Spreadsheet: 2109d128-b978-4e29-85bd-d772c5d0d5d6
Sheet: Sheet1

Table S4. Redundant TEs from Repbase and Piler-DF predictions. TE annotations are from (S10-S12).
assigned group name
agam.group.1 | agam.1.359.centroid | agam.55.91.centroid
agam.group.2 | agam.102.96.centroid | agam.128.147.centroid
[NAME] | agam.129.150.centroid | agam.198.297.centroid | agam.76.54.centroid
agam.group.4 | agam.14.314.centroid | agam.14.133.centroid
agam.group.5 | agam.151.196.centroid | agam.97.88.centroid
agam.group.6 | agam.170.240.centroid | agam.197.293.centroid | agam.169.237.centroid
[NAME] | [NAME] | agam.108.109.centroid
agam.group.8 | agam.184.276.centroid | agam.35.233.centroid
[NAME] | agam.185.277.centroid | agam.129.150.centroid
agam.group.10 | agam.187.279.centroid | agam.50.161.centroid
agam.group.11 | agam.19.236.centroid | agam.19.298.centroid
agam.group.12 | agam.20.294.centroid | [NAME]
agam.group.13 | agam.203.309.centroid | agam.31.246.centroid | agam.95.84.centroid
agam.group.14 | agam.204.312.centroid | agam.62.10.centroid
agam.group.15 | agam.21.270.centroid | agam.21.103.centroid
agam.group.16 | agam.22.68.centroid | agam.22.288.centroid
agam.group.17 | agam.228.353.centroid | agam.52.87.centroid | agam.52.99.centroid | agam.111.112.centroid
agam.group.18 | agam.234.362.centroid | agam.68.28.centroid
agam.group.19 | agam.24.251.centroid | agam.24.206.centroid | agam.91.79.centroid
agam.group.20 | agam.24.51.centroid | agam.24.280.centroid
agam.group.21 | agam.26.23.centroid | agam.26.187.centroid
[NAME] | agam.28.269.centroid | agam.28.5.centroid
agam.group.23 | agam.29.259.centroid | agam.29.247.centroid
agam.group.24 | agam.32.245.centroid | agam.32.104.centroid | agam.32.204.centroid
agam.group.25 | agam.33.136.centroid | agam.33.242.centroid | agam.141.179.centroid
agam.group.26 | agam.35.234.centroid | agam.35.233.centroid
agam.group.27 | agam.36.80.centroid | [NAME]
agam.group.28 | agam.37.209.centroid | agam.37.227.centroid
[NAME] | agam.38.218.centroid | agam.181.268.centroid
agam.group.30 | agam.42.205.centroid | agam.42.27.centroid
agam.group.31 | agam.45.186.centroid | agam.45.189.centroid
agam.group.32 | agam.46.20.centroid | agam.46.170.centroid | agam.46.160.centroid
[NAME] | agam.48.47.centroid | agam.48.171.centroid
agam.group.34 | agam.49.142.centroid | agam.49.166.centroid
agam.group.35 | agam.5.46.centroid | agam.5.178.centroid | agam.5.114.centroid
agam.group.36 | agam.50.161.centroid | agam.50.26.centroid | agam.187.279.centroid
[NAME] | agam.52.99.centroid | agam.52.87.centroid | agam.52.48.centroid | agam.208.317.centroid | [NAME] | agam.228.353.centroid
agam.group.38 | agam.56.85.centroid | agam.56.77.centroid
agam.group.39 | agam.58.2.centroid | agam.153.199.centroid
