Spreadsheet: e539ec47-611d-4303-833a-09c257a8e92e
Sheet: Sheet1

An up to date version of this list is maintained on Cogepedia (http://synteny.cnr.berkeley.edu/wiki/index.php/Classical_Maize_Genes). If you discover any errors or omissions in this list contact [NAME] ([EMAIL]) | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17 | Unnamed: 18 | Unnamed: 19 | Unnamed: 20 | Unnamed: 21 | Unnamed: 22 | Unnamed: 23 | Unnamed: 24
Symbol | Citation | [NAME] | Identified by Phenotype | MaizeGDB Link | GenBank ID | Chromosome | Strand | B73 refgen2 Gene | Subgenome | Comments | Proofing Link | Local duplicates | Homeolog | Sorghum Ortholog | Setaria Ortholog | [NAME] | [NAME] | Pan-grass panel Link | [NAME] by MaizeSequence.org | UC-Berkeley vs. Maizesequence.org | Link to compare genes where our assignments differed | Analysis of disagreements between maizesequence.org and UC-Berkeley
wx1 | 176 | waxy1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12768 | X03935 | chr9 | -1 | GRMZM2G024993 | 1 | Good | http://genomevolution.org/r/25fq |  | too big a gap | Sb10g002140 | PAC:18197948 | Os06g04200 | Bradi1g50090 | http://genomevolution.org/r/25fr | GRMZM2G024993 | Identical Assignment
adh1 | 173 | alcohol [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12021 | X00580 | chr1 | -1 | GRMZM2G442658 | 1 | Good | http://genomevolution.org/r/25yz |  | chr5:7934557-8053554 | Sb01g008730 | chr1:5664436-6129105 | chr3:30154185-30678637 | chr1:6207197-6768216 | http://genomevolution.org/r/26iy | GRMZM2G442658 | Identical Assignment
o2 | 152 | opaque endosperm2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12495 | X15544 | chr7 | 1 | GRMZM2G015534 | 1 | Good | http://genomevolution.org/r/25ek |  | chr2:233375937-233479855 | Sb02g004590 | PAC:18183040 | Os07g08420 | Bradi1g55450 | http://genomevolution.org/r/26fa | GRMZM2G015534 | Identical Assignment
p1 | 127 | pericarp color1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12517 | U57002 | chr1 | -1 | GRMZM2G084799 | 1 | 3' UTR missing | http://genomevolution.org/r/25l8 |  | GRMZM2G022686 | Sb01g037670 | PAC:18191887 | Os03g19120 | Bradi1g64690 | http://genomevolution.org/r/25l9 | No Gene Identified by Maizesequence.org
bz1 | 122 | bronze1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12098 | [NAME] | chr9 | -1 | GRMZM2G165390 | 1 | Good | http://genomevolution.org/r/25u7 |  | chr6:107102688-107370412 | Sb10g006140 | PAC:18199108 | Os06g09240 | Bradi1g46850 | http://genomevolution.org/r/25u8 | GRMZM2G165390 | Identical Assignment
[NAME] | 122 | shrunken1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12634 | X02400 | chr9 | 1 | GRMZM2G089713 | 1 | Extra 5' UTR in maizesequence.org | [NAME] | [NAME] | chr6:107334200-107521484 | Sb10g006330 | PAC:18198292 | Os06g09450 | Bradi1g46670 | http://genomevolution.org/r/26gn | No Gene Identified by Maizesequence.org
a1 | 112 | anthocyaninless1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12000 | X05068 | chr3 | -1 | GRMZM2G026930 | 1 | Good | http://genomevolution.org/r/25g6 |  | GRMZM2G013726 | Sb03g028890 | PAC:18178383 | Os01g44260 | Bradi2g44480 | http://genomevolution.org/r/25g7 | GRMZM2G472869 | Different Assignment | http://genomevolution.org/r/26jl | Two independent GenBank records for a1 hit the gene we identified. Noncoding sequence upstream of the annotated CDS in one genbank record also hits maizesequence.org gene model. Our gene is located on the correct chromosome per maizegdb locus page | maizesequence.org gene is not.
