Spreadsheet: 8715204f-bf03-4315-a649-ca3e96cc4031
Sheet: Sheet1

Table S3. Scaffolds inferred to be of bacterial contaminants1 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6
SCAFFOLD ID | [NAME] of scaffold (nt)2 | Bacterial-protein-like PPPs
 |  | Number | Total size of ORFs (nt) | Ratio3 | Accession of BLASTX top hit | Organism of BLASTX top hit
SCAFFOLD288 | 936 | 2 | 750 | 0.8012820512820514 | YP_002634156 | Staphylococcus carnosus subsp. carnosus TM300
SCAFFOLD474 | 1431 | 1 | 495 | 0.3459119496855346 | YP_001907390 | Erwinia tasmaniensis Et1/99
SCAFFOLD855 | 2663 | 4 | 2562 | 0.9620728501689824 | ZP_03280472 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD937 | 1264 | 2 | 1176 | 0.9303797468354431 | ZP_03282698 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD990 | 1935 | 2 | 1959 | 1.012403100775194 | ZP_02962158 | Providencia stuartii ATCC 25827
SCAFFOLD1244 | 2396 | 4 | 2325 | 0.9703672787979967 | YP_001337745 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578
SCAFFOLD1247 | 2674 | 3 | 1830 | 0.6843679880329095 | ZP_05727703 | Pantoea sp. At-9b
SCAFFOLD1736 | 1166 | 2 | 984 | 0.8439108061749572 | ZP_04796691 | Staphylococcus epidermidis W23144
SCAFFOLD1904 | 1224 | 1 | 921 | 0.7524509803921569 | ZP_05732426 | Pantoea sp. At-9b
SCAFFOLD2197 | 2530 | 3 | 2544 | 1.005533596837945 | ZP_04677139 | Staphylococcus [NAME]
SCAFFOLD2212 | 3703 | 4 | 2544 | 0.6870105320010802 | ZP_05727736 | Pantoea sp. At-9b
SCAFFOLD2279 | 2112 | 2 | 1446 | 0.6846590909090909 | ZP_05732600 | Pantoea sp. At-9b
SCAFFOLD2298 | 2767 | 2 | 1992 | 0.7199132634622335 | ZP_05730857 | Pantoea sp. At-9b
SCAFFOLD2376 | 1485 | 2 | 1191 | 0.802020202020202 | ZP_05728412 | Pantoea sp. At-9b
SCAFFOLD2711 | 1605 | 3 | 1179 | 0.7345794392523365 | ZP_05728847 | Pantoea sp. At-9b
SCAFFOLD2752 | 913 | 1 | 513 | 0.5618838992332968 | ZP_03834412 | Citrobacter youngae ATCC 29220
SCAFFOLD2787 | 912 | 1 | 555 | 0.6085526315789473 | ZP_03281841 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD2852 | 1055 | 1 | 1017 | 0.9639810426540284 | YP_002560012 | Macrococcus caseolyticus JCSC5402
SCAFFOLD2975 | 1156 | 1 | 1032 | 0.892733564013841 | ZP_03283730 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD31838 | 3596 | 3 | 2928 | 0.814238042269188 | ZP_05730814 | Pantoea sp. At-9b
SCAFFOLD3191 | 2924 | 3 | 2928 | 1.001367989056088 | [NAME] | Enterobacter cancerogenus ATCC 35316
SCAFFOLD3205 | 5443 | 5 | 4773 | 0.8769061179496602 | YP_174081 | Bacillus clausii KSM-K16
SCAFFOLD3211 | 933 | 1 | 795 | 0.8520900321543408 | YP_002873820 | Pseudomonas fluorescens SBW25
SCAFFOLD3217 | 1401 | 3 | 1344 | 0.9593147751605996 | YP_002560403 | Macrococcus caseolyticus JCSC5402
SCAFFOLD3306 | 1548 | 2 | 1542 | 0.9961240310077519 | ZP_04624175 | [NAME] 33638
SCAFFOLD3395 | 1486 | 1 | 231 | 0.1554508748317631 | ZP_05728088 | Pantoea sp. At-9b
SCAFFOLD3396 | 2219 | 3 | 2289 | 1.031545741324921 | YP_252566 | Staphylococcus haemolyticus JCSC1435
SCAFFOLD3414 | 1692 | 2 | 1836 | 1.085106382978723 | ZP_05732559 | Pantoea sp. At-9b
SCAFFOLD3717 | 4122 | 4 | 3195 | 0.7751091703056768 | ZP_05401461 | Clostridium difficile QCD-23m63
SCAFFOLD3860 | 1828 | 3 | 1686 | 0.9223194748358862 | ZP_03987182 | Staphylococcus aureus
SCAFFOLD4406 | 1334 | 1 | 1110 | 0.8320839580209894 | ZP_05729035 | Pantoea sp. At-9b
SCAFFOLD4457 | 979 | 2 | 837 | 0.8549540347293157 | YP_001377133 | Bacillus cereus subsp. cytotoxis NVH 391-98
SCAFFOLD4759 | 1525 | 1 | 903 | 0.5921311475409836 | ZP_03280661 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD4817 | 965 | 1 | 594 | 0.6155440414507772 | YP_001006310 | Yersinia enterocolitica subsp. enterocolitica
SCAFFOLD4952 | 1898 | 2 | 1455 | 0.7665964172813488 | ZP_04798188 | Staphylococcus epidermidis W23144
SCAFFOLD5159 | 4343 | 5 | 3993 | 0.9194105457057333 | ZP_05730372 | Pantoea sp. At-9b
SCAFFOLD5489 | 1222 | 2 | 1089 | 0.8911620294599019 | YP_001307839 | Clostridium beijerinckii NCIMB 8052
SCAFFOLD5696 | 2751 | 4 | 2727 | 0.9912758996728462 | ZP_05732579 | Pantoea sp. At-9b
SCAFFOLD5699 | 3644 | 4 | 2814 | 0.7722283205268936 | CAX55624 | Erwinia pyrifoliae Ep1/96
