Spreadsheet: 458cca6b-6689-4a73-a8ff-15dea5061bd8
Sheet: Sheet1

Log2 ratios of RNA-seq and qPCR data relative to the zero hour control.
RNA-Seq log 2 ratios
 | 3hr | 6hr | 12hr | 1d | 3d | 5d | 7d | 10d | 14d | 21d | 28d
ATF3 | 5.484276952 | 4.199843012 | 1.264689185 | 2.315311212 | 0 | 0 | 0 | 0 | 0 | 2.602746415 | 1.283442442
CDH6 | 0.03920317 | 0.084465263 | -0.332253582 | -0.564556717 | -0.173010022 | 1.257234153 | 2.835500965 | 3.378065519 | 2.936065609 | 0.819199752 | 0.563050029
EGR1 | 4.280035926 | 3.943214743 | 2.052571225 | 1.30086358 | 0.134020931 | -0.707129367 | 0.016078712 | -0.334977057 | -1.196133856 | 0.9626161 | 0.120374073
FOS | 6.990170816 | 5.099298017 | 2.856103205 | 3.378358017 | 1.828233836 | 2.046000426 | 1.766255427 | 0.542816715 | -0.939371347 | 1.947376937 | -0.060391931
GLI3 | -0.124804058 | -0.06020077 | 0.174026597 | -0.064932844 | 0.641668838 | 0.476171212 | 1.120642398 | 2.60108261 | 2.741333273 | 0.654100409 | 0.427946133
HIF3A | 1.342372187 | 3.068575415 | 2.570583827 | 2.133490421 | -0.23424913 | -0.063009181 | -1.442473432 | 0.734600338 | 0.68946609 | 0.148973165 | -0.435860424
HMGA2 | -0.284048561 | -0.161306706 | 0.209741224 | 0.42738251 | 0.920070337 | 0.85089879 | 1.19171302 | 1.999869771 | 2.262646973 | 0.949639538 | 0.443232623
HOXD10 | 0.361770488 | -0.149278703 | -0.462863407 | -0.484260586 | 0.572107876 | 2.678004052 | 3.66336423 | 4.035193818 | 2.215785424 | 1.195217733 | 0.609011799
JUND | 2.717099061 | 3.115035114 | 1.764555019 | 1.814664597 | 0.548757068 | 0.413522675 | 0.544885673 | 0.444628161 | 0.035672981 | 1.149059521 | 0.636768902
KLF4 | 3.116247707 | 3.266302543 | 1.519687782 | 0.76310408 | -0.161247253 | 0.08965484 | -1.998929378 | -0.942210504 | -0.819211681 | 1.539354222 | 0.899056284
LMO1 | -1.17859612 | -1.17859612 | 0.27911626 | 0.397171734 | 0.588356043 | 0.419474937 | 1.431855105 | 1.705804827 | 3.051126112 | 1.419525298 | 0.565653314
MECOM | -0.061706231 | 0.095931259 | -0.50344941 | -0.200122152 | 0.416472422 | 2.421831913 | 3.931803145 | 5.466430424 | 5.159093916 | 2.892647432 | 1.490601611
NR4A2 | 4.666382088 | 3.853457254 | 2.176949177 | 1.309083224 | 0.096011226 | -0.625633528 | -0.042828896 | -0.318877395 | -0.431857719 | 1.410344419 | 0.6859615
PRRX1 | -0.861898072 | -0.544065724 | -0.698950798 | -0.771944436 | 1.886583936 | 2.765801778 | 3.231857122 | 3.77122571 | 3.157502623 | 1.347138777 | 0.965889464
SALL1 | 0.112701313 | 0.366207674 | 0.666346992 | 0.724435679 | 1.35448313 | 1.809263238 | 3.59282607 | 4.660558814 | 4.519068572 | 2.256457884 | 1.261092625
SALL3 | 0.119591155 | 0 | 0 | 0 | 0.22976973 | 0.390119377 | 1.047236459 | 1.71430248 | 2.817323245 | 0 | 0.348813936
SALL4 | 0 | 0.957855027 | 0.525617331 | 2.270486361 | 2.438087376 | 2.811745893 | 3.280717074 | 2.32659548 | 1.858853918 | 0.136688167 | 0
SHH | 0 | 0 | 0 | 0 | 0 | 0 | 2.987062236 | 4.199893006 | 3.236861932 | 0 | 0
TNN | 0.160754571 | 0.095443947 | 0 | 0.170711678 | 0.091278249 | 0.219460104 | 0.637404029 | 2.352549833 | 3.239347566 | 0.929433592 | 0.493317599
qPCR log 2 ratios
 | 3hr | 6hr | 12hr | 1d | 3d | 5d | 7d | 10d | 14d | 21d | 28d
ATF3 | 14.90590969403889 | 9.141414058881216 | 5.145682488439628 | 2.567371327774751 | -2.755654283550975 | -1.848309766458288 | 3.222751221631232 | 2.546368900628105 | 4.057074880130226 | 4.227050395840942 | 4.016708225198025
CDH6 | -1.693962500721163 | 0.0849719541202308 | -0.1170028965141328 | -1.218508015570918 | -3.044742995813822 | -0.9562706713449066 | 2.096566949520154 | 4.103573934799201 | 5.952203291553907 | 4.853940996338119 | 2.656271449534378
EGR1 | 7.838751258169323 | 3.431003774900097 | 1.930812608061525 | -0.09206106348597956 | -1.345483894719415 | -1.382603683883664 | 1.329841227490909 | 1.546935898532618 | 2.031334373699493 | 1.27059207206425 | 1.221458733721046
