_172890, intron 6 of 13) | [NAME] (NM_172890, intron 6 of 13) | -67922 | NM_178703 | 232333 | Mm.5260 | NM_178703 | ENSMUSG00000030310 | Slc6a1 | A730043E01|GABATHG|GABATR|GAT-1|Gabt|Gabt1|Gat1|XT-1|Xtrp1 | solute carrier family 6 (neurotransmitter transporter, GABA), member 1
chr11-332 | chr11 | 97855548 | 97855750 | + | 10.2 | 0.636 | intron (NM_207231, intron 3 of 5) | intron (NM_207231, intron 3 of 5) | 1838 | NM_207231 | 217151 | Mm.277896 | NM_207231 | ENSMUSG00000038352 | Arl5c | Arl12|BC065791|MGC73657 | ADP-ribosylation factor-like 5C
chr6-299 | chr6 | 116147650 | 116147852 | + | 10.2 | 0.882 | Intergenic | B3|SINE|B2 | -4359 | NM_177412 | 330401 | Mm.477923 | NM_177412 | ENSMUSG00000030126 | Tmcc1 | 3632431M01Rik|mKIAA0779 | [NAME] and coiled coil domains 1
chr4-394 | chr4 | 155107443 | 155107645 | + | 10.2 | 0.778 | [NAME] (NM_026899, intron 4 of 4) | [NAME] (NM_026899, intron 4 of 4) | -1369 | NM_001101506 | 381582 | [NAME] | NM_001101506 | ENSMUSG00000084845 | Tmem240 | EG381582|Gm5151 | [NAME] 240
chr3-90 | chr3 | 101887475 | 101887677 | + | 10.2 | 0.765 | Intergenic | Intergenic | -2857 | NM_009814 | 12373 | Mm.15343 | NM_009814 | ENSMUSG00000027861 | Casq2 | [NAME] | calsequestrin 2
chr8-752 | chr8 | 86277675 | 86277877 | + | 10.2 | 0.867 | Intergenic | Intergenic | -12566 | NM_001163031 | 26364 | Mm.334648 | NM_001163029 | ENSMUSG00000002885 | Cd97 | AA409984|TM7LN1 | CD97 antigen
chr14-107 | chr14 | 9046213 | 9046415 | + | 10.2 | 0.867 | promoter-TSS (NM_027782) | promoter-TSS (NM_027782) | -348 | NM_027782 | 71393 | Mm.292712 | NM_027782 | ENSMUSG00000021752 | Kctd6 | 5430433B02Rik|AU044285 | potassium channel tetramerisation domain containing 6
chr5-138 | chr5 | 110954044 | 110954246 | + | 10.2 | 0.684 | Intergenic | Intergenic | -19219 | NM_198306 | 231605 | Mm.275748 | NM_001122639 | ENSMUSG00000033316 | Galnt9 | 6430598F23|GalNAc-T9 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 9
chr2-121 | chr2 | 127950727 | 127950929 | + | 10.2 | 0.727 | promoter-TSS (NM_207680) | promoter-TSS (NM_207680) | -946 | NM_207681 | 12125 | Mm.453214 | NM_009754 | ENSMUSG00000027381 | Bcl2l11 | 1500006F24Rik|Bim|Bod | BCL2-like 11 (apoptosis facilitator)
chr11-268 | chr11 | 49659494 | 49659696 | + | 10.2 | 0.481 | promoter-TSS (NM_207692) | promoter-TSS (NM_207692) | -658 | NM_001163671 | 26420 | [NAME] | NM_001163671 | ENSMUSG00000020366 | Mapk9 | AI851083|JNK2|Prkm9|p54aSAPK | mitogen-activated protein kinase 9
chr9-113 | chr9 | 29882839 | 29883041 | + | 10.2 | 0.833 | Intergenic | Intergenic | -112226 | NM_172290 | 235106 | [NAME] | NM_172290 | ENSMUSG00000059974 | Ntm | 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 | neurotrimin
chr13-102 | chr13 | 59012953 | 59013155 | + | 10.2 | 0.778 | [NAME] (NM_001025074, intron 12 of 17) | [NAME] (NM_001025074, intron 12 of 17) | 103860 | [NAME] | 18212 | Mm.130054 | [NAME] | ENSMUSG00000055254 | Ntrk2 | AI848316|C030027L06Rik|Tkrb|trkB | neurotrophic tyrosine kinase, receptor, type 2
chr2-109 | chr2 | 69523316 | 69523518 | + | 10.2 | 0.667 | Intergenic | Intergenic | 15240 | NM_001081087 | 228003 | Mm.178784 | NM_001081087 | ENSMUSG00000075307 | Kbtbd10 | Gm112|SARCOSIN | kelch repeat and BTB (POZ) domain containing 10
chr8-639 | chr8 | 12111920 | 12112122 | + | 10.2 | 0.7 | Intergenic | Intergenic | 271500 | NM_029326 | 75528 | Mm.440342 | NM_029326 | ENSMUSG00000031512 | 1700018L24Rik | TEX29 | RIKEN cDNA 1700018L24 gene
chr15-81 | chr15 | 76491806 | 76492008 | + | 10.2 | 0.706 | intron (NM_010630, intron 3 of 17) | intron (NM_010630, intron 3 of 17) | 836 | NM_010630 | 16581 | Mm.378950 | NM_010630 | ENSMUSG00000004187 | Kifc2 | - | [NAME] member C2
chr6-262 | chr6 | 35127296 | 35127498 | + | 10.2 | 0.812 | promoter-TSS (NM_027513) | promoter-TSS (NM_027513) | -219 | NM_027513 | 70699 | Mm.261208 | NM_027513 | ENSMUSG00000038759 | Nup205 | 3830404O05Rik|AV248391|mKIAA0225 | nucleoporin 205
chr17-211 | chr17 | 34093214 | 34093416 | + | 10.2 | 0.722 | promoter-TSS (NM_011296) | promoter-TSS (NM_011296) | 488 | NM_172620 | 224705 | [NAME] | XM_003689309 | ENSMUSG00000024319 | Vps52 | ARE1|D130068D18|D430041K17Rik|Sacm2l | vacuolar protein sorting 52 (yeast)
chr19-111 | chr19 | 44814022 | 44814224 | + | 10.2 | 0.778 | Intergenic | Intergenic | -17761 | NM_011037 | 18504 | Mm.192158 | NM_011037 | ENSMUSG00000004231 | [NAME] | Opdc|Pax-2 | paired box gene 2
chr4-357 | chr4 | 131735079 | 131735281 | + | 10.2 | 0.789 | Intergenic | B4A|SINE|B4 | 32991 | NM_145393 | 213541 | Mm.23998 | NM_145393 | ENSMUSG00000040025 | Ythdf2 | 9430020E02Rik|HGRG8|NY-REN-2 | YTH domain family 2
chr10-139 | chr10 | 111018225 | 111018427 | + | 10.2 | 0.706 | Intergenic | Intergenic | 13003 | NR_045344 | 71321 | Mm.410785 | NR_045344 |  | 4933440J02Rik | - | RIKEN cDNA 4933440J02 gene
chr2-157 | chr2 | 180010625 | 180010827 | + | 10.2 | 0.619 | Intergenic | Intergenic | -2556 | NM_145851 | 252966 | [NAME] | NM_145851 | ENSMUSG00000038990 | Cables2 | ik3-2 | CDK5 and Abl enzyme substrate 2
chr6-402 | chr6 | 133788382 | 133788584 | + | 10.2 | 0.632 | Intergenic | L1Md_F3|LINE|L1 | 15202 | NM_010594 | 16483 | Mm.13052 | NM_010594 | ENSMUSG00000032758 | Kap | AW146435|FKSG22 | [NAME] regulated protein
chr11-366 | chr11 | 115796636 | 115796838 | + | 10.2 | 0.933 | exon (NM_020483, exon 2 of 11) | exon (NM_020483, exon 2 of 11) | 1764 | NM_020483 | 57230 | Mm.267810 | NM_020483 | ENSMUSG00000020755 | Sap30bp | 2700016D05Rik|Hcngp | SAP30 binding protein
chr9-165 | chr9 | 120747657 | 120747859 | + | 10.2 | 0.833 | Intergenic | B3|SINE|B2 | 76610 | NR_040742 | 76402 | Mm.436588 | NR_040742 |  | 1700020M21Rik | - | RIKEN cDNA 1700020M21 gene
chr10-114 | chr10 | 77440781 | 77440983 | + | 10.2 | 0.75 | promoter-TSS (NM_026431) | promoter-TSS (NM_026431) | -513 | NM_026431 | 67884 | Mm.297512 | NM_026431 | ENSMUSG00000020284 | 1810043G02Rik | AV026620|D10Jhu13e | RIKEN cDNA 1810043G02 gene
chr1-235 | chr1 | 184709240 | 184709442 | + | 10.2 | 0.824 | intron (NM_144796, intron 1 of 7) | intron (NM_144796, intron 1 of 7) | 14304 | NM_144796 | 96935 | Mm.331052 | NM_144796 | ENSMUSG00000038576 | Susd4 | AI848994|E430021N18Rik|MGC30368|N28096 | sushi domain containing 4
chr1-229 | chr1 | 180395928 | 180396130 | + | 10.2 | 0.812 | [NAME] (NM_026626, intron 3 of 6) | [NAME] (NM_026626, intron 3 of 6) | 60017 | NM_026626 | 68226 | Mm.252132 | NM_026626 | ENSMUSG00000026495 | Efcab2 | 1700073K01Rik|D830011E08Rik | EF-hand calcium binding domain 2
chr17-170 | chr17 | 27780691 | 27780893 | + | 10.2 | 0.812 | Intergenic | B1F|SINE|Alu | -8605 | NM_025963 | 67097 | Mm.383217 | NM_025963 | ENSMUSG00000052146 | Rps10 | 2210402A09Rik|MGC107635 | ribosomal protein S10
chr7-178 | chr7 | 116753545 | 116753747 | + | 10.2 | 0.588 | [NAME] (NM_001001326, intron 1 of 19) | [NAME] (NM_001001326, intron 1 of 19) | 6436 | NR_037617 | 76954 | Mm.252009 | NM_001001326 | ENSMUSG00000031024 | St5 | 2010004M01Rik|2610305K15Rik | suppression of tumorigenicity 5
chr14-111 | chr14 | 22806070 | 22806272 | + | 10.2 | 0.7 | intron (NM_145459, intron 2 of 2) | CpG | 2652 | NM_145459 | 218820 | Mm.292401 | NM_145459 | ENSMUSG00000039081 | [NAME] | [NAME] | zinc finger protein 503
chr6-407 | chr6 | 134724930 | 134725132 | + | 10.2 | 0.765 | intron (NM_130447, intron 1 of 6) | intron (NM_130447, intron 1 of 6) | 17615 | NM_130447 | 70686 | Mm.3994 | NM_181320 | ENSMUSG00000030203 | Dusp16 | 3830417M17Rik|AW558566|D6Ertd213e|MKP-7|MKP7|Mkpm | dual specificity phosphatase 16
chr14-134 | chr14 | 79633620 | 79633822 | + | 10.2 | 0.611 | [NAME] (NM_001033215, intron 1 of 2) | [NAME] (NM_001033215, intron 1 of 2) | 13453 | NM_001033215 | 105590 | Mm.486536 | NM_001033215 | ENSMUSG00000071262 | Zfp957 | AU017455 | zinc finger protein 957
chr9-157 | chr9 | 107996973 | 107997175 | + | 10.2 | 0.842 | promoter-TSS (NM_146226) | promoter-TSS (NM_146226) | -263 | NM_146226 | 235606 | Mm.219639 | NM_146226 | ENSMUSG00000032590 | [NAME] | MGC38101 | acylpeptide hydrolase
chr15-110 | chr15 | 95876435 | 95876637 | + | 10.2 | 0.778 | Intergenic | Intergenic | 33447 | NR_003627 | 402773 | Mm.210567 | NR_003627 |  | D030018L15Rik | - | nuclear receptor coactivator 2 pseudogene
chr11-280 | chr11 | 62063057 | 62063259 | + | 10.2 | 0.647 | intron (NM_007413, intron 1 of 1) | intron (NM_007413, intron 1 of 1) | 672 | NM_007413 | 11541 | Mm.40740 | NM_007413 | ENSMUSG00000018500 | Adora2b | A2BAR|A2BR|A2b|AA2BR|AI480866|AI605384|MGC144574|MGC144575 | adenosine A2b receptor
[NAME] | chr14 | 100151161 | 100151363 | + | 10.2 | 0.778 | Intergenic | L1_Mus4|LINE|L1 | 397753 | NM_010636 | 16597 | Mm.458816 | NM_010636 | ENSMUSG00000072294 | Klf12 | 2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik | Kruppel-like factor 12
chr17-212 | chr17 | 34117541 | 34117743 | + | 10.2 | 0.778 | promoter-TSS (NR_033305) | promoter-TSS (NR_033305) | -795 | NR_033305 | 433100 | Mm.380381 | NM_001013793 |  | AA388235 | - | expressed sequence AA388235
chr5-135 | chr5 | 107465774 | 107465976 | + | 10.2 | 0.875 | Intergenic | Lx8|LINE|L1 | 72534 | NM_009863 | 12545 | Mm.20842 | NM_009863 | ENSMUSG00000029283 | Cdc7 | AI597260|Cdc7l1|MGC91067|muCdc7 | cell division cycle 7 (S. cerevisiae)
chr10-103 | chr10 | 60862131 | 60862333 | + | 10.2 | 0.824 | Intergenic | Intergenic | -15961 | NM_013753 | 27355 | Mm.269699 | NM_013753 | ENSMUSG00000020092 | X99384 | MGC169319|MMPAL|Pald|mKIAA1274 | cDNA sequence X99384
chr1-238 | chr1 | 191093862 | 191094064 | + | 10.2 | 0.684 | [NAME] intron 3 of 6) | [NAME] intron 3 of 6) | 73269 | NM_001159850 | 16526 | Mm.33304 | NM_001159850 | ENSMUSG00000037624 | Kcnk2 | A430027H14Rik|AI848635|TREK-1 | potassium channel, subfamily K, member 2
chr15-103 | chr15 | 85414169 | 85414371 | + | 10.2 | 0.684 | non-coding (NR_040433, exon 2 of 5) | non-coding (NR_040433, exon 2 of 5) | -2019 | NM_009528 | 22422 | Mm.306946 | NM_001163633 | ENSMUSG00000022382 | Wnt7b | Wnt-7b | wingless-related MMTV integration site 7B
chr16-72 | chr16 | 11422865 | 11423067 | + | 10.2 | 0.833 | intron (NM_028964, intron 11 of 20) | intron (NM_028964, intron 11 of 20) | 99969 | NM_028964 | 74478 | Mm.325831 | [NAME] | ENSMUSG00000071669 | Snx29 | 4933437K13Rik|ENSMUSG00000079738|Gm11170|Gm1737|Gm930|Rundc2a | sorting nexin 29
chr12-738 | chr12 | 101010068 | 101010270 | + | 10.2 | 0.684 | [NAME] (NM_030172, intron 5 of 5) | [NAME] (NM_030172, intron 5 of 5) | 111483 | NM_030172 | 78767 | Mm.235920 | NM_030172 | ENSMUSG00000021176 | 2610021K21Rik | 2610110A13Rik|Efcab11 | RIKEN cDNA 2610021K21 gene
chr9-141 | chr9 | 63969397 | 63969599 | + | 10.2 | 0.812 | intron (NM_145835, intron 5 of 13) | ID_B1|SINE|B4 | 4544 | NM_145835 | 235435 | Mm.436581 | NM_145835 | ENSMUSG00000032401 | Lctl | E130104I05Rik|KLPH | lactase-like
chr4-354 | chr4 | 129764547 | 129764749 | + | 10.2 | 0.667 | [NAME] (NM_028266, intron 55 of 69) | [NAME] (NM_028266, intron 55 of 69) | -20152 | NM_026441 | 67898 | Mm.20818 | NM_026441 | ENSMUSG00000028779 | Pef1 | 2600002E23Rik|Peflin | penta-EF hand domain containing 1
chr10-87 | chr10 | 20811247 | 20811449 | + | 10.2 | 0.824 | Intergenic | Intergenic | 50722 | NM_001177776 | 52906 | Mm.486431 | NM_001177776 | ENSMUSG00000019986 | Ahi1 | 1700015F03Rik|Ahi-1|D10Bwg0629e | [NAME] helper integration site 1
chr12-713 | chr12 | 92950709 | 92950911 | + | 10.2 | 0.833 | [NAME] (NM_175367, intron 4 of 6) | ORR1E|LTR|MaLR | 74066 | NM_175367 | 108800 | Mm.23125 | NM_175367 | ENSMUSG00000020961 | Ston2 | 4933401N24Rik|AI425999|AW544599 | stonin 2
chr3-106 | chr3 | 130023553 | 130023755 | + | 10.2 | 0.6 | [NAME] (NM_198711, intron 2 of 34) | MLT1F2|LTR|MaLR | 139891 | NM_001244952 | 77018 | Mm.91728 | NM_001244952 | ENSMUSG00000058897 | Col25a1 | 2700062B08Rik|CLAC-P | collagen, type XXV, alpha 1
chr2-75 | chr2 | 10783645 | 10783847 | + | 10.2 | 0.667 | Intergenic | Intergenic | -310263 | NM_008859 | 18761 | Mm.329993 | NM_008859 | ENSMUSG00000026778 | Prkcq | A130035A12Rik|AW494342|PKC-0|PKC-theta|PKCtheta|Pkcq | protein kinase C, theta
chr4-267 | chr4 | 106580495 | 106580697 | + | 10.2 | 0.636 | Intergenic | Intergenic | -3479 | NM_198438 | 72475 | Mm.474861 | NM_023672 | ENSMUSG00000061887 | Ssbp3 | 2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1 | single-stranded DNA binding protein 3
chr1-241 | chr1 | 193310786 | 193310988 | + | 10.2 | 0.611 | Intergenic | Intergenic | 88526 | NM_029766 | 76843 | Mm.189102 | NM_029766 | ENSMUSG00000037474 | [NAME] | 2810047L02Rik|5730564G15Rik|Ramp | denticleless homolog (Drosophila)
chr12-667 | chr12 | 82966093 | 82966295 | + | 10.2 | 0.8 | [NAME] (NM_018814, intron 1 of 35) | RLTR20D|LTR|ERVK | 5177 | NM_018814 | 54604 | [NAME] | NM_018814 | ENSMUSG00000021140 | Pcnx | 2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnxl1 | pecanex homolog (Drosophila)
chr11-282 | chr11 | 67594900 | 67595102 | + | 10.2 | 0.933 | Intergenic | Intergenic | -10346 | NM_175681 | 93896 | Mm.118883 | NM_175681 | ENSMUSG00000049928 | Glp2r | 9530092J08Rik|GLP-2 | glucagon-like peptide 2 receptor
chr19-125 | chr19 | 49657072 | 49657274 | + | 10.2 | 0.667 | Intergenic | Lx|LINE|L1 | 1095963 | NM_001252501 | 58178 | [NAME] | NM_001252501 | ENSMUSG00000043531 | Sorcs1 | Sorcs|mSorCS | [NAME] domain receptor protein SORCS 1
chr12-674 | chr12 | 87596034 | 87596236 | + | 10.2 | 0.75 | [NAME] (NM_027405, intron 2 of 9) | [NAME] (NM_027405, intron 2 of 9) | 13307 | NM_027405 | 70373 | Mm.252967 | NM_027405 | ENSMUSG00000021254 | 1700020O03Rik | 4732487G21Rik|A630090I05Rik|Kiaa1152 | RIKEN cDNA 1700020O03 gene
chr8-1010 | chr8 | 128723855 | 128724057 | + | 10.2 | 0.812 | Intergenic | ORR1E|LTR|MaLR | -98523 | NM_175434 | 210027 | Mm.459322 | NM_175434 | ENSMUSG00000057060 | Slc35f3 | B230375D17Rik|MGC141263|MGC141264 | solute carrier family 35, member F3
chr12-707 | chr12 | 91411790 | 91411992 | + | 10.2 | 0.765 | [NAME] (NM_172544, intron 16 of 19) | L1_Mus3|LINE|L1 | 360995 | NM_001252074 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr9-132 | chr9 | 58133112 | 58133314 | + | 10.2 | 0.647 | Intergenic | Intergenic | 27806 | NM_010729 | 16949 | Mm.250492 | NM_010729 | ENSMUSG00000032334 | Loxl1 | Loxl|MGC106801 | lysyl oxidase-like 1
[NAME] | chr11 | 88004947 | 88005149 | + | 10.2 | 0.706 | [NAME] 10 of 10) | [NAME] 10 of 10) | -12872 | NM_024174 | 64656 | Mm.168680 | NM_024174 | ENSMUSG00000023723 | Mrps23 | 2310047I09Rik|D11Bwg1153e|Rpms23 | mitochondrial ribosomal protein S23
chr16-103 | chr16 | 93883657 | 93883859 | + | 10.2 | 0.706 | promoter-TSS (NM_028083) | promoter-TSS (NM_028083) | -388 | NM_028083 | 110749 | Mm.274222 | NM_028083 | ENSMUSG00000022945 | Chaf1b | 2600017H24Rik|C76145|CAF-I p60|CAF-Ip60|CAF1|CAF1A|CAF1P60|MPHOSPH7 | chromatin assembly factor 1, subunit B (p60)
chr12-977 | chr12 | 112823523 | 112823725 | + | 10.2 | 0.812 | [NAME] (NM_021516, intron 1 of 16) | [NAME] (NM_021516, intron 1 of 16) | 10903 | NM_022801 | 17169 | Mm.420865 | NM_021516 | ENSMUSG00000007411 | [NAME] | 1600015G02Rik|A430080F22Rik|C-TAK1|ETK-1|ETK1|Emk2|KIAA4230|MPK10 | MAP/microtubule affinity-regulating kinase 3
chr4-233 | chr4 | 45690928 | 45691130 | + | 10.2 | 0.824 | Intergenic | Intergenic | -5432 | NM_001033412 | 329839 | Mm.331582 | NM_001033412 |  | Gm829 | - | predicted gene 829
chr17-181 | chr17 | 29330643 | 29330845 | + | 10.2 | 0.722 | [NAME] 8 of 20) | [NAME] 8 of 20) | 43991 | NM_153166 | 240058 | Mm.39905 | NM_153166 | ENSMUSG00000024008 | Cpne5 | A830083G22Rik|MGC47475 | copine V
chr11-265 | chr11 | 32424229 | 32424431 | + | 10.2 | 0.667 | [NAME], intron 2 of 3) | [NAME], intron 2 of 3) | 3244 | NM_027031 | 69306 | Mm.288704 | NM_027031 | ENSMUSG00000044056 | Efcab9 | 1700007I06Rik|4930403C08Rik|MGC107247 | EF-hand calcium binding domain 9
chr6-469 | chr6 | 147043065 | 147043267 | + | 10.2 | 0.824 | intron (NM_001081237, intron 1 of 2) | intron (NM_001081237, intron 1 of 2) | 3569 | NM_001081237 | 232539 | Mm.32497 | NM_001081237 | ENSMUSG00000040102 | Klhdc5 | A330079N23Rik|AI450355|C230080I20Rik|mKIAA1340 | kelch domain containing 5
chr6-460 | chr6 | 145578460 | 145578662 | + | 10.2 | 0.75 | Intergenic | Intergenic | 14078 | NM_009449 | 22147 | Mm.270295 | NM_009449 | ENSMUSG00000067338 | Tuba3b | [NAME] | tubulin, alpha 3B
chr6-448 | chr6 | 144491736 | 144491938 | + | 10.2 | 0.875 | Intergenic | Intergenic | -129551 | NR_040519 | 66760 | Mm.233631 | NR_040519 |  | 4933425H06Rik | - | RIKEN cDNA 4933425H06 gene
chr6-325 | chr6 | 120530182 | 120530384 | + | 10.2 | 0.857 | Intergenic | Intergenic | 25469 | NR_045733 | 73505 | [NAME] | NR_045733 |  | 1700072O05Rik | - | RIKEN cDNA 1700072O05 gene
chr1-178 | chr1 | 42286685 | 42286887 | + | 10.2 | 0.6 | Intergenic | Intergenic | 464884 | NR_027826 | 66297 | Mm.45203 | NM_183252 |  | 2610017I09Rik | - | RIKEN cDNA 2610017I09 gene
chr18-69 | chr18 | 46757975 | 46758177 | + | 10.2 | 0.65 | promoter-TSS (NM_025698) | promoter-TSS (NM_025698) | 718 | NM_010120 | 13664 | Mm.423010 | NM_010120 | ENSMUSG00000057561 | Eif1a | C76390|Ef1a|Eftu|Eif4c|eIF-1A | eukaryotic translation initiation factor 1A
chr17-222 | chr17 | 45748030 | 45748232 | + | 10.2 | 0.737 | Intergenic | Intergenic | -9080 | NM_001177469 | 653016 | Mm.45676 | NM_001177468 | ENSMUSG00000079471 | Gm7325 | EG653016|Esgp | predicted gene 7325
chr15-79 | chr15 | 75948370 | 75948572 | + | 10.2 | 0.684 | intron (NM_144848, intron 1 of 1) | intron (NM_144848, intron 1 of 1) | 2154 | NM_144848 | 223650 | Mm.259929 | NM_144848 |  | [NAME] | 6230424I18Rik|EPIPL|EPIPL1|EPPK | epiplakin 1
chr8-1000 | chr8 | 127579662 | 127579864 | + | 10.2 | 0.684 | [NAME] (NM_174854, intron 1 of 12) | [NAME] (NM_174854, intron 1 of 12) | 1668 | NM_174854 | 244667 | [NAME] | NM_170596 | ENSMUSG00000043051 | Disc1 | - | disrupted in schizophrenia 1
chr19-118 | chr19 | 45821919 | 45822121 | + | 10.2 | 0.75 | TTS (NM_008723) | TTS (NM_008723) | 2033 | NM_008723 | 18150 | Mm.1406 | NM_008723 | ENSMUSG00000056209 | Npm3 | Nub1 | nucleoplasmin 3
chr7-203 | chr7 | 150246813 | 150247015 | + | 10.2 | 0.765 | intron (NM_133655, intron 1 of 7) | intron (NM_133655, intron 1 of 7) | -7641 | NR_015529 | 97423 | Mm.5250 | NR_015529 |  | [NAME] | - | expressed sequence R74862
chr6-461 | chr6 | 145709258 | 145709460 | + | 10.2 | 0.75 | Intergenic | Intergenic | -47544 | NM_027760 | 71323 | Mm.444985 | NM_027760 | ENSMUSG00000030259 | Rassf8 | 5133400D11Rik|AA815821|AW123240|Hoj1|MGC144731|MGC144732|mHoj-1 | [NAME] association (RalGDS/AF-6) domain family (N-terminal) member 8
chr6-414 | chr6 | 135780811 | 135781013 | + | 10.2 | 0.875 | intron (NM_008171, intron 6 of 14) | intron (NM_008171, intron 6 of 14) | 342617 | NM_008171 | 14812 | Mm.436649 | NM_008171 | ENSMUSG00000030209 | Grin2b | AW490526|NR2B|Nmdar2b | glutamate receptor, ionotropic, NMDA2B (epsilon 2)
chr15-71 | chr15 | 66101929 | 66102131 | + | 10.2 | 0.824 | [NAME] (NM_152923, intron 1 of 14) | [NAME] (NM_152923, intron 1 of 14) | 15756 | NM_152923 | 110862 | Mm.255585 | NM_152923 | ENSMUSG00000056258 | Kcnq3 | - | potassium voltage-gated channel, subfamily Q, member 3
chr19-93 | chr19 | 10651493 | 10651695 | + | 10.2 | 0.684 | promoter-TSS (NM_028411) | promoter-TSS (NM_028411) | -7 | NM_028411 | 72982 | Mm.391194 | NM_028411 | ENSMUSG00000024666 | [NAME] | 1700113I01Rik|2900055D14Rik|MGC129472 | [NAME] 138
chr16-74 | chr16 | 11790874 | 11791076 | + | 10.2 | 0.824 | Intergenic | RMER15|LTR|ERVL | -110482 | NR_033509 | 791359 | Mm.227592 | NR_033509 |  | Gm9961 | ENSMUSG00000055015 | predicted gene 9961
chr6-301 | chr6 | 117086007 | 117086209 | + | 10.2 | 0.882 | Intergenic | Intergenic | -32445 | NM_001012477 | 20315 | Mm.303231 | NM_001012477 | ENSMUSG00000061353 | Cxcl12 | AI174028|Pbsf|Scyb12|Sdf1|Sdf1a|Sdf1b|Tlsf|Tlsfa|Tlsfb|Tpar1 | chemokine (C-X-C motif) ligand 12
chr19-70 | chr19 | 4000142 | 4000344 | + | 10.2 | 0.696 | promoter-TSS (NM_025529) | promoter-TSS (NM_025529) | -337 | NM_025529 | 66387 | Mm.259222 | NM_025529 | ENSMUSG00000024869 | Nudt8 | 2310039H17Rik | nudix (nucleoside diphosphate linked moiety X)-type motif 8
chr15-116 | chr15 | 98822958 | 98823160 | + | 10.2 | 0.733 | Intergenic | Intergenic | 6663 | NR_045991 | 75951 | Mm.441657 | NR_045991 |  | 4930578M01Rik | 3010001K12Rik | RIKEN cDNA 4930578M01 gene
chr4-298 | chr4 | 115493397 | 115493599 | + | 10.2 | 0.824 | Intergenic | Intergenic | -7199 | NM_175308 | 100465 | Mm.35571 | NM_175308 | ENSMUSG00000028709 | Mob3c | AW822253|D130076I06Rik|Mobkl2c | MOB kinase activator 3C
chr5-159 | chr5 | 130364292 | 130364494 | + | 10.2 | 0.722 | Intergenic | Intergenic | -1053 | NM_024166 | 14004 | Mm.299062 | NM_024166 | ENSMUSG00000070493 | Chchd2 | AL033347|Etohi6|MGC103085 | coiled-coil-helix-coiled-coil-helix domain containing 2
chr12-702 | chr12 | 89856722 | 89856924 | + | 10.2 | 0.933 | Intergenic | L1VL2|LINE|L1 | -104497 | NM_001198587 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr9-142 | chr9 | 65513211 | 65513413 | + | 10.2 | 0.714 | Intergenic | Intergenic | -11043 | NM_010952 | 18247 | Mm.473237 | NM_010952 |  | Oaz2 | AZ-2|AZ2|Oaz2-ps|Sez15 | ornithine decarboxylase antizyme 2
chr8-658 | chr8 | 13104354 | 13104556 | + | 10.2 | 0.667 | [NAME] (NM_178708, intron 1 of 13) | [NAME] (NM_178708, intron 1 of 13) | 888 | NM_178708 | 234069 | Mm.103427 | NM_178708 | ENSMUSG00000038542 | Pcid2 | A730042J05Rik | PCI domain containing 2
chr1-237 | chr1 | 190956687 | 190956889 | + | 10.2 | 0.8 | Intergenic | B4A|SINE|B4 | -125069 | NM_172650 | 226823 | Mm.209880 | NM_172650 | ENSMUSG00000026608 | Kctd3 | 4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45 | potassium channel tetramerisation domain containing 3
chr10-86 | chr10 | 6338592 | 6338794 | + | 10.2 | 0.824 | exon (NM_001170786, exon 8 of 28) | exon (NM_001170786, exon 8 of 28) | 34773 | NM_001170786 | 270685 | [NAME] | NM_001170785 | [NAME] | Mthfd1l | 2410004L15Rik|AI647056|Fthfsdc1 | methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like
chr16-66 | chr16 | 4075037 | 4075239 | + | 10.2 | 0.579 | intron (NM_026508, intron 1 of 17) | intron (NM_026508, intron 1 of 17) | 2672 | NM_026508 | 68015 | Mm.123366 | NM_026508 | ENSMUSG00000005981 | Trap1 | 2410002K23Rik|HSP75 | TNF receptor-associated protein 1
chr10-96 | chr10 | 57696205 | 57696407 | + | 10.2 | 0.933 | promoter-TSS (NM_001081954) | promoter-TSS (NM_001081954) | -883 | NM_001081954 | 664783 | Mm.482575 | NM_001081954 |  | Dux | AW822073|Dux4|Duxbl|EG664783 | double homeobox
chr13-97 | chr13 | 54789405 | 54789607 | + | 10.2 | 0.765 | promoter-TSS (NM_134064) | promoter-TSS (NM_134064) | 55 | NM_001146027 | 105239 | Mm.25366 | NM_001146025 | ENSMUSG00000034928 | Rnf44 | AI854545|mKIAA1100 | ring finger protein 44
chr18-65 | chr18 | 37675555 | 37675757 | + | 10.2 | 0.8 | exon (NM_053146, exon 1 of 1) | exon (NM_053146, exon 1 of 1) | 2350 | NM_053146 | 93892 | Mm.348053 | NM_053146 | ENSMUSG00000044022 | Pcdhb21 | Pcdhb18|PcdhbU | protocadherin beta 21
chr11-324 | chr11 | 96805796 | 96805998 | + | 10.2 | 0.714 | promoter-TSS (NM_134021) | promoter-TSS (NM_134021) | 437 | NR_003293 | 319371 | Mm.436865 | NR_003293 |  | D030028A08Rik | - | RIKEN cDNA D030028A08 gene
chr12-700 | chr12 | 89724478 | 89724680 | + | 10.2 | 0.722 | Intergenic | Intergenic | -108812 | NR_045888 | 71818 |  | NR_045888 |  | 3200001D21Rik | - | RIKEN cDNA 3200001D21 gene
chr11-254 | chr11 | 3662631 | 3662833 | + | 10.2 | 0.75 | [NAME] (NM_152818, intron 2 of 13) | L2|LINE|L2 | 101174 | NM_152818 | 74309 | Mm.61022 | NM_152818 | ENSMUSG00000020435 | Osbp2 | 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 | oxysterol binding protein 2
chr6-450 | chr6 | 144825904 | 144826106 | + | 10.2 | 0.667 | Intergenic | Intergenic | 171327 | NM_001024468 | 12035 | Mm.4606 | NM_001024468 | ENSMUSG00000030268 | [NAME] | BCATc|Eca39 | branched chain aminotransferase 1, cytosolic
chr6-382 | chr6 | 127145720 | 127145922 | + | 10.2 | 0.65 | intron (NR_040273, intron 2 of 2) | LTR85c|LTR|Gypsy? | -44755 | NM_009829 | 12444 | Mm.333406 | NM_009829 | [NAME] | Ccnd2 | 2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2 | cyclin D2