SCAFFOLD5705 | 4227 | 5 | 3723 | 0.8807665010645848 | ZP_05727411 | Pantoea sp. At-9b
SCAFFOLD5878 | 1545 | 3 | 1458 | 0.9436893203883495 | ZP_05732540 | Pantoea sp. At-9b
SCAFFOLD5918 | 1473 | 2 | 1341 | 0.9103869653767821 | ZP_03282869 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD6253 | 3572 | 4 | 3516 | 0.9843225083986562 | ZP_05730411 | Pantoea sp. At-9b
SCAFFOLD6280 | 1832 | 2 | 1794 | 0.9792576419213974 | ZP_05729493 | Pantoea sp. At-9b
SCAFFOLD6312 | 1074 | 2 | 1032 | 0.9608938547486033 | ZP_05728889 | Pantoea sp. At-9b
SCAFFOLD6338 | 899 | 2 | 768 | 0.8542825361512792 | [NAME] | Staphylococcus aureus
SCAFFOLD6402 | 1277 | 2 | 1263 | 0.9890368050117463 | ZP_05727149 | Pantoea sp. At-9b
SCAFFOLD6437 | 1350 | 2 | 1419 | 1.051111111111111 | ZP_05729527 | Pantoea sp. At-9b
SCAFFOLD6491 | 2477 | 1 | 1014 | 0.4093661687525232 | ZP_05730700 | Pantoea sp. At-9b
SCAFFOLD6779 | 2415 | 4 | 2943 | 1.218633540372671 | ZP_05729985 | Pantoea sp. At-9b
SCAFFOLD7125 | 11403 | 14 | 11553 | 1.013154433043936 | ZP_03282713 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD7228 | 5090 | 4 | 4407 | 0.8658153241650295 | AAT90793 | uncultured proteobacterium QS1
SCAFFOLD7292 | 866 | 2 | 849 | 0.9803695150115473 | ZP_05728931 | Pantoea sp. At-9b
SCAFFOLD7327 | 1597 | 2 | 1569 | 0.9824671258609894 | YP_002769818 | Brevibacillus brevis NBRC 100599
SCAFFOLD7443 | 1301 | 1 | 1050 | 0.8070714834742506 | YP_001337736 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578
SCAFFOLD7662 | 3084 | 4 | 2664 | 0.8638132295719845 | [NAME] | Staphylococcus aureus subsp. aureus TCH130
SCAFFOLD7755 | 2002 | 2 | 2049 | 1.023476523476524 | YP_001452801 | Citrobacter [NAME] ATCC BAA-895
SCAFFOLD7811 | 1560 | 2 | 1290 | 0.826923076923077 | ZP_05730468 | Pantoea sp. At-9b
SCAFFOLD7846 | 1466 | 1 | 1110 | 0.7571623465211459 | BAF03595 | Staphylococcus lugdunensis
SCAFFOLD7905 | 1464 | 2 | 1248 | 0.8524590163934426 | YP_001178795 | Enterobacter sp. 638
SCAFFOLD7908 | 1099 | 1 | 1098 | 0.9990900818926298 | ZP_05730857 | Pantoea sp. At-9b
SCAFFOLD7937 | 2692 | 2 | 2721 | 1.010772659732541 | ZP_04818289 | Staphylococcus epidermidis M23864:W1
SCAFFOLD7953 | 1244 | 2 | 1389 | 1.116559485530547 | ZP_03283471 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD7984 | 1202 | 2 | 654 | 0.5440931780366056 | [NAME] | Dickeya zeae Ech1591
SCAFFOLD8251 | 1404 | 4 | 1353 | 0.9636752136752136 | ZP_04944001 | Burkholderia cenocepacia PC184
SCAFFOLD8255 | 1947 | 1 | 1680 | 0.8628659476117103 | YP_001477379 | Serratia proteamaculans 568
SCAFFOLD8287 | 1314 | 1 | 705 | 0.5365296803652968 | YP_001480128 | Serratia proteamaculans 568
SCAFFOLD8300 | 2262 | 2 | 1986 | 0.8779840848806366 | ZP_05730366 | Pantoea sp. At-9b
SCAFFOLD8301 | 954 | 1 | 585 | 0.6132075471698113 | YP_001480143 | Serratia proteamaculans 568
SCAFFOLD8303 | 876 | 1 | 702 | 0.8013698630136986 | YP_001454479 | Citrobacter [NAME] ATCC BAA-895
SCAFFOLD8313 | 2145 | 3 | 2121 | 0.9888111888111888 | YP_001479227 | Serratia proteamaculans 568
SCAFFOLD8317 | 2182 | 4 | 1971 | 0.9032997250229148 | YP_001176243 | Enterobacter sp. 638
SCAFFOLD8337 | 2393 | 3 | 2286 | 0.9552862515670707 | YP_001476392 | Serratia proteamaculans 568
SCAFFOLD8347 | 1055 | 2 | 1014 | 0.9611374407582939 | [NAME] | Serratia proteamaculans 568
SCAFFOLD8354 | 1231 | 2 | 999 | 0.811535337124289 | ZP_03086006 | Escherichia coli O157:H7 str. EC4024
SCAFFOLD8379 | 14352 | 13 | 13881 | 0.9671822742474916 | YP_001479244 | Serratia proteamaculans 568
SCAFFOLD8391 | 1167 | 1 | 927 | 0.7943444730077122 | YP_001480634 | Serratia proteamaculans 568
SCAFFOLD8396 | 823 | 1 | 759 | 0.9222357229647631 | YP_001478401 | Serratia proteamaculans 568
SCAFFOLD8441 | 1324 | 2 | 1104 | 0.8338368580060425 | ZP_02799462 | Escherichia coli O157:H7
SCAFFOLD8443 | 1693 | 3 | 1605 | 0.9480212640283522 | YP_001477609 | Serratia proteamaculans 568
SCAFFOLD8446 | 975 | 1 | 372 | 0.3815384615384615 | ZP_02360416 | Burkholderia oklahomensis [NAME]
SCAFFOLD8447 | 1118 | 2 | 1149 | 1.027728085867621 | AAT90795 | uncultured proteobacterium QS1
