Spreadsheet: 4501f130-3eb4-4c6e-a6f2-56fb1c781d30
Sheet: Comparison of target sites

The first two columns, "sRNA name" and "Target gene", indicate the name of sRNA and the name of target gene of the sRNA.
The next 4 columns indicate gene ID of the target gene, strand, distance of target sites to ATG, and the sequence of target site in E. coli.
The next 4 columns indicate gene ID of the target gene, strand, distance of target sites to ATG, and the sequence of target site in K. pneumoniae.
The last column, "Target sequence identity", indicates the sequence of identity of target sites of sRNA to the target gene.
 |  |  |  | E. coli |  |  |  | K. pneumoniae
sRNA name | Target gene | Gene ID | Strand | Distance to ATG | Target site sequence | Gene ID | Strand | Distance to ATG | Target site sequence | Target sequence identity
sgrS | ptsG | b1101 | + | -27 ~ 4 | CACCCATACTCAGGAGCACTCTCAATTATGTT | KPN_01099 | + | -27 ~ 4 | ACCAAATACTCAGGAGCACTCTCAATTATGTT | 0.875
sgrS | manX | b1817 | + | 24 ~ 37 | ACACATGGTTGGGC | KPN_02333 | + | 24 ~ 37 | ACACATGGTTGGGC | 1
arcZ | rpoS | [NAME] | - | -119 ~ -96 | GAAATTCGTTACAAGGGGAAATCC | [NAME] | - | -214 ~ -191 | GAAATTCGTTACAAGGGGAAATCC | 1
cyaR | ompX | b0814 | + | -8 ~ 2 | AGGTGGTTATG | [NAME] | + | -8 ~ 2 | AGGTGGTTATG | 1
cyaR | nadE | b1740 | + | -10 ~ 3 | GAGGGGTTCAATGA | KPN_01228 | - | -10 ~ 3 | GGAGGGCGCGATGA | 0.642857142857143
cyaR | yqaE | b2666 | - | -3 ~ 16 | CATATGGGTTTCTGGAGAAT | KPN_01503 | + | -3 ~ 16 | GTTATGGGATTCTGGAGAAT | 0.85
cyaR | luxS | b2687 | - | -11 ~ 3 | GAGGTGGCTAAATGC | [NAME] | - | -10 ~ 3 | GAGGTGACGAATGC | 0.8
dsrA | rpoS | [NAME] | - | -118 ~ -96 | AAATTCGTTACAAGGGGAAATCC | [NAME] | - | -213 ~ -191 | AAATTCGTTACAAGGGGAAATCC | 1
fnrS | gpmA | b0755 | - | -12 ~ 4 | AGGAGTAAGTATATGGC | [NAME] | - | -12 ~ 4 | AGGAGTGAGAGAATGGC | 0.764705882352941
fnrS | maeA | b1479 | - | -20 ~ 10 | TTCAAAAAAGAGTGAGTGACATGGAACCAAA | KPN_01847 | + | -22 ~ 10 | TCATGATCAAGGAGTTAGTGCGATGCAATTTAC | 0.545454545454545
fnrS | sodB | b1656 | + | -37 ~ 20 | TTGTACGTATGCAAATTAATAATAAAGGAGAGTAGCAATGTCATTCGAATTACCTGCA | KPN_01994 | + | -36 ~ 20 | TGTGAGATAAAACAAAAAGTTATAAGGAGAGTAGCAATGTCGTTTGAATTACCTGCA | 0.724137931034483
fnrS | folE | b2153 | - | -26 ~ -14 | CGTCACACCTGCA | KPN_02591 | - | -25 ~ -13 | CGCCACACCTGCA | 0.923076923076923
fnrS | yobA | b1841 | - | -17 ~ 18 | AAAAAGGAATAGATAATATGGCTTCAACTGCACGCT | KPN_02358 | - | -8 ~ 30 | AAAAGGGAATGACGAATATGCGACTTCTTGCTGGACGCG | 0.666666666666667
fnrS | folX | b2303 | + | -24 ~ -2 | AAGTAAAACAACGGAGAACCTGC | KPN_02693 | + | -26 ~ -2 | GACTTACACCACGGAGGAAGCCTGC | 0.68
fnrS | metE | b3829 | + | -17 ~ 13 | AATTAGAGGAAGAAAAAATGACAATATTGAA | [NAME] | + | -18 ~ 13 | AATAAGAGAGGAACAAAAATGACAATTATTAA | 0.71875
