Spreadsheet: 726053b6-7e87-432a-8ada-1a14589f826d
Sheet: CarpeDB Database

Supplementary Table S1c.  CarpeDB Database gene list of all genes implicated in Epilepsy (accessed 2/16/11)
HUGO Gene | Description | Chromosome
ABAT | 4-aminobutyrate aminotransferase | 16
ABCB1 | ATP-binding cassette, sub-family B (MDR/TAP), member 1 | 7
ABCB10 | ATP-binding cassette, sub-family B (MDR/TAP), member 10 | 1
ABCC1 | ATP-binding cassette, sub-family C (CFTR/MRP), member 1 | 16
ADAM22 | A disintegrin and metalloproteinase domain 22 | 7
ADNP | neuroprotective factor | 20
ADSL | adenylosuccinate lyase | 22
AGTR2 | angiotensin II receptor, type 2 | X
ALDH5A1 | aldehyde dehydrogenase 5 family, member [NAME] (succinate-semialdehyde dehydrogenase) | 6
ALDH7A1 | Epilepsy, pyridoxine-dependent | 5
[NAME] | asparagine-linked glycosylation 6 homolog (yeast, alpha-1,3-glucosyltransferase) | 1
ALG9/FDXACB1 | asparagine-linked glycosylation 9 homolog | 11
APOE | apolipoprotein E | 19
AQP4 | aquaporin 4 | 18
ARHGEF9 | Cdc42 guanine nucleotide exchange factor (GEF) 9 | X
ARX | aristaless related homeobox | X
[NAME] | ATPase, Class V, type 10A | 15
ATP1A2 | ATPase, Na+/K+ transporting, alpha 2 (+) polypeptide | 1
ATP6AP2 | mental retardation, X-linked, with epilepsy | X
BDNF | brain-derived neurotrophic factor | 11
[NAME] | bromodomain containing 2 | 6
C14orf160 | chromosome 14 open reading frame 160 | 14
C6orf33 | chromosome 6 open reading frame 33 | 6
CABC1 | chaperone-ABC1 (activity of bc1 complex, S.pombe)-like | 1
CACNA1A | calcium channel, voltage-dependent, P/Q type, alpha 1A subunit | 19
CACNA1G | calcium channel, voltage-dependent, alpha 1G subunit | 17
CACNA1H | calcium channel, voltage-dependent, alpha 1H subunit | 16
CACNB4 | calcium channel, voltage-dependent, beta 4 subunit | 2
CACNG2 | calcium channel, voltage-dependent, gamma subunit 2 | 22
CACNG3 | calcium channel, voltage-dependent, gamma subunit 3 | 16
CASQ2 | calsequestrin 2 (cardiac muscle) | 1
CASR | calcium-sensing receptor | 3
CCM1 | cerebral cavernous malformations 1 | 7
CCM2 | cerebral cavernous malformation 2 | 7
CDK5 | cyclin-dependent kinase 5 | 7
[NAME] | cyclin-dependent kinase-like 5 | X
CHGA | parathyroid secretory protein 1 | 14
CHRNA2 | [NAME], nicotinic, alpha polypeptide 2 | 8
CHRNA4 | [NAME], nicotinic, alpha polypeptide 4 | 20
CHRNA6 | [NAME], nicotinic, alpha polypeptide 6 | 8
CHRNA7 | [NAME], nicotinic, alpha polypeptide 7 | 15
CHRNB2 | [NAME], nicotinic, beta polypeptide 2 | 1
CLCN2 | chloride channel 2 | 3
CLN2 | ceroid-lipofuscinosis, neuronal 2, late infantile ([NAME] disease) | 11
CLN3 | ceroid-lipofuscinosis, neuronal 3, juvenile (Batten, Spielmeyer-Vogt disease) | 16
CLN5 | ceroid-lipofuscinosis, neuronal 5 | 13
CLN6 | ceroid-lipofuscinosis, neuronal 6, late infantile, variant | 15
CLN8 | ceroid-lipofuscinosis, neuronal 8 (epilepsy, progressive with mental retardation) | 8
CNR1 | Cannabinoid receptor 1 | 6
CNTNAP2 | Autism, susceptibility to, 15 | 7
COL18A1 | collagen, type XVIII, alpha 1 | 21
CSEN | calsenilin, presenilin binding protein, EF hand transcription factor | 2
CSMD3 | CUB and Sushi multiple domains 3 | 8
CSNK1G2 | casein kinase 1, gamma 2 | 19
CSTB | cystatin B | 21
DAPK1 | death-associated protein kinase 1 | 9
DCX | doublecortex; lissencephaly, X-linked (doublecortin) | X
DGKD | [NAME], delta 130kDa | 2
DPAGT1 | dolichyl-phosphate N-acetylglucosaminephosphotransferase 1 | 11