SCAFFOLD8460 | 1189 | 2 | 1053 | 0.8856181665264928 | ZP_05732070 | Pantoea sp. At-9b
SCAFFOLD8471 | 1701 | 3 | 1410 | 0.8289241622574955 | ZP_04677896 | Staphylococcus 7603
SCAFFOLD8477 | 1454 | 2 | 1071 | 0.7365887207702887 | YP_001477622 | Serratia proteamaculans 568
SCAFFOLD8479 | 1215 | 2 | 1248 | 1.027160493827161 | ZP_04560088 | Citrobacter sp. 30_2
SCAFFOLD8491 | 1082 | 1 | 762 | 0.7042513863216268 | YP_001480545 | Serratia proteamaculans 568
SCAFFOLD8492 | 887 | 1 | 582 | 0.6561443066516347 | YP_001476376 | Serratia proteamaculans 568
SCAFFOLD8497 | 912 | 1 | 720 | 0.7894736842105263 | YP_001566306 | Delftia acidovorans SPH-1
SCAFFOLD8702 | 10669 | 11 | 9840 | 0.9222982472584123 | YP_001479240 | Serratia proteamaculans 568
SCAFFOLD8755 | 5879 | 5 | 5691 | 0.968021772410274 | YP_001479229 | Serratia proteamaculans 568
SCAFFOLD8780 | 1384 | 2 | 1173 | 0.8475433526011561 | ZP_03283709 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8788 | 1667 | 2 | 1770 | 1.061787642471506 | YP_001479229 | Serratia proteamaculans 568
SCAFFOLD8800 | 2214 | 2 | 2187 | 0.9878048780487805 | ZP_03284119 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8810 | 961 | 1 | 372 | 0.3870967741935484 | ZP_03282755 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8839 | 999 | 1 | 957 | 0.957957957957958 | YP_001176871 | Enterobacter sp. 638
[NAME] | 2032 | 3 | 1896 | 0.9330708661417323 | ZP_03284136 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8846 | 1818 | 3 | 1605 | 0.8828382838283828 | ZP_03282759 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8849 | 1031 | 1 | 807 | 0.7827352085354026 | ZP_03282750 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8853 | 1185 | 1 | 1080 | 0.9113924050632911 | [NAME] | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8877 | 2118 | 2 | 2130 | 1.005665722379603 | YP_002404297 | Escherichia coli
SCAFFOLD8879 | 1557 | 1 | 1554 | 0.998073217726397 | YP_002238889 | Klebsiella pneumoniae 342
SCAFFOLD8885 | 1178 | 1 | 1038 | 0.8811544991511036 | ZP_03282699 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8887 | 1049 | 1 | 249 | 0.2373689227836034 | ZP_03282754 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8908 | 1270 | 1 | 1020 | 0.8031496062992126 | ZP_03284596 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8918 | 1588 | 3 | 1584 | 0.9974811083123426 | ZP_05730898 | Pantoea sp. At-9b
SCAFFOLD8919 | 1007 | 2 | 966 | 0.9592850049652433 | YP_002917446 | Klebsiella pneumoniae NTUH-K2044
SCAFFOLD8926 | 2065 | 2 | 2100 | 1.016949152542373 | ZP_03284139 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8932 | 2313 | 3 | 2253 | 0.9740596627756161 | YP_301014 | Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
SCAFFOLD8953 | 967 | 1 | 738 | 0.7631851085832472 | YP_001176913 | Enterobacter sp. 638
SCAFFOLD8957 | 1045 | 2 | 1056 | 1.010526315789474 | ZP_03282719 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD8962 | 5579 | 4 | 5097 | 0.9136045886359563 | YP_002917357 | Klebsiella pneumoniae NTUH-K2044
SCAFFOLD8970 | 3124 | 3 | 2400 | 0.7682458386683738 | ZP_02911554 | Burkholderia ambifaria [NAME]
SCAFFOLD8987 | 3115 | 3 | 3180 | 1.020866773675762 | AAT90800 | uncultured proteobacterium QS1
SCAFFOLD8988 | 1063 | 2 | 951 | 0.8946378174976481 | YP_001479323 | Serratia proteamaculans 568
SCAFFOLD8993 | 861 | 1 | 858 | 0.9965156794425087 | [NAME] | uncultured proteobacterium QS1
SCAFFOLD8998 | 2143 | 3 | 768 | 0.3583761082594494 | ZP_04560722 | Citrobacter sp. 30_2
SCAFFOLD9216 | 3048 | 4 | 2961 | 0.9714566929133859 | NP_299041 | Xylella fastidiosa 9a5c
SCAFFOLD9233 | 7574 | 7 | 7131 | 0.9415104304198575 | ZP_03282736 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD9392 | 1039 | 1 | 1035 | 0.9961501443695862 | [NAME] | Pantoea sp. At-9b
SCAFFOLD9403 | 1883 | 1 | 1653 | 0.8778544875199149 | ZP_05727712 | Pantoea sp. At-9b
SCAFFOLD9404 | 1298 | 2 | 714 | 0.5500770416024653 | [NAME] | Bacillus thuringiensis serovar aizawai
SCAFFOLD9897 | 1125 | 1 | 801 | 0.7120000000000001 | ZP_04797769 | Staphylococcus epidermidis W23144
SCAFFOLD9925 | 2376 | 2 | 1803 | 0.7588383838383838 | ZP_05732029 | Pantoea sp. At-9b