FOS | 11.15884967009572 | 6.318567095386669 | 2.496086561220205 | 3.468791472698919 | 1.774005531963094 | 2.821736797855187 | 3.796356300830254 | 4.185557787061992 | 2.85938463246434 | 3.542236041217079 | 3.387331581600986
GLI3 | 2.225964747446174 | 0.4453095156630738 | -0.4988384263412171 | -1.806986623576537 | -2.612112792842593 | -0.339700491333512 | 1.596273442757248 | 2.956973377126116 | 4.149791892938536 | 3.852240285399791 | 2.090854415520162
HIF3A | 3.914666495742187 | 3.094333609999994 | 2.42700027666667 | 0.3810005208072927 | -1.442666369654949 | -2.845333733139653 | 0.6730003377018239 | 0.7856667856591797 | 3.082333248875324 | 2.619666419448246 | 0.04633395077962088
HMGA2 | -1.577998366666669 | 1.5286265198516 | 0.9693912713969235 | 2.413004750829207 | 0.4573904210327949 | 0.1811325021972324 | 2.263459988736278 | 3.046618082920197 | 4.801676874101823 | 5.199527623794515 | 2.620246765212925
HOXD10 | -1.131962367387827 | 0.4273668282204985 | -0.09939396687486926 | -0.9972353592201139 | -0.5301755412349126 | 2.675758363757373 | 5.619785955402574 | 6.75549894081511 | 7.5831819140958 | 6.470528305966198 | 3.800575862266244
JUND | 6.956610055201774 | 4.442717349363085 | 4.297884073490195 | 2.505780332646279 | 1.083458687629439 | 1.777289459409803 | 4.62930457356065 | 5.356899267666754 | 5.177220523547848 | 6.412449979765903 | 4.613655437075094
KLF4 | 4.248771827765606 | 1.892069816727453 | 1.448512577513166 | -1.235637510360469 | -2.428559860180716 | -1.521832300949104 | 2.365615559737383 | 1.055636319222054 | 1.02101846598242 | 1.719031837669687 | 1.078927385209212
LMO1 | -2.829295327387824 | -3.321928094887362 | -2.487204927053808 | -4.290629993322066 | -3.772358090634119 | -1.739638070862586 | -0.9930450561992331 | -0.6990956041874878 | 2.876613907246623 | 2.792463902941935 | -0.0299471454531353
MECOM | -2.251295865080438 | 1.132606739828871 | 0.04617512263669906 | -0.9631593798875386 | -0.9828016799711952 | 0.3208530649489025 | 0.9301858503078705 | 3.182886115591921 | 5.421127757296379 | 6.194635704689535 | 3.961538609123375
NR4A2 | 6.327845912035938 | 3.335709857206582 | 2.853261090065246 | 0.5632320662889702 | -1.063869653196217 | -1.252382520618819 | 2.513492766896539 | 2.661350566072944 | 2.937400155267477 | 3.330268116022221 | 2.199926771583725
PRRX1 | -3.321928094887362 | 0.6343761050316397 | -1.11198615016271 | -0.9078930010858629 | -0.9091001149446409 | 0.3216864715504628 | 3.133721422564159 | 3.33204548032226 | 5.039647202221241 | 3.930071054156379 | 2.52109504134104
SALL1 | -3.321928094887362 | 2.781717224724036 | 1.72856046026124 | 1.475157057570376 | 0.757041954644502 | 3.688919080640696 | 2.707484386668948 | 5.760050386976952 | 7.644723639734321 | 7.255612636952318 | 5.551948739153613
SALL3 | 5.194551800134728 | 0.298539166572187 | -0.7526359927323004 | -1.006555962358068 | -0.2383623814662714 | 3.489646876541829 | 3.903835080743325 | 4.056717289172221 | 7.596191319227076 | 6.848452894749843 | 3.945890560116498
SALL4 | -3.321928094887362 | -0.3188923154905377 | -1.613268691859384 | 1.134928586549305 | 0.3209511060826364 | 3.570271981538213 | 4.548017841667768 | 4.893215490448485 | 4.757574119478085 | 2.989130974380893 | 0.2531211610023069
SHH | 0.27903843261217 | 1.675974289709836 | 1.03488155940893 | -0.1057128088490047 | -3.721630390450973 | -3.321928094887362 | 1.246371928884965 | 3.045201930025311 | 5.08010359551648 | 4.364127635368755 | -3.321928094887362
TNN | 5.194551800134728 | 0.298539166572187 | -0.7526359927323004 | 0.5519819174645958 | 0.8959240908634376 | 1.358973388448804 | 1.143030863242026 | 3.973937354979321 | 6.630449200432981 | 7.491283941579193 | 4.901878244531784