Spreadsheet: 0145a1b0-91e2-424e-8714-c3e76bbca00a
Sheet: Sheet1

Supplemental File 1: GreenCut proteins | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11
frozen catalog model protein ID | JGI updated model protein ID (link to protein page) | protein family (cluster) ID | name | [NAME] | Arabidopsis locus (link to TAIR) | Chlamy ESTs | P predicted, X experimental | Location, B = membrane, C = chloroplast, D = endosome, ER = endoplasmic reticulum, G = Golgi, L = lumen, M = mitochondrion, P = plasma membrane, S = stroma, T = thylakoid membrane, U = nucleus, iV = inner envelope, oV = outer envelope, X = peroxisome, Y= cytoplasm, blank = not known, no prediction | Function U or K for unknown or known, P = motif, domain or activity predicted, I = inferred | [NAME] Post-4/07 freeze | identified by [NAME] in cyanobacterial genome core
187094 |  | 5707704 | LCYE | lycopene epsilon cyclase, putative chloroplast precursor | At5g57030 | yes | X | C | K
193086 |  | 5707594 | RBCMT1 | ribulose-1,5 bisphosphate carboxylase oxygenase large subunit N-methyltransferase, putative [[NAME]] | At1g14030 | yes | P | C | K
105530 | 138922 | 5708627 | PRORS1 | organellar class II (G, H, P and S) aminoacyl tRNA synthetase | At5g52520 | yes | X | C/M | K
196673 | 187308 | 5706588 | OHP1 | low CO2 and stress-induced one-helix protein | At1g34000 | yes | X | T | K
105908 | 205760 | 5707055 | [NAME] | dihydropicolinate (DAP) reductase | At3g59890 | no | P | C | K
186597 |  | 5707074 | APX1 | ascorbate peroxidase | At1g77490 | yes | X | T | K
153656 |  | 5707261 | PSBQ | [NAME] evolving enhancer 3,OEE3 | At4g05180 | yes | X | L | K
189624 |  | 5708869 | PTOX1 | alternative oxidase, possibly chloroplast-localized | At4g22260 | yes | X | T | K
130292 | 205741 | 5709232 | [NAME] | Glycerol-3-phosphate acyltransferase, chloroplast precursor | At1g32200 | yes | X | S | K
195947 |  | 5709844 | HMOX1 | Heme oxygenase | At1g69720 | yes | P | C | K
196775 |  | 5705132 | SUFD | iron-sulfur cluster assembly protein | At1g32500 | yes | X | C | K
195556 | 195553 | 5705722 | [NAME] | Ferredoxin-NADP reductase, chloroplast | At4g05390 | yes | X | S | K
128415 |  | 5705802 | TAB2 | conserved chloroplast PsaB [NAME] binding protein | At3g08010 | yes | X | S | K |  | yes
113617 | 182653 | 5705826 | THF1 | conserved expressed chloroplast-localized protein similar to Arabidopsis Thylakoid Formation1 | At2g20890 | yes | X | T | K |  | yes
129557 |  | 5706628 | DPA1 | LL-diaminopimelate aminotransferase, putative | At4g33680 | yes | X | S | K
130316 |  | 5706989 | PSBO | Oxygen-evolving enhancer protein 1 of photosystem II, chloroplast precursor | At5g66570 | yes | X | T/L | K |  | yes
196500 |  | 5707144 | DLA2 | dihydrolipoamide acetyltransferase, possibly plastidic | At1g34430 | yes | P | C | K
194448 |  | 5707908 | APE1 | homolog of Arabidopsis APE1 that is required for acclimation of photosynthesis to various light intensity | At5g38660 | yes | X | T | K |  | yes
196518 | 205763 | 5708531 | [NAME] | dihydrolipoamide dehydrogenase, plastid precursor, putative | At4g16155 | no | P | C | K |  | yes
134594 |  | 5709272 | CHLD | Magnesium chelatase subunit D, chloroplast precursor | At1g08520 | yes | X | C | K
195910 |  | 5709595 | PRK | Phosphoribulokinase, chloroplast precursor | At1g32060 | yes | X | T | K
132194 |  | 5709835 | UROD1 | Uroporphyrinogen-III decarboxylase, chloroplast precursor | At2g40490 | yes | P | C | K
55336 |  | 5705127 | CLPP5 | active subunit of the chloroplast ClpP complex | At1g02560 | yes | X | T/S | K
78983 | 196952 | 5706992 | SNE1 | sugar nucleotide epimerase | At5g28840 | yes | P |  | K
127079 |  | 5709570 | PGR5 | thylakoid membrane protein | At2g05620 | yes | X | T | K
79446 |  | 5707319 | FKB16-3 | peptidyl-prolyl cis-trans isomerase, FKBP-type | At2g43560 | yes | X | L | KI
32852 |  | 5707923 | FKB19 | peptidyl-prolyl cis-trans isomerase, FKBP-type | At5g13410 | yes | X | L | KI
191582 | 205877 | 5708642 | PSBP2 | lumenal PsbP-like protein | At2g28605 | yes | P | L | KI
196558 |  | 5706467 | CYN38 | Peptidyl-prolyl cis-trans isomerase, [NAME] | At3g01480 | yes | X | L | KI
141254 |  | 5707081 | CPLD14 | conserved protein | At5g52540 | no | P | C | U
108052 | 154041 | 5705756 | CPLD13 | conserved expressed protein | At5g40500 | yes | P | C | U
154010 | 185795 | 5707800 | CPLD9 | conserved expressed protein | At2g38695 | yes | P | B | U
121991 | 205876 | 5709810 | CPLD20 | conserved expressed protein | At5g47860 | no | P | C | U |  | yes
122132 | 185598 | 5707211 | CPLD31 | conserved expressed protein | At5g52970 | yes | X | L | U |  | yes
127973 | 182934 | 5707415 | CPLD24 | conserved expressed protein, perhaps chloroplast targetted | At1g16080 | yes | P | C | U
121199 | 193550 | 5707522 | CPLD52 | conserved expressed protein | At2g39080 | yes | P | C | U
115563 | 183275 | 5707541 | CPLD28 | conserved expressed protein | At1g73070 | yes | P |  | U
