Spreadsheet: 1ac8f89b-2c4f-4beb-8b48-f9ffbcb2e3e9
Sheet: Sheet1

[NAME]. [NAME] | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | [NAME]. 3UTR | Unnamed: 5 | Unnamed: 6 | putative ortholog D. pseudo. 3UTR | Unnamed: 8 | Unnamed: 9 | [NAME]. 3UTR seq locatoin in genome | Unnamed: 11 | Unnamed: 12
gene | name | FBgn | transcripts | length | matrix hits | putative polyA signal | length | matrix hits | putative polyA signal | coordinates | strand | chr
CG1099 | Dap160 | FBgn0023388 | CG1099-RA_RB | 351 | 15.21(321) | ATTAAA(5) | 450 | NO_HIT | ATTAAA(5) | 21106873-21107223, | - | chr2L
CG11059 | calsyntenin-1 | FBgn0039928 | CG11059-RA_RB | 652 | 13.03(203)n | AATAAA(93) |  | NO_SEQ |  | 1134646-1135297, | - | chr4
CG1107 | auxillin | FBgn0037218 | CG1107-RA_RB | 664 | 10.40(477) | AATAAA(44) | 743 | 10.28(599) | AATAAA(46) | 52580-53243, | + | chr3R
CG1210 | Pk61C | FBgn0020386 | CG1210-RA_RB_RC_RD_RE_RF_RG_RH | 1488 | 10.40(1155)n | AATAAA(32) |  | NO_SEQ |  | 124448-125935, | + | chr3L
CG1522 | cac | FBgn0005563 | CG1522-RA | 2362 | 10.24(1392) | NO_POLYA_SIG | 2749 | NO_HIT | NO_POLYA_SIG | 11664344-11666705, | - | chrX
CG1725 | dlg1 | FBgn0001624 | CG1725-RA_RD | 1572 | 12.57(367)a1 | AATATA(11) | 1778 | 12.57(263) | AATATA(11) | 11148115-11149686, | + | chrX
CG17870 | 14-3-3zeta | FBgn0004907 | CG17870-RA_RB_RC_RD_RE_RG | 2068 | 11.77(1174)a1 | AATAAA(13) | 2473 | 11.77(1165),12.57(1761) | ATTAAA(40) | 5168253-5170320, | + | chr2R
CG17870 | 14-3-3zeta | FBgn0004907 | CG17870-RF | 2228 | 11.77(1334)a1 | AATAAA(13) | 2633 | 11.77(1325),12.57(1921) | ATTAAA(40) | 5167424-5167430,5168100-5170320, | + | chr2R
CG17907 | Ace | FBgn0000024 | CG17907-RA | 1421 | [NAME], 10.34(1229)a2 | ATTAAA(28) | 1714 | 14.78(927),10.34(1520) | ATTAAA(32) | 9053981-9055401, | - | chr3R
CG3161 | [NAME] | FBgn0004145 | CG3161-RA_RB_RC_RD | 560 | 10.40(201) | ATTAAA(47) | 527 | NO_HIT | ATTAAA(44) | 1687815-1688374, | - | chr2R
CG32490 | complexin | FBgn0041605 | CG32490-RA_RC | 2782 | 12.20(1388) | AATAAA(37) | 2652 | NO_HIT | AATAAA(57) | 123280-124306,125511-127265, | + | chr3R
CG32490 | complexin | FBgn0041605 | CG32490-RG_RH_RI | 2779 | 12.20(1388) | AATAAA(34) | 2649 | NO_HIT | AATAAA(54) | 123280-124306,125511-127262, | + | chr3R
CG4209 | CanB | FBgn0010014 | CG4209-RA | 621 | 10.24(37) | ATTAAA(18) | 1363 | NO_HIT | ATTAAA(18) | 5074529-5075149, | + | chrX
CG4427 | EP2237 | FBgn0043364 | CG4427-RA_RB | 553 | 10.40(318) | [NAME]) | 611 | NO_HIT | [NAME]) | 478102-478654, | - | chr2L
CG5393 | apt | FBgn0015903 | CG5393-RA_RB_RC_RD_RE | 1176 | 10.40(555)a1 | NO_POLYA_SIG | 1364 | 10.40(560) | NO_POLYA_SIG | 18642093-18643268, | + | chr2R