chr11-339 | chr11 | 100155712 | 100155914 | + | 10.2 | 0.824 | Intergenic | B3|SINE|B2 | -24628 | NM_212483 | 68239 | Mm.158190 | NM_212483 | ENSMUSG00000053654 | Krt42 | 2410039E07Rik|K17n|Ka22|ecat6 | keratin 42
chr11-258 | chr11 | 5460879 | 5461081 | + | 10.2 | 0.688 | Intergenic | Intergenic | -8707 | NM_023816 | 76389 | Mm.67300 | NM_023816 | ENSMUSG00000020481 | Ankrd36 | 1700008J08Rik|1700012M14Rik|Ankrd48 | ankyrin repeat domain 36
chr4-242 | chr4 | 94719589 | 94719791 | + | 10.2 | 0.789 | promoter-TSS (NM_010591) | promoter-TSS (NM_010591) | -777 | NM_010591 | 16476 | Mm.275071 | NM_010591 | ENSMUSG00000052684 | Jun | AP-1|Junc|c-jun | Jun oncogene
chr16-95 | chr16 | 65807814 | 65808016 | + | 10.2 | 0.824 | Intergenic | RLTR26|LTR|ERVK | -7963 | NM_028572 | 73569 | Mm.482366 | NM_028572 | ENSMUSG00000091243 | Vgll3 | 1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2 | vestigial like 3 (Drosophila)
chr8-868 | chr8 | 112068269 | 112068471 | + | 10.2 | 0.75 | Intergenic | B4|SINE|B4 | 21131 | NM_178380 | 64340 | Mm.23705 | NM_178380 | ENSMUSG00000037993 | Dhx38 | 5730550P09Rik|AI325984|AW540902|Ddx38|Prp16|mKIAA0224 | DEAH (Asp-Glu-Ala-His) box polypeptide 38
chr8-903 | chr8 | 120639975 | 120640177 | + | 10.2 | 0.938 | Intergenic | ORR1D1|LTR|MaLR | -167579 | NM_019707 | 12554 | Mm.334841 | NM_019707 | ENSMUSG00000031841 | Cdh13 | 4932416G01Rik|Cdht|T-cadherin|Tcad | cadherin 13
chr8-814 | chr8 | 95705533 | 95705735 | + | 10.2 | 0.941 | [NAME] (NM_053200, intron 7 of 13) | [NAME] (NM_053200, intron 7 of 13) | 16069 | NM_053200 | 104158 | Mm.292803 | NM_053200 | ENSMUSG00000056973 | Ces1d | Ces3|TGH | carboxylesterase 1D
chr8-799 | chr8 | 91552408 | 91552610 | + | 10.2 | 0.667 | exon (NM_021390, exon 4 of 4) | exon (NM_021390, exon 4 of 4) | 15552 | NM_021390 | 58198 | Mm.214361 | NM_021390 | ENSMUSG00000031665 | Sall1 | Msal-3 | sal-like 1 (Drosophila)
chr16-64 | chr16 | 3273472 | 3273674 | + | 10.2 | 0.632 | Intergenic | Lx2|LINE|L1 | -318825 | NM_146860 | 258859 | Mm.377723 | NM_146860 | ENSMUSG00000051003 | Olfr161 | MOR131-1|OR912-47M6 | olfactory receptor 161
chr1-211 | chr1 | 132612750 | 132612952 | + | 10.2 | 0.75 | promoter-TSS (NR_027859) | promoter-TSS (NR_027859) | -453 | NM_008825 | 18640 | Mm.249861 | NM_001162415 | ENSMUSG00000026409 | Pfkfb2 | 4930568D07Rik | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2
chr4-264 | chr4 | 106426332 | 106426534 | + | 10.2 | 0.778 | [NAME] (NM_025590, intron 11 of 15) | [NAME] (NM_025590, intron 11 of 15) | 19913 | NM_146149 | 230579 | Mm.476048 | NM_146149 | ENSMUSG00000034871 | Fam151a | 2010309H15Rik|MGC37700 | family with sequence simliarity 151, member A
chr6-424 | chr6 | 137379518 | 137379720 | + | 10.2 | 0.579 | [NAME] intron 18 of 25) | [NAME] intron 18 of 25) | 20377 | NM_001164403 | 19277 | Mm.446785 | [NAME] | ENSMUSG00000030223 | Ptpro | D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O | protein tyrosine phosphatase, receptor type, O
chr8-775 | chr8 | 88808183 | 88808385 | + | 10.2 | 0.875 | Intergenic | Lx|LINE|L1 | 282205 | NM_172912 | 244562 | Mm.67485 | NM_172912 | ENSMUSG00000036872 | Abcc12 | 4930467B22Rik|MRP9 | ATP-binding cassette, sub-family C (CFTR/MRP), member 12
chr12-858 | chr12 | 107806847 | 107807049 | + | 10.2 | 0.722 | Intergenic | Intergenic | -121072 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr12-727 | chr12 | 99635416 | 99635618 | + | 10.2 | 0.737 | Intergenic | Intergenic | 128650 | NM_008152 | 14744 | Mm.378924 | NM_008152 | ENSMUSG00000021886 | Gpr65 | [NAME] | G-protein coupled receptor 65
chr12-658 | chr12 | 31965689 | 31965891 | + | 10.2 | 0.765 | intron (NM_008482, intron 6 of 32) | intron (NM_008482, intron 6 of 32) | 15631 | NM_008482 | 16777 | Mm.172674 | NM_008482 | ENSMUSG00000002900 | Lamb1 | C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1 | laminin B1
chr12-740 | chr12 | 101125293 | 101125495 | + | 10.2 | 0.875 | intron (NM_028354, intron 1 of 15) | U6|snRNA|snRNA | 2669 | NM_028354 | 104884 | Mm.488658 | NM_028354 | ENSMUSG00000021177 | Tdp1 | 2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1 | tyrosyl-DNA phosphodiesterase 1
chr14-161 | chr14 | 100109545 | 100109747 | + | 10.2 | 0.824 | Intergenic | Intergenic | 411736 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr11-311 | chr11 | 81825014 | 81825216 | + | 10.2 | 0.933 | Intergenic | Lx8|LINE|L1 | -23964 | NM_011333 | 20296 | [NAME] | NM_011333 | ENSMUSG00000035385 | Ccl2 | AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje | chemokine (C-C motif) ligand 2
chr8-934 | chr8 | 123218304 | 123218506 | + | 10.2 | 0.714 | Intergenic | Intergenic | 26215 | [NAME] | 12857 | Mm.386758 | [NAME] | ENSMUSG00000031818 | Cox4i1 | AL024441|COXIV|Cox4|Cox4a | cytochrome c oxidase subunit IV isoform 1
chr11-354 | chr11 | 108955801 | 108956003 | + | 10.2 | 0.75 | Intergenic | Intergenic | 49781 | NR_037978 | 268498 | Mm.227970 | NM_001085512 | ENSMUSG00000078605 | E030025P04Rik | Gm664 | RIKEN cDNA E030025P04 gene
chr8-751 | chr8 | 86134410 | 86134612 | + | 10.2 | 0.733 | exon (NM_018808, exon 3 of 3) | exon (NM_018808, exon 3 of 3) | 2437 | NM_018808 | 81489 | Mm.282092 | NM_018808 | ENSMUSG00000005483 | Dnajb1 | 0610007I11Rik|HSPF1|Hsp40 | DnaJ (Hsp40) homolog, subfamily B, member 1
chr8-842 | chr8 | 107618328 | 107618530 | + | 10.2 | 0.812 | TTS (NM_144511) | TTS (NM_144511) | 10774 | NM_001159415 | 13909 | Mm.482444 | NM_001159415 | ENSMUSG00000062181 | Ces3b | Ces31L|Ces3L|EG13909|ES31L|Es31|Gm4738 | carboxylesterase 3B
chr17-242 | chr17 | 84536391 | 84536593 | + | 10.2 | 0.684 | Intergenic | Intergenic | 50795 | NM_001001806 | 12193 | Mm.259321 | NM_001001806 | ENSMUSG00000045817 | Zfp36l2 | Brf2|ERF2|Tis11d | zinc finger protein 36, C3H type-like 2
chr4-245 | chr4 | 95416813 | 95417015 | + | 10.2 | 0.65 | [NAME] (NM_001113412, intron 7 of 15) | [NAME] (NM_001113412, intron 7 of 15) | 170802 | NM_029347 | 75578 | Mm.276098 | NM_001113412 | ENSMUSG00000028573 | Fggy | 2310009E04Rik|MGC118640 | FGGY carbohydrate kinase domain containing
chr7-156 | chr7 | 52230089 | 52230291 | + | 10.2 | 0.722 | promoter-TSS (NM_153679) | promoter-TSS (NM_153679) | 31 | NM_153679 | 78070 | Mm.231465 | NM_001252470 | ENSMUSG00000007783 | Cpt1c | 6530437J22Rik|9630004I06Rik|MGC101932 | [NAME] 1c
chr15-127 | chr15 | 102583676 | 102583878 | + | 10.2 | 0.941 | Intergenic | Intergenic | -31168 | NM_026192 | 67488 | Mm.71682 | NM_026192 | ENSMUSG00000023055 | Calcoco1 | 1810009B06Rik|Cocoa|Gcap11|KIAA1536|mKIAA1536 | calcium binding and coiled coil domain 1
chr11-377 | chr11 | 117205537 | 117205739 | + | 10.2 | 0.933 | intron (NM_001113488, intron 1 of 9) | intron (NM_001113488, intron 1 of 9) | 12011 | NM_001113488 | 53860 | Mm.38450 | NM_001113486 | ENSMUSG00000059248 | 2013-09-09 00:00:00 | MSF1|Msf|PNUTL4|Sint1 | septin 9
chr11-288 | chr11 | 69393796 | 69393998 | + | 10.2 | 0.737 | promoter-TSS (NM_011640) | promoter-TSS (NM_011640) | 36 | NM_001127233 | 22059 | Mm.222 | NM_001127233 | ENSMUSG00000059552 | Trp53 | Tp53|bbl|bfy|bhy|p44|p53 | transformation related protein 53
chr5-175 | chr5 | 145727056 | 145727258 | + | 10.2 | 0.75 | promoter-TSS (NM_029438) | promoter-TSS (NM_029438) | -458 | NM_001038627 | 75788 | Mm.27735 | NM_001038627 | ENSMUSG00000038780 | Smurf1 | 4930431E10Rik|mKIAA1625 | SMAD specific E3 ubiquitin protein ligase 1
chr4-301 | chr4 | 115725220 | 115725422 | + | 10.2 | 0.789 | [NAME] (NM_028142, intron 1 of 5) | [NAME] (NM_028142, intron 1 of 5) | 1160 | NM_028142 | 72181 | [NAME] | NM_028142 | [NAME] | Nsun4 | 2310010O12Rik|2810405F18Rik|AI507900|Shtap | NOL1/NOP2/Sun domain family, member 4
chr10-125 | chr10 | 80401738 | 80401940 | + | 10.2 | 0.778 | Intergenic | Intergenic | 9003 | NM_008655 | 17873 | Mm.1360 | NM_008655 | ENSMUSG00000015312 | Gadd45b | AI323528|Myd118 | growth arrest and DNA-damage-inducible 45 beta
chr6-413 | chr6 | 135324517 | 135324719 | + | 10.2 | 0.722 | [NAME] (NM_010128, intron 1 of 4) | [NAME] (NM_010128, intron 1 of 4) | 11669 | NM_010128 | 13730 | Mm.182785 | NM_010128 | ENSMUSG00000030208 | Emp1 | I-8-09|TMP | epithelial membrane protein 1
chr7-180 | chr7 | 118692347 | 118692549 | + | 10.2 | 0.812 | intron (NM_173739, intron 5 of 10) | intron (NM_173739, intron 5 of 10) | 231043 | NM_173739 | 233733 | Mm.323322 | NM_173739 | ENSMUSG00000038296 | Galntl4 | 2900011G21Rik|BC024988|MGC32465 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase-like 4
chr17-172 | chr17 | 28243447 | 28243649 | + | 10.2 | 0.75 | Intergenic | Intergenic | -25964 | NM_001085555 | 21463 | Mm.29758 | NM_001085555 | ENSMUSG00000062859 | Tcp11 | D17Ken1|MGC107229|Tcp-11 | t-complex protein 11
chr16-77 | chr16 | 17131820 | 17132022 | + | 10.2 | 0.7 | [NAME] (NM_022324, intron 1 of 2) | CpG-5544 | 555 | NM_022324 | 64136 | Mm.30222 | NM_022324 | ENSMUSG00000022769 | Sdf2l1 | - | stromal cell-derived factor 2-like 1
chr17-180 | chr17 | 29296564 | 29296766 | + | 10.2 | 0.789 | [NAME] 20 of 20) | [NAME] 20 of 20) | 24664 | NM_001002786 | 442827 | Mm.440341 | NM_001002786 | ENSMUSG00000064147 | Rab44 | 9830134C10Rik | RAB44, member RAS oncogene family
chr15-61 | chr15 | 31684010 | 31684212 | + | 10.2 | 0.882 | Intergenic | Intergenic | 152240 | NM_026546 | 68073 | Mm.119185 | NM_026546 | ENSMUSG00000039065 | Fam173b | A930016P21Rik|AA987072 | family with sequence similarity 173, member B
chr12-665 | chr12 | 81861605 | 81861807 | + | 10.2 | 0.882 | promoter-TSS (NM_001008423) | promoter-TSS (NM_001008423) | -4 | NM_001008423 | 380768 | Mm.29367 | NM_001008423 | ENSMUSG00000062961 | Gm1568 | MGC91363 | predicted gene 1568
chr8-857 | chr8 | 109548500 | 109548702 | + | 10.2 | 0.867 | Intergenic | Intergenic | -6625 | NM_126165 | 116733 | Mm.236004 | NM_126165 | ENSMUSG00000031913 | Vps4a | 4930589C15Rik|AI325971|AW553189|MGC11698 | vacuolar protein sorting 4a (yeast)
chr5-155 | chr5 | 124150159 | 124150361 | + | 10.2 | 0.722 | 3' UTR (NM_027494, exon 14 of 14) | 3' UTR (NM_027494, exon 14 of 14) | -15960 | NM_019765 | 56430 | [NAME] | NM_019765 | ENSMUSG00000049550 | Clip1 | 1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|KIAA4046|Rsn|mKIAA4046|restin | CAP-GLY domain containing linker protein 1
chr2-128 | chr2 | 135024984 | 135025186 | + | 10.2 | 0.875 | [NAME], intron 2 of 5) | [NAME], intron 2 of 5) | 16267 | [NAME] | 78805 | Mm.78702 | [NAME] |  | 4930545L23Rik | - | RIKEN cDNA 4930545L23 gene
chr7-200 | chr7 | 148621721 | 148621923 | + | 10.2 | 0.75 | [NAME] (NM_026646, intron 1 of 9) | [NAME] (NM_026646, intron 1 of 9) | -1329 | NM_001177576 | 68267 | Mm.33729 | NM_001177576 | ENSMUSG00000019082 | Slc25a22 | 1300006L01Rik|AI060884|Gc1 | solute carrier family 25 (mitochondrial carrier, glutamate), member 22
chr2-89 | chr2 | 29917144 | 29917346 | + | 10.2 | 0.789 | promoter-TSS (NM_023871) | promoter-TSS (NM_023871) | -271 | NM_023871 | 56086 | Mm.335942 | NM_001204875 | [NAME] | Set | 2610030F17Rik|5730420M11Rik|AA407739|I-2PP2A|MGC118419|StF-IT-1|TAF-I | SET nuclear oncogene
[NAME] | chr14 | 37730284 | 37730486 | + | 10.2 | 0.789 | [NAME] (NM_027045, intron 5 of 10) | [NAME] (NM_027045, intron 5 of 10) | 18369 | NM_028407 | 72972 | [NAME] | NM_027045 | ENSMUSG00000058690 | Gcap14 | 1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b | granule cell antiserum positive 14
chr8-745 | chr8 | 83136655 | 83136857 | + | 10.2 | 0.765 | exon (NM_001167898, exon 1 of 8) | exon (NM_001167898, exon 1 of 8) | 1818 | NM_001167898 | 333315 | Mm.134296 | NM_001167898 | ENSMUSG00000042353 | Frem3 | Gm795|NV2 | Fras1 related extracellular matrix protein 3
chr5-170 | chr5 | 139807698 | 139807900 | + | 10.2 | 0.667 | Intergenic | Intergenic | -6381 | NM_172723 | 231821 | Mm.297819 | NM_172723 | ENSMUSG00000056413 | Adap1 | 4930431P11Rik|Centa1|GC1L|p42IP4 | ArfGAP with dual PH domains 1
chr10-117 | chr10 | 79381685 | 79381887 | + | 10.2 | 0.789 | intron (NM_053244, intron 1 of 4) | intron (NM_053244, intron 1 of 4) | 2070 | NM_053244 | 114229 | Mm.191035 | NM_053244 | ENSMUSG00000035773 | Kiss1r | Gpr54|KiSS-1 | KISS1 receptor
chr12-651 | chr12 | 4064483 | 4064685 | + | 10.2 | 0.867 | Intergenic | Intergenic | -17990 | NM_153082 | 217378 | Mm.271656 | NM_153082 | ENSMUSG00000020657 | Dnajc27 | AI639580|C330021A05Rik|Rabj|Rbj | DnaJ (Hsp40) homolog, subfamily C, member 27
chr19-95 | chr19 | 16949594 | 16949796 | + | 10.2 | 0.765 | Intergenic | Intergenic | -1375 | NM_008023 | 14240 | Mm.7971 | NM_008023 | ENSMUSG00000056829 | Foxb2 | Fkh4 | forkhead box B2
chr8-855 | chr8 | 109120769 | 109120971 | + | 10.2 | 0.882 | Intergenic | MTD|LTR|MaLR | -6398 | NM_009864 | 12550 | Mm.35605 | NM_009864 | ENSMUSG00000000303 | Cdh1 | AA960649|Ecad|L-CAM|MGC107495|UVO|Um | cadherin 1
chr2-147 | chr2 | 164705595 | 164705797 | + | 10.2 | 0.632 | [NAME] (NM_146129, intron 1 of 16) | [NAME] (NM_146129, intron 1 of 16) | 828 | [NAME] | 228866 | Mm.241134 | [NAME] | ENSMUSG00000039849 | Pcif1 | 2310022K11Rik|C20orf67|F730014I05Rik|MGC25976 | [NAME] inhibiting factor 1
chr2-134 | chr2 | 153617644 | 153617846 | + | 10.2 | 0.778 | intron (NR_036629, intron 5 of 7) | intron (NR_036629, intron 5 of 7) | 11130 | NR_036629 | 100504221 | Mm.246778 | [NAME] |  | Efcab8 | A630008I04|EG329541|MGC178411 | EF-hand calcium binding domain 8
chr9-149 | chr9 | 89727508 | 89727710 | + | 10.2 | 0.812 | intron (NR_040735, intron 2 of 5) | intron (NR_040735, intron 2 of 5) | 6252 | NR_040735 | 74700 | Mm.159306 | NR_040735 |  | 4930524O08Rik | - | RIKEN cDNA 4930524O08 gene
chr3-118 | chr3 | 132975443 | 132975645 | + | 10.2 | 0.812 | intron (NM_146141, intron 1 of 11) | intron (NM_146141, intron 1 of 11) | 2464 | NM_146141 | 74776 | [NAME] | NM_146141 | ENSMUSG00000028013 | Ppa2 | 1110013G13Rik|MGC6539|Sid6306 | pyrophosphatase (inorganic) 2
chr4-383 | chr4 | 148018268 | 148018470 | + | 10.2 | 0.684 | [NAME] (NM_001085505, intron 1 of 10) | [NAME] (NM_001085505, intron 1 of 10) | 943 | NM_001085505 | 230909 | Mm.332067 | NM_001085505 | ENSMUSG00000070577 | Gm572 | - | predicted gene 572
chr4-353 | chr4 | 129138379 | 129138581 | + | 10.2 | 0.722 | promoter-TSS (NM_133889) | promoter-TSS (NM_133889) | -443 | NM_133889 | 100383 | Mm.17918 | NM_133889 | ENSMUSG00000040859 | Bsdc1 | 1110063F24Rik|AW011758 | BSD domain containing 1
chr13-108 | chr13 | 95318519 | 95318721 | + | 10.2 | 0.684 | [NAME] (NM_009680, intron 26 of 26) | [NAME] (NM_009680, intron 26 of 26) | 189705 | NM_009680 | 11774 | Mm.21185 | NM_009680 | ENSMUSG00000021686 | Ap3b1 | AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2 | adaptor-related protein complex 3, beta 1 subunit
chr7-170 | chr7 | 87159797 | 87159999 | + | 10.2 | 0.706 | Intergenic | MT2B|LTR|ERVL | -9802 | NM_001145999 | 209225 | Mm.290925 | NM_001145999 | ENSMUSG00000048897 | Zfp710 | 5430400N05Rik|9830165K13|AI324798|Znf710 | zinc finger protein 710
chr6-340 | chr6 | 124702029 | 124702231 | + | 10.2 | 0.778 | [NAME] 1 of 9) | [NAME] 1 of 9) | 4375 | NM_007881 | 13498 | Mm.333380 | NM_007881 | ENSMUSG00000004263 | Atn1 | Atr1|Drpla|atrophin-1 | atrophin 1
chr11-342 | chr11 | 101456805 | 101457007 | + | 10.2 | 0.867 | Intergenic | Intergenic | 13350 | NM_144830 | 217203 | Mm.280559 | NM_144830 | ENSMUSG00000034947 | Tmem106a | 0610008L10Rik|AI043106|BC022145|MGC30290|MGC37887 | [NAME] 106A
chr10-152 | chr10 | 128357946 | 128358148 | + | 10.2 | 0.824 | intron (NM_015740, intron 2 of 3) | intron (NM_015740, intron 2 of 3) | -1694 | NM_134006 | 19682 | Mm.439856 | NM_134006 | ENSMUSG00000025350 | Rdh5 | 9-cis|AI987873|RDH4|cRDH | [NAME] dehydrogenase 5
chr19-127 | chr19 | 56650633 | 56650835 | + | 10.2 | 0.733 | exon (NM_025811, exon 5 of 11) | exon (NM_025811, exon 5 of 11) | 27983 | NM_025811 | 66866 | Mm.392509 | NM_025811 | ENSMUSG00000025078 | Nhlrc2 | 1200003G01Rik|AI835049|AV002846|AW496455 | NHL repeat containing 2
chr6-267 | chr6 | 90289764 | 90289966 | + | 10.2 | 0.824 | [NAME] (NM_144940, intron 6 of 19) | [NAME] (NM_144940, intron 6 of 19) | 6582 | NM_144940 | 243537 | Mm.335669 | NM_144940 | ENSMUSG00000034456 | [NAME] | AI265605|BC022133|MGC37818 | urocanase domain containing 1
chr19-77 | chr19 | 5472022 | 5472224 | + | 10.2 | 0.875 | Intergenic | Intergenic | -2567 | NM_021474 | 58859 | Mm.276367 | NM_001164352 | ENSMUSG00000024909 | Efemp2 | 0610011K11Rik|Fbln4|MBP1 | epidermal growth factor-containing fibulin-like extracellular matrix protein 2
chr5-166 | chr5 | 138018358 | 138018560 | + | 10.2 | 0.722 | intron (NM_015799, intron 8 of 19) | B3|SINE|B2 | 7380 | NM_015799 | 50765 | Mm.21757 | NM_015799 | ENSMUSG00000029716 | Tfr2 | Trfr2 | transferrin receptor 2
chr12-736 | chr12 | 100867398 | 100867600 | + | 10.2 | 0.778 | Intergenic | Intergenic | -1315 | NR_045288 | 73457 | Mm.383439 | NR_045288 |  | 1700064M15Rik | - | RIKEN cDNA 1700064M15 gene
[NAME] | chr14 | 27909523 | 27909725 | + | 10.2 | 0.812 | [NAME] (NM_134437, intron 11 of 12) | [NAME] (NM_134437, intron 11 of 12) | 57437 | NM_134437 | 171463 | Mm.206726 | NM_027265 | ENSMUSG00000040717 | Il17rd | 2810004A10Rik|AI428510|MGC118454|Sef|Sef-S | interleukin 17 receptor D
chr11-369 | chr11 | 116601442 | 116601644 | + | 10.2 | 0.933 | Intergenic | Intergenic | -11938 | NR_003364 | 193217 | Mm.100084 | NR_003364 |  | BC018473 | - | cDNA sequence BC018473
chr19-81 | chr19 | 6141328 | 6141530 | + | 10.2 | 0.65 | promoter-TSS (NM_019722) | promoter-TSS (NM_019722) | -292 | NM_019722 | 56327 | Mm.21071 | NM_019722 | ENSMUSG00000024944 | Arl2 | 2610009M23Rik|AI115441|AW553335 | ADP-ribosylation factor-like 2
chr19-120 | chr19 | 46423034 | 46423236 | + | 10.2 | 0.778 | non-coding (NR_040418, exon 1 of 1) | non-coding (NR_040418, exon 1 of 1) | 343 | NR_040418 | 75579 | Mm.436708 | NR_040418 |  | 2310034G01Rik | - | RIKEN cDNA 2310034G01 gene
chr6-296 | chr6 | 115844364 | 115844566 | + | 10.2 | 0.789 | [NAME] (NM_001167763, intron 14 of 28) | [NAME] (NM_001167763, intron 14 of 28) | -37480 | NM_145383 | 212541 | Mm.406156 | NM_145383 | ENSMUSG00000030324 | Rho | MGC21585|MGC25387|Noerg1|Opn2|Ops|RP4 | rhodopsin
chr3-66 | chr3 | 54960039 | 54960241 | + | 10.2 | 0.875 | intron (NM_177203, intron 4 of 7) | intron (NM_177203, intron 4 of 7) | 16180 | NM_177203 | 320604 | Mm.213909 | NM_177203 | ENSMUSG00000048655 | A730037C10Rik | - | RIKEN cDNA A730037C10 gene
chr8-948 | chr8 | 123914813 | 123915015 | + | 10.2 | 0.7 | Intergenic | Intergenic | 150940 | NM_029597 | 76405 | Mm.165697 | NM_029597 | ENSMUSG00000031809 | 1700018B08Rik | 1700084O22Rik | RIKEN cDNA 1700018B08 gene
chr6-442 | chr6 | 143516909 | 143517111 | + | 10.2 | 0.722 | Intergenic | Intergenic | 82798 | NR_045732 | 73425 | Mm.417844 | NR_045732 |  | 1700060C16Rik | - | RIKEN cDNA 1700060C16 gene
chr2-113 | chr2 | 92265137 | 92265339 | + | 10.2 | 0.65 | [NAME] (NM_001113333, intron 2 of 10) | [NAME] (NM_001113333, intron 2 of 10) | 8988 | NM_009963 | 12953 | Mm.254181 | NM_001113333 | ENSMUSG00000068742 | Cry2 | AV006279|D130054K12Rik | cryptochrome 2 (photolyase-like)
chr7-165 | chr7 | 72817583 | 72817785 | + | 10.2 | 0.765 | intron (NM_172310, intron 10 of 18) | intron (NM_172310, intron 10 of 18) | -20619 | NM_178056 | 68634 | Mm.476828 | NM_026795 | ENSMUSG00000078681 | Tm2d3 | 1110025I09Rik|5930422O05Rik|Blp2 | TM2 domain containing 3
chr17-156 | chr17 | 26056977 | 26057179 | + | 10.2 | 0.65 | promoter-TSS (NM_139154) | promoter-TSS (NM_139154) | -419 | NM_139154 | 224624 | Mm.328872 | NM_139154 | ENSMUSG00000025730 | [NAME] | RAR3 | Rab40c, member RAS oncogene family
chr17-174 | chr17 | 28660504 | 28660706 | + | 10.2 | 0.75 | Intergenic | Intergenic | -7201 | NM_026290 | 67645 | Mm.46170 | NM_026290 | ENSMUSG00000024223 | 4930511I11Rik | AV041658|Armc12 | RIKEN cDNA 4930511I11 gene
chr10-135 | chr10 | 85915511 | 85915713 | + | 10.2 | 0.7 | [NAME] (NM_001164495, intron 2 of 6) | [NAME] (NM_001164495, intron 2 of 6) | 46029 | NM_001164495 | 27204 | Mm.444790 | NM_001164495 | ENSMUSG00000059602 | Syn3 | MGC130403 | synapsin III
chr8-681 | chr8 | 17836404 | 17836606 | + | 10.2 | 0.632 | Intergenic | Intergenic | -301120 | NM_053171 | 94109 | Mm.436988 | NM_053171 | ENSMUSG00000060924 | Csmd1 | B930082H09|KIAA1890|mKIAA1890 | CUB and Sushi multiple domains 1
chr8-822 | chr8 | 97373093 | 97373295 | + | 10.2 | 0.875 | [NAME] (NM_026452, intron 3 of 8) | [NAME] (NM_026452, intron 3 of 8) | -8156 | NM_009090 | 20021 | Mm.339593 | NM_009090 | ENSMUSG00000031783 | Polr2c | 33kDa|MGC118242|RPB3|Rpo2-3|mRBP31 | polymerase (RNA) II (DNA directed) polypeptide C
chr13-82 | chr13 | 22066064 | 22066266 | + | 10.2 | 0.55 | Intergenic | Intergenic | -6885 | NM_001162928 | 195236 | Mm.204664 | NM_001162928 | ENSMUSG00000016982 | Pom121l2 | Gm24 | POM121 membrane glycoprotein-like 2 (rat)
chr6-371 | chr6 | 125452550 | 125452752 | + | 10.2 | 0.632 | Intergenic | Intergenic | -7878 | NM_007657 | 12527 | Mm.404614 | NM_007657 | ENSMUSG00000030342 | Cd9 | Tspan29 | CD9 antigen
chr2-91 | chr2 | 30634686 | 30634888 | + | 10.2 | 0.65 | Intergenic | Intergenic | 22470 | NM_198000 | 73598 | Mm.34166 | NM_198000 | ENSMUSG00000044320 | 1700001O22Rik | 1700113K14Rik|4930549G18Rik | RIKEN cDNA 1700001O22 gene
chr4-380 | chr4 | 147524502 | 147524704 | + | 10.2 | 0.684 | [NAME] (NM_001163707, intron 1 of 5) | [NAME] (NM_001163707, intron 1 of 5) | 1431 | NM_001163705 | 50762 | Mm.27445 | NM_001163704 | ENSMUSG00000055401 | Fbxo6 | AA408845|FBG2|Fbs2|Fbx6b|Fbxo6b | F-box protein 6
chr15-96 | chr15 | 81755142 | 81755344 | + | 10.2 | 0.824 | intron (NM_030229, intron 1 of 5) | intron (NM_030229, intron 1 of 5) | 1400 | NM_030229 | 78929 | Mm.215115 | NM_030229 | ENSMUSG00000022476 | Polr3h | 5031409G22Rik|RPC8 | polymerase (RNA) III (DNA directed) polypeptide H
chr4-288 | chr4 | 109901654 | 109901856 | + | 10.2 | 0.882 | intron (NM_001038698, intron 2 of 6) | intron (NM_001038698, intron 2 of 6) | 57684 | NM_010488 | 15572 | Mm.3970 | NM_001038698 | ENSMUSG00000028546 | Elavl4 | Elav|Hud|PNEM | ELAV ([NAME], abnormal vision, [NAME] D)
chr1-230 | chr1 | 181734126 | 181734328 | + | 10.2 | 0.667 | promoter-TSS (NM_026375) | promoter-TSS (NM_026375) | -81 | NM_026375 | 226747 | Mm.128165 | NM_026375 | ENSMUSG00000026491 | Ahctf1 | 6230412P20Rik|AV011447|Elys | AT hook containing transcription factor 1
chr18-59 | chr18 | 34783646 | 34783848 | + | 10.2 | 0.812 | promoter-TSS (NM_001166406) | promoter-TSS (NM_001166406) | -531 | NM_001166407 | 19348 | Mm.258846 | NM_001166406 | ENSMUSG00000003779 | Kif20a | AA415432|Rab6kifl | [NAME] member 20A
chr4-270 | chr4 | 106630016 | 106630218 | + | 10.2 | 0.778 | [NAME] (NM_198438, intron 4 of 16) | [NAME] (NM_198438, intron 4 of 16) | 46042 | NM_023672 | 72475 | Mm.474861 | NM_023672 | ENSMUSG00000061887 | Ssbp3 | 2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1 | single-stranded DNA binding protein 3
chr5-129 | chr5 | 96638507 | 96638709 | + | 10.2 | 0.647 | promoter-TSS (NM_053158) | promoter-TSS (NM_053158) | -526 | NM_001039084 | 94061 | Mm.295499 | NM_001039084 | ENSMUSG00000029486 | Mrpl1 | 2410002L03Rik|5830418D04Rik|AI462572 | mitochondrial ribosomal protein L1
chr4-279 | chr4 | 108000739 | 108000941 | + | 10.2 | 0.778 | promoter-TSS (NM_027250) | promoter-TSS (NM_027250) | 83 | NM_027250 | 69893 | Mm.28354 | NM_027250 | ENSMUSG00000048351 | 2010305A19Rik | AI451324|D4Ertd796e|Selrc1 | RIKEN cDNA 2010305A19 gene
chr1-172 | chr1 | 34496638 | 34496840 | + | 10.2 | 0.778 | promoter-TSS (NM_027159) | promoter-TSS (NM_027159) | 65 | NM_178601 | 27993 | Mm.289667 | NM_178601 | ENSMUSG00000026127 | Imp4 | AA409888|AV031295|D1Wsu40e | IMP4, U3 small nucleolar ribonucleoprotein, homolog (yeast)
chr5-134 | chr5 | 106886759 | 106886961 | + | 10.2 | 0.75 | exon (NM_001005477, exon 1 of 3) | exon (NM_001005477, exon 1 of 3) | 325 | NM_001005477 | 104382 | Mm.271593 | NM_001005477 | ENSMUSG00000034384 | Barhl2 | E130309B19Rik|MBH1|MGC90874 | BarH-like 2 (Drosophila)
chr8-989 | chr8 | 126704592 | 126704794 | + | 10.2 | 0.722 | Intergenic | Intergenic | -50601 | NM_139272 | 108148 | Mm.33808 | NM_139272 | ENSMUSG00000089704 | Galnt2 | AI480629 | UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 2
