Spreadsheet: 12ba16b7-d2a6-4b16-88bb-e09d9e906351
Sheet: Sheet1

Table S1. Differential Expression Results from Subtractive Libraries at 99.99% Specificity  Only known genes are shown. SF: Synovial Fibroblasts, WJ: Whole joints, Up: upregulated genes, Down: downregulated genes. R refers to the differential expression likehood value of any gene to its corresponding library (SF: L0L1, WJ: [NAME]). p≤0.0001 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5
R | Expression | Genbank | [NAME] | Gene description | Symbol
11.403 | SF Up | NM_011198 | [NAME] | prostaglandin-endoperoxide synthase 2 | Ptgs2
10.341 | SF Up | NM_008198 | Mm.653 | histocompatibility 2, complement component factor B | H2-Bf
8.1254 | SF Up | AK045288 | Mm.138158 | Lipoma preferred partner (Homo sapiens) homolog | LPP homolog
7.3867 | SF Up | NM_023158 | Mm.46424 | Cxc chemokine ligand 16 | Cxcl16
5.9094 | SF Up | NM_011595 | Mm.4871 | tissue inhibitor of metalloproteinase 3 | Timp3
5.9094 | SF Up | NM_008292 | Mm.3195 | hydroxysteroid (17-beta) dehydrogenase 4 | Hsd17b4
21.924 | SF Down | NM_009636 | Mm.4665 | AE binding protein 1 | Aebp1
11.693 | SF Down | NM_012052 | Mm.147693 | ribosomal protein S3 | Rps3
10.623 | SF Down | NM_010288 | Mm.4504 | gap junction membrane channel protein alpha 1 | Gja1
10.394 | SF Down | NM_016685 | Mm.45071 | cartilage oligomeric matrix protein | Comp
7.9199 | SF Down | NM_011354 | Mm.227209 | small EDRK-rich factor 2 | Serf2
7.1457 | SF Down | NM_007475 | Mm.5286 | acidic ribosomal phosphoprotein PO | Arbp
6.8872 | SF Down | NM_009263 | Mm.260317 | secreted phosphoprotein 1 | Spp1
6.777 | SF Down | BF122010 | Mm.196614 | Elongation factor 1A-1/ Elongation factor [NAME] | eEF1A-1/EF-Tu
6.7577 | SF Down | NM_007653 | Mm.4426 | Cd63 antigen | Cd63
6.6686 | SF Down | NM_016959 | Mm.6957 | ribosomal protein S3a | Rps3a
6.5696 | SF Down | NM_011653 | Mm.231463 | tubulin, alpha 1 | Tuba1
6.0836 | SF Down | NM_026007 | Mm.42960 | Eukaryotic translation elongation factor 1 gamma | Eef1g
5.8465 | SF Down | NM_008590 | [NAME] | mesoderm specific transcript | Mest
5.8465 | SF Down | NM_031167 | Mm.882 | interleukin 1 receptor antagonist | Il1rn
8.4823 | WJ Up | AK031964 | Mm.100117 | RIKEN cDNA 5730406M06 gene | 5730406M06Rik
6.0588 | WJ Up | NM_019467 | Mm.10747 | allograft inflammatory factor 1 | Aif1
8.4823 | WJ Up | NM_008598 | Mm.1216 | O-6-methylguanine-DNA methyltransferase | Mgmt
8.4823 | WJ Up | NM_023380 | Mm.131406 | SAM domain, SH3 domain and nuclear localisation signals, 1 | Samsn1
9.6941 | WJ Up | NM_152816 | Mm.140013 | dynamin 1-like | Dnm1l
5.8215 | WJ Up | NM_016852 | Mm.1405 | WW domain binding protein 2 | Wbp2
9.6941 | WJ Up | NM_010496 | Mm.1466 | inhibitor of DNA binding 2 | Idb2
10.906 | WJ Up | [NAME] | Mm.154427 | deiodinase, iodothyronine type III | Dio3