SCAFFOLD10259 | 5824 | 4 | 6135 | 1.053399725274725 | NP_670966 | Yersinia pestis [NAME]
SCAFFOLD10280 | 2398 | 2 | 3330 | 1.388657214345288 | YP_071046 | Yersinia pseudotuberculosis IP 32953
SCAFFOLD10768 | 6678 | 7 | 5049 | 0.7560646900269542 | ZP_04562040 | Citrobacter sp. 30_2
SCAFFOLD10954 | 1827 | 2 | 1569 | 0.858784893267652 | ZP_05729063 | Pantoea sp. At-9b
SCAFFOLD11181 | 1878 | 2 | 2058 | 1.095846645367412 | YP_001479273 | Serratia proteamaculans 568
SCAFFOLD11298 | 1316 | 1 | 1095 | 0.8320668693009119 | YP_001052677 | Shewanella baltica OS155
SCAFFOLD11348 | 1643 | 2 | 1386 | 0.8435788192331102 | ZP_05731679 | Pantoea sp. At-9b
SCAFFOLD11358 | 2035 | 2 | 1620 | 0.7960687960687962 | EEW41930 | Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
SCAFFOLD11728 | 4327 | 5 | 3375 | 0.7799861335798475 | ZP_05727636 | Pantoea sp. At-9b
SCAFFOLD11731 | 2137 | 2 | 2175 | 1.017781937295274 | ZP_05730209 | Pantoea sp. At-9b
SCAFFOLD11751 | 3276 | 5 | 3048 | 0.9304029304029303 | YP_155465 | Idiomarina loihiensis L2TR
SCAFFOLD11811 | 1222 | 2 | 1050 | 0.8592471358428804 | ZP_03282485 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD12375 | 1359 | 2 | 969 | 0.7130242825607064 | YP_302486 | Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
SCAFFOLD12377 | 1170 | 1 | 795 | 0.6794871794871795 | YP_252662 | Staphylococcus haemolyticus JCSC1435
SCAFFOLD12380 | 1616 | 1 | 870 | 0.5383663366336634 | ZP_05731441 | Pantoea sp. At-9b
SCAFFOLD12409 | 1941 | 2 | 1725 | 0.8887171561051005 | ZP_03284488 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD12491 | 1151 | 1 | 330 | 0.2867072111207645 | YP_002238422 | Klebsiella pneumoniae 342
SCAFFOLD12672 | 4955 | 5 | 4098 | 0.8270433905146316 | YP_300622 | Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
SCAFFOLD12686 | 3252 | 4 | 3228 | 0.9926199261992621 | ZP_05730039 | Pantoea sp. At-9b
SCAFFOLD12711 | 3137 | 4 | 2655 | 0.8463500159387949 | ZP_03086469 | Escherichia coli O157:H7
SCAFFOLD12879 | 2447 | 2 | 2181 | 0.8912954638332651 | ZP_05731423 | Pantoea sp. At-9b
SCAFFOLD12893 | 1578 | 2 | 1617 | 1.024714828897338 | ZP_03281502 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD13214 | 3488 | 3 | 3396 | 0.9736238532110092 | ZP_05727972 | Pantoea sp. At-9b
SCAFFOLD13494 | 1269 | 3 | 1296 | 1.021276595744681 | ZP_05728712 | Pantoea sp. At-9b
SCAFFOLD13776 | 1901 | 2 | 1821 | 0.9579168858495528 | ZP_05731458 | Pantoea sp. At-9b
SCAFFOLD13914 | 1523 | 3 | 1455 | 0.9553512803676953 | ZP_05729459 | Pantoea sp. At-9b
SCAFFOLD14210 | 3117 | 4 | 2406 | 0.7718960538979788 | ZP_03282854 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD14236 | 1957 | 3 | 1776 | 0.9075114971895759 | ZP_03282708 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD14257 | 1666 | 3 | 1659 | 0.9957983193277312 | ZP_01168781 | Bacillus sp. NRRL B-14911
SCAFFOLD14272 | 1798 | 3 | 1599 | 0.889321468298109 | ZP_05730268 | Pantoea sp. At-9b
SCAFFOLD14321 | 1558 | 2 | 1524 | 0.9781771501925546 | ZP_05732476 | Pantoea sp. At-9b
SCAFFOLD14423 | 980 | 2 | 927 | 0.9459183673469389 | ZP_05730910 | Pantoea sp. At-9b
SCAFFOLD14443 | 2091 | 1 | 1806 | 0.8637015781922525 | ZP_05726863 | Pantoea sp. At-9b
SCAFFOLD14467 | 1354 | 2 | 1413 | 1.04357459379616 | ZP_05732494 | Pantoea sp. At-9b
SCAFFOLD14687 | 2336 | 2 | 2106 | 0.901541095890411 | ZP_05732066 | Pantoea sp. At-9b
SCAFFOLD14776 | 992 | 1 | 990 | 0.9979838709677419 | ZP_04560052 | Citrobacter sp. 30_2
SCAFFOLD14963 | 1697 | 3 | 1758 | 1.035945786682381 | ZP_05729805 | Pantoea sp. At-9b
SCAFFOLD15086 | 4730 | 5 | 4401 | 0.9304439746300212 | ZP_03282740 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD15104 | 8487 | 9 | 8001 | 0.9427359490986214 | YP_001353573 | Janthinobacterium sp. Marseille
SCAFFOLD15108 | 3008 | 4 | 3216 | 1.069148936170213 | ZP_05727691 | Pantoea sp. At-9b
SCAFFOLD15132 | 1148 | 1 | 1089 | 0.9486062717770035 | YP_001177835 | Enterobacter sp. 638
SCAFFOLD15170 | 1501 | 1 | 1419 | 0.9453697534976684 | ZP_04817218 | Staphylococcus epidermidis M23864:W1