chr10-90 | chr10 | 34017122 | 34017324 | + | 10.2 | 0.722 | promoter-TSS (NM_030203) | promoter-TSS (NM_030203) | -4 | NM_030203 | 72480 | Mm.21485 | NM_030203 | ENSMUSG00000039485 | Tspyl4 | 2610102M01Rik|B230210I21Rik|D10Bwg0791e | TSPY-like 4
chr2-140 | chr2 | 157243873 | 157244075 | + | 10.2 | 0.7 | Intergenic | MTD|LTR|MaLR | -6055 | NM_009271 | 20779 | Mm.22845 | NM_001025395 | ENSMUSG00000027646 | Src | AW259666|pp60c-src | Rous sarcoma oncogene
chr8-690 | chr8 | 23443597 | 23443799 | + | 10.2 | 0.875 | exon (NM_199257, exon 15 of 28) | exon (NM_199257, exon 15 of 28) | 49785 | NM_199257 | 234129 | Mm.450553 | NM_181851 | ENSMUSG00000031481 | Tpte | MGC130293|Pten2 | [NAME] phosphatase with tensin homology
chr17-185 | chr17 | 29548528 | 29548730 | + | 10.2 | 0.632 | Intergenic | Intergenic | 50770 | NM_001159538 | 26382 | Mm.279187 | NM_001159538 | ENSMUSG00000024013 | Fgd2 | Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2 | FYVE, [NAME] and PH domain containing 2
chr3-103 | chr3 | 121130593 | 121130795 | + | 10.2 | 0.609 | [NAME], intron 1 of 6) | [NAME], intron 1 of 6) | 1235 | NM_028044 | 71994 | Mm.275555 | NM_028044 | ENSMUSG00000053931 | [NAME] | 1600014M03Rik|C85854|Calpo3 | calponin 3, acidic
chr14-149 | chr14 | 99479137 | 99479339 | + | 10.2 | 0.75 | intron (NM_028315, intron 16 of 20) | PB1D9|SINE|Alu | -19414 | NM_029454 | 52023 | Mm.22835 | NM_029320 | ENSMUSG00000022064 | Pibf1 | 1700017E21Rik|4930513H15Rik|4933438D16Rik|4933439E17Rik|D14Ertd581e | progesterone immunomodulatory binding factor 1
chr17-168 | chr17 | 27651601 | 27651803 | + | 10.2 | 0.778 | Intergenic | Intergenic | -11453 | NM_001013385 | 268934 | Mm.358940 | NM_001013385 | ENSMUSG00000063239 | Grm4 | [NAME] | glutamate receptor, metabotropic 4
chr17-237 | chr17 | 73185459 | 73185661 | + | 10.2 | 0.8 | promoter-TSS (NM_027166) | promoter-TSS (NM_027166) | -484 | NM_027166 | 383295 | [NAME] | NM_027166 | ENSMUSG00000039770 | Ypel5 | 2310076K21Rik|CGI-127 | yippee-like 5 (Drosophila)
chr4-361 | chr4 | 133637570 | 133637772 | + | 10.2 | 0.714 | exon (NM_001162970, exon 11 of 20) | exon (NM_001162970, exon 11 of 20) | 13304 | NM_001162970 | 230806 | Mm.240080 | NM_001162970 | ENSMUSG00000012123 | Aim1l | MGC183649 | absent in melanoma 1-like
chr6-293 | chr6 | 115773930 | 115774132 | + | 10.2 | 0.895 | intron (NM_001110506, intron 1 of 8) | intron (NM_001110506, intron 1 of 8) | 14399 | NM_001110506 | 212516 | Mm.333333 | NM_001110506 |  | BC060267 | BB124106|MGC69711 | cDNA sequence BC060267
chr4-350 | chr4 | 128481938 | 128482140 | + | 10.2 | 0.722 | intron (NM_001081098, intron 1 of 8) | intron (NM_001081098, intron 1 of 8) | 1317 | NM_001081098 | 230761 | Mm.22616 | NM_001081098 | ENSMUSG00000028799 | Zfp362 | - | zinc finger protein 362
chr11-386 | chr11 | 120534858 | 120535060 | + | 10.2 | 0.632 | intron (NM_026877, intron 1 of 15) | intron (NM_026877, intron 1 of 15) | 672 | NM_026877 | 68938 | Mm.294020 | NM_001164224 | ENSMUSG00000025142 | Aspscr1 | 1190006K01Rik|ASPC|ASPCR1|ASPL|ASPS|RCC17|TUG | alveolar soft part sarcoma chromosome region, candidate 1 (human)
chr9-136 | chr9 | 61545882 | 61546084 | + | 10.2 | 0.875 | Intergenic | Intergenic | 216334 | NM_018853 | 56040 | Mm.3158 | NM_018853 | ENSMUSG00000007892 | Rplp1 | 2410042H16Rik|Arpp1|C430017H15Rik|MGC103133 | ribosomal protein, large, P1
chr7-196 | chr7 | 146802123 | 146802325 | + | 10.2 | 0.65 | promoter-TSS (NM_001243018) | promoter-TSS (NM_001243018) | 4 | NM_001243018 | 212124 | Mm.425507 | NM_001243018 | ENSMUSG00000070357 | E030019B06Rik | Gm170 | RIKEN cDNA E030019B06 gene
chr8-997 | chr8 | 127165371 | 127165573 | + | 10.2 | 0.882 | intron (NM_175149, intron 2 of 3) | intron (NM_175149, intron 2 of 3) | 21797 | NM_175149 | 69551 | Mm.261920 | NM_175149 | ENSMUSG00000031983 | 2310022B05Rik | - | RIKEN cDNA 2310022B05 gene
chr4-337 | chr4 | 119767780 | 119767982 | + | 10.2 | 0.75 | exon (NM_010657, exon 4 of 9) | exon (NM_010657, exon 4 of 9) | -66148 | NM_007902 | 13615 | Mm.284855 | NM_007902 | ENSMUSG00000028635 | Edn2 | VIC | endothelin 2
chr9-145 | chr9 | 70106440 | 70106642 | + | 10.2 | 0.8 | [NAME] (NM_181072, intron 1 of 27) | [NAME] (NM_181072, intron 1 of 27) | 51384 | NM_181072 | 71602 | Mm.249311 | XM_003689436 | ENSMUSG00000032220 | Myo1e | 2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3 | myosin IE
chr12-985 | chr12 | 113115813 | 113116015 | + | 10.2 | 0.842 | intron (NM_011625, intron 1 of 16) | intron (NM_011625, intron 1 of 16) | 30352 | NM_011625 | 21981 | Mm.313076 | NM_011625 | ENSMUSG00000021285 | Ppp1r13b | AI449786|ASPP1|AW545810|Tp53bp2|Trp53bp2|p85 | protein phosphatase 1, regulatory (inhibitor) subunit 13B
chr17-140 | chr17 | 3490431 | 3490633 | + | 10.2 | 0.778 | [NAME] (NM_011878, intron 15 of 26) | [NAME] (NM_011878, intron 15 of 26) | -42022 | NM_001101560 | 621628 | Mm.469914 | NM_001101560 | ENSMUSG00000091530 | Cldn20 | EG621628 | claudin 20
chr4-261 | chr4 | 105882568 | 105882770 | + | 10.2 | 0.7 | Intergenic | RMER1B|Other|Other | -106149 | NM_183225 | 329908 | Mm.234544 | NM_183225 | ENSMUSG00000028514 | Usp24 | 2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851 | ubiquitin specific peptidase 24
chr11-295 | chr11 | 74584192 | 74584394 | + | 10.2 | 0.737 | promoter-TSS (NM_026197) | promoter-TSS (NM_026197) | -72 | NM_026197 | 67493 | Mm.45748 | NM_026197 | ENSMUSG00000010554 | Mettl16 | 2610100D03Rik|2810013M15Rik|A830095F14Rik|AI846133|Mett10d | methyltransferase like 16
chr18-74 | chr18 | 65811381 | 65811583 | + | 10.2 | 0.545 | intron (NM_207255, intron 3 of 5) | intron (NM_207255, intron 3 of 5) | -46440 | NM_177028 | 319888 | Mm.183576 | NM_177028 | ENSMUSG00000046610 | 5330437I02Rik | Acyl3 | RIKEN cDNA 5330437I02 gene
chr11-314 | chr11 | 86571689 | 86571891 | + | 10.2 | 0.875 | promoter-TSS (NM_001003908) | promoter-TSS (NM_001003908) | -796 | NM_001003908 | 67300 | Mm.479526 | NM_001003908 | ENSMUSG00000047126 | [NAME] | 3110065L21Rik|CHC|MGC92975|R74732 | clathrin, heavy polypeptide (Hc)
chr7-138 | chr7 | 26400005 | 26400207 | + | 10.2 | 0.875 | exon (NM_001039243, exon 2 of 2) | exon (NM_001039243, exon 2 of 2) | 805 | NM_001039243 | 632778 | Mm.423112 | NM_001039243 | ENSMUSG00000074261 | Gm7092 | EG632778|Kseg1 | predicted gene 7092
chr2-96 | chr2 | 31645486 | 31645688 | + | 10.2 | 0.688 | [NAME] (NM_009594, intron 4 of 10) | ORR1E|LTR|MaLR | 20451 | NM_183424 | 227717 | Mm.185027 | NM_183424 | ENSMUSG00000043102 | [NAME] | P518 | pyroglutamylated RFamide peptide
chr3-115 | chr3 | 131630341 | 131630543 | + | 10.2 | 0.765 | Intergenic | Intergenic | -117814 | NM_020265 | 56811 | Mm.103593 | NM_020265 | ENSMUSG00000028031 | Dkk2 | - | dickkopf homolog 2 ([NAME] laevis)
chr6-331 | chr6 | 122441674 | 122441876 | + | 10.2 | 0.636 | Intergenic | Intergenic | -5452 | NM_027664 | 108653 | [NAME] | NM_027664 | ENSMUSG00000040649 | [NAME] | 4931417E21Rik|4933426K21Rik|AA097693|AI325948|AU015629|Naags | ribosomal modification protein rimK-like family member B
chr12-720 | chr12 | 97864669 | 97864871 | + | 10.2 | 0.867 | Intergenic | Lx3A|LINE|L1 | -579338 | NM_027076 | 69423 | Mm.46121 | NM_027076 | ENSMUSG00000059695 | 1700019M22Rik | - | RIKEN cDNA 1700019M22 gene
chr3-65 | chr3 | 50984291 | 50984493 | + | 10.2 | 0.833 | Intergenic | Intergenic | -43977 | NM_009834 | 12457 | Mm.86541 | NM_009834 | ENSMUSG00000023087 | Ccrn4l | AU043840|Ccr4|nocturnin | CCR4 carbon catabolite repression 4-like (S. cerevisiae)
chr1-223 | chr1 | 164634952 | 164635154 | + | 10.2 | 0.684 | exon (NM_001081290, exon 16 of 35) | exon (NM_001081290, exon 16 of 35) | 35634 | NM_001081290 | 226562 | Mm.245446 | NM_001081290 | ENSMUSG00000040225 | Prrc2c | 1810043M20Rik|9630039I18Rik|A630006J20|Bat2d|Bat2d1|Bat2l2|E130112L15Rik|Prrc3|mKIAA1096 | proline-rich coiled-coil 2C
chr8-887 | chr8 | 114695217 | 114695419 | + | 10.2 | 0.737 | Intergenic | B4A|SINE|B4 | 160059 | NM_020584 | 57321 | [NAME] | NM_020584 | ENSMUSG00000033430 | Terf2ip | Rap1 | telomeric repeat binding factor 2, interacting protein
chr6-318 | chr6 | 119399318 | 119399520 | + | 10.2 | 0.706 | [NAME] (NM_009525, intron 1 of 4) | [NAME] (NM_009525, intron 1 of 4) | -30267 | NM_133940 | 101358 | Mm.125477 | NM_133940 | ENSMUSG00000030019 | Fbxl14 | AW322056|Fbx14l | F-box and leucine-rich repeat protein 14
chr18-79 | chr18 | 74782409 | 74782611 | + | 10.2 | 0.722 | [NAME] (NM_201600, intron 5 of 38) | [NAME] (NM_201600, intron 5 of 38) | -91732 | NR_045368 | 73606 | Mm.444734 | NR_045368 |  | 1700120E14Rik | - | RIKEN cDNA 1700120E14 gene
chr4-388 | chr4 | 153347119 | 153347321 | + | 10.2 | 0.632 | [NAME] 2 of 6) | [NAME] 2 of 6) | 1970 | NM_007859 | 13368 | Mm.388918 | NM_007859 | ENSMUSG00000029027 | Dffb | 40kDa|5730477D02Rik|CAD|CPAN|DFF40|Didff | DNA fragmentation factor, beta subunit
chr12-721 | chr12 | 97937760 | 97937962 | + | 10.2 | 0.812 | Intergenic | Lx3C|LINE|L1 | -652429 | NM_027076 | 69423 | Mm.46121 | NM_027076 | ENSMUSG00000059695 | 1700019M22Rik | - | RIKEN cDNA 1700019M22 gene
chr8-975 | chr8 | 125740474 | 125740676 | + | 10.2 | 0.778 | [NAME] (NM_177279, intron 2 of 2) | [NAME] (NM_177279, intron 2 of 2) | 3817 | NM_177279 | 320869 | Mm.258354 | NM_177279 | [NAME] | 4732415M23Rik | AI847264 | RIKEN cDNA 4732415M23 gene
chr7-175 | chr7 | 105988158 | 105988360 | + | 10.2 | 0.571 | intron (NM_009519, intron 1 of 4) | intron (NM_009519, intron 1 of 4) | 904 | NM_009519 | 22411 | Mm.22182 | NM_009519 | ENSMUSG00000015957 | Wnt11 | - | wingless-related MMTV integration site 11
chr3-71 | chr3 | 79530674 | 79530876 | + | 10.2 | 0.722 | [NAME] (NM_212452, intron 1 of 17) | [NAME] (NM_212452, intron 1 of 17) | 10941 | NM_212452 | 381489 | Mm.331086 | NM_212452 | ENSMUSG00000034009 | [NAME] | Gm1018|Lgr7 | relaxin/insulin-like family peptide receptor 1
chr2-104 | chr2 | 34889753 | 34889955 | + | 10.2 | 0.789 | [NAME] (NM_010406, intron 12 of 40) | [NAME] (NM_010406, intron 12 of 40) | 27107 | NM_010406 | 15139 | Mm.2168 | NM_010406 | ENSMUSG00000026874 | Hc | C5|C5a|He | hemolytic complement
chr8-640 | chr8 | 12314219 | 12314421 | + | 10.2 | 0.737 | Intergenic | Intergenic | -71451 | NR_027975 | 434280 | Mm.447484 | NM_001013812 |  | [NAME] | EG434280 | predicted gene 5607
chr3-73 | chr3 | 88307356 | 88307558 | + | 10.2 | 0.7 | promoter-TSS (NM_001111102) | promoter-TSS (NM_001111102) | -203 | NM_001002011 | 16905 | Mm.471227 | NM_001002011 | ENSMUSG00000028063 | [NAME] | [NAME] | lamin A
chr6-398 | chr6 | 128748377 | 128748579 | + | 10.2 | 0.824 | Intergenic | Intergenic | -9819 | NM_001159904 | 17059 | Mm.480764 | NM_001159904 | ENSMUSG00000030325 | Klrb1c | AI462337|CD161|Ly-59|Ly55c|Ly59|NK-RP1|NK1.1|NKR-P1.9|NKRP1|NKRP140|Nk-1|Nk-1.2|Nk1|Nk1.2|Nkrp1c|ly-55c | killer cell lectin-like receptor subfamily B member 1C
chr8-913 | chr8 | 122489608 | 122489810 | + | 10.2 | 0.85 | Intergenic | Intergenic | -26661 | NM_030209 | 78892 | Mm.264680 | NM_030209 | ENSMUSG00000031825 | Crispld2 | 1810049K24Rik|Lcrisp2|Lgl1|MGC116029|coffeecrisp | cysteine-rich secretory protein LCCL domain containing 2
chr8-809 | chr8 | 94590878 | 94591080 | + | 10.2 | 0.722 | Intergenic | Intergenic | -265426 | NM_008393 | 16373 | Mm.238044 | NM_001253822 | [NAME] | Irx3 | AI894186 | Iroquois related homeobox 3 (Drosophila)
chr4-343 | chr4 | 125251565 | 125251767 | + | 10.2 | 0.722 | [NAME] (NM_001081097, intron 1 of 15) | [NAME] (NM_001081097, intron 1 of 15) | 83591 | NM_001081097 | 14807 | Mm.40896 | NM_001081097 | ENSMUSG00000001985 | [NAME] | 9630027E11|GluR7-3|Glur-7|Glur7 | glutamate receptor, ionotropic, kainate 3
chr5-107 | chr5 | 23952071 | 23952273 | + | 10.2 | 0.706 | intron (NM_022418, intron 2 of 2) | intron (NM_022418, intron 2 of 2) | -1119 | NM_023229 | 66587 | Mm.28123 | NM_023229 | ENSMUSG00000028959 | Fastk | 0610011K02Rik|610011K02Rik | Fas-activated serine/threonine kinase
chr15-83 | chr15 | 77673045 | 77673247 | + | 10.2 | 0.867 | promoter-TSS (NM_022410) | promoter-TSS (NM_022410) | -601 | NM_022410 | 17886 | Mm.29677 | NM_022410 | [NAME] | [NAME] | C80049|D0Jmb2|E030044M24Rik|Fltn|Myhn-1|Myhn1|NMHC II-A|NMHCIIA|NMMHC II-a|NMMHC-A|NMMHC-IIA|TU72.6 | [NAME], heavy polypeptide 9, non-muscle
chr12-852 | chr12 | 107590265 | 107590467 | + | 10.2 | 0.7 | Intergenic | RMER19B|LTR|ERVK | 95510 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr7-160 | chr7 | 56414167 | 56414369 | + | 10.2 | 0.867 | intron (NM_001111016, intron 2 of 38) | intron (NM_001111016, intron 2 of 38) | -87291 | NM_175272 | 78286 | Mm.471488 | NM_001111016 | ENSMUSG00000052512 | Nav2 | 5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015 | neuron navigator 2
chr3-78 | chr3 | 90405748 | 90405950 | + | 10.2 | 0.824 | [NAME] (NM_011310, intron 2 of 2) | [NAME] (NM_011310, intron 2 of 2) | 1712 | NM_011310 | 20197 | Mm.440044 | NM_011310 | ENSMUSG00000001021 | S100a3 | S100E | S100 calcium binding protein A3
chr11-318 | chr11 | 88861285 | 88861487 | + | 10.2 | 0.75 | exon (NM_009546, exon 1 of 9) | exon (NM_009546, exon 1 of 9) | 669 | NM_009546 | 217069 | Mm.248445 | NM_009546 | [NAME] | Trim25 | AA960166|AL022677|EFP|Zfp147 | tripartite motif-containing 25
chr8-756 | chr8 | 86491678 | 86491880 | + | 10.2 | 0.812 | exon (NM_024184, exon 3 of 4) | exon (NM_024184, exon 3 of 4) | -5098 | NM_008854 | 18747 | Mm.19111 | NM_008854 | ENSMUSG00000005469 | Prkaca | Cs|PKA|PKCD|Pkaca | [NAME], cAMP dependent, catalytic, alpha
chr6-420 | chr6 | 136614883 | 136615085 | + | 10.2 | 0.8 | Intergenic | Intergenic | -4570 | NM_025806 | 66857 | Mm.3311 | NM_025806 | ENSMUSG00000030214 | Plbd1 | 1100001H23Rik | phospholipase B domain containing 1
chr12-654 | chr12 | 18231415 | 18231617 | + | 10.2 | 0.789 | Intergenic | Intergenic | -289800 | NM_001201330 | 236366 | Mm.352227 | NM_001033157 | ENSMUSG00000073197 | 5730507C01Rik | - | RIKEN cDNA 5730507C01 gene
chr8-882 | chr8 | 114295488 | 114295690 | + | 10.2 | 0.737 | [NAME] (NM_011801, intron 6 of 6) | [NAME] (NM_011801, intron 6 of 6) | -27840 | NM_009954 | 12927 | Mm.3758 | NM_001198839 | ENSMUSG00000031955 | Bcar1 | AI385681|Cas|Crkas | breast cancer anti-estrogen resistance 1
chr6-438 | chr6 | 142906486 | 142906688 | + | 10.2 | 0.722 | [NAME] (NM_011374, intron 1 of 4) | [NAME] (NM_011374, intron 1 of 4) | 6385 | NM_011374 | 20449 | Mm.260838 | NM_011374 | ENSMUSG00000030283 | St8sia1 | 9330109E03Rik|GD3S|Sia-T|Siat8|Siat8a | ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 1
chr17-226 | chr17 | 47867069 | 47867271 | + | 10.2 | 0.609 | [NAME] (NM_025973, intron 4 of 8) | [NAME] (NM_025973, intron 4 of 8) | 3379 | NM_025973 | 109820 | Mm.22957 | NM_025973 | ENSMUSG00000023987 | [NAME] | 2210410L06Rik|MGC117575|Upg-1|Upg1 | [NAME] (pepsinogen C)
chr15-59 | chr15 | 7171286 | 7171488 | + | 10.2 | 0.875 | intron (NM_178748, intron 18 of 21) | intron (NM_178748, intron 18 of 21) | 80845 | NM_013584 | 16880 | Mm.149720 | NM_001113386 | ENSMUSG00000054263 | [NAME] | A230075M04Rik|AW061234|LIF | leukemia inhibitory factor receptor
chr8-1006 | chr8 | 128218223 | 128218425 | + | 10.2 | 0.833 | Intergenic | Intergenic | 24606 | NM_028908 | 74393 | Mm.41709 | NM_028908 | ENSMUSG00000050930 | 4933403G14Rik | AI835009|KIAA1383|Kiaa1383|mKIAA1383 | RIKEN cDNA 4933403G14 gene
chr15-112 | chr15 | 97426084 | 97426286 | + | 10.2 | 0.889 | Intergenic | ID_B1|SINE|B4 | 110068 | NM_028003 | 71919 | Mm.12255 | NM_028003 | ENSMUSG00000022466 | Rpap3 | 2310042P20Rik|D15Ertd682e | RNA polymerase II associated protein 3
chr13-101 | chr13 | 58087930 | 58088132 | + | 10.2 | 0.619 | Intergenic | Intergenic | 36530 | NR_030544 | 100124491 |  | NR_030544 |  | Mir874 | Mirn874|mmu-mir-874 | microRNA 874
chr3-109 | chr3 | 130432581 | 130432783 | + | 10.2 | 0.778 | promoter-TSS (NM_001005859) | promoter-TSS (NM_001005859) | -460 | NM_001005859 | 68436 | Mm.140568 | NM_001005859 | ENSMUSG00000062006 | Rpl34 | 1100001I22Rik|MGC103270 | ribosomal protein L34
chr2-87 | chr2 | 29568690 | 29568892 | + | 10.2 | 0.824 | [NAME] (NM_001039087, intron 12 of 25) | [NAME] (NM_001039087, intron 12 of 25) | -48257 | NM_001177392 | 433416 | Mm.330112 | NM_001177392 | ENSMUSG00000075425 | Gm13547 | OTTMUSG00000012686 | predicted gene 13547
chr4-369 | chr4 | 135698567 | 135698769 | + | 10.2 | 0.765 | Intergenic | Intergenic | -1069 | NM_008321 | 15903 | Mm.110 | NM_008321 | ENSMUSG00000007872 | Id3 | Hlh462|Idb3|bHLHb25 | inhibitor of DNA binding 3
chr8-663 | chr8 | 13503934 | 13504136 | + | 10.2 | 0.938 | Intergenic | Intergenic | -9500 | NM_019521 | 14456 | Mm.3982 | NM_019521 | ENSMUSG00000031451 | [NAME] | Gas-6 | growth arrest specific 6
chr5-179 | chr5 | 148755595 | 148755797 | + | 10.2 | 0.824 | Intergenic | Intergenic | -13200 | NM_029920 | 77521 | Mm.244177 | NM_029920 | ENSMUSG00000029651 | Mtus2 | 5730592G18Rik|A730013O20Rik|AU067634|C130038G02Rik|Cazip|Gm763|mKIAA0774 | microtubule associated tumor suppressor candidate 2
chr15-111 | chr15 | 95906152 | 95906354 | + | 10.2 | 0.591 | non-coding (NR_003627, exon 1 of 1) | non-coding (NR_003627, exon 1 of 1) | 3730 | NR_003627 | 402773 | Mm.210567 | NR_003627 |  | D030018L15Rik | - | nuclear receptor coactivator 2 pseudogene
chr15-109 | chr15 | 93106024 | 93106226 | + | 10.2 | 0.944 | promoter-TSS (NM_001033275) | promoter-TSS (NM_001033275) | -610 | NM_001033275 | 223827 | Mm.22819 | NM_001033275 | ENSMUSG00000036197 | Gxylt1 | Glt8d3|Gm1228|Gm87 | glucoside xylosyltransferase 1
chr17-178 | chr17 | 29146303 | 29146505 | + | 10.2 | 0.778 | Intergenic | Intergenic | -1522 | NM_134115 | 106504 | Mm.439986 | NM_134115 | ENSMUSG00000024006 | Stk38 | 5830476G13Rik|9530097A09Rik|AA617404|Ndr1 | serine/threonine kinase 38
chr12-870 | chr12 | 108455738 | 108455940 | + | 10.2 | 0.684 | Intergenic | Intergenic | -501305 | NR_015512 | 71033 | Mm.159404 | NR_015512 |  | 4933406K04Rik | 4930426M03Rik|4930485I22Rik|4933427G14Rik | RIKEN cDNA 4933406K04 gene
chr12-857 | chr12 | 107752999 | 107753201 | + | 10.2 | 0.722 | Intergenic | Intergenic | -67224 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr5-118 | chr5 | 48763384 | 48763586 | + | 10.2 | 0.733 | promoter-TSS (NM_025755) | promoter-TSS (NM_025755) | -146 | NM_025755 | 66768 | Mm.29409 | NM_025755 | ENSMUSG00000029089 | Pacrgl | 4933428G09Rik | PARK2 co-regulated-like
chr8-654 | chr8 | 12820003 | 12820205 | + | 10.2 | 0.636 | [NAME] (NM_015804, intron 5 of 28) | [NAME] (NM_015804, intron 5 of 28) | 11815 | NR_045775 | 100504249 |  | NR_045775 |  | Gm15350 | OTTMUSG00000020611 | predicted gene 15350
chr2-138 | chr2 | 156846099 | 156846301 | + | 10.2 | 0.647 | exon (NM_001164663, exon 14 of 15) | exon (NM_001164663, exon 14 of 15) | -13389 | NM_025853 | 66934 | Mm.25410 | NM_025853 | ENSMUSG00000027635 | Dsn1 | 1700022L09Rik|AW552447 | DSN1, MIND kinetochore complex component, homolog (S. cerevisiae)
chr8-854 | chr8 | 109110937 | 109111139 | + | 10.2 | 0.765 | promoter-TSS (NR_045470) | promoter-TSS (NR_045470) | -5 | NR_045470 | 68692 | Mm.416843 | NR_045470 |  | 1110028F18Rik | - | RIKEN cDNA 1110028F18 gene
chr1-168 | chr1 | 9535158 | 9535360 | + | 10.2 | 0.75 | promoter-TSS (NM_021511) | promoter-TSS (NM_021511) | -230 | NM_021511 | 59014 | Mm.29061 | NM_021511 | ENSMUSG00000061024 | Rrs1 | 5730466A07Rik|AA415037|D1Ertd701e|Rrr | RRS1 ribosome biogenesis regulator homolog (S. cerevisiae)
chr19-83 | chr19 | 6316033 | 6316235 | + | 10.2 | 0.765 | [NAME], intron 20 of 36) | [NAME], intron 20 of 36) | 9677 | NM_001033342 | 240505 | Mm.329622 | NM_001033342 | ENSMUSG00000024769 | [NAME] | BC046418|MRCKgamma | CDC42 binding protein kinase gamma (DMPK-like)
chr11-285 | chr11 | 68932231 | 68932433 | + | 10.2 | 0.824 | Intergenic | tRNA-Gly-GGY|tRNA|tRNA | -1623 | NM_033041 | 84653 | Mm.98505 | NM_033041 | ENSMUSG00000023781 | Hes7 | bHLHb37 | hairy and enhancer of split 7 (Drosophila)
chr19-71 | chr19 | 4508072 | 4508274 | + | 10.2 | 0.778 | Intergenic | Intergenic | -2299 | NM_001162946 | 18563 | Mm.1845 | NM_001162946 | ENSMUSG00000024892 | Pcx | Pc|Pcb | pyruvate carboxylase
chr17-213 | chr17 | 34210538 | 34210740 | + | 10.2 | 0.875 | Intergenic | PB1D10|SINE|Alu | -18685 | NM_008206 | 15001 | Mm.116 | NM_008206 | ENSMUSG00000024334 | H2-Oa | [NAME] | histocompatibility 2, O region alpha locus
chr11-359 | chr11 | 113587297 | 113587499 | + | 10.2 | 0.667 | TTS (NM_020006) | TTS (NM_020006) | -16067 | NM_029794 | 52670 | Mm.229207 | NM_001164532 | ENSMUSG00000018727 | Cpsf4l | 0610010C04Rik|1500000C01Rik|D11Ertd636e | cleavage and polyadenylation specific factor 4-like
chr12-805 | chr12 | 105418765 | 105418967 | + | 10.2 | 0.65 | Intergenic | Lx4A|LINE|L1 | -26784 | NM_008458 | 16625 | Mm.422814 | NM_008458 | ENSMUSG00000066361 | Serpina3c | 1A1|Kalbp|Klkbp|MGC144822|spi2 | serine (or cysteine) peptidase inhibitor, clade A, member 3C
chr10-106 | chr10 | 62134746 | 62134948 | + | 10.2 | 0.778 | [NAME] (NM_001033260, intron 1 of 3) | B3|SINE|B2 | -20901 | NM_053183 | 94213 | Mm.114116 | NM_053183 | ENSMUSG00000020076 | Ddx50 | 4933429B04Rik|8430408E17Rik|GU2|RH-II | DEAD (Asp-Glu-Ala-Asp) box polypeptide 50
chr2-95 | chr2 | 31526231 | 31526433 | + | 10.2 | 0.737 | promoter-TSS (NM_144886) | promoter-TSS (NM_144886) | 75 | NM_144886 | 227715 | Mm.150972 | NM_144886 | ENSMUSG00000039356 | Exosc2 | MGC30456|Rrp4 | exosome component 2
chr5-150 | chr5 | 121654402 | 121654604 | + | 10.2 | 0.684 | promoter-TSS (NM_011290) | promoter-TSS (NM_011290) | -7 | NM_011290 | 19988 | Mm.262021 | NM_011290 | ENSMUSG00000029614 | Rpl6 | MGC117949|Taxreb107 | ribosomal protein L6
chr3-114 | chr3 | 131054567 | 131054769 | + | 10.2 | 0.75 | Intergenic | Intergenic | -6827 | NM_028943 | 74442 | Mm.273360 | NM_028943 | ENSMUSG00000050931 | Sgms2 | 4933405A16Rik|5133401H06Rik|AI854299 | sphingomyelin synthase 2
chr12-668 | chr12 | 86114451 | 86114653 | + | 10.2 | 0.526 | promoter-TSS (NM_023409) | promoter-TSS (NM_023409) | 332 | NM_028863 | 74316 | Mm.25719 | NM_028863 | ENSMUSG00000021241 | Isca2 | 0710001C05Rik|5730594E03Rik|Hbld1 | iron-sulfur cluster assembly 2 homolog (S. cerevisiae)
chr7-174 | chr7 | 105972203 | 105972405 | + | 10.2 | 0.762 | Intergenic | Intergenic | -15051 | NM_009519 | 22411 | Mm.22182 | NM_009519 | ENSMUSG00000015957 | Wnt11 | - | wingless-related MMTV integration site 11
chr15-120 | chr15 | 100466722 | 100466924 | + | 10.2 | 0.882 | [NAME] (NM_001033872, intron 1 of 3) | [NAME] (NM_001033872, intron 1 of 3) | 463 | NM_174992 | 207818 | Mm.26282 | NM_001033872 | ENSMUSG00000053559 | [NAME] | MGC7903 | small cell adhesion glycoprotein
chr11-253 | chr11 | 3627969 | 3628171 | + | 10.2 | 0.7 | [NAME] (NM_152818, intron 2 of 13) | [NAME] (NM_152818, intron 2 of 13) | 69367 | NM_198162 | 74522 | Mm.139127 | NM_001159288 | ENSMUSG00000034543 | Morc2a | 8430403M08Rik|Zcwcc1 | microrchidia 2A
chr13-100 | chr13 | 57635907 | 57636109 | + | 10.2 | 0.737 | [NAME] (NM_001166464, intron 6 of 10) | MLT-int|LTR|MaLR | 373685 | NM_009262 | 20745 | Mm.379020 | NM_001166463 | ENSMUSG00000056222 | Spock1 | Spock|Ticn1|testican | sparc/osteonectin, cwcv and [NAME]-like domains proteoglycan 1
chr11-264 | chr11 | 30240461 | 30240663 | + | 10.2 | 0.722 | Intergenic | Lx7|LINE|L1 | -120790 | NM_175836 | 20742 | Mm.466085 | NM_009260 | ENSMUSG00000020315 | Spnb2 | 9930031C03Rik|AL033301|KIAA4049|SPTB2|SPTBN1|Spnb-2|elf1|elf3|mKIAA4049 | spectrin beta 2
chr13-98 | chr13 | 54919578 | 54919780 | + | 10.2 | 0.65 | Intergenic | Intergenic | 28913 | NM_028841 | 74257 | Mm.32883 | NM_028841 | ENSMUSG00000025875 | Tspan17 | 2210021G21Rik|AI047581|Fbxo23|Tm4sf17 | tetraspanin 17
chr6-400 | chr6 | 129375416 | 129375618 | + | 10.2 | 0.8 | TTS (NM_172732) | TTS (NM_172732) | 16637 | NM_172732 | 232414 | Mm.391518 | NM_001205363 | ENSMUSG00000046080 | Clec9a | 9830005G06Rik|DNGR-1 | C-type lectin domain family 9, member a
chr17-184 | chr17 | 29497905 | 29498107 | + | 10.2 | 0.667 | 5' UTR (NM_013710, exon 1 of 16) | 5' UTR (NM_013710, exon 1 of 16) | 147 | NM_001159538 | 26382 | Mm.279187 | NM_001159538 | ENSMUSG00000024013 | Fgd2 | Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2 | FYVE, [NAME] and PH domain containing 2
