Spreadsheet: a9e3b556-7d31-46c0-8f32-dba110ddd0e8
Sheet: Sheet1

Name | Ancestor | Evolved | snp_in | Position | Change type | Gene_name | Effect | old_AA/new_AA | Old_codon/New_codon | Codon_Num(CDS) | CDS_size | Custom_interval_ID
[NAME] | T | C | evolved | 2820848 | SNP | GI:116050435 | NON_SYNONYMOUS_CODING | L/P | CTC/CCC | 292 | 1017
[NAME] | C | T | evolved | 6519 | SNP | NC_008463.1:gyrB | NON_SYNONYMOUS_CODING | P/S | CCT/TCT | 749 | 2418
scfm-A5Mod | * | -ACCGGTATGCGCG/-ACCGGTATGCGCG | evolved | 2620499 | DEL | GI:116050605 | FRAME_SHIFT |  |  | 74 | 705
scfm-A5Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
scfm-A5Mod | * | -G/-G | evolved | 2040295 | DEL | NC_008463.1:orfN | FRAME_SHIFT |  |  | 49 | 1014
scfm-A6Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
scfm-A6Mod | * | -G/-G | evolved | 2040295 | DEL | NC_008463.1:orfN | FRAME_SHIFT |  |  | 49 | 1014
scfm-B3Mod | C | T | evolved | 6166758 | SNP | GI:116053383 | SYNONYMOUS_CODING | P/P | CCG/CCA | 239 | 966
scfm-B4Mod | * | ࡠ苿� | evolved | 2820880 | INS | GI:116050435 | FRAME_SHIFT |  |  | 303 | 1017
scfm-B4Mod | C | A | evolved | 6520 | SNP | NC_008463.1:gyrB | NON_SYNONYMOUS_CODING | P/H | CCT/CAT | 749 | 2418
scfm-B5Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
scfm-B6Mod | C | T | evolved | 6519 | SNP | NC_008463.1:gyrB | NON_SYNONYMOUS_CODING | P/S | CCT/TCT | 749 | 2418
scfm-B6Mod | A | C | evolved | 5428144 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | T/P | ACC/CCC | 39 | 561
scfm-C2Mod | T | C | evolved | 2030199 | SNP | NC_008463.1:orfH | NON_SYNONYMOUS_CODING | L/P | CTG/CCG | 300 | 1266
scfm-C4Mod | A | C | evolved | 5428144 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | T/P | ACC/CCC | 39 | 561
scfm-C4Mod | * | -T/-T | evolved | 2040531 | DEL | NC_008463.1:orfN | FRAME_SHIFT |  |  | 128 | 1014
scfm-C5Mod | C | T | evolved | 5803 | SNP | NC_008463.1:gyrB | NON_SYNONYMOUS_CODING | T/I | ACC/ATC | 510 | 2418
scfm-C6Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
scfm-C6Mod | * | -G/-G | evolved | 2040295 | DEL | NC_008463.1:orfN | FRAME_SHIFT |  |  | 49 | 1014
scfm-D4Mod | C | T | evolved | 2494517 | SNP | GI:116054465 | NON_SYNONYMOUS_CODING | A/T | GCG/ACG | 1907 | 6294
scfm-D4Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
scfm-D4Mod | C | T | evolved | 989350 | SNP | NC_008463.1:ribD | NON_SYNONYMOUS_CODING | R/C | CGC/TGC | 306 | 1119
scfm-D5Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
scfm-D5Mod | * | -G/-G | evolved | 2040295 | DEL | NC_008463.1:orfN | FRAME_SHIFT |  |  | 49 | 1014
scfm-D6Mod | T | G | evolved | 5691706 | SNP | NC_008463.1:lpd3 | NON_SYNONYMOUS_CODING | T/P | ACC/CCC | 221 | 1401
