Spreadsheet: bc8ea6b1-e43a-4b4e-a29b-5c462250f5ef
Sheet: TF_Families

Table S3b Comparative classification of predicted transcription factors in F.fujikuroi and related species
Transcription factors are classified by interpro domains (Interpro ID, Interpro Description)
Interpro ID | Interpro Description | F. fujikuroi | F.verticillioides | F. oxysporum | F. circinatum | F. graminearum | F. mangiferae
IPR003163 | APSES | 2 | 1 | 2 | 1 | 2 | 2
IPR003163; IPR018004 | APSES; KilA, N-terminal | 3 | 3 | 3 | 2 | 3 | 3
IPR017956 | AT hook, DNA-binding motif | 8 | 5 | 6 | 8 | 9 | 7
IPR001606 | AT-rich interaction region | 4 | 3 | 4 | 3 | 3 | 4
IPR004827 (and/or IPR011700, IPR011616) | Basic-leucine zipper (bZIP) transcription factor | 26 | 22 | 77 | 23 | 25 | 25
IPR004827 (or IPR011616); IPR002112 | Basic-leucine zipper (bZIP) transcription factor; transcription factor [NAME] | 4 | 3 | 6 | 2 | 3 | 4
IPR011598 | bHLH | 15 | 15 | 62 | 14 | 16 | 14
IPR006565 | Bromodomain transcription factor | 3 | 3 | 3 | 4 | 4 | 4
IPR007087 | C2H2 zinc finger | 23 | 17 | 20 | 23 | 18 | 28
IPR007087; IPR015880 | C2H2 zinc finger; [NAME]-like zinc finger | 26 | 16 | 16 | 27 | 25 | 27
IPR007087; IPR015880; IPR003656 | C2H2 zinc finger; [NAME]-like zinc finger, BED-type zinc finger | 1 | 1 | 1 | 1 | 1 | 1
IPR007087; IPR015880; IPR013087 | C2H2 zinc finger; [NAME]-like zinc finger; [NAME]-type/integrase, DNA-binding | 33 | 34 | 37 | 32 | 29 | 35
IPR007087; IPR013087 | C2H2 zinc finger; [NAME]-type/integrase, DNA-binding | 5 | 4 | 13 | 4 | 3 | 3
IPR015880; IPR013087 | C2H2-like zinc finger; [NAME]-type/integrase, DNA-binding | 4 | 2 | 2 | 2 | 4 | 3
IPR015416 | [NAME] finger, histone UAS binding | 1 | 1 | 1 | 1 | 1 | 1
IPR003956; IPR003957; IPR003958; IPR001289 or IPR005612 | CCAAT factors | 10 | 9 | 11 | 11 | 11 | 11
[NAME] | CCR4-Not complex component, Not1 | 1 | 1 |  | 2 | 1 | 1
IPR006695 | Centromere protein Cenp-B, DNA-binding domain 1 | 1 | 1 | 1 | 2 | 1 | 1
IPR002059 | Cold-shock protein, DNA-binding |  |  |  |  | 1
IPR001083 | Copper fist DNA-binding | 4 | 2 | 2 | 3 | 4 | 4
IPR007604 | CP2 transcription factor | 1 | 1 | 1 | 1 | 1 | 1
IPR003034 | DNA-binding SAP | 3 | 3 | 5 | 3 | 3 | 3
IPR001766 (IPR018122); IPR011991 | Fork head; Winged helix-turn-helix transcription repressor DNA-binding | 4 | 3 | 5 | 3 | 4 | 3
IPR001766; IPR011991; IPR017956 | Fork head; Winged helix-turn-helix transcription repressor DNA-binding; AT hook, DNA-binding motif |  | 1
IPR007219 | Fungal specific transcription factor | 74 | 103 | 118 | 138 | 56 | 128
IPR007219; IPR007087 | Fungal specific transcription factor; C2H2 zinc finger |  |  | 1
IPR007219; IPR007087; IPR015880 | Fungal specific transcription factor; C2H2 zinc finger; [NAME]-like zinc finger |  |  |  |  | 1
IPR007219; IPR007087; IPR015880; IPR013087 | Fungal specific transcription factor; C2H2 zinc finger; [NAME]-like zinc finger; [NAME]-type/integrase, DNA-binding | 14 | 5 | 8 | 8 | 9 | 8
IPR001387; IPR010982 | Helix-turn-helix type 3; lambda repressor-like, DNA-binding | 1 | 1 | 1 | 1 | 1 | 1
IPR007889 | Helix-turn-helix, Psq | 2 |  | 1 | 1 |  | 4
IPR000910; IPR009071 | HMG | 8 | 8 | 12 | 7 | 9 | 8
[NAME]; IPR017956 | HMG; AT hook, DNA-binding motif |  |  | 1 |  | 1 | 1
IPR000910; IPR009071; IPR011991 | HMG; Winged helix-turn-helix transcription repressor DNA-binding | 1 |  |  | 1 | 1 | 1
IPR001356 (and/or IPR008422; IPR017970) | Homeobox (KN domain; homeobox conserved site) | 7 | 7 | 8 | 7 | 6 | 9
IPR001356; (IPR013087; IPR007087; IPR0015880); IPR008422 | Homeobox; C2H2 zinc finger; KN domain | 5 | 2 | 4 | 6 | 6 | 4
IPR010982 | Lambda repressor-like, DNA-binding | 2 | 1 | 4 | 1 | 1 | 1
IPR002100 | MADS-box | 2 | 2 | 4 | 2 | 2 | 4