agam.group.40 | agam.6.231.centroid | agam.6.167.centroid | agam.6.65.centroid | agam.6.219.centroid | agam.6.336.centroid | agam.6.257.centroid
agam.group.41 | agam.80.61.centroid | agam.88.75.centroid
BARI1 | BARI1 | dpse.0.110.centroid
BEL | BEL_LTR | dmel.24.28.centroid | [NAME]
BS | BS | dmel.29.41.centroid
dana.group.1 | dana.0.253.centroid | dana.0.56.centroid | dana.23.208.centroid
dana.group.2 | dana.1.245.centroid | dana.1.270.centroid
dana.group.3 | dana.100.157.centroid | dana.99.156.centroid
dana.group.4 | dana.117.200.centroid | dana.43.30.centroid
dana.group.5 | dana.12.240.centroid | dana.42.29.centroid | dana.5.0.centroid | dana.5.1.centroid | dana.5.101.centroid | dana.5.127.centroid | dana.5.128.centroid
dana.group.5 (cont'd) | dana.5.13.centroid | dana.5.135.centroid | dana.5.14.centroid | dana.5.140.centroid | dana.5.144.centroid | dana.5.151.centroid | dana.5.211.centroid
Table S4. Redundant TEs from Repbase and Piler-DF predictions (cont'd)
assigned group name
dana.group.5 (cont'd) | dana.5.214.centroid | dana.5.248.centroid | dana.5.254.centroid | dana.5.256.centroid | dana.5.27.centroid | dana.5.3.centroid | dana.5.79.centroid
dana.group.5 (cont'd) | dana.73.104.centroid | dyak.0.3.centroid
dana.group.6 | dana.12.34.centroid | dana.12.240.centroid
[NAME] | dana.121.212.centroid | dana.91.137.centroid
[NAME] | dana.126.223.centroid | dana.22.76.centroid
dana.group.9 | dana.13.192.centroid | dana.13.235.centroid
dana.group.10 | dana.14.41.centroid | dana.14.231.centroid
dana.group.11 | dana.146.273.centroid | dana.4.262.centroid
dana.group.12 | dana.15.108.centroid | dana.15.39.centroid | dana.15.189.centroid | dana.15.230.centroid | dmel.3.9.centroid | dana.15.54.centroid | dana.15.122.centroid
dana.group.13 | dana.15.230.centroid | dana.15.54.centroid | dana.15.189.centroid | dana.15.122.centroid
dana.group.14 | dana.16.120.centroid | dana.16.16.centroid | dana.16.229.centroid | dana.16.124.centroid | dana.16.8.centroid
dana.group.15 | dana.17.58.centroid | dana.17.134.centroid | dana.17.224.centroid | dana.17.84.centroid
dana.group.16 | dana.18.171.centroid | dana.18.216.centroid | dana.14.231.centroid
dana.group.17 | dana.18.216.centroid | [NAME]
dana.group.18 | dana.21.63.centroid | dana.21.210.centroid
dana.group.19 | dana.27.172.centroid | dana.27.146.centroid
dana.group.20 | dana.28.138.centroid | dana.28.163.centroid
dana.group.21 | dana.29.162.centroid | dana.29.130.centroid | dana.105.167.centroid
dana.group.22 | dana.3.236.centroid | dana.65.89.centroid
dana.group.23 | dana.30.150.centroid | dana.30.33.centroid
dana.group.24 | dana.33.94.centroid | dana.33.28.centroid | dana.127.225.centroid
dana.group.25 | dana.36.11.centroid | dana.24.47.centroid
dana.group.26 | dana.4.175.centroid | dana.4.174.centroid | dana.4.262.centroid
