Spreadsheet: 473a4b22-ffb2-421c-b098-2c3279baaa43
Sheet: RpoN motifs

Table S7. TSS with a predicted FliA or RpoN motif - RpoN.
This table lists all TSS with a predicted RpoN motif. The columns "MEME" and "Regular expression" indicate by which method the motif was detected.
Strain | Locus | Position in strain | Strand | TSS type | MEME | Regular expression | Description | Sequence
81-176 | CJJ81176_0078 | 69745 | + | primary | Yes | Yes | hypothetical protein | TAAACTACAAAGCATCAAAACTTGGAACACTTCTTGCTTTAAAGACTTGTG
81-176 | CJJ81176_0267 | 231655 | - | secondary | Yes | Yes | hypothetical protein | CTGAATTTAATTTTTAAAAAACTTGGCACACCTTTTGCTTATAAAAAATCA
81-176 | CJJ81176_0448 | 392170 | + | primary | Yes | No | hypothetical protein | ACATTAATTTTTGCATAAAAAAGGAACACTTTTTGCTTGTATAGT
81-176 | CJJ81176_0553 | 487774 | - | primary | No | Yes | flagellar basal body rod protein FlgB | TATTTTTGTACAAAATAGTTAAATTGGAACAGTATTTGCTTGTTAATATTA
81-176 | CJJ81176_0572 | 507438 | + | secondary | No | Yes | flagellar protein FlaG | ATTGAGATTTATTTTAAAATTTTGGCACAGTTTTTGCTTATTATTTTTTTA
81-176 | CJJ81176_1045 | 964262 | - | secondary | Yes | No | putative lipoprotein | GATTTGTAATAAGTTTAAAGTTGGAACGCTTATTGCTTTTTATTT
81-176 | CJJ81176_1048 | 968179 | - | secondary | Yes | No | outer membrane liproprotein MapA | ATTGATGATAAATTTAAAACTTGGCTTGAAATTTGCTTGTATTTT
81-176 | CJJ81176_1093 | 1012173 | + | primary | Yes | No | flagellar assembly protein FliW | TAATTAAATAATTTAAAATTTTGGAATGATTATTGCTTATTTTAT
81-176 | CJJ81176_1257 | 1172053 | + | primary | Yes | No | hypothetical protein | AAGTTTAAAAAAGATATAAATTGGAATAGAAATTGCTTGTTTGTT
81-176 | CJJ81176_1338 | 1255052 | - | primary | No | Yes | flagellin | AAATTTTTAATCAAATTAAAACTTGGAACACTTCTTGCTTTAATCTTTTCG
81-176 | CJJ81176_1431 | 1351346 | - | internal | No | Yes | putative sugar transferase | ATGTCCAACTCTTCTAAAATTTATGGAACATATAGTGCTTTGGTTTTATTA
81-176 | CJJ81176_1455 | 1376542 | + | primary | No | Yes | flagellar basal body P-ring protein | CTTTTACGCTTCTTAACTTACTTGGAACACTTCTTGCTTGATCTATCATCA
81-176 | CJJ81176_1458 | 1378649 | + | internal | No | Yes | hypothetical protein | TAAATAAAATGTTTGATATCAATGATGGAACAAATAATGCTTATGGAGATA
81-176 | CJJ81176_1459 | 1378649 | + | primary | No | Yes | flagellar hook-associated protein FlgK | TAAATAAAATGTTTGATATCAATGATGGAACAAATAATGCTTATGGAGATA
81-176 | CJJ81176_1641 | 1550995 | + | primary | Yes | No | hypothetical protein | AATTCTAACTTATCCTAATTTAGGAACACTTTTTGCTTTTTAAAT
81116 | C8J_0043 | 68335 | + | primary | Yes | Yes | hypothetical protein | TAAACTACAAAGCATCAAAACTTGGAACACTTCTTGCTTTAAAGACTTGTG
81116 | C8J_0193 | 203749 | + | internal | Yes | No | oligopeptide transporter%2C OPT family | ACTTGCAAGTTGTGAGCAAAGAGGCACGCTTTTTGCTTCAGGGCT
81116 | C8J_0220 | 228850 | - | primary | Yes | Yes | hypothetical protein | GAATTTAATTTTTAAAAAACTTGGCACACCTTTTGCTTATAAAAAATAGCA