183448 |  | 5708382 | TEF3 | unknown function, chloroplast location proposed | At4g11960 | yes | X | T | U
137516 | 205570 | 5709921 | CPLD18 | conserved expressed protein | At2g21960 | yes | P | C | U
184621 |  | 5708622 | CPLD33 | conserved expressed protein | At2g48070 | yes | P | C | U
105761 | 151387 | 5705796 | CPLD7 | conserved expressed protein of unknown function | At2g45990 | yes | P |  | U
184614 |  | 5710646 | CPLD1 | hypothetical protein with unknown function | At5g50100 | yes | P | M | U
118100 | 191167 | 5705021 | CPLD36 | conserved expressed protein | At1g64355 | yes | P | C | U |  | yes
169505 |  | 5706200 | CPLD47 | conserved expressed membrane protein | At4g19100 | yes | P |  | U |  | yes
193790 | 152648 | 5706548 | CPLD48 | conserved expressed protein | At3g60810 | yes | P | M | U
160068 | 206091 | 5707024 | CPLD42 | conserved expressed membrane protein | At1g54520 | yes | P | C | U
121963 | 185542 | 5707745 | CPLD38 | conserved expressed protein | At3g17930 | yes | X | T | U |  | yes
101763 | 183668 | 5707799 | CPLD5 | probably chloroplast targeted conserved expressed protein | At2g47840 | yes | P | C | U |  | yes
118702 | 184411 | 5710330 | CPLD39 | conserved expressed protein | At2g43945 | yes | P | C | U |  | yes
120574 | 185128 | 5709264 | CPLD51 | putative plastid protein | At3g26710 | yes | P | C | U | CCB1 | yes
582 | 151721 | 5705112 | CPLD3 | conserved expressed protein | At5g53580 | yes | P |  | U
188978 |  | 5705849 | CPLD12 | conserved expressed protein of unknown function | At5g27560 | yes | P | C | U |  | yes
121745 | 185467 | 5706036 | CPLD11 | conserved expressed protein | At3g19900 | yes | P | C | U |  | yes
105340 | 150826 | 5709235 | TEF9 | conserved expressed protein, possible chloroplast localization | At3g61870 | yes | X | iV | U
178204 |  | 5705630 | CPLD50 | conserved protein | At5g03900 | no | P | C | U
146442 |  | 5705373 | CPLD15 | conserved organelle protein with lipase active site | At5g17670 | yes | P | M | UP
117277 | 196953 | 5707780 | CPLD2 | conserved expressed protein with hydrolase motif | At3g48420 | yes | P | C | UP
140668 | 205488 | 5707142 | CPLD35 | conserved expressed flavin containing amine oxidase domain | At3g09580 | yes | P | C | UP
166701 |  | 5707567 | CPLD32 | conserved FAD dependent oxidoreductase | At2g22650 | no | P | M | UP
134003 |  | 5708525 | CPLD26 | conserved expressed protein related to pyridoxamine 5' phosphate oxidase | At2g46580 | yes | P | M | UP
119132 |  | 5708535 | CPLD27 | conserved expressed protein related to putative coclaurine N-methyltransferase | [NAME] | yes | P |  | UP
190093 | 146838 | 5709676 | CPLD17 | conserved expressed organelle-targeted protein, related to OTU-like cystein protease family | At3g57810 | yes | P | C/M | UP
193755 |  | 5709825 | CPLD21 | conserved expressed protein of the solute carrier family | At1g76340 | yes | P |  | UP
144907 |  | 5709825 | CPLD22 | conserved expressed membrane protein, related to putative transporters | At1g76340 | yes | P |  | UP
149680 |  | 5709825 | [NAME] | conserved, expressed membrane protein related to putative transporters | At1g76340 | yes | P |  | UP
116421 | 189893 | 5706016 | PP2C4 | conserved expressed protein in flagellar proteome related to protein phosphatase 2C | At1g79630 | yes | P |  | UP
113913 | 205878 | 5706840 | CPLD10 | conserved expressed protein | At1g16720 | yes | P | C | UP
116679 |  | 5708577 | CPLD46 | DEAD/DEAH-box helicase possibly plastid targeted | At1g70070 | no | P | C | UP
119827 | 205880 | 5705776 | CPLD4 | conserved expressed protein inositol monophosphatase-related | At4g39120 | yes | P | C | UP
107783 | 205604 | 5705143 | CPLD49 | saccharopine dehydrogenase-like protein | At1g50450 | yes | P | M | UP
122880 | 132949 | 5705312 | ARSA | putative arsenite translocating ATPase-like protein | At3g10350 | yes | P |  | UP
185063 |  | 5708249 | CPLD34 | conserved expressed protein related to ubiquinone / menaquinone biosynthesis methyltransferase | At4g29590 | yes | P | C | UP
10730 | 205779 | 5710032 | AKC2 | conserved protein related to ABC1/COQ8 putative ser/thr kinase | At4g24810 | no | P |  | UP
105237 | 205572 | 5705895 | CPLD25 | conserved expressed protein of the short-chain dehydrogenase/reductase family | At4g13250 | yes | P |  | UP | NYC1
164377 | 205755 | 5706772 | CPLD16 | conserved expressed protein, organelle-targeted, RNA methyl transferase related | At1g54310 | yes | P | M | UP
183051 |  | 5707972 | CPLD30 | Putative protein of unknown function, similar to hypothetical rice polypeptide | At5g17170 | yes | X | T | UP
153915 |  | 5708800 | CPLD53 | conserved expressed protein | At2g47970 | no | P | M | UP
108495 | 154497 | 5709254 | CPLD8 | conserved expressed protein | At5g21920 | yes | P | C | UP
100330 | 188875 | 5709546 | SOUL4 | conserved expressed protein with SOUL heme binding motif | At5g20140 | yes | X | T | UP
103242 | 205756 | 5710349 | CPLD19 | conserved expressed protein in the zing finger family | At3g60800 | no | P | M | UP
