Spreadsheet: e718ef21-35fd-4fd0-947d-c3b08c34ef44
Sheet: Sheet1

Sample ID | Species | Group | Sex | Source | RIN | library type | reads after quality filtering and merging | mapped reads | mapped reads (%) | notes
Dog_J1 | Canis familiaris | domestic | f | Veterinary practice, Leipzig, Germany | 9.6 | PE51 | 21681694 | 19483157 | 0.8985993898816209
Dog_J2 | Canis familiaris | domestic | m | Veterinary practice, Leipzig, Germany | 9.6 | PE51 | 17367938 | 15979046 | 0.9200312668089902
Dog_J3 | Canis familiaris | domestic | m | Veterinary practice, Leipzig, Germany | 9.1 | PE51 | 15978210 | 14812196 | 0.9270247418202665
Dog_J4 | Canis familiaris | domestic | f | Veterinary practice, Leipzig, Germany | 8.8 | PE51 | 20632253 | 18353231 | 0.8895408077828437
Dog_T1 | Canis familiaris | domestic | m | Animal shelter, Leipzig, Germany | 9.3 | PE51 | 21022166 | 18210587 | 0.8662564552101815
Wolf_Conny | Canis lupus | wild | m | [NAME], Germany | 8.5 | PE51 | 21400074 | 18859293 | 0.881272326441488
Wolf_K1 | Canis lupus | wild | f | [NAME], Germany | good [NAME] on gel | PE51 | 21860980 | 19764272 | 0.9040890207117888
Wolf_K3 | Canis lupus | wild | f | [NAME], Germany | 8 | PE51 | 18597874 | 16604688 | 0.8928272124007293
Wolf_O1 | Canis lupus | wild | m | Tier- und [NAME], Austria | 9.3 | PE51 | 20069118 | 17001696 | 0.8471571097444343
Wolf_O2 | Canis lupus | wild | m | Tier- und [NAME], Austria | 9.3 | PE51 | 16250247 | 14972535 | 0.9213727643647509
Wolf_O3 | Canis lupus | wild | m | Tier- und [NAME], Austria | 9.5 | PE51 | 21544048 | 19062598 | 0.8848196959085869
boar_1 | Sus scrofa | wild | f | Commercial farm, Sweden | 8.8 | PE51 | 15266629 | 11405631 | 0.7470955768952007
boar_2 | Sus scrofa | wild | f | Commercial farm, Sweden | 9.1 | PE51 | 16219669 | 12268001 | 0.7563656816917781
boar_3 | Sus scrofa | wild | f | Commercial farm, Sweden | 8.2 | PE51 | 18105912 | 13270918 | 0.7329604827417696
boar_4 | Sus scrofa | wild | f | Commercial farm, Sweden | 8.8 | PE51 | 28959338 | 19536814 | 0.6746291645202663
boar_5 | Sus scrofa | wild | f | Commercial farm, Sweden | 9 | PE51 | 17220145 | 13047013 | 0.7576598803320181
pig_6 | Sus scrofa | domestic | f | Commercial farm, Sweden | 8.8 | PE51 | 20780274 | 14896614 | 0.7168632136419375
pig_7 | Sus scrofa | domestic | f | Commercial farm, Sweden | 8.9 | PE51 | 20551490 | 15085593 | 0.7340388945035129
pig_8 | Sus scrofa | domestic | f | Commercial farm, Sweden | 9 | PE51 | 20691455 | 14546609 | 0.703024944355049
pig_9 | Sus scrofa | domestic | f | Commercial farm, Sweden | 9 | PE51 | 28361537 | 19056979 | 0.6719304034897685
pig_10 | Sus scrofa | domestic | f | Commercial farm, Sweden | 8.7 | PE51 | 18809400 | 13971054 | 0.742769785320106
A107 | Oryctolagus cuniculus domesticus | domestic | m | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.4 | PE51 | 18754315 | 15709620 | 0.8376536279784146
A108 | Oryctolagus cuniculus domesticus | domestic | f | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.3 | PE51 | 15852225 | 13433611 | 0.8474274746920385
A111 | Oryctolagus cuniculus domesticus | domestic | m | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.2 | PE51 | 14785034 | 12107342 | 0.8188917252405371
A112 | Oryctolagus cuniculus domesticus | domestic | f | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.3 | PE51 | 14576462 | 12092302 | 0.829577300719475
A115 | Oryctolagus cuniculus domesticus | domestic | f | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.5 | PE51 | 21946955 | 17547854 | 0.7995575696036192
A116 | Oryctolagus cuniculus domesticus | domestic | m | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.5 | PE51 | 16521758 | 13712692 | 0.8299777783938005
7213 | Oryctolagus cuniculus | wild | m | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9 | PE51 | 70075308 | 14550711 | 0.207643910748134
7808 | Oryctolagus cuniculus | wild | f | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.4 | PE51 | 20357140 | 16968932 | 0.8335616889209388
7811 | Oryctolagus cuniculus | wild | f | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.3 | PE51 | 13449419 | 10642610 | 0.7913063010379854
7357 | Oryctolagus cuniculus | wild | m | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.5 | PE51 | 15931596 | 11455459 | 0.7190402643903347