SCAFFOLD15432 | 2435 | 1 | 780 | 0.3203285420944558 | ZP_03280973 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD15439 | 2783 | 5 | 3591 | 1.290334171757097 | YP_001164016 | Yersinia pestis [NAME]
SCAFFOLD15457 | 5000 | 5 | 3036 | 0.6072 | [NAME] | Enterobacter cancerogenus ATCC 35316
SCAFFOLD15542 | 794 | 2 | 678 | 0.8539042821158689 | YP_003016429 | Pectobacterium carotovorum subsp. carotovorum PC1
SCAFFOLD15544 | 1305 | 1 | 1092 | 0.8367816091954023 | ZP_03827326 | Pectobacterium carotovorum subsp. brasiliensis  PBR1692
SCAFFOLD15596 | 1876 | 3 | 1851 | 0.9866737739872068 | YP_002635229 | Staphylococcus carnosus subsp. carnosus TM300
SCAFFOLD15598 | 2749 | 2 | 2310 | 0.8403055656602401 | ZP_03280624 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD15841 | 8449 | 7 | 6060 | 0.7172446443366078 | [NAME] | Yersinia bercovieri ATCC 43970
SCAFFOLD16147 | 2138 | 2 | 1881 | 0.8797942001870908 | ZP_05726931 | Pantoea sp. At-9b
SCAFFOLD16197 | 1508 | 2 | 1101 | 0.730106100795756 | YP_002560170 | Macrococcus caseolyticus JCSC5402
SCAFFOLD16494 | 1095 | 2 | 1107 | 1.010958904109589 | YP_002560249 | Macrococcus caseolyticus JCSC5402
SCAFFOLD16500 | 1032 | 1 | 1032 | 1 | ZP_03836152 | Citrobacter youngae ATCC 29220
SCAFFOLD16583 | 925 | 2 | 921 | 0.9956756756756758 | YP_174023 | Bacillus clausii KSM-K16
SCAFFOLD16585 | 1127 | 2 | 1122 | 0.9955634427684117 | YP_174023 | Bacillus clausii KSM-K16
SCAFFOLD16614 | 2201 | 2 | 2148 | 0.975920036347115 | ZP_05728521 | Pantoea sp. At-9b
SCAFFOLD16986 | 1434 | 2 | 1440 | 1.00418410041841 | ZP_05729830 | Pantoea sp. At-9b
SCAFFOLD17031 | 1205 | 2 | 1017 | 0.8439834024896266 | BAA34540 | Staphylococcus aureus
SCAFFOLD17033 | 805 | 1 | 504 | 0.6260869565217392 | YP_300408 | Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305
SCAFFOLD17091 | 1155 | 2 | 927 | 0.8025974025974026 | ZP_05727244 | Pantoea sp. At-9b
SCAFFOLD17426 | 4245 | 3 | 3249 | 0.7653710247349824 | ZP_03284122 | Enterobacter cancerogenus ATCC 35316
[NAME] | 3268 | 2 | 2721 | 0.8326193390452876 | ZP_03282698 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD17461 | 2997 | 4 | 2562 | 0.854854854854855 | ZP_05728815 | Pantoea sp. At-9b
SCAFFOLD17508 | 2184 | 3 | 1875 | 0.8585164835164835 | ZP_05729077 | Pantoea sp. At-9b
SCAFFOLD17623 | 1440 | 2 | 1137 | 0.7895833333333333 | ZP_05732203 | Pantoea sp. At-9b
SCAFFOLD17660 | 2777 | 5 | 2541 | 0.9150162045372704 | YP_002635017 | Staphylococcus carnosus subsp. carnosus TM300
SCAFFOLD18059 | 1513 | 1 | 1104 | 0.729676140118969 | ZP_05730280 | Pantoea sp. At-9b
SCAFFOLD18081 | 1357 | 3 | 1398 | 1.030213706705969 | ZP_05731753 | Pantoea sp. At-9b
SCAFFOLD18650 | 954 | 1 | 714 | 0.7484276729559748 | YP_001176065 | Enterobacter sp. 638
[NAME] | 936 | 1 | 609 | 0.6506410256410257 | ZP_05728409 | Pantoea sp. At-9b
SCAFFOLD18991 | 877 | 2 | 861 | 0.9817559863169898 | YP_052083 | Pectobacterium atrosepticum SCRI1043
SCAFFOLD19119 | 862 | 1 | 861 | 0.9988399071925754 | ZP_03281571 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19184 | 855 | 1 | 393 | 0.4596491228070175 | ZP_05732576 | Pantoea sp. At-9b
SCAFFOLD19313 | 841 | 1 | 618 | 0.7348394768133175 | ZP_03281841 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19317 | 841 | 1 | 837 | 0.995243757431629 | [NAME] | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19450 | 826 | 1 | 729 | 0.8825665859564166 | ZP_05730662 | Pantoea sp. At-9b
SCAFFOLD19491 | 823 | 1 | 663 | 0.8055893074119076 | ZP_03282755 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19516 | 820 | 1 | 534 | 0.651219512195122 | EEC84777 | Enterobacter sp. 638
SCAFFOLD19540 | 818 | 1 | 816 | 0.9975550122249389 | ZP_03284547 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19563 | 816 | 1 | 738 | 0.9044117647058824 | ZP_03281560 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19571 | 815 | 1 | 396 | 0.4858895705521473 | ZP_04637023 | Yersinia intermedia ATCC 29909
SCAFFOLD19612 | 810 | 1 | 810 | 1 | YP_001477617 | Serratia proteamaculans 568
SCAFFOLD19637 | 806 | 2 | 912 | 1.13151364764268 | YP_001477815 | Serratia proteamaculans 568