186610 |  | 5709991 | CPLD29 | conserved expressed protein | [NAME] | no | X | T | UP
187371 |  | 5706348 | CPLD45 | conserved expressed protein with possible function in PSII and possible lumen location | At1g03600 | yes | X | L | UP |  | yes
107288 | 178821 | 5706610 | CPLD41 | conserved expressed membrane protein | At4g35760 | yes | P | C | UP
101647 | 205830 | 5708018 | CPLD43 | YGGT family, conserved hypothetical integral membrane protein | At5g36120 | yes | P | C | UP | CCB3
139226 | 205743 | 5708201 | AKC3 | conserved expressed protein related to ABC1/COQ8 mitochondrial putative ser/thr kinase | At3g24190 | yes | P | C | UP
122683 | 205750 | 5710477 | CPLD37 | conserved expressed integral membrane protein | At1g78620 | yes | X | iV | UP
184818 |  | 5706622 | CPLD44 | conserved expressd thylakoid lumenal protein-like | At1g12250 | yes | X | T | UP
145444 | 205881 | 5706400 | PLAP2 | conserved expressed protein related to plastid lipid associated protein PAP | At3g26070 | yes | X | T | UP
107013 | 205882 | 5709050 | CPLD6 | conserved protein related to metal-dependent CAAX amino terminal protease family | At5g60750 | no | P | C | UP
113685 |  | 5706443 | AKC4 | conserved expressed ABC-1 like kinase | At5g64940 | yes | P | C | UP
147520 |  | 5707116 | CLPR4 | inactive subunit of chloroplast ClpP complex | At4g17040 | yes | X | S | K
195952 |  | 5707642 | DVR | 3,8-divinyl protochlorophyllide a 8-vinyl reductase, chloroplast precursor | At5g18660 | yes | X | C | K
39090 | 205922 | 5708078 | CCD1 | related to carotenoid 9,10-9',10' cleavage dioxygenase | At3g63520 | yes | X | Y | K
196553 |  | 5708985 | DGD1 | galactolipid galactosyltransferase | At3g11670 | yes | X | C/M | K
142479 |  | 5709516 | MSH1 | DNA mismatch repair MutS protein | At3g24320 | no | X | C/M | K
143831 |  | 5709793 | EFL1 | related to EDS5, enhanced disease susceptibility gene | At2g21340 | yes | P |  | K
184810 |  | 5707565 | LHCB4 | chlorophyll a-b binding protein of photosystem II | At2g40100 | yes | X | T | K
155150 |  | 5709062 | PSBW | Photosystem II subunit W, chloroplast precursor | At2g30570 | yes | P | C | K |  | yes
24036 | 168073 | 5709237 | LHCA4 | light-harvesting protein of photosystem I | At3g47470 | yes | X | T | K
14590 | 184171 | 5710150 | RPPK2 | ribose-phosphate pyrophosphokinase (RPPK) | At1g10700 | yes | P | C | K
135886 | 205753 | 5710858 | FAB2 | plastid acyl-ACP desaturase | At2g43710 | no | P | C | K
99751 | 182896 | 5706454 | PSB28 | Photosystem II subunit 28, chloroplast precursor | At4g28660 | yes | X | T | K |  | yes
11164 |  | 5705291 | HCF164 | Thioredoxin-like protein similar to Arabidopsis HCF164 | At4g37200 | yes | X | T | K
196222 | 205768 | 5709052 | GUN4 | Tetrapyrrole-binding protein, chloroplast precursor (Genomes uncoupled 4) (GUN4) | At3g59400 | yes | X | C | K
193583 | 205771 | 5708540 | EGY1 | conserved expressed protein related to membrane associated metalloprotease required for chloroplast development | At5g35220 | yes | X | C | K
188387 | 205568 | 5709566 | CSP41a | conserved expressed chloroplast [NAME] binding protein | At3g63140 | yes | X | C | KI
37663 |  | 5708031 | CYN28 | Peptidyl-prolyl cis-trans isomerase, [NAME] | At5g35100 | yes | P | C | KI
185878 | 205934 | 5710428 | [NAME] | maturation/stability factor for petA mRNA | At5g02860 | yes | P | C | KI
141399 | 205883 | 5709710 | CGLD1 | putative plastid protein | At1g64150 | yes | P | C | U
195705 |  | 5709241 | REX1B | Conserved Protein of Unknown Function | At5g04910 | yes | P |  | U
190046 |  | 5705203 | CGLD6 | conserved expressed protein | At3g50685 | yes | P | C | U
143294 |  | 5708371 | CGLD8 | Conserved protein, arabidopsis homolog is related to arabidopsis cyclin delta-3 | At2g23370 | no | X | M | U
179251 |  | 5708881 | CGLD11 | conserved protein | At2g21385 | no | P | C | U
167973 | 205923 | 5709806 | CGLD14 | conserved protein in diatoms and the green lineage | At1g76450 | yes | X | L | U
158544 | 163712 | 5705622 | CGLD16 | conserved expressed protein | At2g05310 | yes | P | C | U
117443 | 205927 | 5708850 | CGLD19 | expressed protein conserved in green lineage and diatoms | At2g35610 | yes | P | M | U
79776 | 205928 | 5710059 | CGLD20 | conserved protein with COG5222 RING zinc finger domain | At5g47430 | yes | P |  | U
169161 | 205932 | 5710265 | CGLD21 | conserved protein | At1g27510 | yes | P | C | U
102133 | 146879 | 5708767 | CGLD22 | conserved expressed protein | At2g31040 | yes | P | C | U |  | yes
118123 | 205823 | 5710906 | CGLD23 | conserved expressed protein | At1g59840 | no | P | M | U | CCB4 | yes
122264 | 82483 | 5705809 | CGLD25 | conserved expressed protein | At2g04360 | yes | P | C | U
148682 |  | 5707240 | CGLD26 | conserved expressed protein | At4g24090 | yes | P | C | U
44653 | 184984 | 5709072 | CGLD27 | conserved expressed protein | At5g67370 | yes | P | M | U |  | yes
187252 |  | 5709857 | CGLD28 | conserved expressed protein | At1g67080 | yes | X | V | U
