Spreadsheet: 860d59c9-918a-491c-a7e0-59f9282697b2
Sheet: S4a Additional Validation

Chr | pos | status | lab
1 | 15362712 | VAL | LSU-PRELIM-XP
1 | 23853721 | VAL | EMBL
1 | 36988396 | VAL | EMBL
1 | 47510420 | INV | LSU-XTRA
1 | 57844449 | VAL | EMBL
1 | 72286696 | VAL | LSU-PRELIM-XP
1 | 104855616 | VAL | Yale
1 | 105032630 | VAL | LSU-PRELIM-IP
1 | 111833801 | VAL | LSU-XTRA
1 | 112793531 | VAL | EMBL
1 | 118882215 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | Chimp | Chimp | Detected subject(s) | Notes
1 | 145124835 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
1 | 163925924 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19238,NA19239,NA19240
1 | 179867910 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
1 | 183771339 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
1 | 186441264 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
1 | 186453074 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
1 | 210032304 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
1 | 216822556 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
1 | 217641307 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
1 | 220937319 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
1 | 230654388 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
1 | 231585747 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
1 | 232137186 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
1 | 244055929 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
1 | 244473326 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
2 | 19940312 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
2 | 31380959 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA12892
2 | 36234767 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
2 | 40467190 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
2 | 46049698 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19239
2 | 49633925 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239
2 | 80622516 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
2 | 126358111 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA12892
2 | 146737393 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
2 | 180708789 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
2 | 184833849 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
2 | 214909884 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
2 | 223591123 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
3 | 2936993 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19238,NA19240
3 | 4180160 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
3 | 6370822 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239
3 | 12793458 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
3 | 15269327 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
3 | 37336581 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
3 | 50854163 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19239
3 | 67653166 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA12892,NA19239,NA19240
3 | 101659955 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892,NA19238,NA19239,NA19240
3 | 104936079 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA12892,NA19238,NA19239,NA19240
3 | 116397783 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
3 | 125889202 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
3 | 152631237 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
3 | 172801977 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892
3 | 173805647 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA12892
3 | 175893438 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 1 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
3 | 177156625 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
3 | 185756272 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19239,NA19240
4 | 10331387 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
4 | 27929867 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 1 | 1 | NA12878,NA12891,NA19238,NA19239,NA19240
4 | 52556352 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
4 | 53546608 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
4 | 60738585 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
4 | 66789210 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
4 | 77212839 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
4 | 79092816 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
4 | 86689402 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892,NA19238,NA19240
4 | 112848417 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19239,NA19240 | False positive 2p
4 | 138396782 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240 | False positive 2p
4 | 138408741 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
4 | 152952280 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19238,NA19240
4 | 155726028 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
4 | 172525416 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
4 | 174299380 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
4 | 175023282 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
4 | 179681714 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
5 | 4128833 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
5 | 10254728 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
5 | 18605916 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
5 | 18994222 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892,NA19239,NA19240
5 | 42755695 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
5 | 61892864 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891
5 | 68299225 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
5 | 73181656 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 1 | 0 | NA12878,NA12891,NA12892,NA19239
5 | 74359538 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
5 | 76404683 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
5 | 86408453 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
5 | 89486536 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
5 | 95019950 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19238,NA19240
5 | 99327802 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
5 | 110113826 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
5 | 122610705 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
5 | 155188918 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19240
5 | 156499312 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
5 | 168844506 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19238,NA19239,NA19240
6 | 2719015 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892,NA19238,NA19239,NA19240
6 | 24086332 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
6 | 28401298 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891 | False positive 2p
6 | 29926838 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19238,NA19239
6 | 40839406 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
6 | 55115878 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA12892
6 | 57511498 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19238,NA19239,NA19240
6 | 57552917 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
6 | 68370772 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12892,NA19238
6 | 69600178 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
6 | 70384454 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
6 | 72637204 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892,NA19238
6 | 72810094 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892,NA19238,NA19239,NA19240
6 | 93632861 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
6 | 96615901 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19239,NA19240
6 | 98358049 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
6 | 110209674 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
6 | 116950830 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892,NA19239,NA19240
6 | 120609952 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239
6 | 123895634 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892,NA19238,NA19239,NA19240
6 | 125463106 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891
6 | 131315183 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
6 | 140311123 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
6 | 141812571 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
6 | 157888724 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19238,NA19239
6 | 159124418 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
7 | 38175724 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19240
7 | 52775794 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
7 | 69826625 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892,NA19238
7 | 84739661 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892,NA19239,NA19240
7 | 84882681 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19238
7 | 94939115 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
7 | 105351686 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238
7 | 114743837 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892,NA19238,NA19239,NA19240
7 | 147216708 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
7 | 157141539 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
8 | 15443717 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
8 | 16147184 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239
8 | 24982460 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
8 | 59778536 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
8 | 91169812 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
8 | 114862090 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
8 | 125959138 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
8 | 132447054 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
8 | 141117253 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12892
8 | 143327057 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19239,NA19240
9 | 16672302 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
9 | 32453884 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA12892,NA19238,NA19239,NA19240
9 | 37584236 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892,NA19239,NA19240
9 | 91137493 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
9 | 109802473 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19238,NA19239,NA19240
9 | 112611049 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