scfm-D6Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
scfm-D6Mod | * | -G/-G | evolved | 2040295 | DEL | NC_008463.1:orfN | FRAME_SHIFT |  |  | 49 | 1014
sm-A1Mod | C | T | evolved | 5431759 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | H/Y | CAC/TAC | 975 | 4245
sm-A2Mod | T | A | evolved | 5432300 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | L/Q | CTG/CAG | 1155 | 4245
[NAME] | * | ᡠ뿸憂 | evolved | 5711 | INS | NC_008463.1:gyrB | CODON_INSERTION | -/G | -/GGC | 479 | 2418
[NAME] | G | A | evolved | 5428465 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | E/K | GAA/AAA | 146 | 561
[NAME] | * | -G/-G | evolved | 2040295 | DEL | NC_008463.1:orfN | FRAME_SHIFT |  |  | 49 | 1014
sm-A5Mod | T | C | evolved | 4261080 | SNP | GI:116049216 | SYNONYMOUS_CODING | R/R | CGT/CGC | 110 | 864
sm-A5Mod | * | ௿� | evolved | 4128159 | INS | GI:116049339 | FRAME_SHIFT |  |  | 312 | 963
sm-A5Mod | G | A | evolved | 3579215 | SNP | GI:116049836 | SYNONYMOUS_CODING | L/L | CTG/TTG | 88 | 321
sm-A5Mod | C | T | evolved | 3488054 | SNP | GI:116049913 | NON_SYNONYMOUS_CODING | V/I | GTC/ATC | 90 | 606
sm-A5Mod | * | ௿� | evolved | 3442002 | INS | GI:116049955 | FRAME_SHIFT |  |  | 29 | 1389
sm-A5Mod | C | T | evolved | 3110556 | SNP | GI:116050238 | SYNONYMOUS_CODING | D/D | GAC/GAT | 71 | 1356
sm-A5Mod | G | A | evolved | 3110583 | SNP | GI:116050238 | SYNONYMOUS_CODING | G/G | GGG/GGA | 80 | 1356
sm-A5Mod | C | T | evolved | 3110649 | SNP | GI:116050238 | SYNONYMOUS_CODING | A/A | GCC/GCT | 102 | 1356
sm-A5Mod | * | -C/-C | evolved | 2683108 | DEL | GI:116050552 | FRAME_SHIFT |  |  | 43 | 141
sm-A5Mod | C | T | evolved | 2515048 | SNP | GI:116050697 | NON_SYNONYMOUS_CODING | G/D | GGC/GAC | 209 | 861
sm-A5Mod | A | G | evolved | 1055294 | SNP | GI:116052027 | NON_SYNONYMOUS_CODING | L/P | CTG/CCG | 17 | 621
sm-A5Mod | * | ᯿� | evolved | 931603 | INS | GI:116052146 | FRAME_SHIFT |  |  | 1285 | 4251
sm-A5Mod | A | G | evolved | 821665 | SNP | GI:116052241 | NON_SYNONYMOUS_CODING | V/A | GTG/GCG | 376 | 1164
sm-A5Mod | G | A | evolved | 5298093 | SNP | GI:116052629 | NON_SYNONYMOUS_CODING | G/D | GGC/GAC | 326 | 2247
sm-A5Mod | T | C | evolved | 5552664 | SNP | GI:116052847 | SYNONYMOUS_CODING | D/D | GAT/GAC | 76 | 1560
sm-A5Mod | A | G | evolved | 413351 | SNP | GI:116054082 | NON_SYNONYMOUS_CODING | V/A | GTT/GCT | 77 | 1194
sm-A5Mod | * | ᯿� | evolved | 3193116 | INS | GI:161486759 | FRAME_SHIFT |  |  | 249 | 1422
sm-A5Mod | G | A | evolved | 4673608 | SNP | NC_008463.1:argD | NON_SYNONYMOUS_CODING | A/V | GCC/GTC | 25 | 1218