107169 |  | 5708107 | CGLD29 | conserved protein of unknown function | At5g27290 | no | P | M | U
187910 |  | 5708434 | [NAME] | conserved expressed protein | At1g44920 | yes | P | C | U
171897 |  | 5706717 | CGLD2 | conserved protein, related to thioesterase family | At5g48370 | no | P | C | UP
144028 |  | 5709127 | CGLD3 | conserved protein with DEAD/DEAH box helicase domain and proline rich domain | At1g59990 | no | P | C | UP
182736 |  | 5709334 | CGLD4 | conserved expressed protein with ABC transporter motifs | At1g03905 | yes | P |  | UP
195890 |  | 5707643 | CITRX | [NAME] | At3g06730 | yes | P | C | UP
120927 | 131867 | 5707654 | CGLD7 | conserved, expressed esterase / lipase / thioesterase family protein | At5g38360 | yes | P | C | UP
196129 | 205754 | 5708809 | TRXL1 | conserved expressd thioredoxin-like protein, unusual active site WCNAC | At4g26160 | yes | P | C | UP
189909 |  | 5709030 | CGLD12 | protein with potential galactosyl transferase activity | At4g37690 | yes | P | D | UP
123134 | 205577 | 5709095 | CGLD13 | conserved protein related to nucleoside diphosphate sugar epimerase, putative chloroplast targeted | At4g31530 | yes | P | C | UP
190433 | 205924 | 5710340 | CGLD15 | conserved expressed protein related to triacylglycerol lipase | At3g62590 | yes | P |  | UP
142644 |  | 5707225 | MITC4 | putative mitochondrial carrier protein | At2g35800 | yes | P | M | UP
188559 |  | 5708306 | RNB2 | 3'-5' Exoribonuclease II | At5g02250 | yes | P | C | UP
190539 |  | 5705744 | CGLD24 | conserved expressed protein related to diacylglycerol acyl transferase | At3g51520 | yes | P |  | UP
107982 | 205919 | 5709335 | CGLD5A | conserved ethylene response element dna binding domain containing protein | At2g33710 | no | X | U | UP
75247 | 205920 | 5709335 | CGLD5B | AP2-domain transcription factor | At2g33710 | yes | X | U | UP
100030 | 205921 | 5707266 | TPR2 | conserved tetratricopeptide repeat protein, organelle-targetted | At3g05625 | no | P | C | UP
139332 |  | 5708358 | FAP173 | Conserved Uncharacterized Flagellar Associated Protein/ band 7 domain protein | At5g62740 | yes | P |  | UP
178960 | 153371 | 5708635 | CGLD30 | SET domain containing protein, putative histone methyltransferase | At4g15180 | no | P | U | UP
142077 |  | 5708874 | CGLD10 | conserved protein | At1g26760 | yes | P | C | UP
195571 |  | 5709344 | VDR1 | [NAME] related, chloroplast | At2g21860 | yes | P | C | UP
120332 |  | 5709408 | AKC1 | ABC1 family ser/thr kinase | At5g05200 | yes | P |  | UP
183765 | 205926 | 5705505 | PLAP3 | conserved expressed protein related to plastid lipid associated protein PAP | At4g00030 | yes | P | C | UP
154399 |  | 5705666 | CGLD17 | conserved protein related to Arabidopsis protein with Toprim domain | At1g30680 | no | P | M | UP
159133 |  | 5705768 | CGLD18 | conserved B-box zinc finger protein | At3g02380 | yes | P |  | UP
179586 | 21100 | 5708126 | SOUL5 | expressed protein conserved in photosynthetic organisms | At2g46100 | yes | P | C | UP
112947 | 205870 | 5705953 | GWD1 | R1 Protein, alpha-glucan water dikinase | At1g10760 | yes | P | M | K
30187 | 206003 | 5706169 | TIC110 | 110 kDa translocon at the inner membrane of chloroplasts | At1g06950 | yes | X | C | K
174358 |  | 5707301 | LPAAT1 | related to plastidic lysophosphatidic acid acyltransferase ([NAME]) | At4g30580 | no | X | C | K
193847 |  | 5708454 | PSAO | Photosystem I subunit O | At1g08380 | yes | X | C | K
115079 | 183141 | 5709118 | AMYB1 | beta-amylase | At3g23920 | yes | X | C | K
194013 | 205874 | 5710135 | CPL7 | conserved expressed protein related to GIF3 | At4g00850 | yes | P | U | K
196703 |  | 5709211 | FDX6 | Apoferredoxin, chloroplast precursor | At1g32550 | yes | P | C | K
195403 |  | 5705996 | VAMP72 | R-SNARE, VAMP72-family | At1g04750 | yes | X | D/P | KI
59842 |  | 5710052 | [NAME] | plant specific cyclin dependent kinase | At2g38620 | yes | P |  | KI
154342 |  | 5706493 | CPL1 | conserved expressed protein | At5g08450 | yes | P |  | U
143849 |  | 5708976 | CPL4 | hypothetical protein | At1g16870 | no | P | M | U
104223 | 205873 | 5709922 | CPL6 | conserved expressed protein | At5g61670 | yes | P | C | U
191988 | 149843 | 5710225 | TEF10 | conserved expressed protein | At1g67700 | yes | P | M | U
159383 | 205606 | 5705087 | CPL9 | conserved expressed protein of unknown function | At1g02470 | yes | P | C | U
183430 | 205879 | 5710154 | CPL10 | Conserved protein of unknown function | At1g28140 | yes | P | M | U
189732 |  | 5705310 | CPL11 | conserved expressed organellar protein involved in translation | At3g01920 | yes | P | M | U
137528 |  | 5706710 | MAPK2 | Mitogen-Activated Protein Kinase Homolog 2 | At1g73670 | yes | P | M | UP
181068 |  | 5707367 | [NAME] | conserved protein related to protein serine / threonine phosphatase | At1g07010 | no | P | C | UP
153736 |  | 5709002 | STPK25 | [NAME] related kinase, serine/threonine protein kinase | At3g13670 | yes | P | M | UP