9 | 128019988 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19239,NA19240
9 | 128634403 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891
10 | 6311114 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
10 | 9550990 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
10 | 21728230 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
10 | 25747709 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
10 | 27969931 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240 | False positive 2p
10 | 29142536 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
10 | 30790434 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
10 | 32321245 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
10 | 36035060 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
10 | 61794860 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19238,NA19240
10 | 70031605 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
10 | 72863547 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
10 | 73663272 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
10 | 89804955 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
10 | 98408573 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
10 | 107881539 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12892
10 | 116996319 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891
10 | 123218982 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
11 | 5319096 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
11 | 23227302 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
11 | 38757645 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19239,NA19240
11 | 41788382 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
11 | 43313552 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
11 | 43833995 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
11 | 57530697 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12891,NA19238,NA19239,NA19240
11 | 60901777 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
11 | 62460232 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19239
11 | 65260051 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19239
11 | 87879772 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12892
11 | 103649957 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
11 | 133810851 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891
12 | 1960102 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892
12 | 12824962 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19240
12 | 18787452 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19239,NA19240
12 | 19697485 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA19238,NA19240
12 | 20799939 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
12 | 26588865 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
12 | 39046444 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
12 | 43350649 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
12 | 44461427 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
12 | 44934342 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19240
12 | 60124776 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
12 | 82610244 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12891,NA12892,NA19238,NA19239,NA19240
12 | 86862300 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238
12 | 125455816 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
13 | 20792780 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19238,NA19240
13 | 33636959 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239,NA19240
13 | 45641804 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19238,NA19239,NA19240
13 | 55084559 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19239
13 | 66801467 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
13 | 68568755 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
13 | 78157802 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
13 | 78169600 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
13 | 84371574 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
13 | 86190958 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19240
13 | 98880616 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
13 | 109548406 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA12878
14 | 29924429 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
14 | 33563089 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878
14 | 50501833 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
14 | 59645228 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
14 | 76364770 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
14 | 83702492 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
14 | 88002024 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
14 | 90809441 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
14 | 92030234 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
14 | 92900693 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
14 | 97887678 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
15 | 31819134 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
15 | 42289309 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA19240,NA19240,NA19240,NA19240,NA12878,NA12878,NA19240
15 | 45294618 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
15 | 60105578 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240
15 | 77582928 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
15 | 81348682 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878 | False positive 2p
15 | 93928787 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
15 | 95386935 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12878,NA19240
16 | 2352366 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
16 | 30915519 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
16 | 64039688 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA19240
16 | 79254492 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
16 | 80501637 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA19240,NA12878,NA12878,NA19240
16 | 85117868 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
17 | 8391174 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
17 | 14468355 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
17 | 31461667 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
17 | 33243442 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
17 | 40719771 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA19240,NA19240
17 | 44727771 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | paralog | paralog | NA19240 | paralog
17 | 65868998 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA19240,NA12878,NA12878
17 | 72937554 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878
18 | 2294404 | VAL | Yale |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
18 | 9391391 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
18 | 26986899 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
18 | 27257595 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
18 | 31087976 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240,NA12878
18 | 49240537 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
18 | 49742340 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
18 | 50720173 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
18 | 52857187 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA12878,NA19240
18 | 66589270 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878 | False positive 2p
19 | 1992869 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
19 | 41932168 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA19240,NA12878,NA12878,NA12878 | Fixed present
19 | 42723263 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
19 | 49069760 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
19 | 62117342 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA19240 | Possible paralog
20 | 28252238 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878 | False positive 2p
20 | 54466998 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA19240
21 | 18439182 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
22 | 17741460 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240,NA19240
22 | 22600437 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240 | False positive 2p
22 | 27369194 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA12878
22 | 28745470 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240,NA19240
22 | 30344243 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240
22 | 32760598 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12878,NA12878
22 | 34891228 | VAL | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
X | 28356419 | VAL | EMBL |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
X | 73527257 | INV | LSU-XTRA |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA19240
X | 88882601 | VAL | LSU-PRELIM-XP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878
X | 136784955 | VAL | LSU-PRELIM-IP |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA19240,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA19240,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA19240,NA19240,NA19240,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA19240,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA19240,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240 | False positive
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878 | False positive 2p
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878 | False positive 2p
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA19240,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878 | False positive 2p
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12878,NA19240,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA19240,NA12878,NA19240,NA19240,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA19240,NA19240,NA19240,NA19240,NA19240,NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878 | false positive
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878,NA19240,NA12878,NA19240,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878 | not an Alu? Small?
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240,NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | -9 | -9 | NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878 | False positive 2p
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA12878,NA12878,NA12878
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | 0 | 0 | NA19240