chr19-102 | chr19 | 27844899 | 27845101 | + | 10.2 | 0.938 | [NAME] (NM_001166414, intron 17 of 17) | [NAME] (NM_001166414, intron 17 of 17) | 212438 | NM_001166414 | 19726 | Mm.313321 | NM_001166414 | ENSMUSG00000040929 | Rfx3 | C230093O12Rik|MRFX3 | regulatory factor X, 3 (influences HLA class II expression)
chr8-849 | chr8 | 108651911 | 108652113 | + | 10.2 | 0.875 | 3' UTR (NM_010901, exon 10 of 10) | 3' UTR (NM_010901, exon 10 of 10) | -7288 | NR_040345 | 69771 | Mm.393274 | NR_040344 |  | 1810019D21Rik | - | RIKEN cDNA 1810019D21 gene
chr7-146 | chr7 | 31220920 | 31221122 | + | 10.2 | 0.667 | exon (NM_007467, exon 14 of 17) | exon (NM_007467, exon 14 of 17) | 9580 | NM_007467 | 11803 | Mm.2381 | NM_007467 | ENSMUSG00000006651 | Aplp1 | - | amyloid beta (A4) precursor-like protein 1
chr2-143 | chr2 | 160990836 | 160991038 | + | 10.2 | 0.611 | Intergenic | LTR85a|LTR|Gypsy? | -56145 | NM_173368 | 71389 | Mm.122738 | NM_173368 | ENSMUSG00000057133 | Chd6 | 5430439G14Rik|6330406J24Rik | chromodomain helicase DNA binding protein 6
chr16-71 | chr16 | 11203493 | 11203695 | + | 10.2 | 0.682 | promoter-TSS (NM_025546) | promoter-TSS (NM_025546) | 118 | NR_038156 | 69918 | Mm.440400 | NR_038154 |  | 2610020C07Rik | - | RIKEN cDNA 2610020C07 gene
chr6-462 | chr6 | 145885038 | 145885240 | + | 10.2 | 0.762 | [NAME] (NM_010656, intron 1 of 2) | B4A|SINE|B4 | 2472 | NM_010656 | 16651 | Mm.49689 | NM_010656 | ENSMUSG00000030255 | Sspn | Krag | sarcospan
chr4-365 | chr4 | 134959880 | 134960082 | + | 10.2 | 0.824 | Intergenic | Intergenic | -5839 | NM_145555 | 230822 | Mm.35548 | NM_001168498 | ENSMUSG00000043924 | A330049M08Rik | AA545175|Mp11 | RIKEN cDNA A330049M08 gene
chr11-315 | chr11 | 87669173 | 87669375 | + | 10.2 | 0.684 | intron (NM_001039684, intron 4 of 17) | intron (NM_001039684, intron 4 of 17) | 2547 | NM_001039684 | 380718 | Mm.24404 | NM_001039684 | ENSMUSG00000034121 | Mks1 | AK190930|B8d3 | Meckel syndrome, type 1
chr10-142 | chr10 | 118658802 | 118659004 | + | 10.2 | 0.75 | [NAME] (NM_027994, intron 2 of 14) | [NAME] (NM_027994, intron 2 of 14) | 18208 | NM_027994 | 71902 | Mm.203965 | NM_027994 | ENSMUSG00000020114 | Cand1 | 2310038O07Rik|6330512O03Rik|AI195005|AI846556|D10Ertd516e|Tp120a|mKIAA0829 | cullin associated and neddylation disassociated 1
chr5-125 | chr5 | 75096643 | 75096845 | + | 10.2 | 0.867 | [NAME] (NM_001159577, intron 1 of 10) | [NAME] (NM_001159577, intron 1 of 10) | 2184 | NM_001159577 | 16924 | Mm.440403 | NM_001159577 | ENSMUSG00000029228 | Lnx1 | [NAME] | ligand of numb-protein X 1
chr19-73 | chr19 | 4900001 | 4900203 | + | 10.2 | 0.867 | intron (NM_001033128, intron 8 of 16) | MTE2a|LTR|MaLR | 6525 | NM_001033128 | 52028 | Mm.23636 | NM_001033128 | ENSMUSG00000006464 | Bbs1 | AI451249|D19Ertd609e | [NAME] syndrome 1 (human)
chr11-273 | chr11 | 55274756 | 55274958 | + | 10.2 | 0.667 | promoter-TSS (NM_009720) | promoter-TSS (NM_009720) | -217 | NM_009720 | 11927 | Mm.217759 | NM_009720 | ENSMUSG00000018585 | [NAME] | AI256639|Atx1 | ATX1 (antioxidant protein 1) homolog 1 (yeast)
chr4-292 | chr4 | 114460614 | 114460816 | + | 10.2 | 0.867 | Intergenic | Intergenic | -33610 | NR_033617 | 433746 | Mm.388908 | NR_033617 |  | Gm12830 | OTTMUSG00000008584 | predicted gene 12830
chr6-376 | chr6 | 126504550 | 126504752 | + | 10.2 | 0.667 | Intergenic | Intergenic | -19078 | NM_145983 | 16493 | Mm.222831 | NM_145983 | ENSMUSG00000045534 | Kcna5 | [NAME] | potassium voltage-gated channel, shaker-related subfamily, member 5
chr19-103 | chr19 | 29328375 | 29328577 | + | 10.2 | 0.6 | intron (NM_008413, intron 2 of 24) | intron (NM_008413, intron 2 of 24) | 2158 | NM_008413 | 16452 | Mm.275839 | NM_001048177 | ENSMUSG00000024789 | Jak2 | AI504024|C81284|Fd17 | Janus kinase 2
chr6-447 | chr6 | 144462348 | 144462550 | + | 10.2 | 0.684 | Intergenic | Intergenic | -158939 | NR_040519 | 66760 | Mm.233631 | NR_040519 |  | 4933425H06Rik | - | RIKEN cDNA 4933425H06 gene
chr19-119 | chr19 | 46209999 | 46210201 | + | 10.2 | 0.762 | TTS (NM_008852) | TTS (NM_008852) | 3711 | NM_007703 | 12686 | Mm.21806 | NM_007703 | ENSMUSG00000038754 | Elovl3 | CIN-2|Cig30 | elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
chr13-93 | chr13 | 51514029 | 51514231 | + | 10.2 | 0.667 | 5' UTR (NM_010101, exon 2 of 2) | 5' UTR (NM_010101, exon 2 of 2) | 10143 | NM_010101 | 13610 | Mm.136736 | NM_010101 | ENSMUSG00000067586 | S1pr3 | AI132464|Edg3|Lpb3|S1p3 | sphingosine-1-phosphate receptor 3
chr8-737 | chr8 | 80327902 | 80328104 | + | 10.2 | 0.684 | Intergenic | Intergenic | -79652 | NM_010332 | 13617 | Mm.392296 | NM_010332 | ENSMUSG00000031616 | Ednra | ET-AR|ETa|Gpcr10 | endothelin receptor type A
chr9-110 | chr9 | 21675360 | 21675562 | + | 10.2 | 0.611 | Intergenic | Intergenic | -18382 | NM_177030 | 319899 | Mm.128153 | NM_177030 | ENSMUSG00000032198 | Dock6 | 2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395 | dedicator of cytokinesis 6
chr6-428 | chr6 | 138004170 | 138004372 | + | 10.2 | 0.737 | exon (NM_177787, exon 3 of 9) | exon (NM_177787, exon 3 of 9) | 24166 | NM_177787 | 277898 | Mm.269823 | NM_177787 | ENSMUSG00000044378 | Slc15a5 | 9830102E05Rik | solute carrier family 15, member 5
chr13-105 | chr13 | 71015840 | 71016042 | + | 10.2 | 0.778 | Intergenic | Intergenic | -5885 | NM_029873 | 77166 | Mm.159859 | NM_029873 | ENSMUSG00000021600 | 8030423J24Rik | - | RIKEN cDNA 8030423J24 gene
chr9-108 | chr9 | 21119333 | 21119535 | + | 10.2 | 0.722 | Intergenic | Intergenic | -2657 | NM_001110300 | 11768 | Mm.22239 | NM_001110300 | ENSMUSG00000003309 | Ap1m2 | D9Ertd818e|[m]1B|mu1B | adaptor protein complex AP-1, mu 2 subunit
chr6-287 | chr6 | 114515396 | 114515598 | + | 10.2 | 0.933 | Intergenic | Intergenic | -77622 | NM_028835 | 74244 | Mm.275332 | NM_001253717 | ENSMUSG00000030314 | Atg7 | 1810013K23Rik|Agp7|Apg7l|Atg7l | autophagy related 7
chr11-335 | chr11 | 99029429 | 99029631 | + | 10.2 | 0.737 | Intergenic | Intergenic | -13139 | NM_007719 | 12775 | Mm.2932 | NM_007719 | ENSMUSG00000037944 | Ccr7 | CD197|Cdw197|Cmkbr7|EBI1|Ebi1h | chemokine (C-C motif) receptor 7
chr9-106 | chr9 | 20973349 | 20973551 | + | 10.2 | 0.684 | [NAME] (NM_183408, intron 1 of 14) | [NAME] (NM_183408, intron 1 of 14) | 3292 | NM_183408 | 18577 | Mm.191749 | NM_019798 | ENSMUSG00000032177 | Pde4a | D9Ertd60e|Dpde2 | phosphodiesterase 4A, cAMP specific
chr15-115 | chr15 | 98816051 | 98816253 | + | 10.2 | 0.778 | promoter-TSS (NR_045991) | promoter-TSS (NR_045991) | -244 | NR_045991 | 75951 | Mm.441657 | NR_045991 |  | 4930578M01Rik | 3010001K12Rik | RIKEN cDNA 4930578M01 gene
chr8-749 | chr8 | 85889944 | 85890146 | + | 10.2 | 0.938 | [NAME] (NM_026233, intron 7 of 10) | [NAME] (NM_026233, intron 7 of 10) | 17674 | NM_026233 | 67555 | Mm.84115 | XM_001474200 | ENSMUSG00000035057 | 4933434I20Rik | [NAME] | RIKEN cDNA 4933434I20 gene
chr19-69 | chr19 | 3575769 | 3575971 | + | 10.2 | 0.722 | promoter-TSS (NM_001164159) | promoter-TSS (NM_001164159) | -121 | NM_028999 | 52036 | Mm.284686 | NM_001164159 | ENSMUSG00000024908 | Ppp6r3 | 4930528G08Rik|9130026N02Rik|D19Bwg1430e|D19Ertd703e|Pp6r3|Ppcs3|Pptcs3|Sapl|Saps3|mKIAA1558 | protein phosphatase 6, regulatory subunit 3
chr15-72 | chr15 | 72898405 | 72898607 | + | 10.2 | 0.7 | Intergenic | ID_B1|SINE|B4 | -6872 | NM_001164643 | 76510 | Mm.158902 | NM_001164641 | ENSMUSG00000047921 | Trappc9 | 1810044A24Rik|2900005P22Rik|4632408O18Rik|Ibp|KIAA1882|Nibp|TRS130|mKIAA1882 | trafficking protein particle complex 9
chr16-99 | chr16 | 92103951 | 92104153 | + | 10.2 | 0.765 | [NAME] intron 2 of 2) | [NAME] intron 2 of 2) | 45471 | NM_080456 | 121022 | Mm.217354 | NM_080456 | ENSMUSG00000039680 | Mrps6 | AW046321 | mitochondrial ribosomal protein S6
chr9-122 | chr9 | 44232996 | 44233198 | + | 10.2 | 0.632 | Intergenic | RMER10A|LTR|ERVL | -7007 | NM_201372 | 382073 | [NAME] | NM_201372 | ENSMUSG00000043923 | Ccdc84 | D630044F24Rik|Gm1114|MGC106805 | coiled-coil domain containing 84
chr19-80 | chr19 | 5870118 | 5870320 | + | 10.2 | 0.75 | [NAME] (NM_026169, intron 3 of 10) | [NAME] (NM_026169, intron 3 of 10) | 4989 | NM_026169 | 67457 | [NAME] | NM_026169 | ENSMUSG00000024816 | Frmd8 | 1200004M23Rik|2310035N23Rik|4931429L16Rik|AU018809 | FERM domain containing 8
chr4-234 | chr4 | 46510439 | 46510641 | + | 10.2 | 0.875 | intron (NM_053179, intron 2 of 5) | intron (NM_053179, intron 2 of 5) | 8339 | NM_053179 | 94181 | Mm.249349 | NM_053179 | ENSMUSG00000028334 | Nans | 4632418E04Rik|BB056474|Sas | N-acetylneuraminic acid synthase (sialic acid synthase)
chr18-61 | chr18 | 35911801 | 35912003 | + | 10.2 | 0.524 | Intergenic | Intergenic | -11694 | NM_028261 | 72512 | Mm.45995 | NM_028261 | ENSMUSG00000024349 | Tmem173 | 2610307O08Rik|ERIS|MPYS|Mita|STING | [NAME] 173
chr2-122 | chr2 | 128710111 | 128710313 | + | 10.2 | 0.875 | intron (NM_024237, intron 3 of 7) | intron (NM_024237, intron 3 of 7) | 20544 | NM_024237 | 70370 | Mm.5107 | NM_024237 | ENSMUSG00000027386 | Fbln7 | 1600015H20Rik|AI464334|TM14 | fibulin 7
chr10-111 | chr10 | 75103850 | 75104052 | + | 10.2 | 0.688 | [NAME] (NM_027890, intron 4 of 14) | [NAME] (NM_027890, intron 4 of 14) | 2802 | NM_001162913 | 71733 | Mm.247956 | NM_001162913 | ENSMUSG00000006342 | Susd2 | 1200011D11Rik | sushi domain containing 2
chr2-108 | chr2 | 52931542 | 52931744 | + | 10.2 | 0.938 | [NAME] (NM_172409, intron 8 of 26) | [NAME] (NM_172409, intron 8 of 26) | 118578 | NM_018785 | 56194 | Mm.393219 | NM_018785 | ENSMUSG00000061136 | Prpf40a | 2810012K09Rik|FBP11|Fnbp11|Fnbp3 | PRP40 pre-mRNA processing factor 40 homolog A (yeast)
chr14-142 | chr14 | 99153882 | 99154084 | + | 10.2 | 0.556 | Intergenic | L1_Mus4|LINE|L1 | 291372 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr15-93 | chr15 | 80435018 | 80435220 | + | 10.2 | 0.933 | Intergenic | B3|SINE|B2 | -18794 | NM_010815 | 17444 | [NAME] | NM_010815 | ENSMUSG00000042351 | Grap2 | GRAP-2|GRB2L|GRID|Gads|GrbX|Grf40|GrpL|Mona|P38 | GRB2-related adaptor protein 2
chr12-678 | chr12 | 87753616 | 87753818 | + | 10.2 | 0.824 | [NAME] (NM_001159500, intron 1 of 6) | [NAME] (NM_001159500, intron 1 of 6) | -8877 | NM_011934 | 26380 | Mm.235550 | NM_001159500 | ENSMUSG00000021255 | Esrrb | Err2|Errb|Estrrb|Nr3b2 | estrogen related receptor, beta
chr11-346 | chr11 | 101488215 | 101488417 | + | 10.2 | 0.571 | promoter-TSS (NM_025654) | promoter-TSS (NM_025654) | -947 | NM_025654 | 66599 | Mm.41449 | NM_025654 | ENSMUSG00000010362 | Rdm1 | 2410008M22Rik|AW212028|Rad52b | RAD52 motif 1
chr7-153 | chr7 | 51560810 | 51561012 | + | 10.2 | 0.545 | intron (NM_009131, intron 3 of 3) | intron (NM_009131, intron 3 of 3) | 1418 | NM_009131 | 20256 | Mm.20428 | NM_009131 | ENSMUSG00000004473 | Clec11a | AW457320|Clecsf3|Scgf | C-type lectin domain family 11, member a
chr8-810 | chr8 | 94898692 | 94898894 | + | 10.2 | 0.765 | Intergenic | PB1D10|SINE|Alu | 17098 | NM_018826 | 54352 | Mm.101153 | NM_018826 | ENSMUSG00000031737 | Irx5 | - | Iroquois related homeobox 5 (Drosophila)
chr4-259 | chr4 | 104918006 | 104918208 | + | 10.2 | 0.7 | Intergenic | Intergenic | 88155 | NM_080555 | 67916 | Mm.348326 | NM_080555 | ENSMUSG00000028517 | Ppap2b | 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b | phosphatidic acid phosphatase type 2B
chr6-263 | chr6 | 48927723 | 48927925 | + | 10.2 | 0.632 | intron (NM_001029987, intron 2 of 3) | intron (NM_001029987, intron 2 of 3) | 2682 | NM_001029987 | 243376 | Mm.244112 | NM_001029987 | ENSMUSG00000068536 | Doxl2 | - | diamine oxidase-like protein 2
chr8-894 | chr8 | 119517622 | 119517824 | + | 10.2 | 0.667 | promoter-TSS (NM_026572) | promoter-TSS (NM_026572) | -374 | NM_026572 | 68133 | Mm.258462 | NM_026572 | ENSMUSG00000034424 | Gcsh | 1100001L02Rik|5730591C18Rik | glycine cleavage system protein H (aminomethyl carrier)
chr1-234 | chr1 | 184646247 | 184646449 | + | 10.2 | 0.824 | Intergenic | (TCTG)n|Simple_repeat|Simple_repeat | 32963 | NM_001033547 | 433386 | Mm.338103 | NM_001033547 | ENSMUSG00000043429 | 4922505E12Rik | - | RIKEN cDNA 4922505E12 gene
chr2-125 | chr2 | 129429358 | 129429560 | + | 10.2 | 0.647 | intron (NM_001177646, intron 2 of 8) | intron (NM_001177646, intron 2 of 8) | 10528 | NM_001177647 | 19261 | Mm.1682 | NM_001177646 | ENSMUSG00000037902 | Sirpa | AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP | signal-regulatory protein alpha
chr9-160 | chr9 | 110240081 | 110240283 | + | 10.2 | 0.765 | [NAME] (NM_001001144, intron 1 of 22) | B1_Mus2|SINE|Alu | 4385 | NM_001001144 | 235623 | Mm.288741 | NM_001001144 | ENSMUSG00000032485 | Scap | 9530044G19|mKIAA0199 | SREBF chaperone
chr4-356 | chr4 | 130188536 | 130188738 | + | 10.2 | 0.65 | Intergenic | B3|SINE|B2 | -30637 | NM_030722 | 80912 | Mm.440206 | NM_001159603 | ENSMUSG00000028580 | Pum1 | AA517475|Pumm|mKIAA0099 | pumilio 1 (Drosophila)
chr2-156 | chr2 | 179771777 | 179771979 | + | 10.2 | 0.667 | intron (NM_011969, intron 5 of 6) | intron (NM_011969, intron 5 of 6) | 5229 | NM_011969 | 26444 | Mm.21728 | NM_011969 | ENSMUSG00000027566 | Psma7 | C6-I | proteasome (prosome, macropain) subunit, alpha type 7
chr13-107 | chr13 | 94935860 | 94936062 | + | 10.2 | 0.545 | intron (NM_172589, intron 2 of 3) | intron (NM_172589, intron 2 of 3) | 108210 | NM_172589 | 218454 | Mm.316553 | NM_172589 | ENSMUSG00000045312 | Lhfpl2 | 6030465B15|AI447312|AW050335|mKIAA0206|vgim | lipoma HMGIC fusion partner-like 2
chr1-244 | chr1 | 194206626 | 194206828 | + | 10.2 | 0.812 | intron (NM_001038607, intron 7 of 10) | L2b|LINE|L2 | 191973 | NM_010600 | 16510 | Mm.4489 | NM_001038607 | ENSMUSG00000058248 | Kcnh1 | M-eag|MGC124419|MGC124420 | potassium voltage-gated channel, subfamily H (eag-related), member 1
chr15-106 | chr15 | 87729587 | 87729789 | + | 10.2 | 0.833 | Intergenic | Intergenic | 183711 | NR_045510 | 106014 | [NAME] | NM_001252310 | ENSMUSG00000054863 | Fam19a5 | TAFA5|Tafa-5|Tara-5 | family with sequence similarity 19, member A5
chr9-153 | chr9 | 106296340 | 106296542 | + | 10.2 | 0.667 | Intergenic | Intergenic | 25478 | NM_153459 | 235584 | Mm.275584 | NM_153459 | ENSMUSG00000053716 | Dusp7 | AU015694|Mkpx|Pyst2 | dual specificity phosphatase 7
chr8-783 | chr8 | 90408625 | 90408827 | + | 10.2 | 0.737 | intron (NM_033327, intron 2 of 7) | intron (NM_033327, intron 2 of 7) | 74768 | NM_033327 | 94187 | [NAME] | NM_033327 | ENSMUSG00000045333 | Zfp423 | Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12 | zinc finger protein 423
chr8-626 | chr8 | 11165690 | 11165892 | + | 10.2 | 0.778 | Intergenic | Intergenic | 147035 | NM_009931 | 12826 | Mm.738 | NM_009931 | ENSMUSG00000031502 | Col4a1 | Bru|Col4a-1|Del(8)44H|Raw|Svc | collagen, type IV, alpha 1
chr12-906 | chr12 | 110158320 | 110158522 | + | 10.2 | 0.737 | [NAME] (NM_177602, intron 2 of 6) | MTC|LTR|MaLR | 25939 | NM_177602 | 212198 | Mm.342082 | NM_177602 | ENSMUSG00000040877 | Wdr25 | B930090D16Rik | WD repeat domain 25
chr9-137 | chr9 | 61746338 | 61746540 | + | 10.2 | 0.706 | Intergenic | Intergenic | 15878 | NM_018853 | 56040 | Mm.3158 | NM_018853 | ENSMUSG00000007892 | Rplp1 | 2410042H16Rik|Arpp1|C430017H15Rik|MGC103133 | ribosomal protein, large, P1
chr19-124 | chr19 | 47413746 | 47413948 | + | 10.2 | 0.727 | [NAME], intron 6 of 13) | [NAME], intron 6 of 13) | 110514 | [NAME] | 18011 | Mm.313651 | [NAME] | ENSMUSG00000006435 | Neurl1a | 2410129E16Rik|AI450910|AI481072|Neu1|Neur1|Neurl|Nlz|Rnf67 | neuralized homolog 1A (Drosophila)
chr2-77 | chr2 | 17947713 | 17947915 | + | 10.2 | 0.667 | non-coding (NR_028376, exon 2 of 2) | non-coding (NR_028376, exon 2 of 2) | -1062 | NR_028378 | 100034739 | Mm.401643 | NR_028378 |  | Gm17762 | - | predicted gene, 17762
chr8-671 | chr8 | 14406825 | 14407027 | + | 10.2 | 0.833 | intron (NM_172910, intron 3 of 15) | intron (NM_172910, intron 3 of 15) | 311051 | NM_172910 | 244310 | Mm.404697 | NM_001145965 | ENSMUSG00000047495 | Dlgap2 | 6430596N04Rik|DAP2|Sapap2 | discs, large (Drosophila) homolog-associated protein 2
chr16-82 | chr16 | 20548639 | 20548841 | + | 10.2 | 0.682 | promoter-TSS (NR_030670) | promoter-TSS (NR_030670) | 64 | NM_013852 | 27406 | Mm.27135 | NM_013852 | ENSMUSG00000003234 | Abcf3 | AI326318|AU016058|BB119416 | ATP-binding cassette, sub-family F (GCN20), member 3
chr12-765 | chr12 | 103280433 | 103280635 | + | 10.2 | 0.789 | Intergenic | Intergenic | 66350 | NM_016856 | 51786 | Mm.716 | NM_016856 | ENSMUSG00000041781 | Cpsf2 | 100kDa|2610024B04Rik|AI662483|Cpsf|MCPSF|mKIAA1367 | cleavage and polyadenylation specific factor 2
chr11-306 | chr11 | 78669853 | 78670055 | + | 10.2 | 0.933 | Intergenic | Intergenic | 29857 | NM_001076681 | 66274 | Mm.477207 | NM_001076681 | ENSMUSG00000072640 | 1810012P15Rik | - | RIKEN cDNA 1810012P15 gene
chr4-393 | chr4 | 155039367 | 155039569 | + | 10.2 | 0.684 | [NAME] (NM_001256107, intron 2 of 19) | [NAME] (NM_001256107, intron 2 of 19) | 3895 | NM_001256108 | 76580 | [NAME] | NM_001256107 | ENSMUSG00000029060 | Mib2 | 2210008I11Rik|Zzank1|skd | mindbomb homolog 2 (Drosophila)
chr12-839 | chr12 | 106873057 | 106873259 | + | 10.2 | 0.778 | exon (NM_029654, exon 34 of 42) | exon (NM_029654, exon 34 of 42) | 30857 | NM_007539 | 12061 | Mm.377078 | NM_007539 | ENSMUSG00000041347 | Bdkrb1 | B1BKR|B1R|BKR1|BRADYB1|Bdkrb | bradykinin receptor, beta 1
chr12-968 | chr12 | 112372749 | 112372951 | + | 10.2 | 0.647 | Intergenic | Intergenic | -31909 | NM_011632 | 22031 | Mm.27431 | NM_001048206 | ENSMUSG00000021277 | Traf3 | AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|amn | TNF receptor-associated factor 3
chr18-68 | chr18 | 39215591 | 39215793 | + | 10.2 | 0.778 | [NAME] (NM_175164, intron 1 of 22) | [NAME] (NM_175164, intron 1 of 22) | 62893 | NM_175164 | 71302 | Mm.329396 | NM_175164 | ENSMUSG00000036452 | Arhgap26 | 1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621 | Rho GTPase activating protein 26
chr4-237 | chr4 | 55546082 | 55546284 | + | 10.2 | 0.722 | promoter-TSS (NM_010637) | promoter-TSS (NM_010637) | -836 | NM_010637 | 16600 | Mm.4325 | NM_010637 | ENSMUSG00000003032 | Klf4 | EZF|Gklf|Zie | Kruppel-like factor 4 (gut)
chr6-373 | chr6 | 125534699 | 125534901 | + | 10.2 | 0.667 | [NAME] (NM_011708, intron 6 of 51) | [NAME] (NM_011708, intron 6 of 51) | 31834 | NM_011708 | 22371 | Mm.22339 | NM_011708 | ENSMUSG00000001930 | [NAME] | 6820430P06Rik|AI551257|B130011O06Rik|C630030D09|F8VWF|VWD | [NAME] factor homolog
chr8-714 | chr8 | 35141137 | 35141339 | + | 10.2 | 0.667 | Intergenic | Intergenic | 30327 | NM_011722 | 22428 | Mm.150373 | NM_011722 | ENSMUSG00000031516 | Dctn6 | AU044699|WS-3|p27 | [NAME] 6
chr8-735 | chr8 | 80134391 | 80134593 | + | 10.2 | 0.737 | promoter-TSS (NM_145599) | promoter-TSS (NM_145599) | 60 | NM_145599 | 234463 | Mm.449857 | NM_145599 | ENSMUSG00000031617 | Tmem184c | 8430433H16Rik|AI645453|AL033298|BC004056|MGC8158|Tmem34 | [NAME] 184C
chr3-88 | chr3 | 97485083 | 97485285 | + | 10.2 | 0.65 | Intergenic | Intergenic | 23049 | NM_182997 | 108097 | Mm.31175 | NM_182997 | ENSMUSG00000038205 | Prkab2 | 5730553K21Rik|AW049591|BB124140 | [NAME], AMP-activated, beta 2 non-catalytic subunit
chr15-102 | chr15 | 84885555 | 84885757 | + | 10.2 | 0.7 | [NAME] (NM_133750, intron 6 of 8) | [NAME] (NM_133750, intron 6 of 8) | 18164 | NM_133750 | 73225 | Mm.247535 | NM_133750 | ENSMUSG00000022434 | Fam118a | 3110048E14Rik|C230014M12Rik | family with sequence similarity 118, member A
chr18-48 | chr18 | 6136645 | 6136847 | + | 10.2 | 0.55 | promoter-TSS (NM_029277) | promoter-TSS (NM_029277) | -650 | NM_001039692 | 75415 | Mm.239675 | NM_001039692 | ENSMUSG00000041225 | Arhgap12 | 2810011M08Rik | Rho GTPase activating protein 12
chr1-227 | chr1 | 174586563 | 174586765 | + | 10.2 | 0.765 | Intergenic | Intergenic | -23559 | NM_026725 | 68440 | Mm.33024 | NM_026725 | ENSMUSG00000026544 | [NAME] | 1300005N15Rik|LDP-3|MGC73633 | dual specificity phosphatase 23
chr19-110 | chr19 | 44549805 | 44550007 | + | 10.2 | 0.812 | Intergenic | Intergenic | -18056 | NM_011720 | 22423 | Mm.88365 | NM_011720 | ENSMUSG00000036961 | Wnt8b | - | wingless related MMTV integration site 8b
chr6-432 | chr6 | 140680022 | 140680224 | + | 10.2 | 0.875 | Intergenic | Intergenic | 107304 | NM_009637 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr12-912 | chr12 | 110350066 | 110350268 | + | 10.2 | 0.545 | Intergenic | Intergenic | -43740 | NM_001163175 | 380785 | Mm.342085 | NM_001163175 | ENSMUSG00000040867 | Begain | BM948371|Gm897 | brain-enriched guanylate kinase-associated
chr1-220 | chr1 | 156038199 | 156038401 | + | 10.2 | 0.875 | Intergenic | Lx8|LINE|L1 | -10017 | NM_001204908 | 100503355 | Mm.484410 | NM_001204908 |  | Zfp648 | ENSMUSG00000066797|Gm10178|Gm203 | zinc finger protein 648
chr6-288 | chr6 | 114637817 | 114638019 | + | 10.2 | 0.65 | [NAME] (NM_001253718, intron 8 of 19) | [NAME] (NM_001253718, intron 8 of 19) | 44799 | NM_001253717 | 74244 | Mm.275332 | NM_001253717 | ENSMUSG00000030314 | Atg7 | 1810013K23Rik|Agp7|Apg7l|Atg7l | autophagy related 7
chr8-808 | chr8 | 94537973 | 94538175 | + | 10.2 | 0.867 | Intergenic | Intergenic | -212521 | NM_008393 | 16373 | Mm.238044 | NM_001253822 | [NAME] | Irx3 | AI894186 | Iroquois related homeobox 3 (Drosophila)
chr4-284 | chr4 | 108721965 | 108722167 | + | 10.2 | 0.882 | [NAME] (NM_146150, intron 19 of 30) | MTC|LTR|MaLR | 31806 | NR_030432 | 791075 |  | NR_030432 |  | [NAME] | Mirn761|mir-761|mmu-mir-761 | microRNA 761
chr2-135 | chr2 | 154503183 | 154503385 | + | 10.2 | 0.765 | [NAME] (NM_029362, intron 1 of 4) | [NAME] (NM_029362, intron 1 of 4) | 20522 | NM_029362 | 75608 | [NAME] | NM_029362 | ENSMUSG00000038467 | Chmp4b | 2010012F05Rik|C76846|Snf7-2 | charged multivesicular body protein 4B
chr4-376 | chr4 | 146019997 | 146020199 | + | 10.2 | 0.667 | Intergenic | Intergenic | -14827 | NR_030771 | 627585 | Mm.424988 | NM_001039233 |  | Gm13034 | OTTMUSG00000010105 | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene
chr8-702 | chr8 | 26323488 | 26323690 | + | 10.2 | 0.667 | Intergenic | Intergenic | -11668 | NM_177089 | 320165 | Mm.308452 | NM_177089 | ENSMUSG00000065954 | [NAME] | 4833447E04Rik|AA960202|B230378H13Rik | transforming, acidic coiled-coil containing protein 1
chr8-834 | chr8 | 102617338 | 102617540 | + | 10.2 | 0.875 | Intergenic | ORR1A2-int|LTR|MaLR | -677082 | NM_001039154 | 12564 | [NAME] | NM_001039154 | ENSMUSG00000036510 | [NAME] | AI851472|cad8 | cadherin 8
chr12-735 | chr12 | 100708734 | 100708936 | + | 10.2 | 0.778 | Intergenic | Intergenic | -20551 | NM_183186 | 71375 | Mm.489662 | NM_183186 | ENSMUSG00000033713 | Foxn3 | 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1|MGC107530|MGC36260 | forkhead box N3
chr12-834 | chr12 | 106656981 | 106657183 | + | 10.2 | 0.722 | Intergenic | Intergenic | -15112 | NR_045085 | 100040339 | Mm.240751 | NR_045085 |  | Gm2721 | - | predicted gene 2721
chr6-314 | chr6 | 118925043 | 118925245 | + | 10.2 | 0.778 | [NAME] (NM_001256002, intron 3 of 47) | Lx9|LINE|L1 | 94968 | NR_046053 | 74363 | Mm.399403 | NR_046053 |  | 4931430N09Rik | - | RIKEN cDNA 4931430N09 gene
chr1-176 | chr1 | 36617851 | 36618053 | + | 10.2 | 0.765 | Intergenic | Intergenic | -2726 | NM_001126047 | 20353 | Mm.29558 | NM_001126047 | ENSMUSG00000026121 | Sema4c | AI426163|Semacl1|Semaf|Semai|mKIAA1739 | sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C
chr2-103 | chr2 | 34726451 | 34726653 | + | 10.2 | 0.722 | promoter-TSS (NM_080554) | promoter-TSS (NM_080554) | -70 | NM_080554 | 66998 | Mm.270632 | NM_080554 | ENSMUSG00000026869 | Psmd5 | 1500032A03Rik|AW475925|KIAA0072|S5b|W91691|mKIAA0072 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 5
chr15-76 | chr15 | 75520233 | 75520435 | + | 10.2 | 0.6 | Intergenic | Intergenic | -11114 | NM_028404 | 72960 | Mm.182401 | NM_028404 | ENSMUSG00000000934 | Top1mt | 2900052H09Rik | DNA topoisomerase 1, mitochondrial
chr8-685 | chr8 | 19783712 | 19783914 | + | 10.2 | 0.875 | Intergenic | RLTR1D|LTR|ERV1 | 54237 | NM_001039553 | 626415 | Mm.425517 | NM_001039553 | ENSMUSG00000074456 | 4930467E23Rik | ENSMUSG00000074453|OTTMUSG00000018948|TSAP | RIKEN cDNA 4930467E23 gene
chr14-152 | chr14 | 99543566 | 99543768 | + | 10.2 | 0.833 | intron (NM_029320, intron 9 of 17) | intron (NM_029320, intron 9 of 17) | -44678 | NM_028315 | 72662 | Mm.163339 | NM_028315 | ENSMUSG00000033166 | Dis3 | 2810028N01Rik | DIS3 mitotic control homolog (S. cerevisiae)