177997 |  | 5709568 | CPL5 | conserved peptidase [NAME] family protein | At5g56730 | yes | P |  | UP
121874 | 152921 | 5711046 | [NAME] | protein phosphatase 2C-like | At2g40860 | yes | P |  | UP
151947 |  | 5706325 | RTB1 | related to reticulon | At2g46170 | yes | P | ER | UP
152228 |  | 5707250 | [NAME] | conserved protein related to riboflavin biosynthesis protein RibF | At5g08340 | no | P |  | UP
188447 | 205871 | 5707326 | CPL2 | conserved, expressed, transcription factor like protein | At4g32890 | yes | P | U | UP
190008 |  | 5709319 | PLAP1 | conserved expressed protein related to lipid associated plastid protein, PAP | At2g46910 | yes | P | C | UP
105401 | 205875 | 5710136 | CPL8 | conserved expressed protein | At3g21140 | yes | P | C | UP
116298 | 205993 | 5711272 | TEF30 | conserved expressed protein, SHOOT1 homolog | At1g55480 | yes | X | T | UP
182996 |  | 5709782 | CLPP4 | active subunit of chloroplast ClpP peptidase | At5g45390 | yes | X | T/S | K
162226 | 183277 | 5710856 | SSS2 | soluble starch synthase II, ADP-glucose alpha-1,4 glucane alpha-4-glucanotransferase | At3g01180 | yes | P | C | K
145657 |  | 5711029 | CYC4 | cytochrome c, chloroplast precursor | At5g45040 | no | P | C | K
128745 |  | 5704999 | [NAME] | [NAME] | At2g39730 | yes | X | S | K
174723 | 184471 | 5705036 | LHCA1 | light-harvesting protein of photosystem I | At3g54890 | yes | X | T | K
196431 |  | 5706145 | TAL2 | Transaldolase, plastid form, putative | At1g12230 | yes | P | C | K
181975 |  | 5706166 | GSH1 | [NAME] synthetase | At4g23100 | yes | X | C | K
157805 | 205886 | 5706384 | CDSP32 | CDSP32, plastidic thioredoxin-like protein | At1g76080 | yes | X | C | K
132552 | 205887 | 5706711 | [NAME] | 3-ketoacyl-CoA-synthase component of plastidic multimeric fatty acid synthase | At5g46290 | yes | X | C | K
153678 |  | 5706791 | LHCA3 | light-harvesting chlorophyll-a/b protein of photosystem I (Type III) | At1g61520 | yes | X | T | K
13382 |  | 5707640 | TOC159 | Similar to 159 kDa translocon at the outer membrane of chloroplasts | At2g16640 | yes | X | oV | K
165416 |  | 5708030 | PSAG | photosystem I reaction center subunit V, chloroplast precursor | [NAME] | yes | X | T | K
190221 | 183767 | 5708244 | CLPR1 | inactive subunit of chloroplast ClpP complex | [NAME] | yes | X | T | K
169838 | 205893 | 5708248 | [NAME] | conserved expressed protein related to maltose exporter, RCP1 | At5g17520 | yes | X | iV | K
113331 |  | 5708789 | OKL1 | conserved ser/thr protein kinase related to OST1 of Arabidopsis | At4g33950 | no | P |  | K
99594 | 144221 | 5708877 | CGL28 | conserved expressed putative RNA binding protein | [NAME] | yes | P |  | K
192398 |  | 5709063 | PWD1 | phosphoglucan water dikinase | At5g26570 | yes | X | C | K
196599 | 205899 | 5709096 | [NAME] | Amidase | At1g08980 | yes | X | Y | K
169967 |  | 5709219 | HY5 | putative bZIP transcription factor | At5g11260 | no | X | U | K
176977 | 205943 | 5709310 | CGL37 | conserved protein related to shikimate kinase | At2g35500 | yes | X | C | K
80866 | 192083 | 5709407 | MDH5 | NADP-Malate Dehydrogenase | At5g58330 | yes | X | C | K
140500 | 154398 | 5709441 | HSP90C | Heat shock protein 90C | At2g04030 | yes | X | C | K
186790 | 205903 | 5709538 | LHCBP1 | chlorophyll a-b binding protein, chloroplast precursor | At1g76570 | yes | P | T | K
172432 | 205655 | 5709628 | TOM20 | Mitochondrial translocase of outer membrane, 20 kDa | [NAME] | yes | X | M | K
142899 |  | 5709700 | MER | conserved protein with DEAD/DEAH box helicase domain related to MER3 | At3g27730 | no | P |  | K
113634 | 30522 | 5709746 | ADCL1 | aminotransferase related to 4-amino-4-deoxychorismate lyase | At5g57850 | yes | P | C | K
183027 |  | 5709759 | TIC40 | related to chloroplast protein translocon component Tic40 precursor | At5g16620 | yes | X | iV | K
187332 |  | 5709925 | CGL55 | conserved protein related to cleavage and polyadenylation factor 6 | At2g33540 | yes | X | U | K
123555 | 186089 | 5709932 | RCA2 | Similar to RuBisCO activase (RCA) | At1g73110 | yes | X | S | K
182959 |  | 5710113 | PSAH | Subunit H of photosystem I | At3g16140 | yes | X | T | K
118898 | 205910 | 5710220 | APX2 | putative L-ascorbate peroxidase | At4g32320 | yes | P | C | K
111002 | 205530 | 5710290 | PSBY2 | ycf32-related polyprotein of photosystem II | At1g67740 | yes | X | T | K
168074 | 182560 | 5710290 | PSBY1 | Ycf32-related subunit of photosystem II | At1g67740 | yes | X | T | K
193552 | 185309 | 5710305 | LHL3 | low molecular mass early light-induced protein | At4g17600 | yes | X | T | K
196341 |  | 5710467 | PSBS1 | chloroplast Photosystem II-associated 22 kDa protein | At1g44575 | yes | X | T | K
116665 | 171516 | 5710467 | PSBS2 | chloroplast Photosystem II-associated 22 kDa protein | At1g44575 | no |  |  | K
167738 | 205912 | 5710475 | RPI2 | ribose-5 phosphate isomerase-related protein | At5g44520 | yes | P | S | K
148916 |  | 5710509 | [NAME] | Early light-inducible protein | At4g14690 | yes | X | T | K