7.2706 | WJ Up | NM_029186 | Mm.159290 | RIKEN cDNA 4930538D17 gene | 4930538D17Rik
7.2706 | WJ Up | AK014762 | Mm.159562 | RIKEN cDNA 4930463G05 gene | 4930463G05Rik
6.0588 | WJ Up | AK045480 | [NAME] | RIKEN cDNA C030011J08 gene | C030011J08Rik
7.2706 | WJ Up | NM_007974 | Mm.1614 | coagulation factor II (thrombin) receptor-like 1 | F2rl1
7.2706 | WJ Up | NM_011637 | Mm.17632 | three prime repair exonuclease 1 | Trex1
10.436 | WJ Up | NM_010239 | Mm.1776 | ferritin heavy chain | Fth
6.0588 | WJ Up | NM_138303 | Mm.178115 | RIKEN cDNA 1300010K09 gene | 1300010K09Rik
6.0588 | WJ Up | NM_018864 | Mm.183042 | inositol (myo-1or 4)-monophosphatase 1 | Impa1
16.965 | WJ Up | NM_019643 | Mm.18637 | teratocarcinoma expressed, serine rich | Tera
9.6941 | WJ Up | NM_009778 | Mm.19131 | complement component 3 | [NAME]
6.397 | WJ Up | NM_146252 | Mm.19172 | TBC1 domain family, member 13 | Tbc1d13
8.4823 | WJ Up | NM_145605 | Mm.196549 | Kelch domain containing 4 | Klhdc4
7.2706 | WJ Up | NM_053196 | Mm.197430 | sideroflexin 2 | Sfxn2
6.0588 | WJ Up | NM_022323 | Mm.202763 | modulator of apoptosis 1 | Moap1
9.6941 | WJ Up | BU526131 | Mm.203870 | Expressed sequence AI413582 | AI413582
10.906 | WJ Up | NM_009223 | Mm.203898 | stannin | Snn
14.541 | WJ Up | NM_172465 | Mm.207367 | RIKEN cDNA 9530098M12 gene | 9530098M12Rik
7.2706 | WJ Up | NM_009564 | Mm.2095 | zinc finger protein 64 | Zfp64
7.2706 | WJ Up | NM_009831 | Mm.2103 | cyclin G1 | Ccng1
6.0588 | WJ Up | BY734237 | Mm .331072 | weakly similar to B34087 hypothetical protein (H.sapiens) | B34087
6.0588 | WJ Up | NM_026506 | Mm.21764 | small nuclear ribonucleoprotein polypeptide G | Snrpg
7.2706 | WJ Up | NM_024233 | Mm.21911 | small fragment nuclease | Smfn
8.4823 | WJ Up | NM_133991 | Mm.227141 | [NAME] homolog (E. coli) | [NAME]
7.2706 | WJ Up | AK045814 | Mm.227710 | RIKEN cDNA B230312C02 gene | B230312C02Rik
6.0588 | WJ Up | AK089194 | Mm.240424 | Expressed sequence AI597013 | AI597013
6.0588 | WJ Up | NM_078479 | Mm.24108 | mitochondrial ribosomal protein S21 | Mrps21
6.0588 | WJ Up | NM_023143 | Mm.24276 | complement component 1, r subcomponent | C1r
6.0588 | WJ Up | NM_133801 | Mm.24632 | expressed sequence C76800 | C76800
8.4823 | WJ Up | NM_172609 | Mm.246435 | translocase of outer [NAME]. membrane 22 homolog (yeast) | Tomm22
6.0588 | WJ Up | AK050649 | Mm.247488 | DNA segment, Chr 1, ERATO Doi 251, expressed | D1Ertd251e
8.4823 | WJ Up | [NAME] | Mm.25412 | RIKEN cDNA 0610011H20 gene | 0610011H20Rik
6.0588 | WJ Up | NM_025667 | Mm.25581 | DNA segment, Chr 4, ERATO Doi 196, expressed | D4Ertd196e
16.965 | WJ Up | AK082431 | Mm.258951 | Splicing factor 3a, subunit 1 | Sf3a1
6.0588 | WJ Up | NM_134116 | Mm.26584 | expressed sequence AA960287 | AA960287
7.2706 | WJ Up | NM_017370 | Mm.26730 | haptoglobin | Hp