sm-A5Mod | G | A | evolved | 5939116 | SNP | NC_008463.1:gltB | SYNONYMOUS_CODING | T/T | ACC/ACT | 1476 | 4443
sm-A5Mod | A | G | evolved | 2015013 | SNP | NC_008463.1:gyrA | NON_SYNONYMOUS_CODING | D/G | GAC/GGC | 87 | 2763
sm-A5Mod | C | T | evolved | 6640 | SNP | NC_008463.1:gyrB | NON_SYNONYMOUS_CODING | P/L | CCG/CTG | 789 | 2418
sm-A5Mod | A | G | evolved | 820818 | SNP | NC_008463.1:mexG | NON_SYNONYMOUS_CODING | W/R | TGG/CGG | 53 | 444
sm-A5Mod | * | -CCGATCTGCTC/-CCGATCTGCTC | evolved | 1503203 | DEL | NC_008463.1:mutS | FRAME_SHIFT |  |  | 94 | 2565
sm-A5Mod | G | A | evolved | 5428465 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | E/K | GAA/AAA | 146 | 561
sm-A5Mod | C | T | evolved | 1443478 | SNP | NC_008463.1:plsB | NON_SYNONYMOUS_CODING | G/D | GGC/GAC | 753 | 2502
sm-A5Mod | T | C | evolved | 5008201 | SNP | NC_008463.1:sbcB | NON_SYNONYMOUS_CODING | T/A | ACC/GCC | 317 | 1440
sm-A5Mod | G | A | evolved | 1249509 | SNP | NC_008463.1:secF | NON_SYNONYMOUS_CODING | S/N | AGC/AAC | 31 | 918
sm-A5Mod | C | T | evolved | 3662508 | SNP |  | INTERGENIC
sm-A5Mod | T | C | evolved | 4721039 | SNP |  | INTERGENIC
sm-A5Mod | G | A | evolved | 5946583 | SNP |  | INTERGENIC
sm-A6Mod | G | C | evolved | 4100824 | SNP | GI:116049364 | NON_SYNONYMOUS_CODING | A/P | GCC/CCC | 271 | 1389
sm-A6Mod | * | -CCGAGGACTGGCAA/-CCGAGGACTGGCAA | evolved | 2036594 | DEL | GI:116051141 | FRAME_SHIFT |  |  | 77 | 1650
sm-A6Mod | T | C | evolved | 5428115 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | L/P | CTG/CCG | 29 | 561
sm-B1Mod | G | C | evolved | 5432321 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | R/P | CGC/CCC | 1162 | 4245
sm-B2Mod | G | A | evolved | 5432473 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | E/K | GAG/AAG | 1213 | 4245
sm-B3Mod | T | A | evolved | 5432300 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | L/Q | CTG/CAG | 1155 | 4245
sm-B4Mod | A | C | evolved | 5430523 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | T/P | ACC/CCC | 563 | 4245
sm-B4Mod | * | -ATCCAGGCCTG/-ATCCAGGCCTG | evolved | 5428224 | DEL | NC_008463.1:nfxB | FRAME_SHIFT |  |  | 65 | 561
sm-B5Mod | A | G | evolved | 3053028 | SNP | GI:116050285 | SYNONYMOUS_CODING | K/K | AAA/AAG | 31 | 1233
sm-B5Mod | A | G | evolved | 2015000 | SNP | NC_008463.1:gyrA | NON_SYNONYMOUS_CODING | T/A | ACC/GCC | 83 | 2763
sm-B5Mod | * | -CGATCTGCTCGC/-CGATCTGCTCGC | evolved | 1503204 | DEL | NC_008463.1:mutS | [NAME] | /- | [NAME] | 94 | 2565
sm-B5Mod | * | -G/-G | evolved | 5428338 | DEL | NC_008463.1:nfxB | FRAME_SHIFT |  |  | 103 | 561