dana.group.27 | dana.49.52.centroid | dana.72.102.centroid
dana.group.28 | dana.7.188.centroid | dana.7.180.centroid | dana.7.259.centroid
dana.group.29 | dana.80.113.centroid | dana.74.105.centroid
[NAME] | dana.9.24.centroid | dana.9.75.centroid | dana.9.252.centroid
dana.group.31 | dana.96.153.centroid | dana.32.126.centroid | dana.32.43.centroid
dere.group.1 | dere.3.3.centroid | dere.11.11.centroid
dere.group.2 | dere.7.7.centroid | dana.139.258.centroid
[NAME] | dere.8.8.centroid | dere.6.6.centroid
dere.group.4 | [NAME] | [NAME]
DIVER | DIVER_LTR | dmel.26.34.centroid | DIVER_I
412 | DM412_I | dmel.5.32.centroid | dmel.5.31.centroid | DM412B_LTR
NOMAD | dmel.0.47.centroid | dmel.0.16.centroid | NOMAD_I | NOMAD_LTR
BURDOCK | dmel.1.19.centroid | BURDOCK_I | BURDOCK_LTR | dmel.1.46.centroid
DOC6 | [NAME] | DOC6_DM
BLOOD | [NAME] | BLOOD_I | BLOOD_LTR
I | dmel.14.7.centroid | I_DM
BLASTOPIA | dmel.17.11.centroid | BLASTOPIA_I | BLASTOPIA_LTR
COPIA | dmel.19.15.centroid | COPIA_DM_I | COPIA_DM_LTR
FW | dmel.2.0.centroid | FW
DMRT1B | dmel.22.26.centroid | DMRT1B
BARI_DM | dmel.25.33.centroid | BARI_DM
DMRT1A | dmel.27.38.centroid | DMRT1A
INVADER1_I | dmel.30.42.centroid | INVADER1_LTR | INVADER1_I
BS2 | dmel.31.43.centroid | BS2
GYPSY | dmel.34.48.centroid | GYPSY_LTR | GYPSY_I
[NAME] | dmel.4.2.centroid | [NAME]
ROO | dmel.8.13.centroid | dmel.8.17.centroid | dmel.8.24.centroid | ROO_I | ROO_LTR
Table S4. Redundant TEs from Repbase and Piler-DF predictions (cont'd)
assigned group name
[NAME] | dmel.9.21.centroid | DM297_I | [NAME]
PROTOP | DMHMR1 | PROTOP | dmel.7.14.centroid
[NAME] | dmoj.2.74.centroid | dmoj.2.91.centroid
dmoj.group.2 | dmoj.4.88.centroid | dmoj.4.42.centroid
dmoj.group.3 | dmoj.44.76.centroid | dmoj.52.97.centroid
dmoj.group.4 | dmoj.5.28.centroid | dmoj.5.80.centroid
dmoj.group.5 | dmoj.6.18.centroid | dmoj.6.78.centroid
dmoj.group.6 | dmoj.7.20.centroid | dmoj.7.58.centroid | dwil.7.2.centroid | dyak.0.5.centroid | [NAME] | dwil.7.31.centroid | dyak.0.6.centroid
dmoj.group.6 (cont'd) | dwil.7.28.centroid | dwil.7.117.centroid | dyak.0.47.centroid | dyak.0.35.centroid | dyak.0.22.centroid
dper.group.1 | dper.0.0.centroid | dpse.4.37.centroid
[NAME] | dper.18.18.centroid | dper.22.22.centroid | dper.27.27.centroid | dper.5.5.centroid | dpse.1.1.centroid | [NAME] | dpse.1.16.centroid
[NAME] (cont'd) | dpse.1.17.centroid | dpse.1.20.centroid | dpse.1.22.centroid | dpse.1.30.centroid | dpse.1.41.centroid | dpse.1.56.centroid | dpse.1.60.centroid
[NAME] (cont'd) | dpse.1.64.centroid | [NAME] | dpse.1.69.centroid | dpse.1.79.centroid | dpse.1.84.centroid | dpse.1.88.centroid | dpse.1.9.centroid
[NAME] (cont'd) | dpse.55.112.centroid
[NAME] | dper.32.32.centroid | dpse.50.106.centroid
[NAME] | dpse.0.103.centroid | dpse.0.110.centroid