IPR014778 ([NAME]; IPR014778; IPR015495); and/or IPR001005 | Myb; SANT domain | 13 | 13 | 17 | 12 | 15 | 12
IPR014778; IPR001005; IPR017174 | Myb; SANT domain; fungal transcription factor IIIB, Bdp1 subunit | 1 |  | 1 | 1 |  | 1
IPR014778; IPR001005; IPR011991 | Myb; SANT domain; Winged helix-turn-helix transcription repressor DNA-binding | 1 | 1 | 1 | 1 | 1
IPR007396 | Negative transcriptional regulator | 2 | 3 | 2 | 2 | 2 | 2
IPR008967 | p53-like transcription factor | 3 | 3 | 4 | 3 | 3 | 3
IPR014839 | Ribonucleotide reductase, transcriptional regulator CRT10 | 1 |  |  | 1 |  | 1
IPR005011 | SART1 | 1 | 1 | 1 | 1 | 1 | 1
IPR010770 | SGT1 | 1 | 1 | 1 | 1 | 1 | 1
IPR011344 or IPR009044 | ssDNA-binding transcriptional regulator | 2 | 2 | 2 | 2 | 2 | 2
IPR000818 | TEA/ATTS | 1 | 1 | 1 | 1 |  | 1
IPR013129 (and/or IPR003347; IPR003349) | Transcription factor [NAME] | 8 | 7 | 9 | 9 | 9 | 5
IPR013129 (and IPR003347); IPR017956 | Transcription factor [NAME]; AT hook, DNA-binding motif | 1 | 1 | 1 |  | 1 | 1
IPR013129 (and/or IPR003347; IPR003349); IPR004198 | Transcription factor [NAME]; C5HC2 zinc finger |  | 1 | 1 |  |  | 10
IPR013129 (and IPR003347; IPR003349); IPR004198; IPR001606 | Transcription factor [NAME]; C5HC2 zinc finger; AT-rich interaction region | 1 |  |  | 1 | 1
IPR004198 | C5HC2 zinc finger |  |  |  |  |  | 1
IPR000812; IPR002853; IPR003166; IPR016656 | Transcription factor TFIIs | 4 | 3 | 3 | 6 | 4 | 4
IPR004330 | Transcription factor, [NAME] | 1 | 1 | 3 | 2 | 1 | 1
IPR011991 | Winged helix-turn-helix transcription repressor DNA-binding | 33 | 32 | 37 | 32 | 31 | 31
IPR011991; IPR003150 | Winged helix-turn-helix transcription repressor DNA-binding; DNA-binding RFX | 1 | 1 | 1 | 1 | 1 | 3
IPR011991; IPR000232 | Winged helix-turn-helix transcription repressor DNA-binding; Heat shock factor (HSF)-type, DNA-binding; | 3 | 3 | 3 | 2 | 3 | 1
IPR008895 | YL1 nuclear | 1 | 1 | 1 | 1 | 1 | 1
IPR015880 | Zinc finger, [NAME]-like | 4 | 1 | 1 | 2 | 6 | 1
IPR000690 | Zinc finger, [NAME]-type matrin | 2 | 2 | 2 | 2 | 2 | 2
IPR000690; IPR007087; IPR015880 | Zinc finger, [NAME]-type matrin; C2H2 zinc finger; [NAME]-like zinc finger | 1 | 1 | 1 | 1 | 1 | 1
IPR013087 | Zinc finger, [NAME]-type/integrase, DNA-binding |  | 1 | 3 | 1 |  | 1
IPR000571 | Zinc finger, CCCH-type | 20 | 18 | 19 | 18 | 20 | 18
IPR000571; IPR007087 | Zinc finger, CCCH-type;   C2H2 zinc finger | 2 |  |  | 1 | 1
IPR000571; IPR000967 | Zinc finger, CCCH-type; Zinc finger, NF-X1-type |  |  | 1
IPR001878 or IPR019401 | Zinc finger, CCHC-type | 12 | 11 | 20 | 12 | 12 | 17
IPR001594 | Zinc finger, DHHC-type | 6 | 3 | 5 | 5 | 5 | 6
IPR015088 | Zinc finger, DNA-directed DNA polymerase, family B, alpha | 1 | 1 | 1 | 1 | 1 | 6
IPR000679; IPR013088 | Zinc finger, GATA-type | 9 | 6 | 8 | 6 | 9 | 7
IPR010666 | Zinc finger, GRF-type | 2 | 1 | 1 | 1 | 2 | 1
IPR004181 | Zinc finger, MIZ-type | 3 | 2 | 2 | 3 | 3 | 3
IPR000967 | Zinc finger, NF-X1-type |  |  |  |  | 1
IPR001510 | Zinc finger, PARP-type | 1 | 1 | 1 | 1 | 1 | 1
IPR006642 | Zinc finger, Rad18-type putative | 3 | 3 | 3 | 3 | 1 | 3
IPR006642; IPR007087 | Zinc finger, Rad18-type putative; C2H2 zinc finger |  |  |  |  | 1 | 1
IPR006642; IPR003034 | Zinc finger, Rad18-type putative; DNA-binding SAP | 1 |  |  | 1 | 1
IPR001138 | Zn(2)-C6 fungal-type DNA-binding domain | 260 | 140 | 156 | 197 | 166 | 227
IPR001138; IPR007219 | Zn(2)-C6 fungal-type DNA-binding domain; fungal specific transcription factor | 235 | 90 | 120 | 160 | 144 | 208
IPR001138; IPR007219 (and/or IPR007087, IPR013087, IPR015880) | Zn(2)-C6 fungal-type DNA-binding domain; fungal specific transcription factor, C2H2 zinc finger | 10 | 4 | 3 | 3 | 7 | 6
Total number of TFs
a Individual TF were classified into families based on the DNA binding domain.