chr17-223 | chr17 | 46919870 | 46920072 | + | 10.2 | 0.632 | promoter-TSS (NM_025433) | promoter-TSS (NM_025433) | -366 | NM_025433 | 66229 | Mm.468212 | NM_025433 | ENSMUSG00000063888 | Rpl7l1 | 1500016H10Rik | ribosomal protein L7-like 1
chr6-274 | chr6 | 113301766 | 113301968 | + | 10.2 | 0.625 | Intergenic | Intergenic | -7951 | NM_133926 | 52163 | Mm.277373 | NM_133926 | ENSMUSG00000030272 | Camk1 | AI505105|CaMKIalpha|D6Ertd263e | calcium/calmodulin-dependent protein kinase I
chr16-90 | chr16 | 35363227 | 35363429 | + | 10.2 | 0.824 | [NAME] (NM_133704, intron 1 of 6) | [NAME] (NM_133704, intron 1 of 6) | 676 | NM_133704 | 317717 | Mm.259164 | NM_133704 | ENSMUSG00000034473 | Sec22a | 1810005C06Rik|Sec22l2 | SEC22 vesicle trafficking protein homologe A (S. cerevisiae)
chr18-56 | chr18 | 25691136 | 25691338 | + | 10.2 | 0.7 | intron (NM_001174074, intron 3 of 11) | intron (NM_001174074, intron 3 of 11) | 221247 | NM_133195 | 108013 | Mm.266435 | NM_001146292 | ENSMUSG00000024268 | Celf4 | A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik | CUGBP, [NAME]-like family member 4
chr8-862 | chr8 | 110911179 | 110911381 | + | 10.2 | 0.812 | Intergenic | Intergenic | -327264 | NM_007496 | 11906 | Mm.477670 | NM_007496 | ENSMUSG00000038872 | Zfhx3 | A230102L03Rik|Atbf1|KIAA4228|WBP9|mKIAA4228 | zinc finger homeobox 3
chr6-291 | chr6 | 115488886 | 115489088 | + | 10.2 | 0.6 | Intergenic | Intergenic | -5735 | NM_199033 | 381802 | Mm.291208 | NM_199033 | ENSMUSG00000042389 | Tsen2 | AU067695|MGC69703 | tRNA splicing endonuclease 2 homolog (S. cerevisiae)
chr15-119 | chr15 | 99889317 | 99889519 | + | 10.2 | 0.688 | [NAME] (NM_001159361, intron 1 of 37) | [NAME] (NM_001159361, intron 1 of 37) | 20323 | NM_001159361 | 239667 | Mm.243658 | NM_001159361 | ENSMUSG00000023026 | Dip2b | 4932422C22|AI317237|AI854602|KIAA1463|mKIAA1463 | DIP2 disco-interacting protein 2 homolog B (Drosophila)
chr3-111 | chr3 | 130780485 | 130780687 | + | 10.2 | 0.778 | Intergenic | Intergenic | -32803 | NM_010703 | 16842 | Mm.255219 | NM_010703 | ENSMUSG00000027985 | Lef1 | 3000002B05|AI451430|Lef-1 | lymphoid enhancer binding factor 1
chr18-53 | chr18 | 14213461 | 14213663 | + | 10.2 | 0.941 | Intergenic | Intergenic | -82320 | NM_145492 | 225207 | Mm.40325 | NM_145492 | ENSMUSG00000024420 | [NAME] | B930086A16Rik|Evi3|Znf521 | zinc finger protein 521
chr6-365 | chr6 | 125403522 | 125403724 | + | 10.2 | 0.722 | Intergenic | B4A|SINE|B4 | 41150 | NM_007657 | 12527 | Mm.404614 | NM_007657 | ENSMUSG00000030342 | Cd9 | Tspan29 | CD9 antigen
chr16-88 | chr16 | 32638707 | 32638909 | + | 10.2 | 0.565 | Intergenic | Intergenic | -5921 | NM_016788 | 51789 | Mm.251115 | NM_001110147 | ENSMUSG00000022791 | Tnk2 | ACK1|AW552477|Ack|Cdgip|MGC37479|Pyk1 | [NAME], non-receptor, 2
chr14-106 | chr14 | 7724491 | 7724693 | + | 10.2 | 0.722 | Intergenic | Intergenic | 135371 | NM_001164727 | 100038847 | Mm.483857 | NM_001164727 | ENSMUSG00000072735 | Gm10406 | ENSMUSG00000072735 | predicted gene 10406
chr14-122 | chr14 | 55705045 | 55705247 | + | 10.2 | 0.7 | [NAME] (NM_001039198, intron 1 of 9) | ID_B1|SINE|B4 | 5739 | NM_001039198 | 239102 | Mm.441113 | NM_001039198 | ENSMUSG00000040721 | Zfhx2 | ZFH-5 | zinc finger homeobox 2
chr12-706 | chr12 | 90650110 | 90650312 | + | 10.2 | 0.765 | [NAME] (NM_172544, intron 8 of 19) | ORR1A4-int|LTR|MaLR | -400685 | NM_001252074 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr16-92 | chr16 | 36041096 | 36041298 | + | 10.2 | 0.619 | promoter-TSS (NM_027113) | promoter-TSS (NM_027113) | -79 | NM_027113 | 69544 | [NAME] | NM_027113 | ENSMUSG00000034379 | Wdr5b | 2310009C03Rik|AI606931 | WD repeat domain 5B
chr12-772 | chr12 | 103445264 | 103445466 | + | 10.2 | 0.824 | [NAME], intron 2 of 16) | [NAME], intron 2 of 16) | -75919 | NM_177620 | 217835 | Mm.24145 | NM_001161365 | ENSMUSG00000044456 | Rin3 | 6430500K07|C86933 | [NAME] and Rab interactor 3
chr14-126 | chr14 | 63379893 | 63380095 | + | 10.2 | 0.765 | promoter-TSS (NM_008715) | promoter-TSS (NM_008715) | -45 | NM_008715 | 18130 | Mm.441110 | NM_008715 | ENSMUSG00000035161 | Ints6 | 2900075H24Rik|AI480962|DICE1|Ddx26|HDB|Notch2l | integrator complex subunit 6
chr11-276 | chr11 | 59043937 | 59044139 | + | 10.2 | 0.619 | Intergenic | Intergenic | -2269 | NM_007476 | 11840 | Mm.371546 | NM_001130408 | ENSMUSG00000048076 | Arf1 | - | ADP-ribosylation factor 1
chr4-253 | chr4 | 102161349 | 102161551 | + | 10.2 | 0.933 | intron (NM_001177983, intron 2 of 5) | intron (NM_001177983, intron 2 of 5) | -81215 | NM_001177980 | 18578 | [NAME] | NM_001177980 | ENSMUSG00000028525 | Pde4b | Dpde4|R74983|dunce | phosphodiesterase 4B, cAMP specific
chr12-745 | chr12 | 101245969 | 101246171 | + | 10.2 | 0.545 | intron (NM_146037, intron 2 of 2) | intron (NM_146037, intron 2 of 2) | 43361 | NM_146037 | 217826 | Mm.312335 | NM_001164426 | ENSMUSG00000045404 | Kcnk13 | BB085247|F730021E22Rik|Gm1570|Gm1685|MGC31053 | potassium channel, subfamily K, member 13
chr8-798 | chr8 | 91509778 | 91509980 | + | 10.2 | 0.579 | Intergenic | Intergenic | 58182 | NM_021390 | 58198 | Mm.214361 | NM_021390 | ENSMUSG00000031665 | Sall1 | Msal-3 | sal-like 1 (Drosophila)
chr5-113 | chr5 | 31459931 | 31460133 | + | 10.2 | 0.833 | exon (NM_027901, exon 19 of 19) | exon (NM_027901, exon 19 of 19) | -3417 | NM_008622 | 17527 | Mm.435472 | NM_008622 | ENSMUSG00000090262 | Mpv17 | Tg.Mpv17 | MpV17 mitochondrial inner membrane protein
chr3-69 | chr3 | 69526570 | 69526772 | + | 10.2 | 0.632 | intron (NM_133787, intron 2 of 15) | intron (NM_133787, intron 2 of 15) | 694 | NM_133787 | 97112 | Mm.439485 | NM_133787 | ENSMUSG00000027787 | Nmd3 | C87860 | NMD3 homolog (S. cerevisiae)
chr4-299 | chr4 | 115535968 | 115536170 | + | 10.2 | 0.706 | [NAME] (NM_021461, intron 5 of 12) | [NAME] (NM_021461, intron 5 of 12) | -20936 | NM_001039124 | 654462 | Mm.388913 | NM_001039124 | ENSMUSG00000073774 | [NAME] | Kino|L5 | kinocilin
[NAME] | chr14 | 123050730 | 123050932 | + | 10.2 | 0.778 | intron (NM_144844, intron 9 of 23) | B3A|SINE|B2 | 117281 | NM_144844 | 110821 | [NAME] | NM_144844 | ENSMUSG00000041650 | Pcca | C79630 | propionyl-Coenzyme A carboxylase, alpha polypeptide
chr1-202 | chr1 | 94240517 | 94240719 | + | 10.2 | 0.7 | Intergenic | Intergenic | 129717 | NM_024197 | 67273 | Mm.248778 | NM_024197 | ENSMUSG00000026260 | Ndufa10 | 2900053E13Rik | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10
chr8-693 | chr8 | 23916405 | 23916607 | + | 10.2 | 0.667 | promoter-TSS (NM_001122820) | promoter-TSS (NM_001122820) | -380 | NM_001122820 | 64933 | Mm.390023 | NM_001122820 | ENSMUSG00000031539 | Ap3m2 | 5830445E16Rik|AP-3B | adaptor-related protein complex 3, mu 2 subunit
chr8-795 | chr8 | 91147052 | 91147254 | + | 10.2 | 0.65 | Intergenic | Intergenic | 12874 | NM_027840 | 71607 | Mm.270607 | NM_027840 | ENSMUSG00000031662 | Snx20 | 9130017C17Rik | sorting nexin 20
chr8-817 | chr8 | 96916011 | 96916213 | + | 10.2 | 0.722 | exon (NM_022331, exon 6 of 8) | exon (NM_022331, exon 6 of 8) | 5712 | NM_022331 | 64209 | Mm.29151 | NM_022331 | ENSMUSG00000031770 | Herpud1 | Herp|Mifl|SUP | homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
[NAME] | chr10 | 107552357 | 107552559 | + | 10.2 | 0.8 | Intergenic | Intergenic | -46998 | NM_027892 | 17931 | Mm.489819 | NM_027892 | ENSMUSG00000019907 | Ppp1r12a | 1200015F06Rik|5730577I22Rik|AA792106|AV099298|D10Ertd625e|MGC159084|Mypt1 | protein phosphatase 1, regulatory (inhibitor) subunit 12A
chr2-83 | chr2 | 28497355 | 28497557 | + | 10.2 | 0.647 | intron (NM_022887, intron 1 of 22) | intron (NM_022887, intron 1 of 22) | 693 | NM_022887 | 64930 | Mm.224354 | NM_022887 | ENSMUSG00000026812 | [NAME] | hamartin|mKIAA0243 | tuberous sclerosis 1
chr10-146 | chr10 | 126517868 | 126518070 | + | 10.2 | 0.684 | [NAME] 18) | [NAME] 18) | 2006 | NM_001033263 | 216439 | Mm.336761 | NM_001033263 | ENSMUSG00000025422 | Agap2 | Centg1|mKIAA0167 | ArfGAP with GTPase domain, ankyrin repeat and PH domain 2
chr2-151 | chr2 | 167726312 | 167726514 | + | 10.2 | 0.611 | Intergenic | Intergenic | -31414 | NM_011201 | 19246 | Mm.277916 | NM_011201 | ENSMUSG00000027540 | Ptpn1 | PTP-1B|PTP-HA2|PTP1B | protein tyrosine phosphatase, non-receptor type 1
chr8-1018 | chr8 | 129617900 | 129618102 | + | 10.2 | 0.824 | intron (NM_033620, intron 1 of 24) | intron (NM_033620, intron 1 of 24) | 30045 | NM_001122850 | 93742 | Mm.299254 | NM_001013580 | ENSMUSG00000025812 | Pard3 | AA960621|AI256638|ASIP|D8Ertd580e|PAR-3|Par3|Pard3a | par-3 (partitioning defective 3) homolog (C. elegans)
chr2-76 | chr2 | 13193171 | 13193373 | + | 10.2 | 0.7 | promoter-TSS (NM_009105) | promoter-TSS (NM_009105) | -367 | NM_009105 | 20163 | Mm.905 | NM_009105 | ENSMUSG00000026727 | Rsu1 | RsuI|rsp-1 | [NAME] suppressor protein 1
chr6-433 | chr6 | 140768237 | 140768439 | + | 10.2 | 0.684 | Intergenic | Intergenic | 195519 | NM_009637 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr6-359 | chr6 | 125203913 | 125204115 | + | 10.2 | 0.812 | Intergenic | MTE-int|LTR|MaLR | -11529 | NR_015527 | 73870 | Mm.440681 | NR_015527 |  | 4930417O13Rik | - | RIKEN cDNA 4930417O13 gene
chr17-171 | chr17 | 27845208 | 27845410 | + | 10.2 | 0.933 | intron (NM_011861, intron 9 of 9) | intron (NM_011861, intron 9 of 9) | 20587 | NM_013891 | 30051 | Mm.26768 | NM_013891 | ENSMUSG00000024215 | Spdef | PDEF|Pse | SAM pointed domain containing ets transcription factor
chr12-757 | chr12 | 101812455 | 101812657 | + | 10.2 | 0.938 | [NAME] (NM_153587, intron 12 of 17) | [NAME] (NM_153587, intron 12 of 17) | -53524 | NM_001033213 | 104718 | Mm.295441 | NM_001033213 | ENSMUSG00000033530 | Ttc7b | AA408451|Ttc7l1 | tetratricopeptide repeat domain 7B
chr3-124 | chr3 | 137285226 | 137285428 | + | 10.2 | 0.682 | Intergenic | Intergenic | -1309 | NM_030143 | 73284 | Mm.250841 | NM_030143 | ENSMUSG00000046818 | Ddit4l | 1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1 | DNA-damage-inducible transcript 4-like
chr12-719 | chr12 | 95333134 | 95333336 | + | 10.2 | 0.867 | Intergenic | L1Md_T|LINE|L1 | -1597201 | NM_201518 | 399558 | Mm.341948 | NM_201518 | ENSMUSG00000047414 | Flrt2 | KIAA0405 | fibronectin leucine rich transmembrane protein 2
[NAME] | chr11 | 95994916 | 95995118 | + | 10.2 | 0.684 | promoter-TSS (NM_172799) | promoter-TSS (NM_172799) | -83 | NM_172799 | 237930 | Mm.249912 | NM_172799 | ENSMUSG00000038756 | [NAME] | 4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59 | tubulin tyrosine ligase-like family, member 6
chr8-786 | chr8 | 90486357 | 90486559 | + | 10.2 | 0.737 | Intergenic | CpG-14334 | -2964 | NM_033327 | 94187 | [NAME] | NM_033327 | ENSMUSG00000045333 | Zfp423 | Ebfaz|Roaz|Zfp104|Znf423|ataxia1|mKIAA0760|nur12 | zinc finger protein 423
chr8-617 | chr8 | 8746082 | 8746284 | + | 10.2 | 0.824 | Intergenic | B4A|SINE|B4 | -55646 | NM_176849 | 234023 | Mm.251655 | NM_176849 | ENSMUSG00000040459 | Arglu1 | 9430010O03Rik|C130008N12 | arginine and glutamate rich 1
chr8-643 | chr8 | 12374840 | 12375042 | + | 10.2 | 0.667 | Intergenic | Intergenic | -10830 | NR_027975 | 434280 | Mm.447484 | NM_001013812 |  | [NAME] | EG434280 | predicted gene 5607
chr15-66 | chr15 | 39962730 | 39962932 | + | 10.2 | 0.933 | Intergenic | Intergenic | -3080 | NM_001256056 | 328531 | Mm.60703 | NM_001256056 |  | 9330182O14Rik | - | RIKEN cDNA 9330182O14 gene
chr12-958 | chr12 | 112157867 | 112158069 | + | 10.2 | 0.722 | [NAME], intron 6 of 20) | [NAME], intron 6 of 20) | 30494 | NM_001081057 | 104859 | Mm.35583 | NM_175336 | ENSMUSG00000021275 | Tecpr2 | 4930573I19Rik|AI604920|mKIAA0297 | tectonin beta-propeller repeat containing 2
chr11-307 | chr11 | 78844114 | 78844316 | + | 10.2 | 0.7 | non-coding (NR_045873, exon 4 of 6) | non-coding (NR_045873, exon 4 of 6) | 7116 | NR_045873 | 790910 | Mm.440410 | NR_045873 |  | Gm11201 | [NAME] | predicted gene 11201
chr4-227 | chr4 | 23268426 | 23268628 | + | 10.2 | 0.867 | Intergenic | Intergenic | -853014 | NM_008899 | 18992 | [NAME] | NM_008899 | ENSMUSG00000052621 | Pou3f2 | 9430075J19Rik|A230098E07Rik|Brn-2|Brn2|OTF-7|Otf7|oct-7 | POU domain, class 3, transcription factor 2
chr7-179 | chr7 | 117441165 | 117441367 | + | 10.2 | 0.722 | Intergenic | Intergenic | 76049 | [NAME] | 20947 | Mm.334144 | [NAME] | ENSMUSG00000031015 | Swap70 | 70kDa|AV235546 | [NAME]
chr9-103 | chr9 | 10738608 | 10738810 | + | 10.2 | 0.812 | [NAME] (NM_001033359, intron 1 of 20) | L1_Mus2|LINE|L1 | 166017 | NM_001033359 | 244682 | Mm.334958 | NM_001033359 | ENSMUSG00000039488 | Cntn5 | 6720426O10Rik|A830025P08Rik|Gm507|NB-2 | contactin 5
chr17-207 | chr17 | 31888397 | 31888599 | + | 10.2 | 0.824 | Intergenic | Intergenic | 73608 | NM_013501 | 12954 | Mm.1228 | NM_013501 | ENSMUSG00000024041 | Cryaa | AI323437|Acry-1|Crya-1|Crya1|DAcry-1|lop18 | [NAME], alpha A
chr4-382 | chr4 | 147726281 | 147726483 | + | 10.2 | 0.833 | Intergenic | Intergenic | -64308 | NM_001083342 | 242748 | Mm.33873 | NM_001083342 | ENSMUSG00000041544 | Ptchd2 | G630052C06Rik|RNDEu-2 | patched domain containing 2
chr18-50 | chr18 | 9940856 | 9941058 | + | 10.2 | 0.737 | Intergenic | L1_Mus1|LINE|L1 | -17221 | NM_153552 | 225160 | Mm.219648 | NM_153552 | ENSMUSG00000024287 | Thoc1 | 3110002N20Rik|AW107452|MGC28284|NMP-84 | THO complex 1
chr19-126 | chr19 | 53768608 | 53768810 | + | 10.2 | 0.875 | [NAME] (NM_001170847, intron 1 of 13) | ORR1E|LTR|MaLR | 16913 | NM_001170847 | 73713 | Mm.313695 | NM_001170847 | ENSMUSG00000043639 | Rbm20 | 1110018J23Rik|2010003H22Rik|AI646761 | RNA binding motif protein 20
chr8-746 | chr8 | 83376937 | 83377139 | + | 10.2 | 0.933 | [NAME] (NM_021356, intron 1 of 9) | [NAME] (NM_021356, intron 1 of 9) | 27340 | NM_021356 | 14388 | Mm.277409 | NM_021356 | ENSMUSG00000031714 | Gab1 | AA408973|AW107238 | growth factor receptor bound protein 2-associated protein 1
chr8-888 | chr8 | 116963303 | 116963505 | + | 10.2 | 0.684 | promoter-TSS (NM_019573) | promoter-TSS (NM_019573) | -148 | NM_019573 | 80707 | Mm.440420 | NM_019573 | ENSMUSG00000004637 | Wwox | 5330426P09Rik|9030416C10Rik|WOX1 | WW domain-containing oxidoreductase
chr8-870 | chr8 | 112133832 | 112134034 | + | 10.2 | 0.765 | Intergenic | RSINE1|SINE|B4 | -1360 | NM_020046 | 56749 | Mm.23894 | NM_020046 | ENSMUSG00000031730 | Dhodh | 2810417D19Rik|AI834883 | dihydroorotate dehydrogenase
chr6-300 | chr6 | 116808553 | 116808755 | + | 10.2 | 0.7 | Intergenic | Intergenic | -141878 | NM_178768 | 319776 | Mm.133120 | NM_178768 | ENSMUSG00000048108 | Tmem72 | C230095G01Rik | [NAME] 72
chr4-370 | chr4 | 135803487 | 135803689 | + | 10.2 | 0.684 | promoter-TSS (NM_011542) | promoter-TSS (NM_011542) | -284 | NM_011542 | 21401 | Mm.112 | NM_011542 | ENSMUSG00000001604 | Tcea3 | S-II|SII-K1 | transcription elongation factor A (SII), 3
chr10-116 | chr10 | 79303779 | 79303981 | + | 10.2 | 0.571 | Intergenic | Intergenic | -13470 | NM_001077363 | 19205 | Mm.265610 | NM_001077363 | ENSMUSG00000006498 | Ptbp1 | AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB | polypyrimidine tract binding protein 1
chr9-130 | chr9 | 53253990 | 53254192 | + | 10.2 | 0.789 | intron (NM_007499, intron 58 of 63) | intron (NM_007499, intron 58 of 63) | 40700 | NM_029247 | 75311 | Mm.26078 | NM_029247 | ENSMUSG00000005131 | 4930550C14Rik | AU017961 | RIKEN cDNA 4930550C14 gene
chr8-819 | chr8 | 97106243 | 97106445 | + | 10.2 | 0.789 | [NAME], intron 6 of 7) | [NAME], intron 6 of 7) | 19282 | NM_028221 | 102122 | Mm.250425 | NM_028221 | ENSMUSG00000031774 | Fam192a | 1700001O11Rik|2310065K24Rik|AI596259|Nip30 | family with sequence similarity 192, member A
chr17-231 | chr17 | 56119106 | 56119308 | + | 10.2 | 0.65 | Intergenic | Intergenic | -6727 | NM_183178 | 240121 | Mm.270660 | NM_183178 | ENSMUSG00000011589 | Fsd1 | MGC58341 | fibronectin type 3 and SPRY domain-containing protein
chr2-129 | chr2 | 135149706 | 135149908 | + | 10.2 | 0.789 | [NAME] (NM_001145830, intron 13 of 31) | [NAME] (NM_001145830, intron 13 of 31) | -108455 | [NAME] | 78805 | Mm.78702 | [NAME] |  | 4930545L23Rik | - | RIKEN cDNA 4930545L23 gene
chr9-115 | chr9 | 36575315 | 36575517 | + | 10.2 | 0.812 | promoter-TSS (NM_008408) | promoter-TSS (NM_008408) | -253 | NM_008408 | 16430 | Mm.2863 | NM_008408 | ENSMUSG00000032116 | Stt3a | AA408947|BB081708|Itm1 | STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
chr8-719 | chr8 | 72273882 | 72274084 | + | 10.2 | 0.882 | promoter-TSS (NM_001200023) | promoter-TSS (NM_001200023) | -122 | NM_001200023 | 620419 | Mm.460423 | NM_001200023 | ENSMUSG00000092260 | Zfp963 | - | zinc finger protein 963
chr6-458 | chr6 | 145431123 | 145431325 | + | 10.2 | 0.667 | Intergenic | Intergenic | -47779 | NM_028742 | 74071 | Mm.441497 | XM_003689397 | ENSMUSG00000054966 | Ifltd1 | 4933403M22Rik|AI482300|Lmna-rs1|Lmna1 | intermediate filament tail domain containing 1
chr4-320 | chr4 | 117522268 | 117522470 | + | 10.2 | 0.632 | intron (NM_008135, intron 2 of 13) | intron (NM_008135, intron 2 of 13) | 14506 | NM_008135 | 14664 | Mm.244549 | NM_008135 | ENSMUSG00000028542 | Slc6a9 | Glyt-1|Glyt1 | solute carrier family 6 (neurotransmitter transporter, glycine), member 9
chr6-352 | chr6 | 124903444 | 124903646 | + | 10.2 | 0.722 | Intergenic | Intergenic | 11870 | NM_012003 | 26894 | Mm.244536 | NM_001164089 | ENSMUSG00000030127 | Cops7a | D6Ertd35e | COP9 (constitutive photomorphogenic) homolog, subunit 7a (Arabidopsis thaliana)
chr4-346 | chr4 | 125653899 | 125654101 | + | 10.2 | 0.765 | Intergenic | B4A|SINE|B4 | -47903 | NR_045561 | 12986 | Mm.271701 | NM_001252651 | ENSMUSG00000028859 | Csf3r | Cd114|Csfgr|G-CSF-R|G-CSFR|MGC141472|MGC141473 | colony stimulating factor 3 receptor (granulocyte)
chr6-297 | chr6 | 115856540 | 115856742 | + | 10.2 | 0.867 | [NAME] (NM_001167763, intron 17 of 28) | [NAME] (NM_001167763, intron 17 of 28) | -25304 | NM_145383 | 212541 | Mm.406156 | NM_145383 | ENSMUSG00000030324 | Rho | MGC21585|MGC25387|Noerg1|Opn2|Ops|RP4 | rhodopsin
chr12-959 | chr12 | 112158416 | 112158618 | + | 10.2 | 0.55 | [NAME], intron 6 of 20) | [NAME], intron 6 of 20) | 31043 | NM_001081057 | 104859 | Mm.35583 | NM_175336 | ENSMUSG00000021275 | Tecpr2 | 4930573I19Rik|AI604920|mKIAA0297 | tectonin beta-propeller repeat containing 2
chr7-164 | chr7 | 72209613 | 72209815 | + | 10.2 | 0.824 | intron (NM_183087, intron 1 of 9) | intron (NM_183087, intron 1 of 9) | 91700 | NM_183087 | 70638 | Mm.441986 | NM_183087 | ENSMUSG00000030518 | Fam189a1 | 5730507A09Rik|AW047451 | family with sequence similarity 189, member [NAME]
chr7-171 | chr7 | 89870468 | 89870670 | + | 10.2 | 0.933 | intron (NM_175317, intron 15 of 19) | intron (NM_175317, intron 15 of 19) | 33585 | NR_046004 | 77800 | Mm.447286 | NR_046004 |  | 4933406J10Rik | A930009F24Rik | RIKEN cDNA 4933406J10 gene
chr12-914 | chr12 | 110612498 | 110612700 | + | 10.2 | 0.591 | Intergenic | Intergenic | -78434 | NR_033813 | 13386 | Mm.157069 | NM_001190703 | ENSMUSG00000040856 | Dlk1 | AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1 | delta-like 1 homolog (Drosophila)
chr19-78 | chr19 | 5477408 | 5477610 | + | 10.2 | 0.765 | intron (NM_021474, intron 4 of 10) | intron (NM_021474, intron 4 of 10) | 2774 | NM_001164352 | 58859 | Mm.276367 | NM_001164352 | ENSMUSG00000024909 | Efemp2 | 0610011K11Rik|Fbln4|MBP1 | epidermal growth factor-containing fibulin-like extracellular matrix protein 2
chr6-268 | chr6 | 90734629 | 90734831 | + | 10.2 | 0.667 | intron (NM_001134384, intron 1 of 13) | intron (NM_001134384, intron 1 of 13) | 25387 | NM_001134384 | 232227 | Mm.473438 | NM_182784 | ENSMUSG00000034312 | Iqsec1 | AW561907|BC026481|BRAG2|D6Ertd349e|KIAA0763|cI-43|mKIAA0763 | IQ motif and Sec7 domain 1
chr4-271 | chr4 | 107055530 | 107055732 | + | 10.2 | 0.545 | intron (NM_028355, intron 7 of 17) | intron (NM_028355, intron 7 of 17) | 15242 | NM_028355 | 72787 | Mm.28478 | NM_028355 | ENSMUSG00000028614 | Tmem48 | 2810475A17Rik|AI450313|NDC1 | [NAME] 48
chr8-679 | chr8 | 16611073 | 16611275 | + | 10.2 | 0.875 | [NAME] intron 5 of 69) | [NAME] intron 5 of 69) | -442336 | NR_037214 | 100526464 |  | NR_037214 |  | Mir3106 | mmu-mir-3106 | microRNA 3106
chr13-85 | chr13 | 32893603 | 32893805 | + | 10.2 | 0.824 | promoter-TSS (NM_030215) | promoter-TSS (NM_030215) | -195 | NM_030215 | 78903 | Mm.286680 | NM_030215 | ENSMUSG00000021400 | Wrnip1 | 4833444L21Rik|WHIP|Wrnip | [NAME] helicase interacting protein 1
chr12-708 | chr12 | 91846539 | 91846741 | + | 10.2 | 0.8 | Intergenic | Intergenic | 130238 | NM_010050 | 13371 | Mm.408815 | NM_010050 | ENSMUSG00000007682 | Dio2 | 5DII|AI324267|DIOII | deiodinase, iodothyronine, type II
chr10-99 | chr10 | 59522766 | 59522968 | + | 10.2 | 0.65 | intron (NM_001199187, intron 7 of 10) | intron (NM_001199187, intron 7 of 10) | -46138 | NM_052994 | 94214 | Mm.153429 | NM_052994 | ENSMUSG00000058297 | Spock2 | AA407235|Gcap26|mKIAA0275 | sparc/osteonectin, cwcv and [NAME]-like domains proteoglycan 2
chr8-821 | chr8 | 97295424 | 97295626 | + | 10.2 | 0.706 | promoter-TSS (NM_009142) | promoter-TSS (NM_009142) | -555 | NM_009142 | 20312 | Mm.103711 | NM_009142 | ENSMUSG00000031778 | Cx3cl1 | AB030188|ABCD-3|AI848747|CX3C|Cxc3|D8Bwg0439e|Scyd1 | chemokine (C-X3-C motif) ligand 1
chr3-87 | chr3 | 97413633 | 97413835 | + | 10.2 | 0.824 | intron (NM_026539, intron 1 of 22) | intron (NM_026539, intron 1 of 22) | 379 | NM_026539 | 68058 | Mm.41447 | NM_026539 | ENSMUSG00000028089 | Chd1l | 4432404A22Rik|Alc1|Snf2p | chromodomain helicase DNA binding protein 1-like
chr4-312 | chr4 | 116933469 | 116933671 | + | 10.2 | 0.933 | [NAME] (NM_026837, intron 1 of 2) | [NAME] (NM_026837, intron 1 of 2) | 8976 | NM_026837 | 68777 | Mm.331805 | NM_026837 | ENSMUSG00000048772 | Tmem53 | 1110038M16Rik|1500001P22Rik|1700012A05Rik | [NAME] 53
chr10-93 | chr10 | 43375582 | 43375784 | + | 10.2 | 0.632 | Intergenic | Intergenic | 62450 | NR_033558 | 414125 | Mm.244305 | NR_033558 |  | F830002L21Rik | F930017D23Rik | RIKEN cDNA F830002L21 gene
chr11-323 | chr11 | 96001688 | 96001890 | + | 10.2 | 0.882 | exon (NM_172799, exon 7 of 15) | exon (NM_172799, exon 7 of 15) | 6689 | NM_172799 | 237930 | Mm.249912 | NM_172799 | ENSMUSG00000038756 | [NAME] | 4932418K24Rik|D11Moh43e|D11Moh44e|t8130b59 | tubulin tyrosine ligase-like family, member 6
chr9-143 | chr9 | 65675538 | 65675740 | + | 10.2 | 0.812 | promoter-TSS (NM_172536) | promoter-TSS (NM_172536) | -268 | NM_172536 | 214812 | Mm.139231 | NM_172536 | ENSMUSG00000040524 | Zfp609 | 9830165N24|BC016271|Znf609|mKIAA0295 | zinc finger protein 609
chr1-212 | chr1 | 134496595 | 134496797 | + | 10.2 | 0.722 | exon (NM_001160318, exon 20 of 27) | exon (NM_001160318, exon 20 of 27) | 42739 | NM_001160316 | 269116 | Mm.326702 | NM_001160316 | ENSMUSG00000026442 | Nfasc | AA387016|D430023G06Rik|NF|mKIAA0756 | neurofascin
chr8-848 | chr8 | 108078204 | 108078406 | + | 10.2 | 0.765 | [NAME] (NM_013477, intron 1 of 7) | [NAME] (NM_013477, intron 1 of 7) | 11635 | NM_013477 | 11972 | Mm.17708 | NM_013477 | ENSMUSG00000013160 | [NAME] | AI267038|Ac39|Atp6d|P39|VATX|Vma6 | ATPase, H+ transporting, lysosomal V0 subunit D1
chr7-144 | chr7 | 29745380 | 29745582 | + | 10.2 | 0.684 | [NAME] (NM_021895, intron 1 of 20) | [NAME] (NM_021895, intron 1 of 20) | 1818 | NM_021895 | 60595 | Mm.81144 | NM_021895 | ENSMUSG00000054808 | Actn4 | C77391|MGC102374 | actinin alpha 4
chr9-164 | chr9 | 120555003 | 120555205 | + | 10.2 | 0.875 | Intergenic | B3A|SINE|B2 | 74470 | NM_025974 | 67115 | Mm.289810 | NM_025974 | ENSMUSG00000025794 | Rpl14 | 3100001N19Rik|AA407502|AL022816|CAG-ISL-7|CTG-B33|L14 | ribosomal protein L14
chr8-890 | chr8 | 119031320 | 119031522 | + | 10.2 | 0.684 | exon (NM_029297, exon 2 of 4) | exon (NM_029297, exon 2 of 4) | 2506 | NM_029297 | 75465 | Mm.23114 | NM_029297 | ENSMUSG00000034467 | Dynlrb2 | 1700009A04Rik|DNLC2B|Dncl2b | [NAME] chain roadblock-type 2
chr8-627 | chr8 | 11204792 | 11204994 | + | 10.2 | 0.824 | [NAME], intron 49 of 51) | B4A|SINE|B4 | 107933 | NM_009931 | 12826 | Mm.738 | NM_009931 | ENSMUSG00000031502 | Col4a1 | Bru|Col4a-1|Del(8)44H|Raw|Svc | collagen, type IV, alpha 1