dpse.group.2 | dpse.1.17.centroid | dper.27.27.centroid | dpse.1.16.centroid | dpse.1.102.centroid | dpse.1.20.centroid | dper.18.18.centroid | dper.11.11.centroid
dpse.group.2 (cont'd) | dpse.1.88.centroid | dpse.1.95.centroid | dpse.55.112.centroid
[NAME] | dpse.1.9.centroid | dpse.1.69.centroid | dpse.1.17.centroid | dpse.1.20.centroid | dpse.1.102.centroid | [NAME] | dpse.1.22.centroid
[NAME] (cont'd) | dper.5.5.centroid | [NAME] | dpse.1.54.centroid | ISFUN1
dpse.group.4 | dpse.10.40.centroid | dper.16.16.centroid
dpse.group.5 | dpse.11.3.centroid | dpse.11.34.centroid
dpse.group.6 | dpse.24.44.centroid | dpse.14.24.centroid | dpse.5.57.centroid | dpse.39.85.centroid
dpse.group.7 | dpse.29.55.centroid | dpse.13.21.centroid
dpse.group.8 | dpse.47.100.centroid | dper.31.31.centroid
DIVER2 | [NAME] | DIVER2_I | DIVER2_LTR
R1 | dsec.9.9.centroid | R1_DM
dsim.group.1 | dsim.2.2.centroid | dsec.21.21.centroid | dsim.3.3.centroid | dsim.1.1.centroid | dsec.24.24.centroid | dsec.4.4.centroid | dsim.2.2.centroid
dsim.group.1(cont'd) | dsec.21.21.centroid | dsim.3.3.centroid | dsim.1.1.centroid | dsec.24.24.centroid | dsec.4.4.centroid
dsim.group.2 | dsim.6.6.centroid | dsec.15.15.centroid | dsec.15.15.centroid
dvir.group.1 | dvir.0.10.centroid | dvir.0.100.centroid | dvir.0.14.centroid | dvir.0.18.centroid | dvir.0.42.centroid | dvir.0.5.centroid | dvir.0.74.centroid
dvir.group.1 (cont'd) | dvir.0.85.centroid
dvir.group.2 | dvir.13.52.centroid | dvir.13.20.centroid | dvir.13.0.centroid | dvir.13.51.centroid
dvir.group.3 | dvir.15.21.centroid | dvir.15.30.centroid | dvir.14.34.centroid
dvir.group.4 | dvir.16.2.centroid | dvir.16.17.centroid | dvir.11.23.centroid | dvir.11.33.centroid
[NAME] | dvir.2.37.centroid | TV1I | dvir.2.36.centroid | dvir.2.95.centroid | dvir.2.28.centroid | dvir.2.49.centroid | TV1LTR
[NAME] (cont'd) | dvir.2.53.centroid
dvir.group.6 | dvir.21.15.centroid | ULYSSES_LTR
[NAME] | dvir.33.77.centroid | dvir.39.99.centroid
[NAME] | dvir.4.73.centroid | dvir.4.71.centroid
dvir.group.9 | dvir.5.67.centroid | dvir.5.86.centroid | dvir.5.60.centroid | dvir.5.70.centroid
dvir.group.10 | dvir.7.35.centroid | dvir.7.88.centroid
dwil.group.1 | dwil.0.124.centroid | dwil.0.143.centroid
dwil.group.2 | dwil.1.142.centroid | dwil.1.25.centroid | dwil.1.26.centroid | dwil.57.43.centroid | dwil.7.110.centroid | dwil.7.136.centroid | dwil.7.2.centroid
dwil.group.2 (cont'd) | dwil.7.28.centroid | dwil.7.31.centroid | [NAME]
[NAME] | dwil.18.119.centroid | dwil.18.104.centroid | dwil.18.19.centroid | dwil.18.41.centroid
dwil.group.4 | dwil.20.115.centroid | MAR_DW
dwil.group.5 | dwil.25.99.centroid | dwil.25.107.centroid
dwil.group.6 | dwil.28.21.centroid | dwil.28.64.centroid | dwil.28.35.centroid
