Spreadsheet: 199a2175-b967-445a-98ea-e9e630c9b631
Sheet: Table S4

Summary
Experiment | [NAME]
Species | Human
Analysis software | Genome Studio v2011.1
Analysis module | [NAME] v1.9
Normalization | Quantile
Background subtraction | Yes
Error model | Illumina custom with [NAME] correction
Content Descriptor | HumanHT-12_V4_0_R2_15002873_B.bgx
Genome build | [NAME]
Detection pvalue filter | 0.05
Differential pvalue filter | 0.01
Column descriptions
ProbeID | [NAME] probe identifier
GeneID | [NAME] gene identifier
Symbol | Official gene symbol
Group1_Signal | Average signal for samples in Group 1
Group2_Signal | Average signal for samples in Group 2
[NAME] corrected DiffPval | [NAME] corrected pvalue for differential expression call
log2FoldChange | log2(Group2_Signal/Group1_Signal)
Regulation | Up if log2FoldChange is positive, [NAME] if log2FoldChange is negative
Group 1 | Group 2 | Filter | #Up-regulated probes | #Down-regulated probes | #Total
MDA231 primary tumor | MDA231 lymph node mets | pvalue 0.01 | 12 | 12 | 24
Article title: A new mouse model for the study of human breast cancer metastasis.
Journal: PLOS ONE
Authors:[NAME], [NAME], [NAME], Sonja [NAME], [NAME], [NAME], [NAME] and [NAME]
Affiliation: University of Miami Miller School of Medicine, Miami, FL, 33136, USA
Corresponding author email address: [EMAIL]
Table S4
Transcripts differentially expressed (p<0.01) in MDA-MB-231 lymph node metastases compared to primary mammary fat pad tumor (total 24)
ProbeID | GeneID | Symbol | PrimaryTumor_Signal | LymphNodeMets_Signal | [NAME] corrected DiffPval | log2FoldChange | Regulation
ILMN_1713369 | 23521 | RPL13A | 2621.608 | 1603.253 | 8.404998e-09 |  | DOWN
ILMN_1737406 | 1316 | [NAME] | 330.9516 | 197.7252 | 3.287572e-07 |  | DOWN
ILMN_2138765 | 123 | PLIN2 | 247.2959 | 139.2913 | 0.0002663319 |  | DOWN
ILMN_1735014 | 1316 | [NAME] | 802.296 | 527.094 | 0.0003823347 |  | DOWN
ILMN_3266944 | 100129599 | LOC100129599 | 1292.698 | 743.4012 | 0.0007670338 |  | DOWN
ILMN_1663042 | 6385 | SDC4 | 375.3758 | 216.9669 | 0.0008827825 |  | DOWN
ILMN_1789702 | 2632 | [NAME] | 331.3771 | 215.9448 | 0.001279297 |  | DOWN
ILMN_1656501 | 1847 | DUSP5 | 391.0945 | 248.9592 | 0.001679281 |  | DOWN
ILMN_1812640 | 196 | AHR | 1100.514 | 765.837 | 0.001679281 |  | DOWN
ILMN_1783709 | 10670 | RRAGA | 579.1508 | 425.9252 | 0.001679281 |  | DOWN
ILMN_1659913 | 3669 | ISG20 | 293.8729 | 173.0252 | 0.004805994 |  | DOWN
ILMN_1670028 | 9663 | LPIN2 | 203.7267 | 125.2532 | 0.008721618 |  | DOWN
ILMN_3267451 | 729403 | GAPDHL6 | 166.9377 | 874.569 | 4.194597e-11 |  | UP
ILMN_1917341 |  |  | 143.8944 | 250.9295 | 0.0003927597 |  | UP
ILMN_1789136 | 10169 | [NAME] | 504.272 | 699.7719 | 0.0005294125 |  | UP
ILMN_1687858 | 805 | CALM2 | 2759.516 | 3650.365 | 0.001265258 |  | UP
ILMN_1775522 | 9500 | MAGED1 | 159.5773 | 266.2796 | 0.001279297 |  | UP
ILMN_1790461 | 84300 | C6orf125 | 262.9968 | 501.7141 | 0.001679281 |  | UP
ILMN_3241853 | 91695 | RRP7B | 8935.222 | 11657.1 | 0.001761499 |  | UP
ILMN_2242491 | 23059 | CLUAP1 | 7397.229 | 9512.27 | 0.002836323 |  | UP
ILMN_1694177 | 5111 | PCNA | 274.0229 | 464.1084 | 0.003257627 |  | UP
ILMN_1706505 | 1289 | COL5A1 | 47.85356 | 152.0485 | 0.004805994 |  | UP
ILMN_2342695 | 5154 | PDGFA | 41.43742 | 137.4713 | 0.009093313 |  | UP
ILMN_1786065 | 29128 | UHRF1 | 465.4771 | 678.9078 | 0.00943267 |  | UP