chr2-141 | chr2 | 158039299 | 158039501 | + | 10.2 | 0.812 | [NAME] intron 4 of 13) | L2c|LINE|L2 | 15558 | NM_001131021 | 228846 | Mm.187574 | NM_001131021 | ENSMUSG00000037813 | D630003M21Rik | - | RIKEN cDNA D630003M21 gene
chr17-183 | chr17 | 29415042 | 29415244 | + | 10.2 | 0.812 | intron (NM_030561, intron 2 of 8) | intron (NM_030561, intron 2 of 8) | 9410 | NM_030561 | 80748 | Mm.290116 | NM_030561 | ENSMUSG00000052712 | BC004004 | 2400006G15Rik|MGC7550 | cDNA sequence BC004004
chr12-699 | chr12 | 89713678 | 89713880 | + | 10.2 | 0.812 | Intergenic | Intergenic | -98012 | NR_045888 | 71818 |  | NR_045888 |  | 3200001D21Rik | - | RIKEN cDNA 3200001D21 gene
chr16-67 | chr16 | 4880366 | 4880568 | + | 10.2 | 0.778 | promoter-TSS (NM_145359) | promoter-TSS (NM_145359) | -616 | NM_145359 | 207740 | Mm.268895 | NM_145359 | ENSMUSG00000039568 | Fam100a | 1500031H01Rik|BC013706 | family with sequence similarity 100, member A
chr11-331 | chr11 | 97828108 | 97828310 | + | 10.2 | 0.882 | intron (NM_001163608, intron 2 of 13) | intron (NM_001163608, intron 2 of 13) | 19551 | NM_028199 | 72324 | Mm.482750 | NM_001163608 | ENSMUSG00000017417 | Plxdc1 | 2410003I07Rik|AI848450|MGC130377|Tem7 | plexin domain containing 1
chr8-616 | chr8 | 8491788 | 8491990 | + | 10.2 | 0.812 | Intergenic | RSINE1|SINE|B4 | 168884 | NM_010111 | 13642 | Mm.209813 | NM_010111 | ENSMUSG00000001300 | Efnb2 | ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 | ephrin B2
[NAME] | chr11 | 106860663 | 106860865 | + | 10.2 | 0.765 | promoter-TSS (NM_010655) | promoter-TSS (NM_010655) | 75 | NM_010655 | 16647 | Mm.423000 | NM_010655 | ENSMUSG00000018362 | Kpna2 | 2410044B12Rik|IPOA1|MGC91246|PTAC58|Rch1 | [NAME] (importin) alpha 2
chr19-87 | chr19 | 7046104 | 7046306 | + | 10.2 | 0.727 | Intergenic | Intergenic | -1963 | NM_008874 | 18797 | Mm.273204 | NM_008874 | ENSMUSG00000024960 | [NAME] | KIAA4098|mKIAA4098 | phospholipase C, beta 3
chr2-150 | chr2 | 167231267 | 167231469 | + | 10.2 | 0.778 | Intergenic | Intergenic | -15853 | NM_148929 | 77031 | [NAME] | NM_148929 | ENSMUSG00000039463 | Slc9a8 | 1200006P13Rik|6430709P13Rik|AI182282|NHE8 | solute carrier family 9 (sodium/hydrogen exchanger), member 8
chr3-102 | chr3 | 121061909 | 121062111 | + | 10.2 | 0.812 | [NAME] 3 of 3) | [NAME] 3 of 3) | 67275 | NM_024178 | 66789 | [NAME] | NM_024178 | ENSMUSG00000039887 | Alg14 | 5430428G01Rik|AI854024 | asparagine-linked glycosylation 14 homolog (yeast)
chr8-957 | chr8 | 124461960 | 124462162 | + | 10.2 | 0.632 | intron (NM_007608, intron 2 of 6) | B4|SINE|B4 | 6751 | NM_007608 | 12352 | Mm.116761 | NM_007608 | ENSMUSG00000025317 | Car5a | CAV|Ca5a|Car5 | carbonic anhydrase 5a, mitochondrial
chr17-151 | chr17 | 25289422 | 25289624 | + | 10.2 | 0.765 | [NAME], intron 14 of 24) | [NAME], intron 14 of 24) | -9883 | NM_001079929 | 207209 | Mm.207121 | NM_001079929 | ENSMUSG00000059562 | Ccdc154 | Ccdc157|Gm317 | coiled-coil domain containing 154
chr13-94 | chr13 | 51646192 | 51646394 | + | 10.2 | 0.737 | [NAME] (NM_009167, intron 1 of 11) | B4A|SINE|B4 | 16160 | NM_009167 | 20418 | Mm.131870 | NM_009167 | ENSMUSG00000021448 | Shc3 | MGC124163|N-Shc|Rai|ShcC | src homology 2 domain-containing transforming protein C3
chr11-278 | chr11 | 59100909 | 59101111 | + | 10.2 | 0.65 | intron (NM_009522, intron 1 of 3) | intron (NM_009522, intron 1 of 3) | 3243 | NM_009522 | 22416 | Mm.1367 | NM_009522 | ENSMUSG00000009900 | Wnt3a | Wnt-3a|vt | wingless-related MMTV integration site 3A
chr8-649 | chr8 | 12647081 | 12647283 | + | 10.2 | 0.824 | intron (NM_198031, intron 11 of 21) | B3A|SINE|B2 | 24918 | NM_198031 | 259279 | [NAME] | NM_198031 | ENSMUSG00000000759 | Tubgcp3 | GCP3|Spc98p | tubulin, gamma complex associated protein 3
chr7-133 | chr7 | 19674497 | 19674699 | + | 10.2 | 0.7 | [NAME] (NM_001190491, intron 9 of 12) | MTC|LTR|MaLR | 2421 | NR_037282 | 100526504 |  | NR_037282 |  | Mir3100 | mmu-mir-3100 | microRNA 3100
chr19-117 | chr19 | 45820955 | 45821157 | + | 10.2 | 0.632 | Intergenic | Intergenic | 2997 | NM_008723 | 18150 | Mm.1406 | NM_008723 | ENSMUSG00000056209 | Npm3 | Nub1 | nucleoplasmin 3
chr17-173 | chr17 | 28451951 | 28452153 | + | 10.2 | 0.867 | [NAME] 8) | [NAME] 8) | 1577 | NM_001163820 | 72775 | Mm.201859 | NM_001163819 | ENSMUSG00000007570 | Fance | 2810451D06Rik|AI415634|AW209126 | Fanconi anemia, complementation group E
chr18-70 | chr18 | 61291493 | 61291695 | + | 10.2 | 0.75 | TTS (NM_001037859) | TTS (NM_001037859) | 26368 | NM_001037859 | 12978 | Mm.22574 | NM_007779 | ENSMUSG00000024621 | [NAME] | AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fms|M-CSF-R|M-CSFR | colony stimulating factor 1 receptor
chr18-80 | chr18 | 75654465 | 75654667 | + | 10.2 | 0.875 | [NAME] (NM_201354, intron 9 of 11) | [NAME] (NM_201354, intron 9 of 11) | -19733 | NR_045879 | 100038353 | Mm.440724 | NR_045879 |  | Gm10532 | ENSMUSG00000073534 | predicted gene 10532
chr7-157 | chr7 | 52273019 | 52273221 | + | 10.2 | 0.778 | promoter-TSS (NM_009101) | promoter-TSS (NM_009101) | -257 | NM_009101 | 20130 | Mm.389894 | NM_009101 | ENSMUSG00000038387 | [NAME] | AI573426|MGC129444|MGC129445 | Harvey rat sarcoma oncogene, subgroup R
chr12-659 | chr12 | 36880703 | 36880905 | + | 10.2 | 0.667 | [NAME] (NM_025840, intron 1 of 11) | RMER10A|LTR|ERVL | 2608 | NM_025840 | 66912 | Mm.288669 | NM_025840 | ENSMUSG00000020547 | Bzw2 | 1110001I24Rik|Bdm2|HSPC028|MGC7203 | basic leucine zipper and [NAME] domains 2
chr16-76 | chr16 | 15863424 | 15863626 | + | 10.2 | 0.789 | promoter-TSS (NM_029354) | promoter-TSS (NM_029354) | -110 | NM_029354 | 72083 | Mm.22351 | NM_029354 | ENSMUSG00000022671 | Mzt2 | 2410018G20Rik|2610001E06Rik|Fam128|Fam128b | mitotic spindle organizing protein 2
chr10-109 | chr10 | 66921566 | 66921768 | + | 10.2 | 0.714 | Intergenic | Intergenic | -78950 | NM_010118 | 13654 | Mm.290421 | NM_010118 | ENSMUSG00000037868 | Egr2 | [NAME] | early growth response 2
chr4-336 | chr4 | 119613988 | 119614190 | + | 10.2 | 0.706 | [NAME] (NM_010657, intron 1 of 8) | [NAME] (NM_010657, intron 1 of 8) | 126806 | NM_010657 | 16656 | Mm.488325 | NM_010657 | ENSMUSG00000028634 | Hivep3 | 2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3 | human immunodeficiency virus type I enhancer binding protein 3
chr12-742 | chr12 | 101161560 | 101161762 | + | 10.2 | 0.824 | intron (NM_028354, intron 13 of 15) | intron (NM_028354, intron 13 of 15) | 38936 | NM_028354 | 104884 | Mm.488658 | NM_028354 | ENSMUSG00000021177 | Tdp1 | 2810481F14Rik|4921509N21Rik|AI838772|AW493413|E430034L06Rik|MLZ-501|SCAN1 | tyrosyl-DNA phosphodiesterase 1
chr15-77 | chr15 | 75655748 | 75655950 | + | 10.2 | 0.688 | [NAME] (NM_172121, intron 3 of 11) | [NAME] (NM_172121, intron 3 of 11) | 16489 | NM_172121 | 223642 | Mm.209800 | NM_172121 | ENSMUSG00000075600 | Zc3h3 | BC049953|Kiaa0150|Smicl|Zc3hdc3 | zinc finger CCCH type containing 3
chr13-77 | chr13 | 12895575 | 12895777 | + | 10.2 | 0.867 | Intergenic | Lx|LINE|L1 | -3330 | NM_011118 | 18812 | Mm.457984 | NM_011118 | ENSMUSG00000056457 | Prl2c3 | MRP-2|MRP-3|Mrpplf3|PLF-2|PLF-3|Plf2|Prl2c4|mrp/plf3 | [NAME] family 2, subfamily c, member 3
chr4-352 | chr4 | 128867448 | 128867650 | + | 10.2 | 0.706 | promoter-TSS (NM_029036) | promoter-TSS (NM_029036) | 510 | NM_134151 | 107271 | Mm.145488 | NM_134151 | ENSMUSG00000028811 | Yars | AL024047|AU018965 | tyrosyl-tRNA synthetase
chr6-283 | chr6 | 114004260 | 114004462 | + | 10.2 | 0.789 | Intergenic | Intergenic | -12287 | NM_009723 | 11941 | Mm.443564 | NM_001036684 | ENSMUSG00000030302 | Atp2b2 | D6Abb2e|PMCA2|Tmy|dfw|jog|wms|wri | ATPase, Ca++ transporting, plasma membrane 2
chr14-160 | chr14 | 100081325 | 100081527 | + | 10.2 | 0.765 | Intergenic | Intergenic | 383516 | NM_009769 | 12224 | Mm.30262 | NM_009769 | ENSMUSG00000005148 | Klf5 | 4930520J07Rik|Bteb2|CKLF|IKLF | Kruppel-like factor 5
chr6-425 | chr6 | 137440301 | 137440503 | + | 10.2 | 0.722 | [NAME] (NM_007945, intron 18 of 21) | [NAME] (NM_007945, intron 18 of 21) | 81160 | NM_001164403 | 19277 | Mm.446785 | [NAME] | ENSMUSG00000030223 | Ptpro | D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O | protein tyrosine phosphatase, receptor type, O
chr12-813 | chr12 | 105940528 | 105940730 | + | 10.2 | 0.619 | exon (NM_148948, exon 21 of 27) | exon (NM_148948, exon 21 of 27) | 49533 | NM_148948 | 192119 | Mm.21135 | NM_148948 | ENSMUSG00000041415 | Dicer1 | 1110006F08Rik|D12Ertd7e|mKIAA0928 | dicer 1, ribonuclease type III
chr2-126 | chr2 | 131042023 | 131042225 | + | 10.2 | 0.765 | Intergenic | Intergenic | 5948 | NM_027129 | 69596 | Mm.2937 | NM_027129 | ENSMUSG00000068264 | 2310035K24Rik | 0610038L13Rik|AW060727|Ap5s1 | RIKEN cDNA 2310035K24 gene
chr6-341 | chr6 | 124729479 | 124729681 | + | 10.2 | 0.667 | intron (NM_013588, intron 1 of 7) | intron (NM_013588, intron 1 of 7) | 156 | NM_013588 | 16977 | Mm.3207 | NM_013588 | ENSMUSG00000030125 | Lrrc23 | 4921537K05Rik|B7|Lrpb7 | leucine rich repeat containing 23
chr19-106 | chr19 | 41964778 | 41964980 | + | 10.2 | 0.579 | intron (NM_199447, intron 4 of 33) | intron (NM_199447, intron 4 of 33) | 5764 | NM_199447 | 107094 | Mm.276044 | NM_199447 | ENSMUSG00000035049 | Rrp12 | AA408556|AA536972|mKIAA0690 | ribosomal RNA processing 12 homolog (S. cerevisiae)
chr5-132 | chr5 | 100570605 | 100570807 | + | 10.2 | 0.722 | [NAME] (NM_182841, intron 1 of 7) | [NAME] (NM_182841, intron 1 of 7) | 18121 | NM_182841 | 231503 | Mm.99790 | NM_182841 | ENSMUSG00000050640 | Tmem150c | - | [NAME] 150C
chr4-243 | chr4 | 94749023 | 94749225 | + | 10.2 | 0.684 | Intergenic | Intergenic | -30211 | NM_010591 | 16476 | Mm.275071 | NM_010591 | ENSMUSG00000052684 | Jun | AP-1|Junc|c-jun | Jun oncogene
chr4-229 | chr4 | 41222387 | 41222589 | + | 10.2 | 0.708 | promoter-TSS (NM_026872) | promoter-TSS (NM_026872) | -320 | NM_026872 | 68926 | Mm.41864 | NM_026872 | ENSMUSG00000028433 | Ubap2 | 1190005K07Rik|AA408600|AU045235|UBAP-2|mKIAA1491 | ubiquitin-associated protein 2
chr8-813 | chr8 | 95181291 | 95181493 | + | 10.2 | 0.632 | Intergenic | Intergenic | -16909 | NM_022428 | 64379 | Mm.137247 | NM_022428 | ENSMUSG00000031738 | Irx6 | MGC161201 | Iroquois related homeobox 6 (Drosophila)
chr9-150 | chr9 | 95423056 | 95423258 | + | 10.2 | 0.882 | Intergenic | B4A|SINE|B4 | -10742 | NM_001114977 | 67958 | Mm.392755 | NM_001114977 | ENSMUSG00000032407 | 2610101N10Rik | AU023006|Sr140|U2surp | RIKEN cDNA 2610101N10 gene
chr7-150 | chr7 | 39155415 | 39155617 | + | 10.2 | 0.778 | Intergenic | L1Md_F2|LINE|L1 | -99149 | NM_025390 | 66161 | Mm.22284 | NM_025390 | ENSMUSG00000030423 | Pop4 | 1110023P21Rik|Rpp29 | processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)
[NAME] | chr11 | 76270026 | 76270228 | + | 10.2 | 0.684 | exon (NM_198895, exon 11 of 23) | exon (NM_198895, exon 11 of 23) | 49458 | NM_019818 | 56322 | Mm.18803 | NM_019818 | ENSMUSG00000020843 | Timm22 | 2610511O07Rik|Tim22 | translocase of inner mitochondrial membrane 22 homolog (yeast)
chr5-156 | chr5 | 124324536 | 124324738 | + | 10.2 | 0.824 | Intergenic | Intergenic | 5392 | NM_175520 | 243270 | Mm.33362 | NM_175520 | ENSMUSG00000049241 | Gpr81 | Hcar1 | G protein-coupled receptor 81
chr5-149 | chr5 | 121129427 | 121129629 | + | 10.2 | 0.778 | TTS (NM_008052) | TTS (NM_008052) | 30697 | NM_013832 | 19415 | Mm.41209 | NM_013832 | ENSMUSG00000029602 | Rasal1 | MRASAL | RAS protein activator like 1 (GAP1 like)
chr15-89 | chr15 | 79513760 | 79513962 | + | 10.2 | 0.765 | [NAME] (NM_028792, intron 1 of 3) | [NAME] (NM_028792, intron 1 of 3) | 4441 | NM_028792 | 74158 | Mm.323393 | NM_028792 | ENSMUSG00000022426 | [NAME] | 1300006C06Rik|MGC101975|MGC6306|mKIAA0063 | [NAME] domain containing 1
chr16-94 | chr16 | 44612779 | 44612981 | + | 10.2 | 0.824 | Intergenic | Intergenic | -53897 | NM_172506 | 117606 | [NAME] | NM_172506 | ENSMUSG00000022687 | Boc | 4732455C11|DKFZp434L072|mFLJ00376 | biregional cell adhesion molecule-related/down-regulated by oncogenes (Cdon) binding protein
chr8-867 | chr8 | 111872589 | 111872791 | + | 10.2 | 0.867 | Intergenic | Intergenic | -7882 | NR_002928 | 384864 | Mm.390083 | NR_002928 |  | Gm1943 | - | WD repeat domain 70 pseudogene
chr8-935 | chr8 | 123344627 | 123344829 | + | 10.2 | 0.812 | Intergenic | Intergenic | 84452 | NM_008320 | 15900 | Mm.334861 | NM_008320 | ENSMUSG00000041515 | Irf8 | AI893568|ICSBP|IRF-8|Icsbp1|Myls | interferon regulatory factor 8
chr2-148 | chr2 | 165969763 | 165969965 | + | 10.2 | 0.579 | intron (NM_028072, intron 1 of 20) | intron (NM_028072, intron 1 of 20) | 10921 | NM_001252578 | 72043 | Mm.1011 | NM_001252578 | ENSMUSG00000006800 | Sulf2 | 2010004N24Rik|AU020235|MSulf-2|mKIAA1247 | sulfatase 2
chr14-139 | chr14 | 98879085 | 98879287 | + | 10.2 | 0.789 | Intergenic | Intergenic | -310424 | NM_007826 | 13134 | Mm.320593 | NM_001038610 | ENSMUSG00000055639 | Dach1 | AI182278|Dac|Dach|E130112M23Rik | dachshund 1 (Drosophila)
chr6-271 | chr6 | 112958523 | 112958725 | + | 10.2 | 0.733 | Intergenic | Intergenic | -37697 | NM_008188 | 14911 | [NAME] | NM_008188 | ENSMUSG00000030264 | Thumpd3 | AW556087|Gt(ROSA)26asSor|Gtrosa26as | THUMP domain containing 3
chr6-416 | chr6 | 136357638 | 136357840 | + | 10.2 | 0.667 | [NAME] (NM_001201390, intron 1 of 1) | L1VL4|LINE|L1 | 6351 | NM_001201390 | 100502936 | [NAME] | NM_001201390 |  | E330021D16Rik | C85549 | RIKEN cDNA E330021D16 gene
chr1-207 | chr1 | 120546853 | 120547055 | + | 10.2 | 0.706 | [NAME] (NM_023755, intron 2 of 14) | [NAME] (NM_023755, intron 2 of 14) | 22432 | NM_023755 | 81879 | Mm.24621 | NM_023755 | ENSMUSG00000026380 | Tfcp2l1 | 1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1 | transcription factor CP2-like 1
chr17-227 | chr17 | 47977722 | 47977924 | + | 10.2 | 0.867 | Intergenic | U1|snRNA|snRNA | -6183 | NM_001109973 | 17240 | Mm.329100 | NM_001109973 | ENSMUSG00000032717 | [NAME] | [NAME] | MyoD family inhibitor
chr3-64 | chr3 | 33817802 | 33818004 | + | 10.2 | 0.882 | Intergenic | Intergenic | -74671 | NM_026222 | 51938 | Mm.474546 | NM_026222 | ENSMUSG00000027676 | Ccdc39 | 4921507O14Rik|AI447426|AI844750|D3Ertd789e | coiled-coil domain containing 39
chr11-389 | chr11 | 121249596 | 121249798 | + | 10.2 | 0.833 | promoter-TSS (NM_139147) | promoter-TSS (NM_139147) | -132 | NM_139147 | 217371 | Mm.281639 | NM_139147 | ENSMUSG00000025170 | Rab40b | SEC4L|rar | Rab40b, member RAS oncogene family
chrX-46 | chrX | 148237629 | 148237831 | + | 10.2 | 0.789 | promoter-TSS (NM_021523) | promoter-TSS (NM_021523) | -95 | NM_021523 | 59026 | Mm.488413 | NM_021523 | ENSMUSG00000025261 | Huwe1 | 5430439H10Rik|AU041296|Arf-bp1|C430014N20Rik|C80292|Gm1718|Ib772|LASU1|Mule|Ureb1 | HECT, UBA and WWE domain containing 1
chr3-70 | chr3 | 71587235 | 71587437 | + | 10.2 | 0.684 | Intergenic | L1VL1|LINE|L1 | -976123 | NR_040556 | 625901 | Mm.366028 | NR_040556 |  | Gm6634 | EG625901 | predicted gene 6634
chr6-258 | chr6 | 28164682 | 28164884 | + | 10.2 | 0.619 | Intergenic | LTR16B|LTR|ERVL | 46818 | NM_001081678 | 627049 | [NAME] | NM_001081678 | ENSMUSG00000039841 | Zfp800 | AA407452|Znf800 | zinc finger protein 800
chr7-141 | chr7 | 29166316 | 29166518 | + | 10.2 | 0.778 | Intergenic | Intergenic | -2170 | NM_011756 | 22695 | [NAME] | NM_011756 | ENSMUSG00000044786 | Zfp36 | Gos24|Nup475|TIS11D|TISII|Tis11|Ttp|Zfp-36 | zinc finger protein 36
chr8-863 | chr8 | 111108871 | 111109073 | + | 10.2 | 0.933 | Intergenic | Intergenic | -129572 | NM_007496 | 11906 | Mm.477670 | NM_007496 | ENSMUSG00000038872 | Zfhx3 | A230102L03Rik|Atbf1|KIAA4228|WBP9|mKIAA4228 | zinc finger homeobox 3
chr4-344 | chr4 | 125457624 | 125457826 | + | 10.2 | 0.765 | Intergenic | Intergenic | 141829 | NR_015560 | 72395 | [NAME] | NR_015560 |  | 2610028E06Rik | BB043107 | RIKEN cDNA 2610028E06 gene
chr2-73 | chr2 | 6113232 | 6113434 | + | 10.2 | 0.619 | promoter-TSS (NR_040333) | promoter-TSS (NR_040333) | -964 | NR_040333 | 320132 | Mm.445891 | NR_040333 |  | A230108P19Rik | - | RIKEN cDNA A230108P19 gene
chr4-272 | chr4 | 107125845 | 107126047 | + | 10.2 | 0.667 | [NAME] (NM_147221, intron 2 of 10) | [NAME] (NM_147221, intron 2 of 10) | 18622 | NM_147221 | 230587 | Mm.331757 | NM_147221 | ENSMUSG00000034762 | Glis1 | Gli5|Gli6|GliH1 | GLIS family zinc finger 1
chr3-72 | chr3 | 84442878 | 84443080 | + | 10.2 | 0.632 | Intergenic | Intergenic | -27135 | NM_177260 | 320782 | Mm.107370 | NM_177260 | ENSMUSG00000056498 | Tmem154 | 9930117H01Rik | [NAME] 154
chr15-69 | chr15 | 64295532 | 64295734 | + | 10.2 | 0.737 | Intergenic | Intergenic | -81152 | NM_010026 | 13196 | Mm.277236 | NM_010026 | ENSMUSG00000022377 | Asap1 | AV239055|DEF-1|Ddef1|PAP|mKIAA1249.|s19 | ArfGAP with SH3 domain, ankyrin repeat and PH domain1
chr3-123 | chr3 | 135299628 | 135299830 | + | 10.2 | 0.65 | intron (NM_008689, intron 6 of 24) | intron (NM_008689, intron 6 of 24) | 54782 | NM_008689 | 18033 | Mm.256765 | NM_008689 | ENSMUSG00000028163 | Nfkb1 | NF-KB1|NF-kappaB|NF-kappaB1|p105|p50|p50/p105 | nuclear factor of kappa light polypeptide gene enhancer in B cells 1, p105
chr12-855 | chr12 | 107695151 | 107695353 | + | 10.2 | 0.667 | Intergenic | ORR1D2|LTR|MaLR | -9376 | NR_036593 | 76639 | Mm.375609 | NR_036593 |  | 1700121N20Rik | - | RIKEN cDNA 1700121N20 gene
chr12-752 | chr12 | 101724490 | 101724692 | + | 10.2 | 0.938 | [NAME] (NM_001033213, intron 3 of 19) | B3A|SINE|B2 | 34441 | NM_001033213 | 104718 | Mm.295441 | NM_001033213 | ENSMUSG00000033530 | Ttc7b | AA408451|Ttc7l1 | tetratricopeptide repeat domain 7B
chr14-151 | chr14 | 99535495 | 99535697 | + | 10.2 | 0.938 | intron (NM_029320, intron 6 of 17) | intron (NM_029320, intron 6 of 17) | -36607 | NM_028315 | 72662 | Mm.163339 | NM_028315 | ENSMUSG00000033166 | Dis3 | 2810028N01Rik | DIS3 mitotic control homolog (S. cerevisiae)
chr12-716 | chr12 | 93252461 | 93252663 | + | 10.2 | 0.706 | Intergenic | Intergenic | -164965 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
chr4-256 | chr4 | 104581464 | 104581666 | + | 10.2 | 0.875 | Intergenic | B1_Mus1|SINE|Alu | -4496 | NM_001162980 | 242594 | Mm.65181 | NM_001162980 | ENSMUSG00000078612 | 1700024P16Rik | C1orf168|Gm620|MGC169347 | RIKEN cDNA 1700024P16 gene
chr11-267 | chr11 | 40546537 | 40546739 | + | 10.2 | 0.778 | promoter-TSS (NM_026023) | promoter-TSS (NM_026023) | 301 | NM_013552 | 15366 | Mm.116997 | NM_013552 | ENSMUSG00000020330 | [NAME] | AA386826|CD168|Rhamm | hyaluronan mediated motility receptor (RHAMM)
chr6-436 | chr6 | 142689094 | 142689296 | + | 10.2 | 0.8 | Intergenic | RMER19B|LTR|ERVK | -16011 | NM_009908 | 12764 | Mm.3820 | NM_009908 | ENSMUSG00000030282 | Cmas | AW208911|CMPNeu5Ac|D6Bwg0250e | [NAME] acid synthetase
chr12-1040 | chr12 | 114569896 | 114570098 | + | 10.2 | 0.762 | Intergenic | Intergenic | 145883 | NM_153776 | 69195 | Mm.313244 | NM_153776 | ENSMUSG00000049036 | Tmem121 | 2410008J05Rik|Hole | [NAME] 121
chr12-701 | chr12 | 89760928 | 89761130 | + | 10.2 | 0.833 | Intergenic | RMER19B|LTR|ERVK | -145262 | NR_045888 | 71818 |  | NR_045888 |  | 3200001D21Rik | - | RIKEN cDNA 3200001D21 gene
chr19-99 | chr19 | 24472425 | 24472627 | + | 10.2 | 0.875 | [NAME] (NM_008846, intron 3 of 14) | Lx2|LINE|L1 | 79438 | NM_026520 | 68034 | Mm.440181 | NM_026520 | ENSMUSG00000074922 | Fam122a | 2410124L17Rik|2900009I07Rik|ENSMUSG00000051082|Gm9849 | family with sequence similarity 122, member A
chr8-902 | chr8 | 120519620 | 120519822 | + | 10.2 | 0.7 | Intergenic | MTB|LTR|MaLR | -193892 | NM_026758 | 68533 | Mm.181836 | NM_026758 | ENSMUSG00000031843 | Mphosph6 | 1110001M01Rik|AA536809|C86426 | M phase phosphoprotein 6
chr12-662 | chr12 | 77052402 | 77052604 | + | 10.2 | 0.778 | [NAME] (NM_001005510, intron 44 of 115) | [NAME] (NM_001005510, intron 44 of 115) | 42413 | NR_039560 | 100628610 |  | NR_039560 |  | Mir5101 | mmu-mir-5101|mu-mir-5101 | microRNA 5101
chr4-287 | chr4 | 109093832 | 109094034 | + | 10.2 | 0.722 | exon (NM_153392, exon 3 of 18) | exon (NM_153392, exon 3 of 18) | 5681 | NM_001145948 | 230603 | Mm.33091 | NM_001145948 | ENSMUSG00000028555 | Ttc39a | 4922503N01Rik|MGC37599 | tetratricopeptide repeat domain 39A
chr11-364 | chr11 | 115183733 | 115183935 | + | 10.2 | 0.778 | promoter-TSS (NM_176847) | promoter-TSS (NM_176847) | -602 | NM_176847 | 16470 | Mm.451539 | NM_176847 | ENSMUSG00000045288 | [NAME] | Sans|js | Usher syndrome 1G homolog (human)
chr3-108 | chr3 | 130271326 | 130271528 | + | 10.2 | 0.778 | [NAME] (NM_198711, intron 27 of 34) | [NAME] (NM_198711, intron 27 of 34) | -48939 | NM_001163587 | 71760 | Mm.29125 | NM_001163587 | ENSMUSG00000019232 | Agxt2l1 | 1300019H02Rik|AI195447 | alanine-glyoxylate aminotransferase 2-like 1
chr11-255 | chr11 | 3828308 | 3828510 | + | 10.2 | 0.737 | [NAME] (NM_001130458, intron 2 of 9) | [NAME] (NM_001130458, intron 2 of 9) | 3555 | NM_001130459 | 21452 | Mm.20948 | NM_001130458 | ENSMUSG00000020432 | Tcn2 | AW208754|Tcn-2 | transcobalamin 2
chr10-134 | chr10 | 85802615 | 85802817 | + | 10.2 | 0.812 | [NAME] (NM_011595, intron 2 of 4) | [NAME] (NM_011595, intron 2 of 4) | 39559 | NM_011595 | 21859 | Mm.4871 | NM_011595 | [NAME] | Timp3 | Timp-3 | tissue inhibitor of metalloproteinase 3
chr17-175 | chr17 | 28665157 | 28665359 | + | 10.2 | 0.632 | Intergenic | Intergenic | -2548 | NM_026290 | 67645 | Mm.46170 | NM_026290 | ENSMUSG00000024223 | 4930511I11Rik | AV041658|Armc12 | RIKEN cDNA 4930511I11 gene
chr1-224 | chr1 | 167390961 | 167391163 | + | 10.2 | 0.737 | promoter-TSS (NM_028759) | promoter-TSS (NM_028759) | -277 | NM_027430 | 70456 | Mm.450001 | NM_027430 | ENSMUSG00000026568 | Brp44 | 0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|ESTM43 | brain protein 44
chr9-147 | chr9 | 75604896 | 75605098 | + | 10.2 | 0.75 | Intergenic | Lx3C|LINE|L1 | -18175 | NM_007555 | 12160 | Mm.428950 | NM_007555 | ENSMUSG00000032179 | Bmp5 | AU023399|se | bone morphogenetic protein 5
chr2-86 | chr2 | 29474643 | 29474845 | + | 10.2 | 0.714 | promoter-TSS (NM_001039086) | promoter-TSS (NM_001039086) | -496 | NM_054050 | 107746 | Mm.298274 | NM_001039086 | ENSMUSG00000039844 | Rapgef1 | 4932418O06Rik|C3G|Grf2 | Rap guanine nucleotide exchange factor (GEF) 1
chr18-57 | chr18 | 25710970 | 25711172 | + | 10.2 | 0.737 | intron (NM_001146294, intron 2 of 12) | intron (NM_001146294, intron 2 of 12) | 201413 | NM_133195 | 108013 | Mm.266435 | NM_001146292 | ENSMUSG00000024268 | Celf4 | A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik | CUGBP, [NAME]-like family member 4
chr8-637 | chr8 | 11943052 | 11943254 | + | 10.2 | 0.8 | Intergenic | Intergenic | 102632 | NM_029326 | 75528 | Mm.440342 | NM_029326 | ENSMUSG00000031512 | 1700018L24Rik | TEX29 | RIKEN cDNA 1700018L24 gene
chr8-689 | chr8 | 23347810 | 23348012 | + | 10.2 | 0.824 | [NAME] (NM_001205253, intron 1 of 3) | [NAME] (NM_001205253, intron 1 of 3) | 10136 | NM_019576 | 56229 | Mm.32067 | NM_001205253 | ENSMUSG00000031480 | Thsd1 | 4833423O18Rik|Tmtsp | thrombospondin, type I, domain 1
chr9-128 | chr9 | 46825768 | 46825970 | + | 10.2 | 0.765 | Intergenic | RMER17A2|LTR|ERVK | 19045 | NM_001243258 | 215467 | Mm.246572 | NM_001243258 |  | Gm4791 | D930036J05 | predicted gene 4791
chr2-118 | chr2 | 104970682 | 104970884 | + | 10.2 | 0.765 | [NAME] (NM_144783, intron 1 of 9) | [NAME] (NM_144783, intron 1 of 9) | 4097 | NM_144783 | 22431 | Mm.389339 | NM_144783 | ENSMUSG00000016458 | Wt1 | D630046I19Rik|Wt-1 | Wilms tumor 1 homolog
[NAME] | chr11 | 120478233 | 120478435 | + | 10.2 | 0.722 | intron (NM_024229, intron 1 of 13) | intron (NM_024229, intron 1 of 13) | 870 | NM_024229 | 68671 | Mm.21439 | NM_024229 | ENSMUSG00000025137 | Pcyt2 | 1110033E03Rik|ET | phosphate cytidylyltransferase 2, ethanolamine
chr4-260 | chr4 | 105256772 | 105256974 | + | 10.2 | 0.824 | Intergenic | Intergenic | 426921 | NM_080555 | 67916 | Mm.348326 | NM_080555 | ENSMUSG00000028517 | Ppap2b | 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|Ppab2b | phosphatidic acid phosphatase type 2B