dwil.group.7 | dwil.3.87.centroid | dwil.3.140.centroid | dwil.3.59.centroid
Table S4. Redundant TEs from Repbase and Piler-DF predictions (cont'd)
assigned group name
[NAME] | dwil.39.79.centroid | dwil.39.8.centroid
dwil.group.9 | dwil.41.76.centroid | dwil.41.50.centroid
dwil.group.10 | dwil.6.22.centroid | dwil.6.100.centroid | dwil.6.108.centroid | dwil.6.91.centroid | dwil.6.27.centroid | dwil.6.123.centroid | dwil.6.62.centroid
[NAME] (cont'd) | dwil.6.97.centroid | dwil.6.55.centroid | dwil.6.94.centroid | [NAME] | dwil.6.91.centroid | dwil.6.108.centroid | dwil.6.22.centroid
[NAME] (cont'd) | dwil.6.94.centroid | dwil.6.27.centroid | dwil.6.97.centroid | dwil.6.55.centroid | dwil.6.11.centroid | dwil.6.62.centroid | dwil.6.100.centroid
[NAME] (cont'd) | dwil.6.22.centroid | dwil.6.91.centroid | dwil.6.108.centroid | dwil.6.94.centroid | dwil.6.27.centroid | dwil.6.123.centroid | dwil.6.62.centroid
[NAME] (cont'd) | dwil.6.55.centroid | dwil.6.4.centroid | dwil.6.97.centroid | dwil.6.11.centroid | [NAME] | dwil.6.62.centroid | dwil.6.90.centroid
[NAME] (cont'd) | dwil.6.55.centroid | dwil.6.123.centroid | dwil.6.97.centroid | [NAME] | dwil.6.100.centroid | dwil.6.91.centroid
dwil.group.11 | [NAME] | dwil.10.132.centroid | dwil.28.21.centroid | dmoj.1.86.centroid | dmoj.1.7.centroid | dmoj.1.49.centroid | [NAME]
dwil.group.12 | dwil.68.3.centroid | [NAME]
dyak.group.1 | [NAME] | [NAME] | dyak.0.6.centroid | dyak.0.40.centroid | dyak.0.5.centroid | [NAME] | dyak.0.0.centroid
dyak.group.1 (cont'd) | dyak.0.39.centroid | dyak.0.26.centroid | dyak.0.8.centroid | dyak.0.45.centroid | dyak.0.7.centroid | dyak.0.23.centroid | dyak.0.15.centroid
dyak.group.1 (cont'd) | dyak.0.35.centroid | dyak.0.32.centroid | dyak.0.47.centroid | DNAREP1_DM | dyak.0.3.centroid | dyak.0.20.centroid | dyak.0.22.centroid
dyak.group.1 (cont'd) | dyak.7.11.centroid | dyak.0.36.centroid | dyak.0.12.centroid | dwil.7.117.centroid | dyak.17.41.centroid
dyak.group.2 | dyak.1.13.centroid | dyak.1.31.centroid
[NAME] | dyak.14.34.centroid | dmel.18.12.centroid | MDG3_DM
dyak.group.4 | dyak.2.16.centroid | dyak.2.9.centroid
GYPSY_3 | GYPSY3_LTR | dmel.21.22.centroid | GYPSY3_I | Gypsy1-I_DM
HMSBEAGLE | HMSBEAGLE_I | dmel.20.18.centroid
HOBO | HOBO | [NAME]
M4DM | M4DM | dmel.12.4.centroid
MINOS | MINOS | dmoj.11.0.centroid
NTS_DM | NTS_DM | dsec.3.3.centroid
POGO | [NAME] | dmel.28.40.centroid | POGO
QUASIMODO_I | QUASIMODO_I | dmel.23.27.centroid
S_DM | S_DM | dmel.11.3.centroid
SAR2_DM | SAR2_DM | dyak.8.14.centroid
TABOR | TABOR_LTR | dsim.0.0.centroid | TABOR_I
TIRANT | TIRANT_I | dmel.6.30.centroid | dmel.6.25.centroid | TIRANT_LTR
TRAM | TRAM_LTR | dpse.9.45.centroid | dpse.9.11.centroid | TRAM_I
TRANSPAC | TRANSPAC_I | dmel.16.10.centroid | TRANSPAC_LTR
WORF | WORF_DMi | dpse.8.28.centroid