7289 | Oryctolagus cuniculus | wild | f | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.5 | PE51 | 26671987 | 21678202 | 0.8127704171421499
7810 | Oryctolagus cuniculus | wild | m | Instituto de Investigacion en Recursos Cinegéticos IREC (CSIC-UCLM-JCCM), Spain | 9.3 | PE51 | 19448251 | 15823947 | 0.8136437050303392
D1m | Cavia porcellus | domestic | m | University of Münster, Germany | 8.4 | PE51 | 16018257 | 13299471 | 0.8302695480538238
D2m | Cavia porcellus | domestic | m | University of Münster, Germany | 8.4 | PE51 | 16146001 | 13916237 | 0.8618999218444245
D7m | Cavia porcellus | domestic | m | University of Münster, Germany | 8.1 | PE51 | 23347766 | 19497094 | 0.8350732142852554
D4f | Cavia porcellus | domestic | f | University of Münster, Germany | 9 | PE51 | 24325744 | 21171235 | 0.8703221985728371
[NAME] | Cavia porcellus | domestic | f | University of Münster, Germany | 7.4 | PE51 | 14291841 | 12838966 | 0.8983423479172488
[NAME] | Cavia porcellus | domestic | f | University of Münster, Germany | 9.4 | PE51 | 19225580 | 17155612 | 0.8923326110317608
A1m | Cavia aperea | wild | m | University of Münster, Germany | 8.5 | PE51 | 11925177 | 10244472 | 0.8590624692614626
A2m | Cavia aperea | wild | m | University of Münster, Germany | 9 | PE51 | 14741487 | 12873013 | 0.873250642896473
A3m | Cavia aperea | wild | m | University of Münster, Germany | 9.1 | PE51 | 11286967 | 9616323 | 0.8519846828647589
A4f | Cavia aperea | wild | f | University of Münster, Germany | 7.7 | PE51 | 7699913 | 5778257 | 0.7504314659139655
A5f | Cavia aperea | wild | f | University of Münster, Germany | 9.5 | PE51 | 19667807 | 17001735 | 0.8644448768487508
A6f | Cavia aperea | wild | f | University of Münster, Germany | 8.2 | PE51 | 15488793 | 13781011 | 0.8897407951671896
AF1 | Rattus norvegicus | aggressive | f | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.1 | PE51 | 16714920 | 9264157 | 0.5542447705403316 | "mapped reads" are based on reads trimmed to SE51
AF2 | Rattus norvegicus | aggressive | f | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.1 | PE51 | 20094356 | 10415331 | 0.5183212141757616 | "mapped reads" are based on reads trimmed to SE51
AF3 | Rattus norvegicus | aggressive | f | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.1 | PE51 | 24827497 | 6840428 | 0.2755182288411917 | "mapped reads" are based on reads trimmed to SE51
AM1 | Rattus norvegicus | aggressive | m | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.1 | PE51 | 22182211 | 11882369 | 0.5356710834641326 | "mapped reads" are based on reads trimmed to SE51
AM2 | Rattus norvegicus | aggressive | m | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.2 | PE51 | 20772278 | 10847637 | 0.5222170144266315 | "mapped reads" are based on reads trimmed to SE51
AM3 | Rattus norvegicus | aggressive | m | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8 | PE51 | 19846075 | 10245191 | 0.5162326051876757 | "mapped reads" are based on reads trimmed to SE51
TF1 | Rattus norvegicus | tame | f | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.1 | PE51 | 20265500 | 4455975 | 0.2198798450568701 | "mapped reads" are based on reads trimmed to SE51
TF2 | Rattus norvegicus | tame | f | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.1 | SE76 | 35033876 | 17235599 | 0.4919695154484191 | "mapped reads" are based on reads trimmed to SE51
TF3 | Rattus norvegicus | tame | f | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8 | SE76 | 40482360 | 16116510 | 0.3981119183763002 | "mapped reads" are based on reads trimmed to SE51
TM1 | Rattus norvegicus | tame | m | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 7.7 | PE51 | 22180521 | 12143491 | 0.5474844797378745 | "mapped reads" are based on reads trimmed to SE51
TM2 | Rattus norvegicus | tame | m | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8.1 | PE51 | 20958618 | 10837137 | 0.5170730722798612 | "mapped reads" are based on reads trimmed to SE51
TM3 | Rattus norvegicus | tame | m | Max Planck Institute for Evolutionary Anthropology, Leipzig, Germany | 8 | PE76 | 10970256 | 6309530 | 0.575148838823816 | "mapped reads" are based on reads trimmed to SE51
 |  |  |  |  |  |  |  | 13971054
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