Spreadsheet: 0e3b59e9-2d0e-40d6-b8fa-67fd177c84ab
Sheet: ST14

Supplementary Table 14 ([NAME] et al.) Ancestral allele frequencies in modern populations
chr | start | homo_sapiens.end | TSS | SNPs | homo_sapiens.seq | gorilla_gorilla.seq | pan_troglodytes.seq | macaca_mulatta.seq | pongo_abelii.seq | mus_musculus.seq | ancestral allele | DENISOVA | NEANDERTHAL | Allele frequencies in populations from pilot1 1000 ge0mes project
 |  |  |  |  |  |  |  |  |  |  |  |  |  | YRI ancestral allele freq | CEU ancestral allele freq | CHB+JPT ancestral allele freq
2 | 115918205 | 115918205 | DPP10 | rs35809114:A/G | 'a' | 'g' | 'g' | 'g' | 'g' | 'g' | g | g | n | 0.907 | 0.767 | 1
3 | 239921 | 239921 | CHL1 | rs72619595:C/A | 'c' | 'a' | 'a' | 'a' | 'a' | 'a' | a | n | n | 0.5 | 0.542 | 0.933
3 | 2142536 | 2142536 | CNTN4 | rs9829996:C/G | 'g' | 'c' | 'c' | 'c' | 'c' | 'c' | c | c | n | 0.517 | 0.55 | 0.5
15 | 98196355 | 98196355 | LOC91948 | rs6496241:A/T | 'a' | 't' | 't' | 't' | 't' | 't' | t | n | t | 0.729 | 0.308 | 0.667
17 | 21476280 | 21476280 | C17orf51 | rs8070662:A/C | 'a' | 'c' | 'c' | n | n | n | c | c | n | 0.051 | 0 | 0
17 | 21477114 | 21477114 | C17orf51 | rs58407632:C/G | 'c' | 'g' | 'g' | n | n | n | g | g | n | 0.051 | 0 | 0
17 | 21477573 | 21477573 | C17orf51 | rs58772997:C/G | 'c' | 'g' | 'g' | n | n | n | g | g | n | 0.085 | 0 | 0
18 | 904164 | 904164 | ADCYAP1 | rs2689001:C/T | 'c' | 't' | 't' | 't' | 't' | 't' | t | n | t | 0.847 | 0.742 | 0.642
18 | 906326 | 906326 | ADCYAP1 | [NAME]:A/G | 'a' | 'g' | g' | 'g' | 'g' | 'g' | g | g | n | 0.093 | 0.267 | 0.575
18 | 907142 | 907142 | ADCYAP1 | rs2689002:A/G | 'a' | 'g' | 'g' | 'n' | 'g' | 'g' | g | g | n | 0.966 | 1 | 1
18 | 908828 | 908828 | ADCYAP1 | [NAME]:C/T | 't' | 'c' | 'c' | 'c' | 'c' | 'c' | c | c | c | 0.907 | 0.983 | 0.958
18 | 74800160 | 74800160 | MBP | rs1612497:A/C | 'a' | 'c' | 'c' | n | 'c' | n | c | c | n | 0.975 | 1 | 1
20 | 327016 | 327016 | NRSN2 | rs28372933:G/T | 'g' | 't' | 't' | 't' | n | 't' | t | t | n | 0.305 | 0 | 0
20 | 1784047 | 1784047 | SIRPA | rs6105738:T/C | 't' | 'a' | 'a' | 'a' | 'a' | n | a | n | n | 0 | 0 | 0
22 | 27043233 | 27043233 | MIAT | rs763271:C/G | 'c' | 'g' | 'g' | 'g' | 'n' | 'g' | g | g | g | 0.178 | 0.258 | 0.483
22 | 27043880 | 27043880 | MIAT | rs76773287:C/G | 'g' | 'c' | 'c' | 'c' | 'c' | 'c' | c | c | n | 0.042 | 0 | 0
22 | 27044523 | 27044523 | MIAT | rs66800358:G/- | 'g' | '-' | '-' | '-' | '-' | '-' | '-' | n | n | 0 | 0 | 0
22 | 27044523 | 27044523 | MIAT | rs4822759:G/T | 'g' | '-' | '-' | '-' | '-' | '-' | '-' | n | n | 0 | 0 | 0
 | Column name | What characterises | Description of contents | Comments
 | chr | Human specific alteration | Human [NAME]
 | start | Human specific alteration | Human [NAME] start position
 | homo_sapiens.seq | Human specific alteration | Human [NAME]
 | gorilla_gorilla.seq | Human specific alteration | Gorilla gorGor3 sequence | n - means that we can't make conclusion about corresponding sequence basing on alignment
 | pan_troglodytes.seq | Human specific alteration | Chimpanzee CHIMP2.1 sequence | n - means that we can't make conclusion about corresponding sequence basing on alignment
 | macaca_mulatta.seq | Human specific alteration | Macaque MMUL_1 sequence | n - means that we can't make conclusion about corresponding sequence basing on alignment
 | pongo_abelii.seq | Human specific alteration | Orangutan PPYG2 sequence | n - means that we can't make conclusion about corresponding sequence basing on alignment
 | mus_musculus.seq | Human specific alteration | Mouse NCBIM37 sequence | n - means that we can't make conclusion about corresponding sequence basing on alignment
 | DENISOVA |  | Corresponding sequence in Denisova genome | n - means that we can't make conclusion about corresponding sequence basing on alignment
 | NEANDERTHAL |  | Corresponding sequence in Neanderthal genome | n - means that we can't make conclusion about corresponding sequence basing on alignment
 | TSS | Selected region | Nearest transcript
 | SNPs | Human specific alteration | Human SNPs that overlap human specific alteration
 | YRI ancestral allele freq |  | pilot_1_YRI_low_coverage_panel
 | CEU ancestral allele freq |  | pilot_1_CEU_low_coverage_panel
 | CHB+JPT ancestral allele freq |  | pilot_1_CHB+JPT_low_coverage_panel