Spreadsheet: 52c33444-0f63-4854-9577-0afffa3d0b9a
Sheet: Dataset S9

Dataset S9. Potential functional CDSs in genomic islands in all 73 isolates of serovar Agona.
Genomic Island / Plasmid ID | ori_name | [NAME]* | No. Genes* | Position in SL483† | Type | Lineage(s) ‡ |  | Functional CDSs | Locus_tag
GI2 | GI_002.MC_05-0209 | 7637 | 7 | 612079..612115 | Genomic | N02-N38 | 9 | PTS system (4 CDSs) | SAPA_G0162-5
 |  |  |  |  |  |  | 10 | sugar isomerase | SAPA_G0160
 |  |  |  |  |  |  | 11 | Glucosamine-fructose-6-phosphate aminotransferase | SAPA_G0161
GI8 |  | 2202 | 2 | 1092101..1094302 | Genomic | N16-20.H.06 (d) && N25-24.H.04 (d) | 15 | type VI secretion system effector, Hcp1 family | SAPA_G0362
GI9 | GI_009.DBS_20061833 | 13754 | 4 | 1114624..1114652 | Genomic | N02-N38 && N25-23.F.01 && N25-22.H.04 && N29-30.H.04 &&  N05-N16 && N16-20.H.06 (d) && N24-16.H.08 (d) && N17-N18 (d) | 16 | Type VI secretion system [NAME] family protein | SAPA_G0363
 |  |  |  |  |  |  |  | [NAME] protein | SAPA_G0365
GI13 |  | 2808 | 3 | 1451415..1454222 | Genomic | N38-72.A.52 (d) | 21 | methyl-accepting chemotaxis sensory transducer | SAPA_G0508
 |  |  |  |  |  |  |  | zinc transport protein ZntB | SAPA_G0509
GI14 | GI_014.WS0243 | 5756 | 6 | 1470579..1471114 | Genomic | N02-N38 | 22 | glutathione-dependent formaldehyde-activating, GFA | SAPA_G0517
 |  |  |  |  |  |  |  | Alpha/beta hydrolase | SAPA_G0514
 |  |  |  |  |  |  |  | Acyltransferase | SAPA_G0513
GI15A |  | 1346 | 1 | 1583966..1585311A | Genomic | N36-67.H.09 (d) | 23 | LysR substrate binding domain protein | SAPA_G0518
GI15B | GI_015.0309W51997 | 8346 | 8 | 1583966..1585311B | Genomic | N24-15.H.03 | 24 | Coat protein ABD (3 CDSs) | SAPA_G0522-4
GI16 | GI_016.0309W51997 | 2606 | 1 | 1803945..1803973 | Genomic | N06-40.E.08 (d) && N27-25.H.03 (d) | 25 | O-antigen polymerase | SAPA_G0527
GI22 |  | 53821 | 52 | 2925408..2979228 | Genomic | N32-39.O.03 (d) |  | SPI-1 (27 CDSs) | SAPA_G0742-768
 |  |  |  |  |  |  |  | mutS | SAPA_G0776
 |  |  |  |  |  |  |  | rpoS | SAPA_G0792
 |  |  |  |  |  |  |  | [NAME] (3 CDSs) | SAPA_G0788-90
GI23 |  | 2986 | 2 | 3021036..3024021 | Genomic | N05-62.H.72 (d) | 42 | GTP diphosphokinase | SAPA_G0794
 |  |  |  |  |  |  |  | 23S rRNA (uracil-5-)-methyltransferase RumA | SAPA_G0795
GI24B | GI_024.WS1033 | 112371 | 84 | 3193042..3193095B | ICE | N05-62.H.72 | 44 | Methyl-accepting chemotaxis sensory transducer | SAPA_G0880
 |  |  |  |  |  |  | 45 | Ion channel family | SAPA_G0893
 |  |  |  |  |  |  | 46 | sugar phosphotransferase cluster (3 CDSs) | SAPA_G0897-99
GI26 | GI_026.WS1035 | 8044 | 3 | 3337294..3337372 | Genomic | N05-63.H.87 | 52 | fliC | [NAME]
GI27 |  | 6813 | 5 | 3675820..3682632 | Genomic | N38-72.A.52 (d) | 53 | universal stress protein AB (2 CDSs) | SAPA_G1045-6
 |  |  |  |  |  |  |  | probable low-affinity inorganic phosphate transporter 2 | SAPA_G1044
 |  |  |  |  |  |  |  | tripeptide permease TppB | SAPA_G1047
GI30A | GI_030.0703S19930 | 18966 | 11 | 3970253..3970270A | IME | N17-18.H.07 |  | Type I restriction-modification system (3 CDSs) | SAPA_G1082-4
 |  |  |  |  |  |  |  | CiaB protein | SAPA_G1081
GI30B | GI_030.CS_NB04.055 | 29965 | 23 | 3970253..3970270B | IME | N25-24.H.04 |  | Aminoglycoside adenyltransferase A2 | SAPA_G1100