DPYSL2 | dihydropyrimidinase-like 2 | 8
DRPLA | dentatorubral-pallidoluysian atrophy | 12
EFHC1 | EF-hand domain (C-terminal) containing 1 | 6
EIF2S1 | eukaryotic translation initiation factor 2, subunit 1 alpha | 14
ELP4 | elongation protein 4 homolog (S. cerevisiae) | 11
EMX2 | empty spiracles homolog 2 | 10
EN2 | Autism, susceptibility to, 10 | 7
ENFL2 | epilepsy, nocturnal frontal lobe, type 2 | 15
EPM2A | epilepsy, progressive myoclonus type 2A | 6
FCMTE1 | [NAME], benign adult familial | 8
FLNA | filamin A, alpha (actin binding protein 280) | X
FMR1 | fragile X mental retardation 1 | X
FMR2 | fragile X mental retardation 2 | X
FOSB | FBJ murine osteosarcoma viral oncogene homolog B | 19
GABBr1 | gamma-aminobutyric acid (GABA) B receptor 1 | 6
GABRA1 | gamma-aminobutyric acid (GABA) A receptor, alpha 1 | 5
GABRB3 | gamma-aminobutyric acid (GABA) A receptor, beta 3 | 15
GABRD | gamma-aminobutyric acid (GABA) A receptor, delta | 1
GABRG2 | gamma-aminobutyric acid (GABA) A receptor, gamma 2 | 5
GAD1 | glutamate decarboxylase 1 | 2
GAL | galanin | 11
GLUD1 | glutamate dehydrogenase 1 | 10
GPR54 | Hypogonadotropic hypogonadism | 19
GRIN1 | glutamate receptor, ionotropic, N-methyl D-aspartate 1 | 9
GRIN2A | glutamate receptor, ionotropic, N-methyl D-aspartate 2A | 16
GRM1 | glutamate receptor, metabotropic 1 | 6
HAX1 | HS1 binding protein | 1
HCN1 | hyperpolarization activated cyclic nucleotide-gated potassium channel 1 | 5
HCN2 | hyperpolarization activated cyclic nucleotide-gated potassium channel 2 | 19
HD | huntingtin (Huntington disease) | 4
HSPB2 | heat shock 27kDa protein 2 | 11
HTR2C | febrile convulsions 1 | 8
IDS | iduronate 2-sulfatase ([NAME] syndrome) | X
[NAME] | interferon, alpha 1 | 9
IL1B | interleukin 1, beta | 2
IL6 | interleukin 6 (interferon, beta 2) | 7
JRK | [NAME] homolog | 8
KCNA1 | potassium voltage-gated channel, shaker-related subfamily, member 1 (episodic ataxia) | 12
[NAME] | potassium voltage-gated channel, shaker-related subfamily, member 10 | 1
KCNA4 | potassium voltage-gated channel, shaker-related subfamily, member 4 | 11
KCNAB1 | potassium voltage-gated channel, shaker-related subfamily, beta member 1 | 2
KCNAB2 | potassium voltage-gated channel, shaker-related subfamily, beta member 2 | 1
[NAME] | potassium voltage-gated channel, subfamily H (eag-related), member 2 | 7
KCNJ10 | potassium inwardly-rectifying channel, subfamily J, member 10 | 1
KCNJ11 | potassium inwardly-rectifying channel, subfamily J, member 11 | 11
KCNN2 | potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 | 5
KCNQ1 | potassium voltage-gated channel, KQT-like subfamily, member 1 | 11
KCNQ2 | potassium voltage-gated channel, KQT-like subfamily, member 2 | 20
KCNQ3 | potassium voltage-gated channel, KQT-like subfamily, member 3 | 8
KCNV1 | potassium channel, subfamily V, member 1 | 8
L2HGDH | protein coding | 14
LGI1 | leucine-rich, glioma inactivated 1 | 10
LGI2 | leucine-rich repeat LGI family, member 2 | 4
LGI3 | leucine-rich repeat LGI family, member 3 | 8
LGI4 | leucine-rich repeat LGI family, member 4 | 19
MASS1 | monogenic, audiogenic seizure susceptibility 1 homolog | 5
MC3R | melanocortin 3 receptor | 20
ME2 | malic enzyme 2, NAD(+)-dependent, mitochondrial | 18
MED31 | febrile convulsions 3 | 2
MLLT3 | myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila); translocated to, 3 | 9
NDUFV1 | NADH dehydrogenase (ubiquinone) flavoprotein 1, 51kDa | 11
