Spreadsheet: 066b7686-2973-445e-9ef3-279379afd155
Sheet: Table S7

Supplementary Table 7. List of primer sequences
(A) PCR primers for amplifying from genomic DNA
Gene | ID | Description | Sequence
IRF5 | IRF5-3UTR-LIC-F2 | Forward primer with LIC tag | TCTAATAACCACCCACGCAAGGCTGCAGACGGT
 | IRF5-3UTR-LIC-R2 | Reverse primer with LIC tag | ATTTCATACACATCCACGATTCTGTGGACGAGGCTGTG
EIF2A | EIF2A-3UTR-LIC-F | Forward primer with LIC tag | TCT AAT AAC CAC CCA CGA GAT TCA CGG AAA GCA AGT T
 | EIF2A-3UTR-LIC-R2 | Reverse primer with LIC tag | ATTTCATACACATCCACGAATTACTTCATAGAGTCTTGTG
DIP2B | DIP2B-3UTR-LIC-F | Forward primer with LIC tag | TCTAATAACCACCCACGCCAGCCTTGTGGGGACT
 | DIP2B-3UTR-LIC-R | Reverse primer with LIC tag | ATTTCATACACATCCACGTTAAACAGAATCAGGCATCA
NAB1 | NAB1-3UTR-LIC-F | Forward primer with LIC tag | TCTAATAACCACCCACGCTGTGATTTCTCTCACCG
 | NAB1-3UTR-LIC-R | Reverse primer with LIC tag | ATTTCATACACATCCACGAATACTGAAACCCAGCTTAAATAAGC
CPSF1 | CPSF1-3UTR-LIC-F | Forward primer with LIC tag | TCTAATAACCACCCACGCCCCGTGGATGCCGTCAC
 | CPSF1-3UTR-LIC-R | Reverse primer with LIC tag | ATTTCATACACATCCACGGCTAGAGGTGTAGACACCCC
WDR18 | WDR18-3UTR-LIC-F | Forward primer with LIC tag | TCTAATAACCACCCACGGGCCCGGAGACCCCGGC
 | WDR18-3UTR-LIC-R | Reverse primer with LIC tag | ATTTCATACACATCCACGTCCGGACAGAGGGTGCCGAGTG
(B) Site-directed mutagenesis primers
Gene | ID | Description | Sequence
IRF5 | IRF5-MutPAS1-S | Sense primer for mutating proximal PAS | TTTATGTATTTTTGGATTAATGAATGTTAAAAACAGACTCAGCTGTTTCTTTCC
 | IRF5-MutPAS1-AS | Antisense primer for mutating proximal PAS | GGAAAGAAACAGCTGAGTCTGTTTTTAACATTCATTAATCCAAAAATACATAA
 | IRF5-MutARE-S | Sense primer for mutating ARE | CATCCTGATATATTTAATATACCCATTATATTGTCCCCCGAGGTGGGG
 | IRF5-MutARE-AS | Antisense primer for mutating ARE | CCCCACCTCGGGGGACAATATAATGGGTATATTAAATATATCAGGATG
DIP2B | [NAME] | Sense primer for mutating proximal PAS | [NAME]
 | [NAME] | Antisense primer for mutating proxmial PAS | GGTTTGAATTGAGATGTGTTTAGTACACACTGAATTTCAAAGGC
 | DIP2B-MutMiR101-S | Sense primer for mutating binding site for miR-101 | CCCGTGTCAAATTCAAACTACAGTTGAGTGTAATTATGTATAAAG
 | [NAME] | Antisense primer for mutating binding site for miR-101 | CTTTATACATAATTACACTCAACTGTAGTTTGAATTTGACACGGG
NAB1 | [NAME] | Sense primer for mutating proximal PAS | GCCAAGGAAAATATTGTGGATTTAATATTTGATAAAACTGATTTTGTTTAACAGG
 | [NAME] | Antisense primer for mutating proxmial PAS | CCTGTTAAACAAAATCAGTTTTATCAAATATTAAATCCACAATATTTTCCTTGGC