chr16-101 | chr16 | 92786502 | 92786704 | + | 10.2 | 0.381 | intron (NM_001111022, intron 2 of 6) | intron (NM_001111022, intron 2 of 6) | 39708 | NM_001111021 | 12394 | Mm.470227 | NM_001111021 | ENSMUSG00000022952 | Runx1 | AI462102|AML1|Cbfa2|Pebp2a2|Pebpa2b | runt related transcription factor 1
chr4-280 | chr4 | 108029181 | 108029383 | + | 10.2 | 0.722 | Intergenic | Intergenic | 26672 | NM_001099303 | 545667 | Mm.380025 | NM_001099303 | ENSMUSG00000059816 | Fam159a | OTTMUSG00000008243 | family with sequence similarity 159, member A
chr10-85 | chr10 | 4096361 | 4096563 | + | 10.2 | 0.895 | Intergenic | L1_Mus1|LINE|L1 | -327679 | NM_001161822 | 56533 | Mm.44606 | NM_001161822 | ENSMUSG00000019775 | [NAME] | 6430507P11Rik|Rgsz2 | regulator of G-protein signaling 17
chr8-981 | chr8 | 126043350 | 126043552 | + | 10.2 | 0.55 | [NAME] intron 1 of 10) | [NAME] intron 1 of 10) | 716 | NM_018855 | 104346 | Mm.117265 | NM_018855 | ENSMUSG00000040220 | Gas8 | Gas11 | growth arrest specific 8
chr8-801 | chr8 | 91918451 | 91918653 | + | 10.2 | 0.824 | Intergenic | Intergenic | -350491 | NM_021390 | 58198 | Mm.214361 | NM_021390 | ENSMUSG00000031665 | Sall1 | Msal-3 | sal-like 1 (Drosophila)
chr10-143 | chr10 | 119603307 | 119603509 | + | 10.2 | 0.684 | [NAME] (NM_028679, intron 7 of 11) | [NAME] (NM_028679, intron 7 of 11) | 35185 | NM_028679 | 73914 | Mm.146194 | NM_028679 | ENSMUSG00000020227 | Irak3 | 4833428C18Rik|AI563835|IRAK-M | interleukin-1 receptor-associated kinase 3
[NAME] | chr14 | 99431962 | 99432164 | + | 10.2 | 0.722 | Intergenic | Intergenic | 13292 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
[NAME] | chr14 | 25733895 | 25734097 | + | 10.2 | 0.812 | Intergenic | B4A|SINE|B4 | 228731 | NR_045718 | 75862 | Mm.109191 | NR_045718 |  | 4930572O13Rik | - | RIKEN cDNA 4930572O13 gene
chr5-169 | chr5 | 139324331 | 139324533 | + | 10.2 | 0.565 | Intergenic | Intergenic | 28398 | NM_001195128 | 384244 | Mm.485002 | NM_001195128 |  | Gm5294 | EG384244 | predicted gene 5294
chr2-154 | chr2 | 172922939 | 172923141 | + | 10.2 | 0.619 | [NAME] (NM_001081387, intron 9 of 10) | [NAME] (NM_001081387, intron 9 of 10) | 21986 | NM_001081387 | 664799 | Mm.389396 | NM_001081387 | ENSMUSG00000070495 | Ctcfl | Boris|OTTMUSG00000016680 | CCCTC-binding factor (zinc finger protein)-like
chr5-110 | chr5 | 30536885 | 30537087 | + | 10.2 | 0.765 | Intergenic | Intergenic | -4724 | NM_001014394 | 381628 | Mm.291148 | NM_001014394 | ENSMUSG00000067642 | Gpr113 | Gm1041|Pgr23 | G protein-coupled receptor 113
chr7-188 | chr7 | 134159092 | 134159294 | + | 10.2 | 0.722 | intron (NM_030240, intron 2 of 2) | intron (NM_030240, intron 2 of 2) | -1085 | [NAME] | 78388 | Mm.228797 | [NAME] | ENSMUSG00000030681 | [NAME] | 2310009M24Rik|LRP|VAULT1 | major vault protein
chr8-726 | chr8 | 74069035 | 74069237 | + | 10.2 | 0.765 | exon (NM_028617, exon 4 of 9) | exon (NM_028617, exon 4 of 9) | 2307 | [NAME] | 73711 | Mm.307770 | [NAME] | ENSMUSG00000031813 | Fam125a | 1110012M11Rik|MGC99951 | family with sequence similarity 125, member A
chr8-776 | chr8 | 89040189 | 89040391 | + | 10.2 | 0.667 | intron (NM_172912, intron 22 of 28) | B2_Mm2|SINE|B2 | 50199 | NM_172912 | 244562 | Mm.67485 | NM_172912 | ENSMUSG00000036872 | Abcc12 | 4930467B22Rik|MRP9 | ATP-binding cassette, sub-family C (CFTR/MRP), member 12
chr15-97 | chr15 | 81896080 | 81896282 | + | 10.2 | 0.722 | exon (NM_001166475, exon 2 of 2) | exon (NM_001166475, exon 2 of 2) | -4366 | NM_028897 | 74369 | Mm.289351 | NM_028897 | ENSMUSG00000068117 | Mei1 | 4932408F18Rik|mei1 | meiosis defective 1
chr4-389 | chr4 | 153675835 | 153676037 | + | 10.2 | 0.632 | Intergenic | Intergenic | -1932 | NM_001112744 | 230972 | Mm.38481 | NM_001112744 | ENSMUSG00000029032 | Arhgef16 | - | Rho guanine nucleotide exchange factor (GEF) 16
chr11-294 | chr11 | 71967110 | 71967312 | + | 10.2 | 0.875 | TTS (NM_028963) | TTS (NM_028963) | -17820 | NM_001081641 | 327958 | Mm.351793 | NM_001024927 | ENSMUSG00000040543 | Pitpnm3 | A330068P14Rik|AI848332|Gm880 | PITPNM family member 3
chr9-139 | chr9 | 62955440 | 62955642 | + | 10.2 | 0.867 | Intergenic | MTD|LTR|MaLR | 39246 | NM_172446 | 207667 | Mm.447200 | NM_001163755 | ENSMUSG00000022245 | Skor1 | AV273001|C230094B15Rik|Corl1|Lbxcor1 | SKI family transcriptional corepressor 1
chr13-80 | chr13 | 21599769 | 21599971 | + | 10.2 | 0.812 | Intergenic | MTD|LTR|MaLR | -1477 | NR_026798 | 100038371 | Mm.133328 | NR_026798 |  | Zfp389 | ENSMUSG00000075041|OTTMUSG00000018077 | zinc finger protein 389
chr17-236 | chr17 | 71086826 | 71087028 | + | 10.2 | 0.667 | intron (NM_177639, intron 6 of 11) | intron (NM_177639, intron 6 of 11) | 109190 | NM_001164077 | 21815 | Mm.101034 | NM_001164074 | ENSMUSG00000047407 | Tgif1 | AA959811|AI462167|Tgif | TGFB-induced factor homeobox 1
chr10-120 | chr10 | 79785249 | 79785451 | + | 10.2 | 0.579 | intron (NM_008793, intron 13 of 14) | intron (NM_008793, intron 13 of 14) | -2057 | NM_025521 | 66374 | Mm.383824 | NM_025521 | ENSMUSG00000020133 | 2310011J03Rik | AI452186|AW545358 | RIKEN cDNA 2310011J03 gene
chr8-905 | chr8 | 121588948 | 121589150 | + | 10.2 | 0.7 | [NAME] (NM_019707, intron 6 of 13) | [NAME] (NM_019707, intron 6 of 13) | -279389 | NM_024219 | 68196 | Mm.358714 | NM_024219 | ENSMUSG00000031839 | Hsbp1 | 0610007A03Rik|AA408769|Hsp25 | heat shock factor binding protein 1
chr18-75 | chr18 | 65848682 | 65848884 | + | 10.2 | 0.867 | 3' UTR (NM_207255, exon 6 of 6) | 3' UTR (NM_207255, exon 6 of 6) | -9139 | NM_177028 | 319888 | Mm.183576 | NM_177028 | ENSMUSG00000046610 | 5330437I02Rik | Acyl3 | RIKEN cDNA 5330437I02 gene
chr14-141 | chr14 | 99072036 | 99072238 | + | 10.2 | 0.867 | Intergenic | L1ME3|LINE|L1 | 373218 | NM_175245 | 76789 | Mm.486342 | NM_175245 | ENSMUSG00000033186 | Mzt1 | 2410129H14Rik|AI120158|Mozart1 | mitotic spindle organizing protein 1
chr9-123 | chr9 | 44288115 | 44288317 | + | 10.2 | 0.692 | Intergenic | Intergenic | -19003 | NM_030256 | 80288 | Mm.370270 | NM_030256 | ENSMUSG00000063382 | Bcl9l | B9L|BC003321|BCL9-2|DLNB11|MGC7014 | B cell CLL/lymphoma 9-like
chr7-195 | chr7 | 146769450 | 146769652 | + | 10.2 | 0.632 | promoter-TSS (NR_027857) | promoter-TSS (NR_027857) | -855 | NR_027857 | 14912 | Mm.476889 | NM_183248 | ENSMUSG00000041309 | Nkx6-2 | Gtx|Nkx6.2 | NK6 homeobox 2
chr5-106 | chr5 | 23293264 | 23293466 | + | 10.2 | 0.895 | promoter-TSS (NM_177323) | promoter-TSS (NM_177323) | -197 | NM_177323 | 72772 | Mm.490188 | NM_177323 | ENSMUSG00000028999 | [NAME] | 1500019C06Rik|2810450M21Rik|MGC183656|Rint-1 | RAD50 interactor 1
chr5-126 | chr5 | 75214944 | 75215146 | + | 10.2 | 0.867 | Intergenic | Intergenic | -116117 | NM_001159577 | 16924 | Mm.440403 | NM_001159577 | ENSMUSG00000029228 | Lnx1 | [NAME] | ligand of numb-protein X 1
chr9-146 | chr9 | 75173458 | 75173660 | + | 10.2 | 0.722 | intron (NM_010313, intron 2 of 11) | intron (NM_010313, intron 2 of 11) | 11510 | NM_138719 | 14697 | Mm.17604 | NM_010313 | ENSMUSG00000032192 | Gnb5 | GBS|Gbeta5|flr | guanine nucleotide binding protein (G protein), beta 5
chr11-274 | chr11 | 55746875 | 55747077 | + | 10.2 | 0.737 | Intergenic | Intergenic | 107513 | NM_153079 | 216749 | Mm.213205 | NM_153079 | ENSMUSG00000037393 | Nmur2 | Nmu2r | neuromedin U receptor 2
chr8-706 | chr8 | 26831685 | 26831887 | + | 10.2 | 0.684 | [NAME] intron 4 of 6) | [NAME] intron 4 of 6) | 1266 | NM_028000 | 71910 | Mm.385055 | NM_028000 | ENSMUSG00000031570 | Ppapdc1b | 1810019D05Rik|2310022A04Rik|AW045471|Ppapdc1 | phosphatidic acid phosphatase type 2 domain containing 1B
chr11-313 | chr11 | 84329884 | 84330086 | + | 10.2 | 0.824 | Intergenic | Intergenic | -2982 | NM_019816 | 56321 | Mm.257482 | NM_019816 | ENSMUSG00000018697 | [NAME] | 4933415H02Rik|5830465M17Rik|Che-1|MGC35916|Trb | apoptosis antagonizing transcription factor
[NAME] | chr14 | 61253183 | 61253385 | + | 10.2 | 0.833 | promoter-TSS (NM_001033272) | promoter-TSS (NM_001033272) | -282 | NM_001033272 | 219140 | Mm.149776 | NM_001033272 | ENSMUSG00000021990 | Spata13 | C79050|ESTM11|FLJ00298|X83327|mFLJ00298 | spermatogenesis associated 13
chr11-390 | chr11 | 121709028 | 121709230 | + | 10.2 | 0.611 | Intergenic | Intergenic | 17597 | NM_029049 | 74675 | Mm.61213 | NM_029049 | ENSMUSG00000039198 | Ptchd3 | 4930451E13Rik|4933440L20Rik|RNDEu-3 | patched domain containing 3
chr8-846 | chr8 | 107965416 | 107965618 | + | 10.2 | 0.824 | [NAME] of 10) | [NAME] of 10) | 13977 | NM_001170789 | 270091 | Mm.212709 | NM_001033371 | ENSMUSG00000054320 | Lrrc36 | BC036564 | leucine rich repeat containing 36
chr19-79 | chr19 | 5663912 | 5664114 | + | 10.2 | 0.833 | promoter-TSS (NM_011379) | promoter-TSS (NM_011379) | -306 | NM_001164480 | 20469 | Mm.3072 | NM_001164480 | ENSMUSG00000056917 | Sipa1 | KIAA4074|Spa1 | signal-induced proliferation associated gene 1
chr16-84 | chr16 | 30252091 | 30252293 | + | 10.2 | 0.882 | Intergenic | Intergenic | 15426 | NM_027904 | 71756 | Mm.290614 | NM_027904 | ENSMUSG00000023176 | Cpn2 | 1300018K11Rik | carboxypeptidase N, polypeptide 2
chr19-74 | chr19 | 5016922 | 5017124 | + | 10.2 | 0.684 | Intergenic | Intergenic | -6983 | NM_007854 | 13340 | Mm.4930 | NM_007854 | ENSMUSG00000024891 | Slc29a2 | Der12|Ent2|Hnp36 | solute carrier family 29 (nucleoside transporters), member 2
chr1-201 | chr1 | 92100583 | 92100785 | + | 10.2 | 0.765 | intron (NM_007722, intron 1 of 1) | intron (NM_007722, intron 1 of 1) | 106 | NM_007722 | 12778 | Mm.6522 | NM_007722 | ENSMUSG00000044337 | Cxcr7 | AW541270|CXC-R7|CXCR-7|Cmkor1|RDC-1|Rdc1 | chemokine (C-X-C motif) receptor 7
chr10-89 | chr10 | 28863313 | 28863515 | + | 10.2 | 0.812 | promoter-TSS ([NAME]) | promoter-TSS ([NAME]) | -388 | [NAME] | 67412 | Mm.390264 | [NAME] | ENSMUSG00000038916 | 6330407J23Rik | - | RIKEN cDNA 6330407J23 gene
chr13-81 | chr13 | 22009898 | 22010100 | + | 10.2 | 0.824 | Intergenic | Intergenic | -21081 | NR_035500 | 100316716 |  | NR_035500 |  | Mir1983 | mmu-mir-1983 | microRNA 1983
chr4-329 | chr4 | 118814907 | 118815109 | + | 10.2 | 0.812 | Intergenic | B3|SINE|B2 | 31453 | NM_183140 | 195522 | Mm.169620 | NM_001145935 | ENSMUSG00000045268 | Zfp691 | 6430544H17Rik|MGC118413|Znf691 | zinc finger protein 691
chr15-73 | chr15 | 73327900 | 73328102 | + | 10.2 | 0.938 | Intergenic | Intergenic | -14989 | NM_001081066 | 105841 | Mm.322557 | NM_001081066 | ENSMUSG00000036661 | Dennd3 | AI447457|E030003N15Rik | DENN/MADD domain containing 3
chr2-123 | chr2 | 128891337 | 128891539 | + | 10.2 | 0.882 | promoter-TSS (NM_027192) | promoter-TSS (NM_027192) | -245 | NM_027192 | 69737 | Mm.479291 | NM_027192 | ENSMUSG00000027394 | Ttl | 2410003M22Rik|2700049H19Rik|AI848570 | tubulin tyrosine ligase
chr4-238 | chr4 | 60229607 | 60229809 | + | 10.2 | 0.933 | Intergenic | L1_Mus4|LINE|L1 | 5763 | NM_001134676 | 100041687 | Mm.489589 | NM_001134676 | ENSMUSG00000078687 | Mup8 | Gm12809|Mup5|OTTMUSG00000008509 | major urinary protein 8
chr15-114 | chr15 | 98727571 | 98727773 | + | 10.2 | 0.727 | [NAME] (NM_007857, intron 1 of 2) | [NAME] (NM_007857, intron 1 of 2) | 1299 | NM_007857 | 13363 | Mm.384073 | NM_007857 | ENSMUSG00000023000 | Dhh | C78960|MGC73610 | [NAME]
chr9-155 | chr9 | 107504409 | 107504611 | + | 10.2 | 0.667 | intron (NM_001042779, intron 9 of 19) | intron (NM_001042779, intron 9 of 19) | 3223 | NM_009153 | 20347 | Mm.4083 | NM_001042779 | ENSMUSG00000057969 | Sema3b | AW208495|LUCA-1|SemA|Semaa|sema5|semaV | sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
chr8-750 | chr8 | 86118081 | 86118283 | + | 10.2 | 0.8 | [NAME] intron 1 of 11) | [NAME] intron 1 of 11) | 208 | NM_027179 | 106529 | Mm.352239 | NM_027179 | ENSMUSG00000031708 | Tecr | 2410016D23Rik|A230102P12Rik|AI173355|D17Ertd178e|Gpsn2|MGC144249|SC2 | trans-2,3-enoyl-CoA reductase
chr6-374 | chr6 | 125728590 | 125728792 | + | 10.2 | 0.667 | [NAME] intron 4 of 25) | [NAME] intron 4 of 25) | 88254 | NM_153589 | 243634 | Mm.333398 | NM_153589 | ENSMUSG00000038115 | Ano2 | [NAME] | anoctamin 2
chr2-155 | chr2 | 173004830 | 173005032 | + | 10.2 | 0.722 | Intergenic | Intergenic | 26357 | NM_011044 | 18534 | Mm.485780 | NM_011044 | ENSMUSG00000027513 | Pck1 | AI265463|PEPCK|Pck-1 | phosphoenolpyruvate carboxykinase 1, cytosolic
chr13-104 | chr13 | 66816659 | 66816861 | + | 10.2 | 0.765 | Intergenic | Intergenic | 189526 | NM_026219 | 67530 | Mm.379136 | NM_026219 | ENSMUSG00000021520 | Uqcrb | 2210415M14Rik|MGC107639|MGC35665|QP-C|QPC|UQBC|UQBP|UQPC | ubiquinol-cytochrome c reductase binding protein
chr4-392 | chr4 | 154963282 | 154963484 | + | 10.2 | 0.565 | intron (NM_001159637, intron 11 of 11) | intron (NM_001159637, intron 11 of 11) | -12142 | NM_177186 | 320541 | Mm.489769 | NM_177186 | ENSMUSG00000042202 | Slc35e2 | A530082C11Rik|AI957035 | solute carrier family 35, member [NAME]
chr13-106 | chr13 | 80659176 | 80659378 | + | 10.2 | 0.933 | Intergenic | Intergenic | -363406 | NM_001042591 | 105171 | [NAME] | NM_001042591 | ENSMUSG00000074794 | Arrdc3 | AI450344|MGC107410|mKIAA1376 | arrestin domain containing 3
chr9-107 | chr9 | 21069373 | 21069575 | + | 10.2 | 0.65 | promoter-TSS (NM_153583) | promoter-TSS (NM_153583) | -269 | NM_153583 | 235040 | Mm.440165 | NM_153583 | ENSMUSG00000002820 | Atg4d | 9830134P12Rik|APG4-D|Apg4d|Atg4dl|Autl4|MGC31226 | autophagy related 4D, cysteine peptidase
chr12-831 | chr12 | 106545990 | 106546192 | + | 10.2 | 0.579 | Intergenic | ORR1B1|LTR|MaLR | -28713 | NR_045047 | 69952 | Mm.158311 | NR_045047 |  | 2810011L19Rik | - | RIKEN cDNA 2810011L19 gene
chr2-117 | chr2 | 103968124 | 103968326 | + | 10.2 | 0.867 | Intergenic | L2a|LINE|L2 | 5299 | NM_026634 | 68243 | Mm.158191 | NM_026634 | ENSMUSG00000032671 | A930018P22Rik | - | RIKEN cDNA A930018P22 gene
chr17-209 | chr17 | 34038706 | 34038908 | + | 10.2 | 0.875 | Intergenic | RLTR18B|LTR|ERVK | -3273 | NR_040470 | 474160 | Mm.206186 | NR_040470 |  | BC033916 | - | cDNA sequence BC033916
chr3-101 | chr3 | 116127964 | 116128166 | + | 10.2 | 0.824 | Intergenic | Intergenic | -1115 | NM_001173553 | 229776 | Mm.17647 | NM_001080818 | ENSMUSG00000033502 | Cdc14a | A830059A17Rik|CDC14A2|CDC14a1|Cdc14 | CDC14 cell division cycle 14 homolog A (S. cerevisiae)
chr9-163 | chr9 | 120111974 | 120112176 | + | 10.2 | 0.632 | Intergenic | B3A|SINE|B2 | 53215 | NM_001039364 | 17433 | Mm.486167 | NM_001039365 | ENSMUSG00000032517 | Mobp | AI835053|AI839848|MOBP155|MOBP170|MOBP69|MOBP73|MOBP81|R74645 | myelin-associated oligodendrocytic basic protein
chr1-233 | chr1 | 184450076 | 184450278 | + | 10.2 | 0.522 | Intergenic | Intergenic | -2563 | NM_009794 | 12334 | Mm.19306 | NM_009794 | ENSMUSG00000026509 | Capn2 | AI326419|Capa-2|Capa2|m-calpain|m-calpin | calpain 2
chr4-359 | chr4 | 133116972 | 133117174 | + | 10.2 | 0.867 | Intergenic | Intergenic | 7768 | NM_011850 | 23957 | Mm.346759 | NM_011850 | ENSMUSG00000037583 | Nr0b2 | SHP|SHP-1|Shp1 | nuclear receptor subfamily 0, group B, member 2
chr6-358 | chr6 | 125174867 | 125175069 | + | 10.2 | 0.889 | exon (NM_145391, exon 6 of 7) | exon (NM_145391, exon 6 of 7) | -6326 | NR_015604 | 78668 | Mm.441028 | NR_015604 |  | E130112N10Rik | 5830448L21Rik|9530059J11Rik | RIKEN cDNA E130112N10 gene
chr4-368 | chr4 | 135265123 | 135265325 | + | 10.2 | 0.652 | Intergenic | Intergenic | -18850 | NM_178257 | 230828 | Mm.261647 | NM_178257 | ENSMUSG00000037157 | Il22ra1 | 9130219A07Rik|ENSMUSG00000073746|IL-22R|Il22r | interleukin 22 receptor, alpha 1
chr11-336 | chr11 | 99435550 | 99435752 | + | 10.2 | 0.8 | Intergenic | LTR50|LTR|ERVL | 6679 | NM_027157 | 69664 | Mm.38303 | NM_027157 | ENSMUSG00000047253 | Krtap1-5 | 2310043L02Rik|AI592983 | keratin associated protein 1-5
chr19-92 | chr19 | 10314501 | 10314703 | + | 10.2 | 0.812 | [NAME] (NM_001033481, intron 1 of 25) | [NAME] (NM_001033481, intron 1 of 25) | 636 | NM_001033481 | 225908 | Mm.329716 | NM_001033481 | ENSMUSG00000036098 | Gm98 | 6030439E18|Gm1804|KIAA0954|Mrf | predicted gene 98
chr9-109 | chr9 | 21657219 | 21657421 | + | 10.2 | 0.765 | promoter-TSS (NM_177030) | promoter-TSS (NM_177030) | -241 | NM_177030 | 319899 | Mm.128153 | NM_177030 | ENSMUSG00000032198 | Dock6 | 2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395 | dedicator of cytokinesis 6
chr5-133 | chr5 | 105909856 | 105910058 | + | 10.2 | 0.6 | exon (NM_001033550, exon 4 of 5) | exon (NM_001033550, exon 4 of 5) | -38533 | NM_133897 | 100604 | Mm.392291 | NM_133897 | ENSMUSG00000054720 | [NAME] | AD158|AI326115|E430036I04Rik|fad158 | leucine rich repeat containing 8 family, member C
chr12-657 | chr12 | 25918382 | 25918584 | + | 10.2 | 0.75 | Intergenic | Intergenic | 104444 | NR_045844 | 432641 | Mm.112955 | NR_045844 |  | Gm17746 | - | predicted gene, 17746
chr10-110 | chr10 | 74980651 | 74980853 | + | 10.2 | 0.722 | promoter-TSS (NM_175133) | promoter-TSS (NM_175133) | -35 | NM_026095 | 67332 | [NAME] | NM_026095 | ENSMUSG00000020180 | Snrpd3 | 1700043E15Rik|2310009E13Rik|AW046420|SMD3 | small nuclear ribonucleoprotein D3
chr8-672 | chr8 | 14787485 | 14787687 | + | 10.2 | 0.842 | intron (NM_172910, intron 9 of 15) | intron (NM_172910, intron 9 of 15) | -100950 | NM_012000 | 26889 | [NAME] | NM_012000 | ENSMUSG00000026317 | Cln8 | [NAME] | ceroid-lipofuscinosis, neuronal 8
chr6-388 | chr6 | 127655403 | 127655605 | + | 10.2 | 0.722 | [NAME] intron 6 of 9) | ID_B1|SINE|B4 | 63673 | NM_201371 | 381813 | Mm.39750 | NM_201371 | ENSMUSG00000030350 | Prmt8 | Hrmt1l3|Hrmt1l4 | protein arginine N-methyltransferase 8
chr8-676 | chr8 | 15744329 | 15744531 | + | 10.2 | 0.933 | Intergenic | Intergenic | 424408 | NR_037214 | 100526464 |  | NR_037214 |  | Mir3106 | mmu-mir-3106 | microRNA 3106
chr19-123 | chr19 | 46961879 | 46962081 | + | 10.2 | 0.875 | non-coding (NR_028353, exon 19 of 19) | non-coding (NR_028353, exon 19 of 19) | 74861 | NM_029810 | 76952 | Mm.40965 | NM_001164363 | ENSMUSG00000025041 | Nt5c2 | 2010002I23Rik|CnII|ENSMUSG00000025039|Gm9751|Gmp|Nt5b|Pnt5|cN-II | 5'-nucleotidase, cytosolic II
chr1-169 | chr1 | 15699579 | 15699781 | + | 10.2 | 0.737 | exon (NM_001098528, exon 2 of 2) | exon (NM_001098528, exon 2 of 2) | -96059 | NM_009352 | 21749 | Mm.4306 | NM_009352 | ENSMUSG00000025925 | Terf1 | Pin2|Trbf1|Trf1 | telomeric repeat binding factor 1
chr8-619 | chr8 | 8918205 | 8918407 | + | 10.2 | 0.706 | Intergenic | Intergenic | 213982 | NR_045854 | 71249 | Mm.158635 | NR_045854 |  | 4933430N04Rik | - | RIKEN cDNA 4933430N04 gene
chr1-240 | chr1 | 193176455 | 193176657 | + | 10.2 | 0.765 | 3' UTR (NM_144880, exon 13 of 13) | 3' UTR (NM_144880, exon 13 of 13) | 26712 | NM_025864 | 66950 | Mm.236300 | NM_025864 | ENSMUSG00000026627 | Tmem206 | 2310028N02Rik|AI118576 | [NAME] 206
[NAME] | chr14 | 75683708 | 75683910 | + | 10.2 | 0.684 | promoter-TSS (NM_026083) | promoter-TSS (NM_026083) | -371 | NM_026083 | 67302 | Mm.74704 | NM_027377 | ENSMUSG00000022000 | Zc3h13 | 2600010B19Rik|3110050K21Rik|4930570G11Rik|C87618 | zinc finger CCCH type containing 13
chr11-347 | chr11 | 101594071 | 101594273 | + | 10.2 | 0.611 | promoter-TSS (NM_144831) | promoter-TSS (NM_144831) | -98 | NM_144831 | 217207 | [NAME] | NM_144831 | ENSMUSG00000034931 | Dhx8 | Ddx8|KIAA4096|MGC31290|mDEAH6|mKIAA4096 | DEAH (Asp-Glu-Ala-His) box polypeptide 8
chr6-409 | chr6 | 134910183 | 134910385 | + | 10.2 | 0.737 | Intergenic | Intergenic | -21735 | NM_001109914 | 381823 | Mm.296104 | NM_001109914 | ENSMUSG00000090698 | Apold1 | Gm1075 | apolipoprotein L domain containing 1
chr13-86 | chr13 | 34745363 | 34745565 | + | 10.2 | 0.75 | promoter-TSS (NM_025831) | promoter-TSS (NM_025831) | -914 | NM_025831 | 66895 | Mm.28943 | NM_025831 | ENSMUSG00000021411 | 1300014I06Rik | Pxdc1 | RIKEN cDNA 1300014I06 gene
chr4-283 | chr4 | 108625844 | 108626046 | + | 10.2 | 0.722 | intron (NR_040664, intron 2 of 5) | L1Md_F2|LINE|L1 | 18737 | NR_040664 | 77173 | Mm.402545 | NR_040664 |  | 8030443G20Rik | - | RIKEN cDNA 8030443G20 gene
chr18-60 | chr18 | 34911296 | 34911498 | + | 10.2 | 0.7 | promoter-TSS (NM_009860) | promoter-TSS (NM_009860) | -210 | NM_009860 | 12532 | Mm.286602 | NM_009860 | ENSMUSG00000044201 | Cdc25c | Cdc25 | cell division cycle 25 homolog C (S. pombe)
chr10-105 | chr10 | 61645819 | 61646021 | + | 10.2 | 0.65 | Intergenic | Intergenic | 48046 | NM_197996 | 70423 | Mm.416781 | NM_197996 | ENSMUSG00000037031 | Tspan15 | 1110036D12Rik|2700063A19Rik|AW048364|Tm4sf15 | tetraspanin 15
chr17-224 | chr17 | 47279962 | 47280164 | + | 10.2 | 0.737 | [NAME] (NM_001097623, intron 3 of 19) | [NAME] (NM_001097623, intron 3 of 19) | 2172 | NM_001097623 | 224829 | Mm.260989 | NM_001097623 | ENSMUSG00000064043 | Trerf1 | 9430096I18Rik|AI429294|B830015H24|MGC118525|RAPA|Trep-132|Trep132 | transcriptional regulating factor 1
chr1-190 | chr1 | 87548547 | 87548749 | + | 10.2 | 0.778 | [NAME] (NM_013673, intron 1 of 19) | RSINE1|SINE|B4 | 2023 | NM_013673 | 20684 | Mm.290906 | NM_013673 | ENSMUSG00000026222 | Sp100 | A430075G10Rik | nuclear antigen Sp100
chr2-139 | chr2 | 157233477 | 157233679 | + | 10.2 | 0.667 | Intergenic | Intergenic | -16451 | NM_009271 | 20779 | Mm.22845 | NM_001025395 | ENSMUSG00000027646 | Src | AW259666|pp60c-src | Rous sarcoma oncogene
[NAME] | chr14 | 32149461 | 32149663 | + | 10.2 | 0.8 | promoter-TSS (NM_009796) | promoter-TSS (NM_009796) | -348 | NM_009796 | 12339 | Mm.201535 | NM_009796 | ENSMUSG00000021893 | Capn7 | AU022319|PalBH | calpain 7
chr19-72 | chr19 | 4810642 | 4810844 | + | 10.2 | 0.882 | [NAME] 2) | [NAME] 2) | 891 | NM_019869 | 56275 | Mm.276338 | NM_019869 | ENSMUSG00000006456 | Rbm14 | 1300007E16Rik|PSP2|Sytip|p16|p16K | RNA binding motif protein 14
chr4-247 | chr4 | 98042213 | 98042415 | + | 10.2 | 0.875 | [NAME], intron 2 of 6) | MTEb|LTR|MaLR | 7642 | [NAME] | 94043 | Mm.331719 | [NAME] | ENSMUSG00000028563 | Tm2d1 | 2310026L18Rik|AA990549|Bbp | TM2 domain containing 1
chr5-117 | chr5 | 39080952 | 39081154 | + | 10.2 | 0.619 | Intergenic | Intergenic | -4988 | NM_001177902 | 100515 | Mm.38277 | NM_001081144 | ENSMUSG00000046572 | Zfp518b | 6820424L24Rik|AA410078|AI661722|Znf518b | zinc finger protein 518B
chr8-807 | chr8 | 93655413 | 93655615 | + | 10.2 | 0.727 | [NAME] (NM_010241, intron 2 of 10) | [NAME] (NM_010241, intron 2 of 10) | 3881 | NM_010241 | 14339 | Mm.324588 | NM_010241 | ENSMUSG00000031667 | Aktip | AL023020|Fif|Ft|Ft1|Fts | thymoma viral proto-oncogene 1 interacting protein
chr6-327 | chr6 | 121007385 | 121007587 | + | 10.2 | 0.812 | [NAME] (NM_153396, intron 1 of 17) | [NAME] (NM_153396, intron 1 of 17) | 24141 | NM_153396 | 194401 | [NAME] | NM_153396 | ENSMUSG00000003178 | Mical3 | C130040D16Rik|KIAA0819|Mical-3|mKIAA1364 | microtubule associated monoxygenase, calponin and LIM domain containing 3
chr8-828 | chr8 | 97844519 | 97844721 | + | 10.2 | 0.824 | intron (NM_028532, intron 5 of 6) | CpG-14388 | 9107 | NM_028532 | 73407 | Mm.472783 | NM_028532 | ENSMUSG00000090206 | Tepp | 1700055M20Rik|MGC107117 | testis, prostate and placenta expressed
chr6-404 | chr6 | 134193698 | 134193900 | + | 10.2 | 0.667 | intron (NM_007961, intron 4 of 7) | intron (NM_007961, intron 4 of 7) | -152548 | NM_025778 | 66813 | Mm.474472 | NM_025778 | ENSMUSG00000030200 | Bcl2l14 | 4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg | BCL2-like 14 (apoptosis facilitator)
chr8-875 | chr8 | 113486536 | 113486738 | + | 10.2 | 0.765 | intron (NM_009179, intron 3 of 6) | B3|SINE|B2 | 35086 | NM_007916 | 13680 | Mm.287901 | NM_007916 | ENSMUSG00000015023 | Ddx19a | DBP5|Ddx19|Eif4a-rs1 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
chr7-184 | chr7 | 132837845 | 132838047 | + | 10.2 | 0.867 | [NAME] (NM_207239, intron 5 of 36) | [NAME] (NM_207239, intron 5 of 36) | 13256 | NM_207239 | 233863 | Mm.294173 | NM_207239 | ENSMUSG00000032777 | Gtf3c1 | - | general transcription factor [NAME] 1
chr6-289 | chr6 | 114741329 | 114741531 | + | 10.2 | 0.619 | [NAME] (NM_001253718, intron 19 of 19) | [NAME] (NM_001253718, intron 19 of 19) | 130340 | NM_177683 | 232334 | Mm.446323 | NM_177683 | ENSMUSG00000030315 | [NAME] | BC048841|MGC54805|VGL-4 | vestigial like 4 (Drosophila)
chr8-1012 | chr8 | 128807925 | 128808127 | + | 10.2 | 0.765 | Intergenic | Intergenic | -14453 | NM_175434 | 210027 | Mm.459322 | NM_175434 | ENSMUSG00000057060 | Slc35f3 | B230375D17Rik|MGC141263|MGC141264 | solute carrier family 35, member F3