NEDD4 | neural precursor cell expressed, developmentally down-regulated 4 | 15
NEU1 | sialidase 1 (lysosomal sialidase) | 6
NF1 | neurofibromin 1 (neurofibromatosis, [NAME] disease, [NAME] disease) | 17
NHLRC1 | NHL repeat containing 1 | 6
NPY | neuropeptide Y | 7
NRXN1 | Autism, susceptibility to, 15 | 2
OPHN1 | oligophrenin 1 | X
OPRM1 | opioid receptor, mu 1 | 6
PAFAH1B1 | platelet-activating factor acetylhydrolase, isoform Ib, alpha subunit 45kDa | 17
PCDH19 | epilepsy, female restricted, with mental retardation (Juberg-Hellman syndrome) | X
PCMT1 | protein-L-isoaspartate (D-aspartate) O-methyltransferase | 6
PDYN | Beta-neoendorphin-dynorphin precursor | 20
[NAME] | PHD finger protein 6 | X
PHOX2A | paired-like (aristaless) homeobox 2a | 11
PLAT | plasminogen activator, tissue | 8
PLD1 | phospholipase D1, phophatidylcholine-specific | 3
POLG | polymerase (DNA directed), gamma | 15
PPT1 | palmitoyl-protein thioesterase 1 (ceroid-lipofuscinosis, neuronal 1, infantile) | 1
PRICKLE1 | Epilepsy, progressive myoclonic 1B | 12
PRKCG | protein kinase C, gamma | 19
PRNP | prion protein (p27-30) (CJD, GSS syndrome, fatal familial insomnia) | 20
[NAME] | Proline dehydrogenase (proline oxidase ) | 22
PSEN1 | [NAME] 1 (Alzheimer disease 3) | 14
PTGS2 | prostaglandin-endoperoxide synthase 2 | 1
[NAME] | quinolinate phosphoribosyltransferase | 16
RELN | reelin | 7
S100B | S100 calcium binding protein, beta | 21
SCA10 | [NAME] 10 | 22
SCA2 | spinocerebellar ataxia 2 | 12
SCARB2 | Scavenger receptor class B member 2 | IV
SCN1A | sodium channel, voltage-gated, type I, alpha | 2
SCN1B | sodium channel, voltage-gated, type I, beta | 19
SCN2A1 | sodium channel, voltage-gated, type II, alpha 1 | 2
SCN5A | sodium channel, voltage-gated, type V, alpha (long QT syndrome 3) | 3
SEZ6 | seizure related 6 homolog | 17
SGCE | sarcoglycan, epsilon | 7
SLC12A6 | solute carrier family 12 (potassium/chloride transporters), member 6 | 15
SLC1A1 | solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter), member 1 | 9
SLC1A3 | solute carrier family 1 (glial high affinity glutamate transporter), member 3 | 5
SLC25A22 | solute carrier family 25 (mitochondrial carrier: glutamate), member 22 | 11
SLC2A1 | solute carrier family 2 (facilitated glucose transporter), member 1 | 1
SLC4A3 | solute carrier family 4, anion exchanger, member 3 | 2
SLC5A11 | sodium/myo-inositol cotransporter 2 | 16
SLC6A12 | solute carrier family 6 (neurotransmitter transporter, betaine/GABA), member 12 | 12
SLC6A8 | solute carrier family 6 (neurotransmitter transporter, creatine), member 8 | X
SLC9A6 | Solute carrier family 9 (sodium/hydrogen exchanger), member 6 | X
SMS | spermine synthase | X
STXBP1 | syntaxin binding protein 1 | 9
SURF1 | surfeit 1 | 9
SYN1 | synapsin I | X
SYN2 | protein coding | 3
SYT10 | synaptotagmin X | 12
TBP | TATA box binding protein | 6
TCF4 | transcription factor 4 | 18
TMEM1 | [NAME] 1 | 21
[NAME] | ransient receptor potential cation channel, subfamily V, member 1 | 17
[NAME] | tuberous sclerosis 1 | 9
TSC2 | tuberous sclerosis 2 | 16
TUBA1A | tubulin, alpha 1a | 12
U2AF1 | U2(RNU2) small nuclear RNA auxillary factor 1 | 21
UBE3A | ubiquitin protein ligase E3A (HPV E6-associated protein, Angelman syndrome) | 15
UCP2 | uncoupling protein 2, mitochondrial | 11
WNT8B | wingless-type MMTV integration site family, member 8B | 10
ZFHX1B | zinc finger homeobox 1b | 2
ZNF354A | zinc finger protein 354A | 5