195512 |  | 5710545 | TOC75 | 75 [NAME] translocon at the outer envelope membrane of chloroplasts | At3g46740 | yes | X | oV | K
116544 | 205633 | 5710571 | [NAME] | triose phosphate translocator | At5g46110 | yes | X | iV | K
196283 |  | 5710596 | FAT1 | acyl carrier protein thioesterase, putative | At3g25110 | yes | X | S | K
120159 | 205637 | 5710633 | [NAME] | zinc-finger protein Lsd1 | At4g20380 | yes | X | Y | K
187891 | 205913 | 5710702 | STA1 | ADP-glucose pyrophosphorylase large subunit | At5g19220 | yes | X | C | K
194793 |  | 5710812 | [NAME] | Chloroplast protein kinase required for state transitions | At1g68830 | yes | X | C | K
187188 | 205915 | 5711123 | LCI20 | Putative 2-oxoglutarate/malate translocator | At5g64290 | yes | P | C | K
136037 |  | 5705101 | [NAME] | ADP-glucose pyrophosphorylase small subunit | At5g48300 | yes | X | C | K
82986 |  | 5705899 | RBCS1 | ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 1, chloroplast precursor | At1g67090 | yes | X | S | K
60238 |  | 5705899 | RBCS2 | ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit 2,chloroplast precursor | At1g67090 | yes | X | S | K
120177 | 184971 | 5705906 | PSAD | Photosystem I reaction center subunit II, 20 kDa | At1g03130 | yes | X | T | K |  | yes
130914 |  | 5706419 | PSAF | photosystem I reaction center subunit III, chloroplast precursor | At1g31330 | yes | X | T | K |  | yes
58334 |  | 5706509 | FTSH2 | membrane AAA-metalloprotease, chloroplast | At2g30950 | yes | X | T | K
147787 |  | 5707952 | PETF | Apoferredoxin, chloroplast precursor | At1g60950 | yes | P | C | K
99956 | 205935 | 5708618 | PSAL | Photosystem I reaction center subunit XI | At4g12800 | yes | X | T | K |  | yes
128002 | 205856 | 5708969 | CTH1 | Copper target homolog 1, chloroplast precursor, functional variant | At3g56940 | yes | X | T/iV | K
140452 |  | 5708981 | STA11 | 4-alpha-glucanotransferase | At5g64860 | yes | X | C | K
76146 |  | 5710097 | PSAE | photosystem I 8.1 kDa reaction center subunit IV | At2g20260 | yes | X | T | K |  | yes
195343 |  | 5710878 | CCS1 | c-type cytochrome synthesis 1 | At1g49380 | yes | X | T | K
58407 | 205944 | 5705194 | [NAME] | chloroplast division site-determinant MinE | At1g69390 | yes | X | C | K
196011 | 205938 | 5705280 | CTP2 | heavy metal transporting ATPase (HMA), P-type ATPase superfamily, membrane protein | At5g21930 | no | X | T | K
192478 |  | 5706435 | PSAK | photosystem I reaction center subunit psaK, chloroplast precursor | At1g30380 | yes | X | T | K |  | yes
178067 |  | 5710773 | TGD2 | related to a permease-like component of an ABC transporter involved in lipid transfer from ER to chloroplast | At3g20320 | no | X | iV | K
195951 |  | 5709624 | CAO | Chlorophyll a oxygenase, chloroplast precursor | At1g44446 | yes | X | T | K
115641 |  | 5709014 | PRMT3 | Protein arginine N-methyltransferase, ChromDB PRMT3403 | At3g12270 | no | P |  | KI
139925 |  | 5705554 | FKB17-2 | peptidyl-prolyl cis-trans isomerase, FKBP-type | At1g18170 | yes | X | T | KI
148057 | 33411 | 5705619 | PSBP1 | [NAME] Enhancer 2 of photosystem II | At1g06680 | yes | X | L | KI
170734 |  | 5706157 | RAD9 | DNA damage checkpoint protein | At3g05480 | no | P | M | KI
37152 | 205890 | 5707139 | CYN23b | conserved expressed protein cyclophilin type, alternatively spliced form B | At1g26940 | yes | P | D | KI
127879 |  | 5707181 | [NAME] | conserved expressed lumen targeted protein related to OEE2 protein | At5g11450 | yes | X | L | KI
149307 | 184451 | 5708551 | PSBP9 | PsbP-like protein of PSII | [NAME] | yes | X | L | KI
193859 |  | 5708792 | FKB16-4 | peptidyl-prolyl cis-trans isomerase, FKBP-type | At3g10060 | yes | X | L | KI
100415 | 205898 | 5708843 | CYN37 | Peptidyl-prolyl cis-trans isomerase, [NAME] | At3g15520 | yes | X | T/L | KI
156074 |  | 5709051 | FKB18 | peptidyl-prolyl cis-trans isomerase, FKBP-type | At1g20810 | yes | X | L | KI
104731 | 205916 | 5709488 | PSBP4 | lumenal PsbP-like protein | At4g15510 | no | X | L | KI
196705 |  | 5709748 | [NAME] | Apoferredoxin, chloroplast precursor | At4g14890 | yes | P | C | KI
188000 |  | 5710057 | FKB20-2 | peptidyl-prolyl cis-trans isomerase, FKBP-type | At3g60370 | yes | X | L | KI
176 |  | 5710400 | ERD2B | KDEL Receptor B | At1g19970 | no | P | ER | KI
30719 |  | 5710576 | [NAME] | Peptidyl-prolyl cis-trans isomerase, [NAME] | At1g74070 | yes | P | L | KI
142309 |  | 5707918 | CEM1 | putative proton extrusion protein cemA, chloroplastic | At4g31040 | yes | P | C | KI
115135 |  | 5708183 | SYK1 | putative tRNA synthetase class II (D, K and N) family protein | At3g13490 | no | X | C/M | KI
183308 | 162260 | 5707776 | CGL1 | conserved expressed protein of unknown function | At2g20920 | yes | P | C | U
97676 | 142225 | 5709778 | CGL81 | conserved expressed protein of unknown function | At5g04440 | yes | P | C | U
187386 | 182434 | 5705069 | [NAME] | conserved expressed protein | At2g17972 | yes | X | T | U