SCAFFOLD19642 | 806 | 1 | 330 | 0.4094292803970223 | ZP_03283574 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19676 | 802 | 2 | 789 | 0.983790523690773 | YP_002225170 | Salmonella enterica subsp. enterica serovar [NAME]  str. 287/91
SCAFFOLD19694 | 800 | 2 | 621 | 0.77625 | AAT50019 | Pseudomonas aeruginosa
SCAFFOLD19704 | 799 | 2 | 732 | 0.9161451814768461 | YP_001476441 | Serratia proteamaculans 568
SCAFFOLD19714 | 797 | 2 | 684 | 0.8582183186951068 | AAM84582 | Yersinia pestis [NAME]
SCAFFOLD19738 | 795 | 1 | 684 | 0.8603773584905661 | YP_001440504 | Enterobacter sakazakii ATCC BAA-894
SCAFFOLD19744 | 794 | 2 | 1287 | 1.620906801007557 | YP_001338833 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578
SCAFFOLD19761 | 791 | 1 | 456 | 0.5764854614412137 | [NAME] | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19771 | 790 | 1 | 708 | 0.8962025316455695 | ZP_03282673 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19776 | 790 | 1 | 741 | 0.9379746835443038 | ZP_03085896 | Escherichia coli O157:H7 str. EC4024
SCAFFOLD19798 | 787 | 2 | 798 | 1.013977128335451 | YP_001480880 | Serratia proteamaculans 568
SCAFFOLD19800 | 787 | 1 | 786 | 0.9987293519695044 | YP_001480688 | Serratia proteamaculans 568
SCAFFOLD19860 | 781 | 1 | 627 | 0.8028169014084507 | YP_001477750 | Serratia proteamaculans 568
SCAFFOLD19870 | 780 | 1 | 771 | 0.9884615384615385 | ZP_03281147 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19871 | 780 | 1 | 480 | 0.6153846153846154 | YP_001565906 | Delftia acidovorans SPH-1
SCAFFOLD19892 | 777 | 1 | 675 | 0.8687258687258688 | ZP_03280941 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD19897 | 777 | 3 | 675 | 0.8687258687258688 | YP_002383011 | Escherichia fergusonii ATCC 35469
SCAFFOLD19901 | 776 | 1 | 549 | 0.7074742268041238 | ABC54997 | Serratia marcescens
SCAFFOLD19909 | 776 | 1 | 774 | 0.9974226804123711 | EEW42318 | Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
SCAFFOLD19911 | 776 | 1 | 675 | 0.8698453608247422 | AAM90723 | Salmonella typhi
SCAFFOLD19926 | 775 | 1 | 708 | 0.9135483870967742 | ZP_02347984 | Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
SCAFFOLD19937 | 774 | 1 | 678 | 0.8759689922480621 | YP_001175028 | Enterobacter sp. 638
SCAFFOLD19968 | 771 | 1 | 459 | 0.5953307392996109 | YP_002981690 | Ralstonia pickettii 12D
SCAFFOLD19971 | 771 | 1 | 477 | 0.6186770428015564 | YP_001480360 | Serratia proteamaculans 568
SCAFFOLD19992 | 769 | 1 | 723 | 0.9401820546163848 | YP_001176039 | Enterobacter sp. 638
SCAFFOLD19993 | 769 | 1 | 567 | 0.7373211963589077 | ZP_05732391 | Pantoea sp. At-9b
SCAFFOLD19994 | 769 | 1 | 465 | 0.6046814044213265 | YP_001454358 | Citrobacter [NAME] ATCC BAA-895
SCAFFOLD20005 | 767 | 1 | 669 | 0.8722294654498044 | YP_002560012 | Macrococcus caseolyticus JCSC5402
SCAFFOLD20029 | 764 | 2 | 573 | 0.75 | YP_001477701 | Serratia proteamaculans 568
SCAFFOLD20032 | 764 | 1 | 669 | 0.8756544502617801 | YP_217572 | Salmonella enterica subsp. enterica Choleraesuis str. SC-B67
SCAFFOLD20054 | 761 | 1 | 615 | 0.8081471747700394 | YP_335468 | Burkholderia pseudomallei  1710b
SCAFFOLD20061 | 760 | 2 | 729 | 0.9592105263157894 | ZP_02347985 | Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29
SCAFFOLD20063 | 759 | 2 | 936 | 1.233201581027668 | YP_001480667 | Serratia proteamaculans 568
SCAFFOLD20079 | 758 | 1 | 552 | 0.7282321899736148 | YP_001451444 | Escherichia coli E24377A
SCAFFOLD20085 | 757 | 1 | 342 | 0.451783355350066 | P52989 | Serratia liquefaciens
SCAFFOLD20090 | 757 | 2 | 759 | 1.002642007926024 | YP_001176705 | Enterobacter sp. 638
SCAFFOLD20092 | 756 | 1 | 237 | 0.3134920634920635 | ACV76394 | Zymomonas mobilis subsp. mobilis
SCAFFOLD20095 | 756 | 2 | 705 | 0.9325396825396826 | ACI84051 | Escherichia coli
SCAFFOLD20100 | 756 | 1 | 519 | 0.6865079365079364 | YP_001174806 | Enterobacter sp. 638
SCAFFOLD20101 | 755 | 1 | 753 | 0.9973509933774836 | YP_001478321 | Serratia proteamaculans 568
SCAFFOLD20108 | 754 | 1 | 630 | 0.8355437665782494 | YP_001477570 | Serratia proteamaculans 568
SCAFFOLD20136 | 751 | 1 | 534 | 0.711051930758988 | ZP_05727703 | Pantoea sp. At-9b
SCAFFOLD20143 | 750 | 2 | 747 | 0.996 | YP_253397 | Staphylococcus haemolyticus JCSC1435