 |  |  |  |  |  |  |  | Beta-lactamase PSE1 | SAPA_G1101 | catalyzes the second step in the degradation of histidine
 |  |  |  |  |  |  |  | Florfenicol resistence | SAPA_G1102
 |  |  |  |  |  |  |  | sulphonamides resistence | SAPA_G1106 | toxin-antitoxin
 |  |  |  |  |  |  |  | phenicol resistance | SAPA_G1107
 |  |  |  |  |  |  |  | Tetracycline resistance (2 CDSs) | SAPA_G1108-9
GI30C | GI_030.MC_09-0426 | 36032 | 26 | 3970253..3970270C | IME | N36-67.H.09 |  | Aminoglycoside adenyltransferase | SAPA_G1099
 |  |  |  |  |  |  |  | Florfenicol resistence | SAPA_G1102
 |  |  |  |  |  |  |  | Tetracycline resistance (2 CDSs) | SAPA_G1116-7
 |  |  |  |  |  |  |  | Indigoidine resistance | SAPA_G1115
 |  |  |  |  |  |  |  | Mercuric transport (4 CDSs) | SAPA_G1118-21
GI32 | GI_032.WR-10-02783 | 93879 | 84 | 4499372..4499427 | ICE | N16-21.H.10 | 66 | Arsenical resistance (5 CDSs) | SAPA_G1214-8
 |  |  |  |  |  |  |  | Copper resistance (18 CDSs) | SAPA_G1228-45
P_2 | P2.DBS_20060793 | 73071 | 50 | NA | Plasmid | N16-20.H.06 | 72 | bioCDSsis of c-type cytochromes (9 CDSs) | SAPA_P0064-72
 |  |  |  |  |  |  |  | Urocanate hydratase | [NAME]
 |  |  |  |  |  |  |  | Formamidase | SAPA_P0062
 |  |  |  |  |  |  |  | vagC-vagD (toxin-antitoxin system) | SAPA_P0076-7
P_3A | P3.MC_05-0784 | 94849 | 87 | NA | Plasmid | N19-08.A.05 && N19-N20 && N20-01.O.05 (d) && N20-N21 (d) |  | Streptomycin resistence (2 CDSs) | SAPA_P0141-2
 |  |  |  |  |  |  |  | Collagenase and related proteases | SAPA_P0187
 |  |  |  |  |  |  |  | Beta-lactamase TEM | SAPA_I0036
P_3B | P3.WR-00-06755 | 91890 | 101 | NA | Plasmid | N34-32.A.00 |  | Indigoidine resistance | SAPA_P0122 | The [NAME] gallisepticum OsmC-like protein MG1142 resides on the cell surface and binds heparin.
 |  |  |  |  |  |  |  | Tetracycline resistance (2 CDSs) | SAPA_P0123-4 | NAD- or NADP-dependent oxidoreductases
 |  |  |  |  |  |  |  | Mercuric resistance (6 CDSs) | SAPA_P0125-30
 |  |  |  |  |  |  |  | [NAME] | [NAME]
 |  |  |  |  |  |  |  | Collagenase and related proteases | SAPA_P0187 | The catechol and protocatechuate branches of the 3-oxoadipate pathway, which are important for the bacterial degradation of aromatic compounds, converge at the common intermediate 3-oxoadipate enol-lactone. Carboxymuconolactone decarboxylase (CMD) is involved in protocatechuate catabolism.
P_3C | P3.MC_04-0873.1 | 101489 | 100 | NA | Plasmid | N29-30.H.04 |  | sulphonamides resistence | SAPA_P0145
 |  |  |  |  |  |  |  | Aminoglycoside adenyltransferase A2 | [NAME]
 |  |  |  |  |  |  |  | Chloramphenicol resistence | SAPA_P0148
 |  |  |  |  |  |  |  | Streptothricin resistence | SAPA_P0150
 |  |  |  |  |  |  |  | [NAME] | [NAME]
 |  |  |  |  |  |  |  | Collagenase and related proteases | SAPA_P0187
P_3D | P3.WS1035 | 51561 | 131 | NA | Plasmid | N05-63.H.87 |  | [NAME] | [NAME]
 |  |  |  |  |  |  |  | Collagenase and related proteases | SAPA_P0187
P_4 | P4.DBS_20091706 | 33090 | 31 | NA | Plasmid | N33-34.H.09 | 77 | OsmC-like protein | SAPA_P0248
 |  |  |  |  |  |  | 78 | Oxidoreductase short chain dehydrogenase/reductase family | SAPA_P0249
 |  |  |  |  |  |  | 79 | isomerase | SAPA_P0250
 |  |  |  |  |  |  |  | NADH:flavin oxidoreductase/NADH oxidase family protein | SAPA_P0251
 |  |  |  |  |  |  |  | Carboxymuconolactone decarboxylase | SAPA_P0253