CG5864 | AP-1sigma | [NAME] | CG5864-RA | 463 | 10.78(149) | AATAAA(32) | 407 | NO_HIT | AATAAA(32) | 19778472-19778934, | + | chr3R
CG6027 | cdi | FBgn0004876 | [NAME] | 1738 | 11.02(772) | AATAAA(24) | 1666 | 10.28(1204) | AATAAA(22) | 14870621-14872358, | - | chr3R
CG6395 | Csp | FBgn0004179 | CG6395-RA | 1979 | 13.95(87), 10.13(1537)a1 | AATAAA(17) | 2508 | 10.13(1936) | AATAAA(44) | 22189046-22191024, | + | chr3L
CG6395 | Csp | FBgn0004179 | CG6395-RB_RC | 1358 | 10.13(916)a1 | AATAAA(17) | 1726 | 10.13(1154) | AATAAA(44) | 22189667-22191024, | + | chr3L
CG7057 | AP-50 | FBgn0024832 | CG7057-RA_RB | 574 | 13.53(430) | AATAAA(25) | 583 | 13.03(304) | AATAAA(22) | 18280416-18280989, | + | chr3R
CG7503 | Con | FBgn0005775 | CG7503-RA | 856 | 15.21(57)a1 | AATAAA(19) | 1213 | 15.21(66) | AATAAA(19) | 4916356-4917211, | - | chr3L
CG7734 | shn | FBgn0003396 | CG7734-RA_RB_RC | 1202 | 10.78(895)a1, 14.78(983)a2 | AATAAA(9) | 1386 | 10.78(1063),14.78(1157) | AATAAA(9) | 6280941-6282142, | + | chr2R
CG8095 | scb | FBgn0003328 | CG8095-RA_RB | 786 | 13.03(664) | AATAAA(25) | 556 | NO_HIT | AATAAA(35) | 10321438-10322223, | + | chr2R
CG8118 | mam | FBgn0002643 | CG8118-RA_RB | 2445 | 10.40(1037)n | AATAAA(25) |  | NO_SEQ |  | 9122626-9125070, | + | chr2R
CG8156 | Arf51F | FBgn0013750 | CG8156-RA_RB_RC_RD_RE | 553 | 13.46(481)o1 | AATAAA(20) | 556 | 13.46(487) | AATAAA(16) | 10388067-10388619, | + | chr2R
CG8203 | Cdk5 | FBgn0013762 | CG8203-RA | 605 | 10.34(337)n | AATAAA(18) |  | NO_SEQ |  | 10633255-10633859, | - | chr2R
CG8487 | garz | FBgn0033714 | CG8487-RB | 329 | 10.78(288)o1 | ATTAAA(20) | 393 | 10.78(355) | AATATA(12) | 7398207-7398535, | + | chr2R
CG9366 | [NAME] | FBgn0014380 | CG9366-RA | 225 | 13.03(192) | AATAAA(14) | 232 | NO_HIT | AATATA(5) | 5322933-5323157, | - | chr3R
Notations for some columns
FBgn: FlyBase gene ID
transcripts: the transcripts that share the same 3UTR. For example, CG6395-RB_RC means CG6395-RB and CG6395-RC, whose 3UTR are identical.
matrix hits: the sites in the 3UTR sequence whose matrix score is above the threshold 10. The format is: score(coordinate). The coordinate corresponds to the first position in the matrix an is referred to the stop codon (the first nucleotide of the stop codon as coordinate 1).
The suffixes in D. mel. matrix hits represent the conservation between D. mel. and D. pseudo. Example: a2 - the predicted site is aligned with the second predicted site in D. pseudo. o1 - the predicted site overlaps with the first predicted site in D. pseudo.  n - correspondent 3'UTR sequence in D. pseudo is not available.
putative polyA signal: the number in the parentheses is the distance to the end of the 3UTR. The presence of a putative polyA signal provides more confidence that the 3UTR is complete.