sh2 | 112 | shrunken2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12635 | [NAME] | chr3 | -1 | GRMZM2G429899 | 1 | extra (coding)exons in maizesequence.org | http://genomevolution.org/r/25yt |  | chr8:146010807-146161590 | Sb03g028850 | PAC:18179768 | Os01g44220 | chr2:44334929-45001469 | http://genomevolution.org/r/26ix | GRMZM2G429899 | Identical Assignment
c1 | 106 | colored aleurone1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12101 | X52201 | chr9 | -1 | GRMZM2G005066 | 1 | Missing 3' UTR in maizesequence.org | http://genomevolution.org/r/25da |  | GRMZM2G701063 | Sb10g006700 | PAC:18198924 | Os06g10350 | chr1:44862834-45114808 | http://genomevolution.org/r/26f5 | No Gene Identified by Maizesequence.org
r1 | 101 | colored1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12621 | X15806 | chr10 | 1 | GRMZM5G822829 | 2 | Good||lc1 | http://genomevolution.org/r/2614 |  | GRMZM2G172795 | Sb06g025060 | PAC:18202973 | Os04g47059 | chr5:20758637-21209681 | http://genomevolution.org/r/26j2 | No Gene Identified by Maizesequence.org
kn1 | 100 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12352 | X61308 | chr1 | -1 | GRMZM2G017087 | 1 | Missing 5' UTR | http://genomevolution.org/r/25ey |  | chr5:9139999-9295991 | [NAME] | PAC:18190710 | Os03g51690 | Bradi1g10050 | http://genomevolution.org/r/26fe | GRMZM2G017087 | Identical Assignment
su1 | 83 | sugary1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12664 | U18908 | chr4 | 1 | GRMZM2G138060 | 2 | Missing 5' coding region? | http://genomevolution.org/r/25ra |  | chr1:190092103-190239690 | Sb07g027200 | PAC:18187070 | Os08g40930 | Bradi3g40410 | http://genomevolution.org/r/25rb | No Gene Identified by Maizesequence.org
b1 | 78 | colored plant1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12065 | X57276 | chr2 | 1 | GRMZM2G172795 | 1 | Missing internal exon (gene model and pseudomolecule) | http://genomevolution.org/r/25v7 |  | GRMZM5G822829 | Sb06g025060 | PAC:18202973 | Os04g47059 | chr5:20877277-21224959 | http://genomevolution.org/r/26i8 | No Gene Identified by Maizesequence.org
[NAME] | 72 | bronze2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12099 | U14599 | chr1 | -1 | GRMZM2G016241 | 1 | Good | http://genomevolution.org/r/25eq |  | chr5:33995109-34132444 | Sb01g022080 | PAC:18193433 | chr10:13445230-14195619 | chr3:26596665-27487768 | http://genomevolution.org/r/26fc | GRMZM2G016241 | Identical Assignment
c2 | 69 | colorless2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12102 | X60205 | chr4 | 1 | GRMZM2G422750 | 1 | Good | http://genomevolution.org/r/25yp |  | GRMZM5G818346 | Sb05g020150 | PAC:18202072 | Os11g32650 | no synteny | http://genomevolution.org/r/25yq | GRMZM2G422750 | Identical Assignment
pl1 | 65 | purple plant1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12553 | AF015268 | chr6 | 1 | GRMZM2G701063 | 2 | Good | http://genomevolution.org/r/25zn |  | GRMZM2G005066 | Sb10g006700 | PAC:18198924 | Os06g10350 | chr1:44356779-45000135 | http://genomevolution.org/r/26j1 | No Gene Identified by Maizesequence.org
[NAME] | 62 | viviparous1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12731 | M60214 | chr3 | 1 | GRMZM2G133398 | 1 | Good | http://genomevolution.org/r/25qy |  | chr8:162794487-162905105 | Sb03g043480 | PAC:18176590 | Os01g68370 | Bradi2g58390 | http://genomevolution.org/r/26hh | GRMZM2G133398 | Identical Assignment
adh2 | 57 | alcohol [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12022 | [NAME] | chr4 | -1 | GRMZM2G098346 | 1 | Good | http://genomevolution.org/r/25nc |  | too big a gap | Sb05g009360 | PAC:18200336 | Os11g10480 | Bradi4g22610 | http://genomevolution.org/r/26gv | GRMZM2G098346 | Identical Assignment
ae1 | 55 | amylose extender1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12028 | L08065 | chr5 |  | GRMZM2G032628 | 1 | Good | http://genomevolution.org/r/25gk |  | GRMZM2G073054 | Sb04g021540 | PAC:18174084 | Os02g32660 | Bradi3g44760 | http://genomevolution.org/r/25gl | GRMZM2G039942 | Different Assignment | http://genomevolution.org/r/26jn | Two independent GenBank records for ae1 hit the gene we identified. 3' non-coding sequence from one GenBank record hits near but not on the maizesequence.org. The location of our gene agrees with the genetic location of ae1 on its maizegdb locus page | maizesequence.org gene does not.