81116 | C8J_0403 | 399840 | + | primary | Yes | No | hypothetical protein | ACATTAATTTTTGCATAAAAAAGGAACACTTTTTGCTTGTATAGT
81116 | C8J_0489 | 495627 | - | primary | No | Yes | flagellar basal body rod protein FlgB | TATTTTTATACAAAATAGTTAAATTGGAACAGTATTTGCTTGTTAATATTA
81116 | C8J_0508 | 515290 | + | secondary | No | Yes | flagellar protein FlaG | ATTGAGATTTATTTTAAAATTTTGGCACAGTTTTTGCTTATTATTTTTTTA
81116 | C8J_0963 | 971798 | - | primary | Yes | No | putative lipoprotein | GATTTGCAATAAGTTTAAAGTTGGAACGCTTATTGCTTTTTATTT
81116 | C8J_0966 | 975716 | - | secondary | Yes | No | putative lipoprotein | ATTGATGATAAATTTAAAACTTGGCTTGAAATTTGCTTGTATTTT
81116 | C8J_1016 | 1026559 | + | primary | Yes | No | flagellar assembly protein FliW | TAATTAAATAATTTAAAATTTTGGAATGATTATTGCTTATTTTAT
81116 | C8J_1185 | 1191234 | + | primary | Yes | No | hypothetical protein | AAGTTTAAAAAAGATATAAATTGGAATAGAAATTGCTTGTTTATT
81116 | C8J_1255 | 1267474 | - | primary | No | Yes | flagellin | AAATTTTTAATCAAATTAAAACTTGGAACACTTCTTGCTTTAATCTTTTCG
81116 | C8J_1368 | 1384049 | + | primary | No | Yes | flagellar basal body P-ring protein | TTTTTACTCTTCTTAACTCACTTGGAACACTTTTTGCTTGATCTATCATCA
81116 | C8J_1371 | 1386158 | + | internal | No | Yes | hypothetical protein | TAAATAAAATGTTTAATATCAATGATGGAACAAATAATGCTTATGGAGATA
81116 | C8J_1372 | 1386158 | + | primary | No | Yes | flagellar hook-associated protein FlgK | TAAATAAAATGTTTAATATCAATGATGGAACAAATAATGCTTATGGAGATA
81116 | C8J_1552 | 1562524 | + | primary | Yes | No | hypothetical protein | AATTCTAACTTATCCTAATTTAGGAACACTTTTTGCTTTTTAAAT
NCTC11168 | Cj0040 | 59125 | + | primary | Yes | Yes | hypothetical protein | TAAACTACAAAGTATCAAAACTTGGAACACTTCTTGCTTTAAAAACTTATG
NCTC11168 | [NAME] | 201047 | + | internal | Yes | No | putative oligopeptide transporter%2C OPT family | ACTTGCAAGTTGTGAGCAAAGAGGCACGCTTTTTGCTTCAGGGCT
NCTC11168 | Cj0243c | 225984 | - | secondary | Yes | Yes | hypothetical protein | CTGAATTTAATTTTTAAAAAACTTGGCACACCTTTTGCTTATAAAAAATCA
NCTC11168 | Cj0528c | 490416 | - | primary | No | Yes | flagellar basal body rod protein FlgB | TATTTTTATACAAAATAGTTAAATTGGAACAGTATTTGCTTGTTAATATTA
NCTC11168 | Cj0547 | 510082 | + | secondary | No | Yes | flagellar protein FlaG | TTGAGATTTATTTTAAAATTTTGGCACAGTTTTTGCTTATTATTTTTTTTA
NCTC11168 | Cj0887c | 825930 | - | secondary | Yes | Yes | lagellar hook-associated protein FlgL | TAAAATTATATAATTTAAATTTTTGGAACAGTTATTGCTTTTGTTTATTAG
NCTC11168 | Cj1026c | 957593 | - | primary | Yes | No | putative lipoprotein | GATTTGCAATAAGTTTAAAGTTGGAACGCTTATTGCTTTTTATTT
NCTC11168 | Cj1029c | 961511 | - | secondary | Yes | No | putative liproprotein | ATTGATGATAAATTTAAAACTTGGCTTGAAATTTGCTTGTATTTT
NCTC11168 | Cj1075 | 1009588 | + | primary | Yes | No | flagellar assembly protein FliW | TAATTAAATAATTTAAAATTTTGGAATGATTATTGCTTATTTTAT
NCTC11168 | Cj1242 | 1170393 | + | primary | Yes | No | hypothetical protein | AAGTTTTACAAAGGTATAAATTGGAATAGAAATTGCTTGCTTATT