chr16-105 | chr16 | 97956659 | 97956861 | + | 10.2 | 0.889 | Intergenic | Intergenic | 28602 | NM_023663 | 72388 | Mm.35290 | NM_023663 | ENSMUSG00000005251 | Ripk4 | 2310069J12Rik|AI552420|ANKK2|Ankrd3|DIk|PKK|RIP4 | receptor-interacting serine-threonine kinase 4
chr6-412 | chr6 | 135239519 | 135239721 | + | 10.2 | 0.632 | Intergenic | ID_B1|SINE|B4 | 20782 | NM_029595 | 76400 | Mm.293018 | NM_029595 | ENSMUSG00000047104 | Pbp2 | 1700023A18Rik|AI326308|MGC130302|MGC130303|Pebp-2|Pebp2 | phosphatidylethanolamine binding protein 2
chr15-101 | chr15 | 84209959 | 84210161 | + | 10.2 | 0.562 | 3' UTR (NM_001163145, exon 5 of 5) | 3' UTR (NM_001163145, exon 5 of 5) | 53511 | NM_001162500 | 64099 | Mm.251356 | NM_001162500 | ENSMUSG00000022439 | Parvg | AI413459 | parvin, gamma
chr17-179 | chr17 | 29268137 | 29268339 | + | 10.2 | 0.778 | Intergenic | Intergenic | -3763 | NM_001002786 | 442827 | Mm.440341 | NM_001002786 | ENSMUSG00000064147 | Rab44 | 9830134C10Rik | RAB44, member RAS oncogene family
chr4-318 | chr4 | 117274061 | 117274263 | + | 10.2 | 0.765 | [NAME] (NM_080469, intron 6 of 8) | [NAME] (NM_080469, intron 6 of 8) | 51063 | NM_080469 | 140546 | Mm.235891 | NM_080469 | ENSMUSG00000033423 | Eri3 | PINT1|Prnpip1 | exoribonuclease 3
chr7-148 | chr7 | 35159237 | 35159439 | + | 10.2 | 0.824 | intron (NM_025948, intron 2 of 10) | RMER1B|Other|Other | 15221 | NM_025948 | 67070 | Mm.276503 | NM_025948 | ENSMUSG00000066568 | Lsm14a | 2700023B17Rik|AA407828|AU017544|Tral | LSM14 homolog A (SCD6, S. cerevisiae)
chr19-113 | chr19 | 45081309 | 45081511 | + | 10.2 | 0.842 | promoter-TSS (NM_053164) | promoter-TSS (NM_053164) | 362 | NM_153796 | 226153 | Mm.105585 | NM_153796 | ENSMUSG00000025209 | Peo1 | D19Ertd626e|MGC41750|PEO|Twinl | progressive external ophthalmoplegia 1 (human)
chr19-101 | chr19 | 27285447 | 27285649 | + | 10.2 | 0.682 | Intergenic | Intergenic | -5962 | NM_013703 | 22359 | Mm.4141 | NM_001161420 | ENSMUSG00000024924 | Vldlr | AA408956|AI451093|AW047288 | very low density lipoprotein receptor
chr2-144 | chr2 | 163280199 | 163280401 | + | 10.2 | 0.667 | 3' UTR (NM_144891, exon 6 of 6) | 3' UTR (NM_144891, exon 6 of 6) | 16097 | NM_144891 | 228858 | Mm.102080 | NM_144891 | ENSMUSG00000017943 | Gdap1l1 | Gdap1l|MGC28116 | ganglioside-induced differentiation-associated protein 1-like 1
chr16-70 | chr16 | 10871840 | 10872042 | + | 10.2 | 0.722 | Intergenic | Intergenic | 36789 | NM_001162932 | 223970 | Mm.325777 | NM_001033278 | ENSMUSG00000037991 | A630055G03Rik | [NAME] | RIKEN cDNA A630055G03 gene
chr15-108 | chr15 | 88659194 | 88659396 | + | 10.2 | 0.667 | Intergenic | Intergenic | 9219 | NM_029720 | 76737 | Mm.292567 | NM_029720 | ENSMUSG00000023272 | Creld2 | 5730592L21Rik|C85758 | cysteine-rich with EGF-like domains 2
chr7-168 | chr7 | 85500027 | 85500229 | + | 10.2 | 0.75 | intron (NM_182809, intron 12 of 13) | intron (NM_182809, intron 12 of 13) | 222596 | NM_008746 | 18213 | Mm.421361 | NM_008746 | ENSMUSG00000059146 | Ntrk3 | AW125844|Ntrk3_tv3|TrkC | neurotrophic tyrosine kinase, receptor, type 3
chr9-111 | chr9 | 21807439 | 21807641 | + | 10.2 | 0.75 | promoter-TSS (NM_008925) | promoter-TSS (NM_008925) | 61 | NM_008925 | 19089 | Mm.214593 | NM_008925 | ENSMUSG00000003402 | Prkcsh | 80K-H | protein kinase C substrate 80K-H
chr13-90 | chr13 | 44213394 | 44213596 | + | 10.2 | 0.667 | Intergenic | Intergenic | -3041 | NR_045285 | 328235 | Mm.188356 | NR_045285 |  | [NAME] | A730030A06 | predicted gene 5083
chr8-721 | chr8 | 72373190 | 72373392 | + | 10.2 | 0.688 | [NAME] (NM_001024954, intron 1 of 7) | ID_B1|SINE|B4 | 16688 | NM_001024954 | 80720 | Mm.417606 | NM_001024954 | ENSMUSG00000031860 | Pbx4 | 2410015M21Rik|AI429113|AW045266 | pre B cell leukemia homeobox 4
chr6-270 | chr6 | 92892261 | 92892463 | + | 10.2 | 0.789 | intron (NR_015530, intron 1 of 2) | intron (NR_015530, intron 1 of 2) | 1786 | NR_015530 | 330385 | Mm.487604 | NR_015530 |  | 9530026P05Rik | B430306B02 | RIKEN cDNA 9530026P05 gene
[NAME] | chr14 | 20796757 | 20796959 | + | 10.2 | 0.667 | promoter-TSS (NM_010315) | promoter-TSS (NM_010315) | -387 | NM_010315 | 14702 | Mm.41737 | NM_001038637 | ENSMUSG00000043004 | Gng2 | 1110003P13Rik|82 | guanine nucleotide binding protein (G protein), gamma 2
chr11-330 | chr11 | 97793206 | 97793408 | + | 10.2 | 0.765 | intron (NM_028199, intron 11 of 13) | intron (NM_028199, intron 11 of 13) | -47839 | NM_001081435 | 72973 | Mm.245939 | NM_001081435 | ENSMUSG00000070336 | Fbxo47 | 2900052P03Rik|Gm1562|MGC118329 | F-box protein 47
chr17-187 | chr17 | 30451518 | 30451720 | + | 10.2 | 0.722 | [NAME] (NM_172618, intron 7 of 11) | MTC-int|LTR|MaLR | 81506 | NR_030688 | 623169 | Mm.440508 | NR_030688 |  | [NAME] | EG623169 | ribosomal protein S17 pseudogene
chr7-145 | chr7 | 29965606 | 29965808 | + | 10.2 | 0.75 | promoter-TSS (NM_026545) | promoter-TSS (NM_026545) | -15 | NM_026545 | 57296 | Mm.273152 | NM_026545 | ENSMUSG00000030591 | Psmd8 | 6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433 | proteasome (prosome, macropain) 26S subunit, non-ATPase, 8
chr11-310 | chr11 | 80942801 | 80943003 | + | 10.2 | 0.765 | intron (NM_001034013, intron 1 of 9) | intron (NM_001034013, intron 1 of 9) | 23503 | NM_007384 | 11418 | Mm.234998 | NM_001034013 | ENSMUSG00000020704 | [NAME] | ACIC2|ASIC2|BNC1|BNaC1|BNaC1a|Mdeg | amiloride-sensitive cation channel 1, neuronal (degenerin)
chr10-124 | chr10 | 80133751 | 80133953 | + | 10.2 | 0.765 | [NAME] (NM_021462, intron 3 of 11) | [NAME] (NM_021462, intron 3 of 11) | 869 | NM_021462 | 17347 | Mm.486332 | NM_021462 | ENSMUSG00000020190 | Mknk2 | 2010016G11Rik|Gprk7|Mnk2 | MAP kinase-interacting serine/threonine kinase 2
chr9-124 | chr9 | 44493636 | 44493838 | + | 10.2 | 0.684 | TTS (NM_153537) | TTS (NM_153537) | 12416 | NM_021481 | 58866 | Mm.45380 | NM_021481 | ENSMUSG00000032098 | Treh | 2210412M19Rik | trehalase (brush-border membrane glycoprotein)
chr12-718 | chr12 | 94775926 | 94776128 | + | 10.2 | 0.706 | Intergenic | L1_Mus4|LINE|L1 | -1688430 | NM_011344 | 20338 | Mm.250605 | NM_001039089 | ENSMUSG00000020964 | Sel1l | AW493766|KIAA4137|Sel1h|mKIAA4137 | sel-1 suppressor of lin-12-like (C. elegans)
[NAME] | chr14 | 63764813 | 63765015 | + | 10.2 | 0.765 | TTS (NM_007798) | TTS (NM_007798) | 23615 | NM_007798 | 13030 | Mm.236553 | NM_007798 | ENSMUSG00000021939 | Ctsb | CB | cathepsin B
chr10-126 | chr10 | 80473925 | 80474127 | + | 10.2 | 0.765 | intron (NM_010319, intron 1 of 3) | intron (NM_010319, intron 1 of 3) | 3644 | NM_010319 | 14708 | Mm.222496 | NM_001038655 | ENSMUSG00000048240 | Gng7 | AI840417 | guanine nucleotide binding protein (G protein), gamma 7
chr7-204 | chr7 | 152008937 | 152009139 | + | 10.2 | 0.765 | Intergenic | Intergenic | -15479 | NM_008007 | 14174 | Mm.4947 | NM_008007 | ENSMUSG00000031074 | Fgf3 | Fgf-3|Int-2|Int-P | fibroblast growth factor 3
chr13-99 | chr13 | 55628065 | 55628267 | + | 10.2 | 0.706 | intron (NM_013739, intron 2 of 4) | intron (NM_013739, intron 2 of 4) | 1733 | NM_013739 | 27261 | Mm.33910 | NM_013739 | ENSMUSG00000035711 | Dok3 | AI450713|Dokl|MGC151299 | docking protein 3
chr16-98 | chr16 | 92057819 | 92058021 | + | 10.2 | 0.824 | promoter-TSS (NM_017391) | promoter-TSS (NM_017391) | -647 | NM_017391 | 53881 | Mm.451146 | NM_017391 | ENSMUSG00000089774 | Slc5a3 | AA623876|BF642829|Smit1 | solute carrier family 5 (inositol transporters), member 3
[NAME] | chr14 | 118822025 | 118822227 | + | 10.2 | 0.765 | Intergenic | Intergenic | 57026 | NR_045624 | 73306 | Mm.362328 | NR_045624 |  | 1700044C05Rik | - | RIKEN cDNA 1700044C05 gene
chr15-65 | chr15 | 39661297 | 39661499 | + | 10.2 | 0.833 | [NAME] (NM_022722, intron 4 of 9) | [NAME] (NM_022722, intron 4 of 9) | 27618 | NM_001164466 | 64705 | Mm.275974 | NM_001164466 | ENSMUSG00000022304 | Dpys | 1200017I10Rik|1300004I01Rik|DHP|DHPase | dihydropyrimidinase
chr7-163 | chr7 | 72205145 | 72205347 | + | 10.2 | 0.882 | intron (NM_183087, intron 1 of 9) | intron (NM_183087, intron 1 of 9) | 96168 | NM_183087 | 70638 | Mm.441986 | NM_183087 | ENSMUSG00000030518 | Fam189a1 | 5730507A09Rik|AW047451 | family with sequence similarity 189, member [NAME]
chr6-429 | chr6 | 139588295 | 139588497 | + | 10.2 | 0.812 | [NAME] (NM_207683, intron 7 of 32) | B3|SINE|B2 | 52624 | NM_207683 | 18705 | Mm.391538 | NM_207683 | ENSMUSG00000030228 | Pik3c2g | C80387 | phosphatidylinositol 3-kinase, C2 domain containing, gamma polypeptide
chr8-797 | chr8 | 91497797 | 91497999 | + | 10.2 | 0.706 | Intergenic | Intergenic | 70163 | NM_021390 | 58198 | Mm.214361 | NM_021390 | ENSMUSG00000031665 | Sall1 | Msal-3 | sal-like 1 (Drosophila)
chr12-930 | chr12 | 111364868 | 111365070 | + | 10.2 | 0.882 | Intergenic | Intergenic | 31314 | NR_045466 | 67280 | Mm.390495 | NR_045466 |  | 3110009F21Rik | - | RIKEN cDNA 3110009F21 gene
chr12-796 | chr12 | 104495668 | 104495870 | + | 10.2 | 0.8 | Intergenic | Intergenic | -15413 | NM_133364 | 170952 | Mm.217019 | NM_178023 | ENSMUSG00000041669 | Prima1 | [NAME] | proline rich membrane anchor 1
chr16-68 | chr16 | 8667351 | 8667553 | + | 10.2 | 0.737 | [NAME] (NM_025821, intron 1 of 3) | L2b|LINE|L2 | 4794 | NM_025821 | 52502 | Mm.142095 | NM_025821 | ENSMUSG00000008393 | Carhsp1 | 1200011K09Rik|Crhsp-24|D16Ertd465e|MGC101919 | calcium regulated heat stable protein 1
chr15-121 | chr15 | 100958408 | 100958610 | + | 10.2 | 0.6 | promoter-TSS (NM_009612) | promoter-TSS (NM_009612) | -459 | NM_009612 | 11482 | Mm.279542 | NM_009612 | ENSMUSG00000000530 | Acvrl1 | AI115505|AI427544|Acvrlk1|Alk1 | activin A receptor, type II-like 1
chr11-305 | chr11 | 78230312 | 78230514 | + | 10.2 | 0.667 | [NAME] (NM_022411, intron 1 of 11) | [NAME] (NM_022411, intron 1 of 11) | 5274 | NM_022411 | 20500 | Mm.274058 | NM_022411 | ENSMUSG00000001095 | Slc13a2 | Nadc1|mNaDC-1 | solute carrier family 13 (sodium-dependent dicarboxylate transporter), member 2
chr17-232 | chr17 | 56174824 | 56175026 | + | 10.2 | 0.778 | [NAME] (NM_001252471, intron 1 of 8) | [NAME] (NM_001252471, intron 1 of 8) | 1135 | NM_013664 | 20405 | Mm.1773 | NM_001252471 | ENSMUSG00000003200 | Sh3gl1 | C77078|EEN|SH3P8|Sh3d2b | SH3-domain GRB2-like 1
chr6-459 | chr6 | 145551480 | 145551682 | + | 10.2 | 0.8 | Intergenic | Intergenic | -12902 | NM_009449 | 22147 | Mm.270295 | NM_009449 | ENSMUSG00000067338 | Tuba3b | [NAME] | tubulin, alpha 3B
chr1-243 | chr1 | 194127589 | 194127791 | + | 10.2 | 0.765 | [NAME] 6 of 10) | [NAME] 6 of 10) | 112936 | NM_010600 | 16510 | Mm.4489 | NM_001038607 | ENSMUSG00000058248 | Kcnh1 | M-eag|MGC124419|MGC124420 | potassium voltage-gated channel, subfamily H (eag-related), member 1
chr12-705 | chr12 | 90425506 | 90425708 | + | 10.2 | 0.7 | exon (NM_001198587, exon 5 of 21) | exon (NM_001198587, exon 5 of 21) | 233773 | NM_172544 | 18191 | Mm.487864 | NM_001198587 | ENSMUSG00000066392 | Nrxn3 | 4933401A11Rik|6332407J11|9330112C09Rik|D12Bwg0831e | neurexin III
chr11-259 | chr11 | 5668431 | 5668633 | + | 10.2 | 0.8 | [NAME] (NR_015577, intron 2 of 6) | [NAME] (NR_015577, intron 2 of 6) | -6153 | NM_001077661 | 72046 | Mm.271657 | NM_001077661 | ENSMUSG00000049680 | Urgcp | 2010005J08Rik|9130001I21Rik|AW060359|Urg4|mKIAA1507 | upregulator of cell proliferation
chr4-303 | chr4 | 116228417 | 116228619 | + | 10.2 | 0.684 | promoter-TSS (NM_177670) | promoter-TSS (NM_177670) | 30 | NM_177670 | 230657 | Mm.291484 | NM_177670 | ENSMUSG00000055900 | Tmem69 | A630048M13Rik|MGC118424 | [NAME] 69
chr2-82 | chr2 | 27326424 | 27326626 | + | 10.2 | 0.824 | [NAME], intron 1 of 12) | [NAME], intron 1 of 12) | 4393 | NM_023336 | 67382 | Mm.28721 | NM_001113573 | ENSMUSG00000026918 | Brd3 | 2410084F24Rik|AW060456|Fsrg2|ORFX|RINGL3 | bromodomain containing 3
chr3-99 | chr3 | 108192156 | 108192358 | + | 10.2 | 0.667 | Intergenic | Intergenic | 5501 | NM_019976 | 56742 | [NAME] | NM_001190161 | ENSMUSG00000068744 | [NAME] | 5430413I02Rik|AL033312|Dda3|MGC7063 | proline/serine-rich coiled-coil 1
chr6-419 | chr6 | 136518812 | 136519014 | + | 10.2 | 0.824 | [NAME] (NM_019426, intron 5 of 14) | [NAME] (NM_019426, intron 5 of 14) | 51541 | NM_019426 | 54343 | Mm.489690 | NM_019426 | ENSMUSG00000030213 | Atf7ip | 2610204M12Rik|AM|Mcaf1 | activating transcription factor 7 interacting protein
chr17-155 | chr17 | 25974519 | 25974721 | + | 10.2 | 0.812 | promoter-TSS (NM_144816) | promoter-TSS (NM_144816) | -548 | NM_144816 | 214951 | Mm.490018 | NM_144816 | ENSMUSG00000025735 | Rhbdl1 | MGC28800|Rhbdl | rhomboid, veinlet-like 1 (Drosophila)
chr13-79 | chr13 | 15521031 | 15521233 | + | 10.2 | 0.933 | Intergenic | Intergenic | -34424 | NM_008130 | 14634 | Mm.5098 | NM_008130 | ENSMUSG00000021318 | Gli3 | AI854843|AU023367|Bph|GLI3-190|GLI3FL|Pdn|Xt|add | GLI-Kruppel family member [NAME]
chr8-620 | chr8 | 9005068 | 9005270 | + | 10.2 | 0.824 | Intergenic | Intergenic | 127119 | NR_045854 | 71249 | Mm.158635 | NR_045854 |  | 4933430N04Rik | - | RIKEN cDNA 4933430N04 gene
chr8-805 | chr8 | 93196933 | 93197135 | + | 10.2 | 0.8 | Intergenic | LTR33A|LTR|ERVL | -155700 | NM_177224 | 109151 | Mm.100615 | NM_177224 | ENSMUSG00000056608 | Chd9 | 1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308 | chromodomain helicase DNA binding protein 9
chr6-470 | chr6 | 148450772 | 148450974 | + | 10.2 | 0.722 | Intergenic | Intergenic | -57999 | NM_198967 | 387314 | Mm.137858 | NM_198967 | ENSMUSG00000030306 | Tmtc1 | [NAME] | [NAME] and tetratricopeptide repeat containing 1
chr4-226 | chr4 | 19368793 | 19368995 | + | 10.2 | 0.875 | intron (NM_013927, intron 13 of 17) | intron (NM_013927, intron 13 of 17) | 128357 | NM_027769 | 70568 | Mm.38390 | NM_027769 | ENSMUSG00000028228 | Cpne3 | 5430428M23Rik|5730450C07Rik|C85108|CPN3|KIAA0636 | copine III
[NAME] | chr11 | 95394448 | 95394650 | + | 10.2 | 0.632 | Intergenic | Intergenic | -18670 | NM_130858 | 104079 | Mm.22970 | NM_130858 | ENSMUSG00000046719 | Nxph3 | - | neurexophilin 3
chr4-381 | chr4 | 147661031 | 147661233 | + | 10.2 | 0.636 | [NAME] (NM_001083342, intron 1 of 20) | [NAME] (NM_001083342, intron 1 of 20) | 942 | NM_001083342 | 242748 | Mm.33873 | NM_001083342 | ENSMUSG00000041544 | Ptchd2 | G630052C06Rik|RNDEu-2 | patched domain containing 2
chr12-878 | chr12 | 109097304 | 109097506 | + | 10.2 | 0.706 | Intergenic | Intergenic | -123707 | NR_045973 | 74968 | [NAME] | NR_045973 |  | 4930465M20Rik | 4930431H15Rik | RIKEN cDNA 4930465M20 gene
chr8-642 | chr8 | 12328591 | 12328793 | + | 10.2 | 0.75 | Intergenic | Intergenic | -57079 | NR_027975 | 434280 | Mm.447484 | NM_001013812 |  | [NAME] | EG434280 | predicted gene 5607
chr4-248 | chr4 | 99009045 | 99009247 | + | 10.2 | 0.667 | Intergenic | Intergenic | 148308 | NM_001145967 | 242557 | Mm.241663 | NM_001145967 | ENSMUSG00000028550 | Atg4c | Apg4-C|Apg4c|Atg4cl|Autl1 | autophagy related 4C, cysteine peptidase
chr18-64 | chr18 | 36889946 | 36890148 | + | 10.2 | 0.867 | Intergenic | RMER13B|LTR|ERVK | -3739 | NM_009841 | 12475 | Mm.3460 | NM_009841 | ENSMUSG00000051439 | Cd14 | - | CD14 antigen
chr12-725 | chr12 | 99195423 | 99195625 | + | 10.2 | 0.6 | Intergenic | Intergenic | 302023 | NM_008079 | 14420 | Mm.5120 | NM_008079 | ENSMUSG00000021003 | Galc | 2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher | galactosylceramidase
chr16-83 | chr16 | 28858497 | 28858699 | + | 10.2 | 0.706 | [NAME], intron 1 of 1) | [NAME], intron 1 of 1) | 71186 | NM_177718 | 239796 | Mm.155887 | NM_177718 | ENSMUSG00000051065 | 1600021P15Rik | A430031N04|C87006|MGC103296|Mb21d2 | RIKEN cDNA 1600021P15 gene
[NAME] | chr11 | 116339198 | 116339400 | + | 10.2 | 0.706 | [NAME] (NM_026364, intron 6 of 9) | [NAME] (NM_026364, intron 6 of 9) | 12361 | NM_026364 | 67763 | Mm.25125 | NM_026364 | ENSMUSG00000015869 | Prpsap1 | 5730409F23Rik|PAP39 | phosphoribosyl pyrophosphate synthetase-associated protein 1
chr5-122 | chr5 | 66329351 | 66329553 | + | 10.2 | 0.875 | Intergenic | Intergenic | -28911 | NM_001081104 | 231252 | Mm.486671 | NM_001081104 | ENSMUSG00000029205 | Chrna9 | 2410015I05Rik|Acra9|EG666827|Gm8311 | [NAME], nicotinic, alpha polypeptide 9
chr8-833 | chr8 | 100044693 | 100044895 | + | 10.2 | 0.688 | Intergenic | MTA_Mm-int|LTR|MaLR | 1557350 | NR_037310 | 100499527 |  | NR_037310 |  | Mir1186b | mmu-mir-1186b | microRNA 1186b
chr8-734 | chr8 | 80073066 | 80073268 | + | 10.2 | 0.75 | promoter-TSS (NM_001081240) | promoter-TSS (NM_001081240) | -129 | NM_001081240 | 102182 | Mm.197630 | NM_178903 | ENSMUSG00000037134 | Prmt10 | AI931714 | [NAME] 10 (putative)
chr10-151 | chr10 | 128258708 | 128258910 | + | 10.2 | 0.765 | promoter-TSS (NM_024180) | promoter-TSS (NM_024180) | -18 | NM_025364 | 66118 | [NAME] | NM_025364 | ENSMUSG00000078427 | Sarnp | 1110005A23Rik|Cip29 | SAP domain containing ribonucleoprotein
chr6-313 | chr6 | 118811572 | 118811774 | + | 10.2 | 0.8 | [NAME] (NM_001256002, intron 3 of 47) | [NAME] (NM_001256002, intron 3 of 47) | -18503 | NR_046053 | 74363 | Mm.399403 | NR_046053 |  | 4931430N09Rik | - | RIKEN cDNA 4931430N09 gene
chr12-913 | chr12 | 110377660 | 110377862 | + | 10.2 | 0.8 | Intergenic | Intergenic | -71334 | NM_001163175 | 380785 | Mm.342085 | NM_001163175 | ENSMUSG00000040867 | Begain | BM948371|Gm897 | brain-enriched guanylate kinase-associated
chr8-976 | chr8 | 125858063 | 125858265 | + | 10.2 | 0.636 | intron (NM_172287, intron 1 of 14) | intron (NM_172287, intron 1 of 14) | 1551 | NM_172287 | 234857 | Mm.150200 | NM_172287 | ENSMUSG00000010154 | Spire2 | BC026502|KIAA1832|MGC31610|Spir-2|Spir2 | spire homolog 2 (Drosophila)
chr16-80 | chr16 | 18583447 | 18583649 | + | 10.2 | 0.706 | exon (NM_011532, exon 4 of 7) | exon (NM_011532, exon 4 of 7) | 3514 | NM_011532 | 21380 | Mm.295194 | NM_011532 | ENSMUSG00000009097 | Tbx1 | - | T-box 1
chr11-381 | chr11 | 118895685 | 118895887 | + | 10.2 | 0.722 | Intergenic | CpG | 6441 | NM_013926 | 30951 | Mm.99953 | NM_013926 | ENSMUSG00000025578 | Cbx8 | Pc3 | chromobox homolog 8 (Drosophila Pc class)
chr1-215 | chr1 | 144724948 | 144725150 | + | 10.2 | 0.882 | Intergenic | L1_Mus3|LINE|L1 | -762778 | NM_020025 | 26878 | Mm.285580 | NM_020025 | ENSMUSG00000033849 | B3galt2 | - | UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2
chr8-895 | chr8 | 119681456 | 119681658 | + | 10.2 | 0.75 | promoter-TSS (NM_001081151) | promoter-TSS (NM_001081151) | -478 | NM_001081151 | 209239 | Mm.132992 | NM_001081151 | ENSMUSG00000052557 | [NAME] | A330045G18|gigaxonin | giant axonal neuropathy
chr15-84 | chr15 | 77677492 | 77677694 | + | 10.2 | 0.765 | Intergenic | Intergenic | -5048 | NM_022410 | 17886 | Mm.29677 | NM_022410 | [NAME] | [NAME] | C80049|D0Jmb2|E030044M24Rik|Fltn|Myhn-1|Myhn1|NMHC II-A|NMHCIIA|NMMHC II-a|NMMHC-A|NMMHC-IIA|TU72.6 | [NAME], heavy polypeptide 9, non-muscle
chr6-387 | chr6 | 127567716 | 127567918 | + | 10.2 | 0.842 | [NAME] (NM_001033464, intron 5 of 6) | [NAME] (NM_001033464, intron 5 of 6) | 39824 | NM_001033464 | 381812 | Mm.296093 | NM_001033464 | ENSMUSG00000061414 | Efcab4b | Gm1073|Gm462 | EF-hand calcium binding domain 4B
chr15-124 | chr15 | 102113051 | 102113253 | + | 10.2 | 0.778 | TTS (NM_134100) | TTS (NM_134100) | 3265 | NM_134100 | 106073 | Mm.287740 | NM_134100 | ENSMUSG00000045665 | Mfsd5 | AA409375|AW556797|D15Mgi27 | major facilitator superfamily domain containing 5
chr8-883 | chr8 | 114344208 | 114344410 | + | 10.2 | 0.882 | [NAME] (NM_011801, intron 5 of 6) | [NAME] (NM_011801, intron 5 of 6) | 33901 | NM_011801 | 23837 | Mm.279437 | NM_011801 | ENSMUSG00000031954 | Cfdp1 | AA408409|Bcnt|Bucentaur|Cfdp|cp27 | craniofacial development protein 1
chr4-347 | chr4 | 125674526 | 125674728 | + | 10.2 | 0.636 | Intergenic | LTR33A_|LTR|ERVL | -27276 | NR_045561 | 12986 | Mm.271701 | NM_001252651 | ENSMUSG00000028859 | Csf3r | Cd114|Csfgr|G-CSF-R|G-CSFR|MGC141472|MGC141473 | colony stimulating factor 3 receptor (granulocyte)
chr5-111 | chr5 | 30876798 | 30877000 | + | 10.2 | 0.706 | non-coding (NR_040427, exon 4 of 4) | non-coding (NR_040427, exon 4 of 4) | -13644 | NM_010608 | 16527 | Mm.439936 | NM_010608 | ENSMUSG00000049265 | Kcnk3 | TASK|cTBAK-1 | potassium channel, subfamily K, member 3
chr7-181 | chr7 | 123355604 | 123355806 | + | 10.2 | 0.875 | Intergenic | Intergenic | -22350 | NM_172743 | 233765 | Mm.3741 | NM_172743 | ENSMUSG00000045659 | Plekha7 | A430081P20Rik|AI414265|MGC90927 | pleckstrin homology domain containing, family A member 7
chr8-698 | chr8 | 25530897 | 25531099 | + | 10.2 | 0.611 | Intergenic | Intergenic | 18420 | [NAME] | 69068 | Mm.25775 | [NAME] | ENSMUSG00000056313 | 1810011O10Rik | 1110065B09Rik|AW121743|AW321058 | RIKEN cDNA 1810011O10 gene
chr3-119 | chr3 | 134370848 | 134371050 | + | 10.2 | 0.812 | Intergenic | L1_Mur1|LINE|L1 | -121022 | NM_021382 | 21338 | Mm.103810 | NM_021382 | ENSMUSG00000028172 | Tacr3 | Nk3r|Nkr|Tac3r | [NAME] 3
chr8-651 | chr8 | 12786173 | 12786375 | + | 10.2 | 0.733 | [NAME] (NM_015804, intron 1 of 28) | [NAME] (NM_015804, intron 1 of 28) | 29258 | NM_015804 | 50770 | Mm.257837 | NM_015804 | ENSMUSG00000031441 | [NAME] | 4930558F19Rik|AU040868|Atpc1h|Ih | ATPase, class VI, type 11A
chr3-68 | chr3 | 65886518 | 65886720 | + | 10.2 | 0.812 | [NAME] (NM_145820, intron 12 of 13) | [NAME] (NM_145820, intron 12 of 13) | 53741 | NM_028357 | 72789 | Mm.443526 | NM_028357 | ENSMUSG00000027831 | Veph1 | 2810471M23Rik|Veph | [NAME] expressed PH domain homolog 1 (zebrafish)
chr6-468 | chr6 | 146798514 | 146798716 | + | 10.2 | 0.882 | promoter-TSS (NM_027059) | promoter-TSS (NM_027059) | -17 | NM_027059 | 69371 | [NAME] | NM_027059 | ENSMUSG00000030292 | 1700023A16Rik | - | RIKEN cDNA 1700023A16 gene
chr2-99 | chr2 | 32091797 | 32091999 | + | 10.2 | 0.65 | promoter-TSS (NM_145145) | promoter-TSS (NM_145145) | -305 | NM_145145 | 99011 | Mm.31192 | NM_145145 | ENSMUSG00000039254 | Pomt1 | AI505244 | protein-O-mannosyltransferase 1
chr4-345 | chr4 | 125636522 | 125636724 | + | 10.2 | 0.722 | Intergenic | Intergenic | -37069 | NR_015560 | 72395 | [NAME] | NR_015560 |  | 2610028E06Rik | BB043107 | RIKEN cDNA 2610028E06 gene
chr11-270 | chr11 | 52845854 | 52846056 | + | 10.2 | 0.778 | [NAME] (NM_177059, intron 4 of 15) | [NAME] (NM_177059, intron 4 of 15) | 87603 | NR_046047 | 790909 | Mm.489012 | NR_046047 |  | Gm11186 | OTTMUSG00000000039 | predicted gene 11186
chr15-94 | chr15 | 80852934 | 80853136 | + | 10.2 | 0.75 | [NAME] (NM_153049, intron 4 of 12) | [NAME] (NM_153049, intron 4 of 12) | 44840 | NM_134091 | 105835 | Mm.274943 | NM_134091 | ENSMUSG00000042303 | [NAME] | 1810012I01Rik|AI428557|BB175482|Cip85|R75178|RUSC3|Rutbc3 | small G protein signaling modulator 3
chr16-93 | chr16 | 38089118 | 38089320 | + | 10.2 | 0.65 | non-coding (NR_033221, exon 1 of 1) | non-coding (NR_033221, exon 1 of 1) | 127 | NR_033221 | 414072 | Mm.483602 | NR_033221 |  | BC031361 | - | cDNA sequence BC031361
chr8-832 | chr8 | 99860447 | 99860649 | + | 10.2 | 0.8 | Intergenic | L1_Mus4|LINE|L1 | 1373104 | NR_037310 | 100499527 |  | NR_037310 |  | Mir1186b | mmu-mir-1186b | microRNA 1186b
chr7-193 | chr7 | 142983019 | 142983221 | + | 10.2 | 0.824 | Intergenic | Intergenic | -75058 | NM_001081117 | 17345 | Mm.4078 | NM_001081117 | ENSMUSG00000031004 | Mki67 | D630048A14Rik|Ki-67|Ki67 | antigen identified by monoclonal antibody Ki 67
chr6-431 | chr6 | 140487154 | 140487356 | + | 10.2 | 0.7 | [NAME] (NM_144920, intron 10 of 30) | B1_Mur4|SINE|Alu | -83929 | NM_178803 | 11569 | Mm.479349 | NM_001005605 | ENSMUSG00000030232 | Aebp2 | AU023766|B230313N05Rik | AE binding protein 2
chr8-1017 | chr8 | 129415090 | 129415292 | + | 10.2 | 0.667 | Intergenic | (TG)n|Simple_repeat|Simple_repeat | 54630 | NM_024214 | 67952 | Mm.489811 | NM_024214 | ENSMUSG00000058779 | Tomm20 | 1810060K07Rik|BB284719|Gm19268|MAS20|MGC117642|MGC6333|MOM19|TOM20|mKIAA0016 | translocase of outer mitochondrial membrane 20 homolog (yeast)
chr2-102 | chr2 | 34495593 | 34495795 | + | 10.2 | 0.789 | Intergenic | Intergenic | 115058 | NM_025709 | 66691 | Mm.393397 | NM_025709 | ENSMUSG00000026867 | Gapvd1 | 2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|KIAA1521|RAP6|RME-6|mKIAA1521 | GTPase activating protein and VPS9 domains 1