bt2 | 49 | brittle [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12092 | AF544167 | chr4 | -1 | GRMZM2G068506 | 2 | Good|potentially missing upstream exons | http://genomevolution.org/r/25jm |  | no synteny | too big a gap | no synteny | no synteny | no synteny | http://genomevolution.org/r/25jn | No Gene Identified by Maizesequence.org
fl2 | 44 | floury2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12225 | L34340 | chr4 | -1 | GRMZM2G397687 | 1 | Good | http://genomevolution.org/r/25y3 | GRMZM2G397678 | no synteny | too big a gap | too big a gap | too big a gap | too big a gap | http://genomevolution.org/r/25y4 | No Gene Identified by Maizesequence.org
sus1 | 44 | sucrose [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41166 | L33244 | chr9 | -1 | GRMZM2G152908 | 2 | Good | http://genomevolution.org/r/25sp |  | chr1:69537905-69750049 | Sb01g033060 | PAC:18195129 | Os03g28330 | Bradi1g60320 | http://genomevolution.org/r/25sq | GRMZM2G152908 | Identical Assignment
bt1 | 43 | brittle endosperm1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12091 | M79333 | chr5 | -1 | GRMZM2G144081 | 1 | Good | http://genomevolution.org/r/25rv |  | chr4:231949546-232075734 | Sb04g007010 | no synteny | no synteny | no synteny | http://genomevolution.org/r/25rw | No Gene Identified by Maizesequence.org
pep1 | 42 | phosphoenolpyruvate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12531 | X15238 | chr9 | 1 | GRMZM2G083841 | 1 | Good | http://genomevolution.org/r/25l4 |  | chr6:105702922-105892894 | Sb10g021330 | PAC:18197862 | chr6:19969223-20504683 | no synteny | http://genomevolution.org/r/26gf | No Gene Identified by Maizesequence.org
vp5 | 42 | viviparous5 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12733 | AF039585 | chr1 | 1 | GRMZM2G410515 | 1 | Can't proof | http://genomevolution.org/r/25yh |  | chr9:149941484-150053631 | Sb01g044990 | PAC:18194286 | Os03g08570 | Bradi1g72400 | http://genomevolution.org/r/26iu | No Gene Identified by Maizesequence.org
an1 | 40 | anther ear1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12048 | L37750 | chr1 | 1 | GRMZM2G081554 | 1 | Good | http://genomevolution.org/r/25kq |  | chr5:33845722-34017985 | Sb01g021990 | PAC:18194042 | chr10:13517249-14258420 | too big a gap | http://genomevolution.org/r/26ga | No Gene Identified by Maizesequence.org
cat1 | 38 | catalase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12108 | X60135 | chr5 | 1 | GRMZM2G088212 | 1 | Good | http://genomevolution.org/r/25m4 |  | AC187409.4_FG008 | Sb10g030840 | PAC:18197582 | Os06g51150 | Bradi1g29800 | http://genomevolution.org/r/25m5 | No Gene Identified by Maizesequence.org
cat3 | 37 | catalase3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12110 | L05934 | chr4 | 1 | GRMZM2G079348 | 2 | Good | http://genomevolution.org/r/25ki |  | chr5:69273834-69377324 | Sb04g001130 | PAC:18174069 | Os02g02400 | Bradi3g01470 | http://genomevolution.org/r/25kj | No Gene Identified by Maizesequence.org
glu1 | 37 | beta glucosidase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12268 | U33816 | chr10 | 1 | GRMZM2G016890 | 1 | Good | http://genomevolution.org/r/25eu | GRMZM2G014844||GRMZM2G119460 | GRMZM2G120962 | Sb08g007586 | no synteny | no synteny | no synteny | http://genomevolution.org/r/25ev | GRMZM2G016890 | Identical Assignment
tb1 | 37 | teosinte branched1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12671 | U94494 | chr1 | 1 | AC233950.1_FG002 | 1 | Good | http://genomevolution.org/r/25ce |  | GRMZM2G324986 | Sb01g010690 | PAC:18193228 | Os03g49880 | Bradi1g11060 | http://genomevolution.org/r/26f1 | AC233950.1_FG002 | Identical Assignment
gl1 | 36 | glossy1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12242 | [NAME] | chr7 | 1 | GRMZM2G114642 | 1 | Good | http://genomevolution.org/r/25p8 |  | chr2:182572565-182683590 | Sb02g025220 | PAC:18181405 | Os09g25850 | Bradi4g30750 | http://genomevolution.org/r/25p9 | GRMZM2G114642 | Identical Assignment
bm3 | 34 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12081 | M73235 | chr4 | -1 | AC196475.3_FG004 | 2 | Good | http://genomevolution.org/r/25bq |  | chr10:78080658-78371921 | Sb07g003860 | PAC:18186460 | Os08g06100 | Bradi3g16530 | http://genomevolution.org/r/262i | No Gene Identified by Maizesequence.org