NCTC11168 | Cj1338c | 1269112 | - | primary | No | Yes | flagellin | AAATTTTTAATTAAACTAAAACTTGGAACACTTTTTGCTTTAATCTTTTCG
NCTC11168 | Cj1462 | 1398444 | + | primary | No | Yes | flagellar basal body P-ring protein | TTTTTACTCTTCTTAACTCACTTGGAACACTTTTTGCTTGATCTATCATCA
NCTC11168 | Cj1650 | 1574446 | + | primary | Yes | No | hypothetical protein | AATTCTAACTTATCCTAATTTAGGAACACTTTTTGCTTTTTAAAT
RM1221 | CJE0039 | 58116 | + | primary | Yes | Yes | hypothetical protein | TAAACTACAAAGTATCAAAACTTGGAACACTTCTTGCTTTAAAAACTTATG
RM1221 | CJE0197 | 199081 | + | internal | Yes | No | OPT family oligopeptide transporter | ACTTGCAAGTTGTGAGCAAAGAGGCACGCTTTTTGCTTCAGGGCT
RM1221 | CJE0293 | 261241 | - | secondary | Yes | Yes | hypothetical protein | TGAATTTAATTTTTAAAAAACTTGGCACACATTTTGCTTATAAAAAAATCA
RM1221 | CJE0569 | 513394 | - | primary | No | Yes | phage repressor protein%2C putative | GTTTCTAATTATGGAACATTATTTGCTTGAAAAAAGTGTATAATTTTTATA
RM1221 | CJE0570 | 513394 | - | antisense | No | Yes | hypothetical protein | GTTTCTAATTATGGAACATTATTTGCTTGAAAAAAGTGTATAATTTTTATA
RM1221 | CJE0632 | 568858 | - | primary | No | Yes | flagellar basal body rod protein FlgB | TATTTTTATACAAAACAGTTAAATTGGAACAGTATTTGCTTGTTAATATTA
RM1221 | CJE0651 | 588520 | + | secondary | No | Yes | flagellar protein FlaG | AATTGAGATTTATTTTAAAATTTTGGCACAGTTTTTGCTTATTATTTTTTA
RM1221 | CJE0966 | 904118 | - | secondary | Yes | Yes | lagellar hook-associated protein FlgL | TAAAATTATATAATTTAAATTTTTGGAACAGTTATTGCTTTTGTTTATTAG
RM1221 | CJE1170 | 1085853 | - | primary | Yes | No | putative lipoprotein | GATTTGTAATAAGTTTAAAGTTGGAACGCTTATTGCTTTTTATTT
RM1221 | CJE1173 | 1089771 | - | secondary | Yes | No | outer membrane liproprotein MapA | ATTGATGATAAATTTAAAACTTGGCTTGAAATTTGCTTGTATTTT
RM1221 | CJE1218 | 1135937 | + | primary | Yes | No | flagellar assembly protein FliW | TAATTAAATAATTTAAAATTTTGGAATGATTATTGCTTATTTTAT
RM1221 | CJE1378 | 1291172 | + | primary | Yes | No | hypothetical protein | AAGTTTTACAAAGGTATAAATTGGAATAGAAATTGCTTGCTTATT
RM1221 | CJE1440 | 1345730 | + | primary | Yes | No | signal peptidase I%2C putative | ATACAATTTTAATTTAAAACTTGGCATACTTATTGCTTAGTTAAA
RM1221 | CJE1526 | 1421835 | - | primary | No | Yes | flagellin | AGAATTTTTAATCAAACTAAACTTGGAACACTTCTTGCTTTAATCTTTTCG
RM1221 | CJE1527 | 1421835 | - | internal | No | Yes | hypothetical protein | AGAATTTTTAATCAAACTAAACTTGGAACACTTCTTGCTTTAATCTTTTCG
RM1221 | CJE1636 | 1537014 | + | primary | No | Yes | flagellar basal body P-ring protein | CTTTTACGCTTCTTAACTTACTTGGAACACTTCTTGCTTGATCTATCATCA
RM1221 | CJE1639 | 1539121 | + | internal | No | Yes | hypothetical protein | TAAATAAAATGTTTGATATCAATGATGGAACAAATAATGCTTATGGAGATA
RM1221 | CJE1640 | 1539121 | + | primary | No | Yes | flagellar hook-associated protein FlgK | TAAATAAAATGTTTGATATCAATGATGGAACAAATAATGCTTATGGAGATA
RM1221 | CJE1822 | 1715744 | + | primary | Yes | No | hypothetical protein | AATTCTAACTTATCCTAATTTAGGAACACTTTTTGCTTTTTAAAT