8.4823 | WJ Up | AK089041 | Mm.27001 | RIKEN cDNA C130032F08 gene | C130032F08Rik
9.6941 | WJ Up | NM_012025 | Mm.27141 | Rac GTPase-activating protein 1 | Racgap1
8.4823 | WJ Up | NM_013919 | Mm.27510 | ubiquitin specific protease 21 | Usp21
10.906 | WJ Up | NM_011026 | Mm.27861 | purinergic receptor P2X, ligand-gated ion channel 4 | P2rx4
6.0588 | WJ Up | NM_024471 | Mm.28591 | lipoic acid synthetase | Lias
7.2706 | WJ Up | NM_016692 | Mm.29755 | inner centromere protein | Incenp
6.0588 | WJ Up | NM_026521 | Mm.3035 | RIKEN cDNA 3110006P09 gene | 3110006P09Rik
8.4823 | WJ Up | NM_024442 | [NAME] | cytochrome P450, family 4, subfamily f, polypeptide 16 | Cyp4f16
7.2706 | WJ Up | NM_054102 | Mm.33764 | Nd1 | Nd1
6.0588 | WJ Up | NM_026609 | Mm.34212 | RIKEN cDNA 1520402O14 gene | 1520402O14Rik
7.2706 | WJ Up | AK079163 | Mm.34220 | RIKEN cDNA 9430093I07 gene | 9430093I07Rik
6.0588 | WJ Up | NM_026784 | Mm.34242 | RIKEN cDNA 1110011E12 gene | 1110011E12Rik
6.0588 | WJ Up | NM_027878 | Mm.35450 | RIKEN cDNA 1200002N14 gene | 1200002N14Rik
9.6941 | WJ Up | NM_021281 | Mm.3619 | cathepsin S | Ctss
7.2706 | WJ Up | BQ031965 | Mm.3925 | S100 calcium binding protein A4 | S100a4
6.0588 | WJ Up | BE987499 | Mm.39752 | RIKEN cDNA 2900041A09 gene | 2900041A09Rik
7.2706 | WJ Up | NM_029849 | Mm.45078 | RIKEN cDNA 4632433K11 gene | 4632433K11Rik
7.2706 | WJ Up | NM_007659 | Mm.4761 | cell division cycle 2 homolog A (S. pombe) | Cdc2a
7.2706 | WJ Up | NM_007888 | Mm.5114 | dishevelled 2, dsh homolog (Drosophila) | Dvl2
9.6941 | WJ Up | NM_008079 | Mm.5120 | galactosylceramidase | Galc
7.2706 | WJ Up | NM_008307 | Mm.5128 | HpaII tiny fragments locus 9c | Htf9c
7.2706 | WJ Up | NM_026260 | Mm.60758 | RIKEN cDNA 4930521E07 gene | 4930521E07Rik
8.4823 | WJ Up | AK081497 | Mm.72070 | Hypothetical protein C130021I20 | C130021I20
6.908 | WJ Up | NM_010240 | Mm.7500 | ferritin light chain 1 | Ftl1
7.2706 | WJ Up | NM_011593 | Mm.8245 | tissue inhibitor of metalloproteinase 1 | Timp1
14.541 | WJ Up | NM_054088 | Mm.86557 | adiponutrin | Adpn
7.2706 | WJ Up | NM_010279 | Mm.88367 | glial cell line derived neurotrophic factor family receptor α1 | [NAME]
9.1872 | WJ Down | NM_011403 | Mm.7248 | solute carrier family 4, member 1 | Slc4a1
7.0671 | WJ Down | NM_023644 | Mm.154589 | methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) | Mccc1
7.0671 | WJ Down | NM_008443 | Mm.4635 | [NAME] member 3A | Kif3a
6.3604 | WJ Down | NM_007431 | Mm.1265 | alkaline phosphatase 2, liver | Akp2
6.3604 | WJ Down | AK009375 | Mm.67737 | DNA segment, Chr 11, ERATO Doi 736, expressed | [NAME]
6.007 | WJ Down | NM_017397 | Mm.26703 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 20 | Ddx20
6.007 | WJ Down | NM_027445 | [NAME] | RIKEN cDNA 5730408C10 gene | 5730408C10Rik