 | NAB1-MutARE1-S | Sense primer for mutating ARE | GTTTAATTGACAGCTATATTCATTACCCATTTTACAATTTCATTTTTCTACACC
 | NAB1-MutARE1-AS | Antisense primer for mutating ARE | GGTGTAGAAAAATGAAATTGTAAAATGGGTAATGAATATAGCTGTCAATTAAAC
CPSF1 | CPSF1-MutPAS-S | Sense primer for mutating PAS | CCCCCTTTTTGTACAAAACACAAGGCCAAACATTTTTTGCTTGAG
 | CPSF1-MutPAS-AS | Antisense primer for mutating PAS | CTCAAGCAAAAAATGTTTGGCCTTGTGTTTTGTACAAAAAGGGGG
WDR18 | [NAME] | Sense primer for mutating PAS | GGTGCTAGTCTGTTTTTAACAACCGAGGATGAAAAGCCCC
 | [NAME] | Antisense primer for mutating PAS | GGGGCTTTTCATCCTCGGTTGTTAAAAACAGACTAGCACC
(C) Quantitative PCR primers
Gene | ID | Description | Sequence
EIF2A | EIF2A-SU-F | Forward primer for short transcript | GGAAAGCAAGTTGATGACCAG
 | EIF2A-SU-R | Reverse primer for short transcript | CATTAAGTGTGGGCACAGGA
 | EIF2A-LU-F | Forward primer for long transcript | GTGCCCACACTTAATGTCAAT
 | EIF2A-LU-R | Reverse primer for long transcript | ACACTTGTCTTTCAATCTGTCAAG
IRF5 | IRF5-F0* | Forward primer | CCCTTCTTGAGAGTCCAA
 | IRF5-R1* | Reverse primer for short transcript | TTTTTTTTTTTTTTTTTTCTGTT
 | IRF5-R2* | Reverse primer for long transcript | TAGTAGTAAAAGGAAAGAAACAG
DIP2B | DIP2B-SU-F2 | Forward primer for short transcript | AGAAGACCTCTGGCTACGA
 | DIP2B-SU-R2 | Reverse primer for short transcript | CCCACAGGATGAGATGAAGA
 | [NAME] | Forward primer for long transcript | ACTTGTCCAGAGGAAGAGACT
 | DIp2B-LU-R | Reverse primer for long transcript | CACTGTCCAGCCAGATGTTA
NAB1 | NAB1-SU-F | Forward primer for short transcript | ACAACAGCCACAAAAGAGAAA
 | NAB1-SU-R | Reverse primer for short transcript | ACCAAACAGGTCTCAACATCT
 | [NAME] | Forward primer for long transcript | TTCTCCCCGAGTCTCTTACA
 | [NAME] | Reverse primer for long transcript | CTTTATTGCCACAGGAAGCA
GAPDH | GAPDH-F | Forward primer | TCACCACCATGGAGAAGGC
 | GAPDH-R | Reverse primer | GCTAAGCAGTTGGTGGTGCA
Rluc | Rluc-F | Forward primer for [NAME] luciferase | AACTACAACGCCTACCTTCG
 | Rluc-R | Reverse primer for [NAME] luciferase | GAACTCGGTGTTAGGGAACT
* The primer sequences taken from [NAME], Proc. Nat. Ac. [NAME]. 2007, 104, 6758-6763.
(D) PCR Primers for generating DIG-labeled Northern probe
Gene | ID | Description | Sequence
hLuc | hLuc-SLIC-F | Forward primer for firefly luciferase probe | AATGATACGGCGACCACCGACTATGATTATGTCCGGCTACGTG
 | hLUC-SLIC-R | Reverse primer for firefly luciferase probe | CAAGCAGAAGACGGCATACGACACCTCGTCCACGAACACC