SCAFFOLD20179 | 746 | 1 | 549 | 0.7359249329758714 | YP_001479065 | Serratia proteamaculans 568
SCAFFOLD20196 | 744 | 1 | 741 | 0.9959677419354839 | YP_001478039 | Serratia proteamaculans 568
SCAFFOLD20203 | 744 | 1 | 741 | 0.9959677419354839 | YP_001455251 | Citrobacter [NAME] ATCC BAA-895
SCAFFOLD20209 | 743 | 2 | 639 | 0.8600269179004038 | ACB55419 | Enterobacter cloacae
SCAFFOLD20215 | 743 | 1 | 633 | 0.8519515477792732 | YP_001477511 | Serratia proteamaculans 568
SCAFFOLD20226 | 741 | 1 | 741 | 1 | EEW42318 | Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
SCAFFOLD20229 | 740 | 2 | 735 | 0.9932432432432432 | YP_001479677 | Serratia proteamaculans 568
SCAFFOLD20231 | 740 | 1 | 582 | 0.7864864864864864 | YP_001177698 | Enterobacter sp. 638
SCAFFOLD20268 | 736 | 1 | 708 | 0.9619565217391305 | ZP_04656615 | Salmonella enterica subsp. enterica serovar Tennessee str. [NAME]
SCAFFOLD20293 | 734 | 1 | 507 | 0.6907356948228883 | ZP_04617348 | Yersinia ruckeri
SCAFFOLD20299 | 733 | 1 | 714 | 0.9740791268758526 | AAC82333 | Serratia liquefaciens
SCAFFOLD20305 | 732 | 1 | 732 | 1 | ZP_04677898 | Staphylococcus [NAME]
SCAFFOLD20315 | 732 | 2 | 1458 | 1.991803278688525 | YP_001480880 | Serratia proteamaculans 568
SCAFFOLD20333 | 730 | 1 | 330 | 0.4520547945205479 | YP_002238422 | Klebsiella pneumoniae 342
SCAFFOLD20337 | 729 | 1 | 552 | 0.757201646090535 | ZP_03282445 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD20345 | 729 | 1 | 603 | 0.8271604938271605 | YP_252183 | Staphylococcus haemolyticus JCSC1435
SCAFFOLD20363 | 727 | 1 | 603 | 0.8294360385144429 | YP_001476694 | Serratia proteamaculans 568
SCAFFOLD20370 | 726 | 1 | 606 | 0.8347107438016529 | YP_001479323 | Serratia proteamaculans 568
SCAFFOLD20374 | 726 | 1 | 672 | 0.9256198347107438 | ZP_04627360 | Yersinia bercovieri ATCC 43970
SCAFFOLD20384 | 725 | 1 | 714 | 0.9848275862068967 | YP_001477271 | Serratia proteamaculans 568
SCAFFOLD20385 | 725 | 2 | 756 | 1.042758620689655 | ZP_03821888 | Acinetobacter sp.
SCAFFOLD20408 | 723 | 2 | 1026 | 1.419087136929461 | YP_001480016 | Serratia proteamaculans 568
SCAFFOLD20414 | 722 | 1 | 720 | 0.997229916897507 | YP_001480787 | Serratia proteamaculans 568
SCAFFOLD20418 | 722 | 1 | 606 | 0.8393351800554016 | YP_001476694 | Serratia proteamaculans 568
SCAFFOLD20432 | 721 | 2 | 840 | 1.16504854368932 | ZP_03283597 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD20475 | 717 | 1 | 516 | 0.7196652719665272 | YP_002386009 | Escherichia coli
SCAFFOLD20496 | 715 | 1 | 213 | 0.2979020979020979 | YP_001477100 | Serratia proteamaculans 568
SCAFFOLD20545 | 709 | 1 | 579 | 0.8166431593794076 | ZP_03281620 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD20570 | 707 | 1 | 645 | 0.9123055162659122 | YP_001175546 | Enterobacter sp. 638
SCAFFOLD20585 | 705 | 1 | 399 | 0.5659574468085107 | NP_994354 | Yersinia pestis biovar Microtus str. 91001
SCAFFOLD20600 | 704 | 1 | 408 | 0.5795454545454546 | YP_001479557 | Serratia proteamaculans 568
SCAFFOLD20622 | 703 | 1 | 564 | 0.802275960170697 | ZP_03282738 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD20644 | 701 | 1 | 531 | 0.7574893009985735 | YP_001477503 | Serratia proteamaculans 568
SCAFFOLD20649 | 700 | 2 | 606 | 0.8657142857142859 | YP_001477152 | Serratia proteamaculans 568
SCAFFOLD20747 | 692 | 1 | 213 | 0.3078034682080925 | YP_003038953 | Photorhabdus asymbiotica
SCAFFOLD20749 | 692 | 1 | 444 | 0.6416184971098265 | AAT90804 | uncultured proteobacterium QS1
SCAFFOLD20767 | 690 | 1 | 504 | 0.7304347826086957 | YP_001175314 | Enterobacter sp. 638
SCAFFOLD20783 | 689 | 1 | 687 | 0.9970972423802613 | YP_612027 | Silicibacter sp. TM1040
SCAFFOLD20791 | 688 | 2 | 720 | 1.046511627906977 | ZP_03281147 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD20832 | 684 | 1 | 588 | 0.8596491228070176 | YP_001480564 | Serratia proteamaculans 568
SCAFFOLD20845 | 683 | 1 | 516 | 0.7554904831625183 | YP_001476327 | Serratia proteamaculans 568
SCAFFOLD20893 | 681 | 1 | 417 | 0.6123348017621145 | YP_002351759 | [NAME] monocytogenes HCC23