sm-B6Mod | * | -GAAG/-GAAG | evolved | 2180643 | DEL | GI:116051026 | FRAME_SHIFT |  |  | 175 | 1383
sm-B6Mod | * | -ATAGCGGCGCTG/-ATAGCGGCGCTG | evolved | 5024353 | DEL | GI:116052366 | [NAME] | /- | ATAGCGGCGCTG/- | 192 | 1125
sm-B6Mod | * | -CTCCCA/-CTCCCA | evolved | 5668 | DEL | NC_008463.1:gyrB | [NAME] | /- | CTCCCA/- | 465 | 2418
sm-B6Mod | G | A | evolved | 5428567 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | G/S | GGC/AGC | 180 | 561
sm-B6Mod | * | ᠠ뿸悂 | evolved | 5601933 | INS | NC_008463.1:nusA | CODON_INSERTION | -/A | -/GCC | 485 | 1479
sm-C2Mod | A | G | evolved | 5431760 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | H/R | CAC/CGC | 975 | 4245
sm-C2Mod | A | G | evolved | 1927375 | SNP |  | INTERGENIC
sm-C3Mod | C | T | evolved | 5024315 | SNP | GI:116052366 | NON_SYNONYMOUS_CODING | M/I | ATG/ATA | 204 | 1125
sm-C4Mod | A | G | evolved | 2015013 | SNP | NC_008463.1:gyrA | NON_SYNONYMOUS_CODING | D/G | GAC/GGC | 87 | 2763
sm-C4Mod | G | A | evolved | 5428465 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | E/K | GAA/AAA | 146 | 561
sm-C5Mod | * | -AACAA/-AACAA | evolved | 678882 | DEL | GI:116054332 | FRAME_SHIFT |  |  | 38 | 1044
sm-C5Mod | A | C | evolved | 5428144 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | T/P | ACC/CCC | 39 | 561
sm-C6Mod | * | -CTCCCAGGA/-CTCCCAGGA | evolved | 5668 | DEL | NC_008463.1:gyrB | [NAME] | /- | CTCCCAGGA/- | 465 | 2418
sm-C6Mod | * | 俿� | evolved | 5428221 | INS | NC_008463.1:nfxB | FRAME_SHIFT |  |  | 64 | 561
[NAME] | G | A | evolved | 5432004 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | M/I | ATG/ATA | 1056 | 4245
[NAME] | G | A | evolved | 5432161 | SNP | NC_008463.1:morA | NON_SYNONYMOUS_CODING | A/T | GCC/ACC | 1109 | 4245
sm-D4Mod | A | C | evolved | 1250724 | SNP | GI:116051844 | NON_SYNONYMOUS_CODING | Q/P | CAG/CCG | 68 | 546
sm-D4Mod | G | A | evolved | 5428465 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | E/K | GAA/AAA | 146 | 561
sm-D4Mod | * | -CAA/-CAA | evolved | 1412893 | DEL | NC_008463.1:wspF | [NAME] | /- | CAA/- | 284 | 1005
sm-D5Mod | G | A | evolved | 2015012 | SNP | NC_008463.1:gyrA | NON_SYNONYMOUS_CODING | D/N | GAC/AAC | 87 | 2763
sm-D5Mod | G | A | evolved | 5428465 | SNP | NC_008463.1:nfxB | NON_SYNONYMOUS_CODING | E/K | GAA/AAA | 146 | 561
sm-D6Mod | * | -G/-G | evolved | 2820047 | DEL | GI:116050435 | FRAME_SHIFT |  |  | 25 | 1017
sm-D6Mod | * | ᠀뿸怂 | evolved | 5477 | INS | NC_008463.1:gyrB | CODON_INSERTION | -/D | -/GAC | 401 | 2418
sm-D6Mod | * | -CGTCTGGGTC/-CGTCTGGGTC | evolved | 1412125 | DEL | NC_008463.1:wspF | FRAME_SHIFT |  |  | 28 | 1005
NB: Putative mutators strains are highlighted in red