fnrS | sodA | b3908 | + | -18 ~ 16 | ACAATACTGGAGATGAATATGAGCTATACCCTGCC | KPN_04217 | + | -6 ~ 28 | ACAATAATGGAGATGATTATGAGCTATACCCTGCC | 0.942857142857143
gcvB | oppA | b1243 | + | -18 ~ 21 | GAGGGAGTCCAAAAAACAATGACCAACATCACCAAGAGAA | KPN_02197 | - | -18 ~ 21 | GACTGGAGTTACAACACAATGACCATCATCACTAAAAAGC | 0.625
gcvB | sstT | b3089 | + | -23 ~ -13 | CAACACAATGA | KPN_03517 | + | -24 ~ -13 | CTACATCACTGG | 0.666666666666667
gcvB | dppA | b3544 | - | -41 ~ -8 | CAAAGGGTTAAAACAACAAACATCACAATTGGAG | KPN_03899 | - | -70 ~ -35 | CGGCGGATATATGCAAACAACATCACAATTTTGGAG | 0.666666666666667
gcvB | cycA | b4208 | + | -25 ~ 7 | CAGACAGGTACAGGAAGAAAAAAACATGGTAGA | KPN_04601 | + | -27 ~ 7 | CAGACAGGTACAACAGGAAGAAATCACATGGTAGA | 0.828571428571429
glmZ | glmS | b3729 | - | -39 ~ -21 | CAGGTTGACCGACAACGAT | KPN_04134 | - | -49 ~ -26 | CAGGTCAGCGACAACGCATGGCAT | 0.6
micA | ompX | b0814 | + | 1 ~ 23 | TGAAAAAAATTGCATGTCTTTCA | [NAME] | + | 1 ~ 23 | TGAATAAAATTGCACGTCTTTCA | 0.91304347826087
micA | ompA | b0957 | - | -20 ~ -5 | ATGATAACGAGGCGCA | KPN_00986 | - | -20 ~ -5 | ATGATAATGAGGCGCA | 0.9375
micA | phoP | b1130 | - | -14 ~ 8 | AGGGAGAAATAAAAATGCGCGTA | KPN_01136 | - | -13 ~ 8 | AGGGAGAACAGCCATGCGCGTA | 0.782608695652174
micC | ompC | b2215 | - | -40 ~ -14 | TAAAAAAGCAAATAAAGGCATATAACA | KPN_02636 | - | -36 ~ -14 | TAATAAAAGGCATATAACAAACA | 0.592592592592593
micM | chiP | b0681 | + | -18 ~ -7 | GTCAAAGAGGAT | KPN_00703 | + | -18 ~ -7 | GTCAAAGAGGAT | 1
omrA | cirA | b2155 | - | -34 ~ -9 | TTTTATTTTCGTAGTTACCTCATGGA | KPN_02593 | - | -90 ~ -63 | TTGTTTGTTTGGTTGTACACCTCATGGA | 0.75
omrB | cirA | b2155 | - | -34 ~ -9 | TTTTATTTTCGTAGTTACCTCATGGA | KPN_02593 | - | -90 ~ -63 | TTGTTTGTTTGGTTGTACACCTCATGGA | 0.75
rprA | rpoS | [NAME] | - | -116 ~ -93 | ATTCGTTACAAGGGGAAATCCGTA | [NAME] | - | -211 ~ -188 | ATTCGTTACAAGGGGAAATCCGTC | 0.958333333333333
rybB | ompW | b1256 | + | -12 ~ 20 | GACGGAGCGGATATGAAAAAGTTAACAGTGGCG | [NAME] | + | 24 ~ 56 | GAGGAAGTGGATATGAAGAAGTTAGCAGCGGCG | 0.818181818181818
rybB | ompC | b2215 | - | -32 ~ 0 | CAAATAAAGGCATATAACAGAGGGTTAATAACA | KPN_02636 | - | -28 ~ 0 | GGCATATAACAAACAGAGGGTTAATAACA | 0.727272727272727
ryhB | sdhC | b0721 | + | 342 ~ 381 | GTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCG | KPN_00728 | + | 228 ~ 267 | GTTATTACTGTCGTGCTTTCACTTCTCGCAGGAGTCCTCG | 1
ryhB | sodB | b1656 | + | -12 ~ 5 | AGGAGAGTAGCAATGTCA | KPN_01994 | + | -11 ~ 5 | GGAGAGTAGCAATGTCG | 0.888888888888889
ryhB | iscS | b2530 | - | -25 ~ 0 | AGTGATGTACGGAGTTTATAGAGCAA | KPN_02862 | - | -24 ~ 0 | AGTGATGTACGGAGTTTAAGAGCAA | 0.961538461538462
ryhB | cysE | b3607 | - | -3 ~ 9 | GCAATGTCGTGTG | KPN_03951 | - | -3 ~ 9 | GCAATGCCGTGTG | 0.923076923076923