178040 | 205579 | 5705095 | CGL4 | conserved expressed protein | At3g58800 | yes | P | M | U
131754 | 205884 | 5705147 | CGL5 | conserved expressed protein | At1g64680 | yes | P | M | U
166032 | 205885 | 5705652 | CGL6 | unknown function | At5g11960 | yes | P |  | U
155494 |  | 5706349 | CGL9 | conserved expressed protein | At1g19360 | yes | P | M | U
162817 |  | 5706744 | CGL10 | conserved expressed protein | At5g05360 | yes | P | C | U
193961 | 206051 | 5706767 | CGL11 | conserved expressed protein of unknown function | At4g24930 | yes | X | L | U
163196 | 184127 | 5706820 | CGL12 | conserved expressed protein | At5g39790 | yes | P | M | U
189798 |  | 5706832 | CGL13 | conserved expressed protein | At1g08030 | yes | P | M | U
145947 |  | 5708027 | CGL16 | conserved protein | At1g07040 | no | P | C | U
185270 |  | 5708074 | CGL17 | conserved expressed protein | At1g50020 | yes | X | T | U
191999 | 205653 | 5708231 | CGL18 | conserved expressed protein of unknown function | At5g55570 | yes | P | C | U
193846 |  | 5708436 | CGL20 | conserved expressed protein of unknown function | At2g17240 | yes | P | C | U
174967 | 206053 | 5708582 | CGL21 | conserved protein of unknown function | At5g08540 | yes | X | T/V | U
154373 |  | 5708649 | CGL23 | conserved expressed protein | At1g74530 | yes | P | M | U
172656 |  | 5708652 | CGL24 | conserved protein of unknown function | At1g28100 | no | P |  | U
101500 | 205896 | 5708811 | CGL25 | conserved hypothetical protein | At5g13500 | yes | P | D | U
175106 | 205897 | 5708813 | CGL26 | conserved expressed protein | At4g29520 | yes | P | D | U
168688 |  | 5708844 | CGL27 | conserved expressed protein of unknown function | At1g62780 | yes | P | C | U
167685 |  | 5709055 | CGL29 | conserved protein of unknown function | At3g55760 | no | P | C | U
157731 | 205900 | 5709109 | CGL30 | conserved expressed protein | At1g77090 | yes | X | L | U
186351 | 160683 | 5709179 | CGL32 | conserved expressed protein of unknown function | At3g57280 | yes | X | iV | U
117853 | 184125 | 5709207 | CGL34 | conserved expressed protein of unknown function | At5g24690 | yes | X | iV | U
187792 | 182630 | 5709309 | CGL36 | conserved expressed protein of unknown function | At3g10405 | yes | P | C | U
117798 | 190875 | 5709352 | CGL38 | conserved expressed protein of unknown function | At1g50900 | yes | P | C | U
148272 | 205902 | 5709379 | CGL39 | conserved expressed protein of unknown function | At5g27710 | yes | P | D | U
186576 |  | 5709522 | CGL40 | conserved expressed protein of unidentified function | At1g49975 | yes | P | C | U
162607 |  | 5709610 | CGL41 | conserved expressed protein of unknown function | At4g04330 | yes | P | C | U
151791 | 205904 | 5709615 | CGL42 | conserved expressed protein of unknown function | At5g48790 | yes | P | C | U
176794 |  | 5709684 | CGL46 | conserved expressed protein of unknown function | At5g65440 | no | P |  | U
190282 |  | 5709895 | CGL52 | conserved expressed protein of unknown function | At1g65230 | yes | P | C | U
155280 | 205907 | 5709903 | CGL54 | conserved expressed protein of unknown function | [NAME] | yes | P | C | U
182361 |  | 5710094 | TEF14 | putative thylakoid lumenal protein | At4g02530 | yes | X | L | U
191642 | 158401 | 5710131 | CGL59 | conserved expressed protein | At5g44650 | yes | X | T | U
93364 | 205909 | 5710143 | CGL60 | conserved expressed protein of unknown function | At4g25660 | yes | P |  | U
144728 | 205911 | 5710298 | CGL61 | conserved expressed protein of unknown function | At4g22920 | no | P | C | U
144132 |  | 5710389 | CGL63 | conserved expressed protein of unknown function | At4g26410 | yes | P |  | U
196478 | 196477 | 5710502 | [NAME] | [NAME] Low Photochemical Bleaching 1 protein | At3g56040 | yes | P | C | U
187487 |  | 5710717 | CGL64 | conserved expressed protein | At3g19340 | yes | P |  | U
111993 | 182181 | 5711454 | CGL68 | Acid phosphatase/vanadium-dependent haloperoxidase related, DUF212 | At1g67600 | yes | P | D | U
196285 |  | 5706534 | CGL70 | conserved expressed protein of unknown function | At5g08400 | yes | P | C | U |  | yes
172512 | 205936 | 5709382 | CGL83 | conserved expressed protein of unknown function | At3g61770 | yes | P | C | U
94227 | 205937 | 5705110 | CGL73 | expressed protein conserved in the green lineage | At3g51140 | yes | X | iV | U
180279 |  | 5705322 | [NAME] | conserved expressed tpr repeat protein | [NAME] | no | X | T | U
114879 | 162021 | 5708641 | CGL78 | conserved expressed protein of unknown function | At5g58250 | yes | P | C | U
166730 |  | 5710953 | CGL80 | conserved protein of unknown function | At1g08530 | no | P | C | U
120035 | 205894 | 5708383 | CGL19 | conserved expressed protein with Dof type zinc finger | At2g34140 | yes | P |  | UP
195615 |  | 5710501 | GRX6 | [NAME], CGFS type, probably chloroplastic | At2g38270 | yes | P | C | UP
172865 |  | 5706882 | PP2C6 | protein phosphatase type 2C | At1g68410 | no | P |  | UP