SCAFFOLD20947 | 677 | 1 | 480 | 0.7090103397341211 | YP_001477730 | Serratia proteamaculans 568
SCAFFOLD21032 | 671 | 1 | 669 | 0.9970193740685543 | YP_001477679 | Serratia proteamaculans 568
[NAME] | 669 | 2 | 627 | 0.9372197309417041 | [NAME] | Enterobacter cancerogenus ATCC 35316
SCAFFOLD21123 | 665 | 2 | 660 | 0.9924812030075187 | NP_286105 | Escherichia coli O157:H7
SCAFFOLD21144 | 663 | 2 | 582 | 0.8778280542986425 | YP_002560012 | Macrococcus caseolyticus JCSC5402
SCAFFOLD21234 | 657 | 1 | 435 | 0.6621004566210046 | ZP_03281682 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD21267 | 655 | 1 | 441 | 0.6732824427480915 | ZP_05380042 | [NAME]. mathranii  str. A3
SCAFFOLD21378 | 646 | 1 | 330 | 0.5108359133126935 | YP_002238422 | Klebsiella pneumoniae 342
SCAFFOLD21393 | 645 | 2 | 912 | 1.413953488372093 | YP_001477664 | Serratia proteamaculans 568
SCAFFOLD21605 | 629 | 1 | 627 | 0.9968203497615262 | ZP_03283730 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD21628 | 626 | 2 | 474 | 0.7571884984025559 | ZP_05730942 | Pantoea sp. At-9b
SCAFFOLD21633 | 626 | 2 | 708 | 1.130990415335463 | YP_001476523 | Serratia proteamaculans 568
SCAFFOLD21650 | 624 | 1 | 582 | 0.9326923076923077 | YP_493044 | Staphylococcus aureus subsp. aureus USA300_FPR3757
SCAFFOLD21655 | 623 | 1 | 468 | 0.7512038523274478 | ZP_03281560 | Enterobacter cancerogenus ATCC 35316
SCAFFOLD21719 | 618 | 1 | 432 | 0.6990291262135923 | YP_001480564 | Serratia proteamaculans 568
SCAFFOLD21752 | 614 | 1 | 612 | 0.996742671009772 | [NAME] | Enterobacter cancerogenus ATCC 35316
SCAFFOLD21842 | 607 | 1 | 603 | 0.9934102141680395 | ZP_04677117 | Staphylococcus [NAME]
SCAFFOLD21874 | 603 | 1 | 390 | 0.646766169154229 | YP_001477748 | Serratia proteamaculans 568
SCAFFOLD21895 | 601 | 1 | 600 | 0.9983361064891847 | YP_001480076 | Serratia proteamaculans 568
[NAME] | 597 | 1 | 324 | 0.542713567839196 | EEW43260 | Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
SCAFFOLD22019 | 584 | 1 | 510 | 0.8732876712328768 | YP_001476523 | Serratia proteamaculans 568
SCAFFOLD22051 | 581 | 1 | 579 | 0.9965576592082617 | YP_003211349 | Cronobacter turicensis
SCAFFOLD22073 | 576 | 1 | 429 | 0.7447916666666666 | YP_001178102 | Enterobacter sp. 638
SCAFFOLD22202 | 556 | 1 | 555 | 0.9982014388489209 | YP_001480652 | Serratia proteamaculans 568
SCAFFOLD22212 | 553 | 1 | 549 | 0.9927667269439421 | EEW38992 | Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884
SCAFFOLD22260 | 541 | 1 | 537 | 0.9926062846580407 | YP_001480652 | Serratia proteamaculans 568
SCAFFOLD22267 | 539 | 1 | 345 | 0.640074211502783 | YP_001178048 | Enterobacter sp. 638
SCAFFOLD22275 | 536 | 1 | 510 | 0.9514925373134329 | YP_002634156 | Staphylococcus carnosus subsp. carnosus TM300
SCAFFOLD22288 | 531 | 1 | 354 | 0.6666666666666666 | YP_001476441 | Serratia proteamaculans 568
SCAFFOLD22330 | 517 | 1 | 372 | 0.7195357833655706 | YP_001477146 | Serratia proteamaculans 568
SCAFFOLD22391 | 491 | 1 | 489 | 0.9959266802443992 | [NAME] | Serratia proteamaculans 568
SCAFFOLD22394 | 490 | 2 | 426 | 0.8693877551020408 | YP_001453578 | Citrobacter [NAME] ATCC BAA-895
SCAFFOLD22415 | 479 | 1 | 264 | 0.5511482254697286 | YP_002467994 | [NAME]. 5A (Acyrthosiphon pisum)
SCAFFOLD22428 | 473 | 1 | 471 | 0.9957716701902748 | YP_001480652 | Serratia proteamaculans 568
SCAFFOLD22508 | 420 | 1 | 201 | 0.4785714285714286 | YP_002638549 | Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594
SCAFFOLD22509 | 419 | 1 | 336 | 0.801909307875895 | YP_001453886 | Citrobacter [NAME] ATCC BAA-895
SCAFFOLD22543 | 394 | 1 | 303 | 0.7690355329949239 | YP_002238999 | Klebsiella pneumoniae 342
SCAFFOLD22550 | 388 | 1 | 264 | 0.6804123711340206 | YP_001176905 | Enterobacter sp. 638
1 Essentially all PPPs in these scaffolds are more similar to bacterial proteins than to invertebarate proteins. Genomic features (e.g. proximity of ORFs, no introns) also suggest that they are parts of bacterial genomes.
2 Ns were not counted.
3 Ratio of the total length of ORFs to the length of the scaffold. Some of the values are larger than 1.0 because of overlapping ORFs.