157262 |  | 5709435 | TRX10 | Thioredoxin-like protein, unusual active site WCTKC | At3g53220 | yes | P |  | UP
191951 |  | 5709625 | CGL43 | Putative RNA binding protein with S1 domain | At3g23700 | yes | P | C | UP
78189 |  | 5709734 | CGL49 | ARF/SAR superfamily small monomeric GTP binding protein | At5g17060 | yes | P |  | UP
99082 |  | 5709854 | EFG4 | GTP-binding elongation factor-like protein, similar to yeast Hbs1p | At5g10630 | no | P |  | UP
122546 | 153782 | 5709880 | CGL51 | conserved expressed protein related to sugar phosphate/phosphate translocator | At5g17630 | yes | P | C | UP
116397 | 205906 | 5709898 | CGL53 | conserved protein related to carbohydrate hydrolase | At2g20680 | no | P | D | UP
167017 |  | 5711558 | CGL69 | conserved protein with lipase motif | At3g07400 | yes | P | M | UP
178217 |  | 5706431 | CGL75 | conserved protein with methyltransferase motif | At5g64150 | no | P | C | UP
157632 | 205939 | 5706797 | CGL76 | conserved expressed protein with epoxide hydrolase / esterase motif | At1g52510 | yes | P | C | UP
104299 | 205940 | 5707941 | SNE3 | NAD-dependent epimerase/dehydratase | At4g20460 | yes | P | D | UP
190827 |  | 5710587 | [NAME] | putative methyltransferase | At3g01660 | yes | P | M | UP
120386 |  | 5705774 | CGL7 | conserved protein of unknown function related to chloroplast P translocator | At1g21070 | no | P | B | UP
166663 | 205638 | 5706161 | CGL8 | SPX containing protein | At5g20150 | yes | P |  | UP
77597 | 205888 | 5707134 | CGL14 | conserved expressed protein related to pantothenate kinase family | At4g35360 | yes | P |  | UP
117924 | 205891 | 5707556 | CGL15 | conserved expressed permease of the major facilitator superfamily | At5g20380 | yes | P | B | UP
195501 |  | 5707906 | SEC12 | regulator of COP-II vesicle coat | At5g50550 | yes |  |  | UP
145283 |  | 5708634 | CGL22 | cdc48-like protein | At2g03670 | no | P |  | UP
183721 | 205901 | 5709154 | CGL31 | conserved expressed protein with pterin carbinolamine dehydratase domain | At5g51110 | yes | P | C | UP
142662 |  | 5709193 | CGL33A | conserved methyltransferase of unknown function | At5g63100 | no | P | M | UP
142678 |  | 5709193 | CGL33B | conserved methyltransferase of unknown function | At5g63100 | no | P | M | UP
144101 | 205630 | 5709217 | CGL35 | conserved expressed protein of unknown function | At4g17760 | yes | P | U | UP
132449 |  | 5709240 | CGL82 | Conserved, expressed protein with meprin and TRAF homology domain | At5g43560 | yes | P |  | UP
170340 | 205640 | 5709603 | HEP2 | Hsp70 escorting protein 2 | At5g27280 | yes | P | C | UP
172469 |  | 5709663 | CGL44 | RabGAP/TBC Domain Protein | At5g53570 | no | P | C | UP
144926 |  | 5709668 | CGL45 | expressed protein conserved in the green lineage | At1g11800 | yes | P | M | UP
171590 |  | 5709693 | CGL47 | conserved protein with F-box domain | At5g45360 | no | P |  | UP
116762 |  | 5709718 | CGL48 | conserved protein related to lysine decarboxylase domain | At1g50575 | no | P | C | UP
144505 | 205639 | 5709721 | PLAP4 | conserved expressed protein related to plastid lipid associated protein PAP | At5g19940 | yes | X | iV | UP
161769 |  | 5709745 | CGL50 | conserved expressed protein of unknown function | At4g09620 | yes | P | C | UP
167673 |  | 5709941 | CGL56 | conserved expressed protein | At3g59780 | yes | P |  | UP
178070 |  | 5710013 | CGL57 | conserved expressed protein | At2g31140 | no | P | M | UP
149808 | 205908 | 5710021 | CGL58 | conserved expressed protein | At2g01810 | yes | P |  | UP
194876 |  | 5710111 | TIM22B | translocase of inner mitochondrial membrane 22 homolog | At5g24650 | yes | X | M/C | UP
172486 |  | 5710341 | [NAME] | putative cell cycle associated protein | At1g67270 | no | P |  | UP
174855 | 205914 | 5710771 | CGL65 | conserved expressed protein | At1g69210 | no | P | M | UP
148832 | 205917 | 5711124 | CGL66 | conserved expressed protein | At4g38640 | yes | P |  | UP
189296 | 145554 | 5711125 | CGL67 | Mpv17/PMP22 family protein with unknown function | At2g42770 | yes | P | X | UP
192099 |  | 5711472 | [NAME] | Rieske [2Fe-2S] domain, putative, chloroplast location proposed | At1g71500 | yes | X | T | UP
184916 |  | 5707937 | [NAME] | conserved TPR repeat protein related to YCF37 | At1g22700 | yes | X | T | UP |  | yes
96690 | 140949 | 5710543 | CGL72 | conserved expressed protein with hemolysin motif and [NAME] methyltransferase motif | At3g25470 | no | P | M | UP
148091 |  | 5707836 | CGL77 | conserved protein with unknown function | At1g60990 | no | P | Y | UP
169453 |  | 5709802 | CGL79 | conserved protein with carbohydrate kinase motif | At1g19600 | yes | P |  | UP
CPLD goes to 53 and stands for [NAME] in the Plant Lineage and Diatoms = in green + Cme + 1 diatom
CGL goes to 83 and stands for [NAME] in the Green Lineage = in only green
CPL goes to 11 and stands for [NAME] in the Plant Lineage = in green + Cme
CGLD goes to 30 and stands for [NAME] in the Green Lineage and Diatoms = in green + 1 diatom