[NAME] | 34 | resistance to Puccinia sorghi1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12609 | AF107293 | chr10 | -1 | AC152495.1_FG002 | 1 | 5' and 3' UTR exons missed by maizesequence.org | [NAME] | AC152495.1_FG003||GRMZM2G003625||GRMZM2G005134||GRMZM2G061742||GRMZM2G069382||GRMZM2G083246||GRMZM2G083258||GRMZM2G165720||GRMZM5G833046 | chr3:231943289-232094903 | Sb08g002410 | no synteny | no synteny | no synteny | http://genomevolution.org/r/262f | No Gene Identified by Maizesequence.org
rs1 | 34 | rough [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12616 | L44133 | chr7 | 1 | GRMZM2G028041 | 1 | Good | http://genomevolution.org/r/25ga |  | GRMZM2G452178 | Sb02g002200 | PAC:18182870 | Os07g03770 | Bradi1g57610 | http://genomevolution.org/r/26fl | GRMZM2G028041 | Identical Assignment
abp1 | 33 | auxin binding protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12008 | L08425 | chr3 | 1 | GRMZM2G116204 | 2 | Good | http://genomevolution.org/r/25pc |  | GRMZM2G078508 | Sb08g016760 | PAC:18189448 | too big a gap | Bradi4g06030 | http://genomevolution.org/r/25pd | GRMZM2G116204 | Identical Assignment
cat2 | 32 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12109 | X54819 | chr1 | -1 | GRMZM2G090568 | 1 | Good | http://genomevolution.org/r/25me |  | chr9:151513929-151692595 | Sb01g048280 | PAC:18191261 | Os03g03910 | Bradi1g76330 | http://genomevolution.org/r/25mf | GRMZM2G090568 | Identical Assignment
ts2 | 32 | tassel seed2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12691 | [NAME] | chr1 | 1 | GRMZM2G455809 | 1 | Good | http://genomevolution.org/r/25z5 |  | GRMZM2G308351 | Sb01g038050 | PAC:18190283 | Os03g18740 | Bradi1g64990 | http://genomevolution.org/r/25z6 | No Gene Identified by Maizesequence.org
dek1 | 31 | defective [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12148 | AY061806 | chr1 | 1 | GRMZM2G321753 | 1 | Good | http://genomevolution.org/r/25wd |  | chr9:136720786-136828257 | Sb01g037910 | PAC:18194992 | chr3:10491680-10834228 | chr1:63751534-64108197 | http://genomevolution.org/r/26if | GRMZM2G321753 | Identical Assignment
lg3 | 31 | liguleless3 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12388 | AF100455 | chr3 | 1 | GRMZM2G087741 | 1 | Good | http://genomevolution.org/r/25ly |  | chr8:36499080-36776428 | Sb03g012480 | PAC:18178064 | Os01g19694 | [NAME] | http://genomevolution.org/r/26gm | GRMZM2G087741 | Identical Assignment
du1 | 30 | dull endosperm1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12197 | AF023159 | chr10 | 1 | GRMZM2G141399 | 1 | Good | http://genomevolution.org/r/25rn |  | chr4:28021699-28172114 | Sb07g005400 | PAC:18187605 | Os08g09230 | [NAME] | http://genomevolution.org/r/26hm | No Gene Identified by Maizesequence.org
a2 | 28 | anthocyaninless2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12006 | X55314 | chr5 | 1 | GRMZM2G345717 | 1 | Good | http://genomevolution.org/r/25x1 |  | no synteny | Sb04g000260 | PAC:18174388 | chr2:0-600403 | chr3:0-692326 | http://genomevolution.org/r/26ij | No Gene Identified by Maizesequence.org
oy1 | 28 | oil yellow1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12515 | DQ084025 | chr10 | -1 | GRMZM2G419806 | 1 | Good | http://genomevolution.org/r/25yl |  | chr3:141438098-141616522 | Sb08g004300 | PAC:18189357 | chr12:3388067-4083733 | chr4:45277053-45732054 | http://genomevolution.org/r/26iv | GRMZM2G419806 | Identical Assignment
d8 | 27 | dwarf plant8 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12143 | AY103865 | chr1 | 1 | GRMZM2G144744 | 1 | Good | http://genomevolution.org/r/25rx |  | GRMZM2G024973 | Sb01g010660 | PAC:18190750 | Os03g49990 | Bradi1g11090 | http://genomevolution.org/r/25ry | No Gene Identified by Maizesequence.org
glb1 | 27 | globulin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12265 | U28017 | chr1 | 1 | GRMZM2G067919 | 1 | Good | http://genomevolution.org/r/25jk |  | chr5:14559084-14701706 | Sb01g012640 | PAC:18193532 | Os03g46100 | Bradi1g13040 | http://genomevolution.org/r/25jl | No Gene Identified by Maizesequence.org
lc1 | 27 | red leaf color1 |  | [NAME] | [NAME] | chr10 | 1 | GRMZM5G822829 | 2 | Good|lc1 | http://genomevolution.org/r/25zv |  | GRMZM2G172795 | Sb06g025060 | PAC:18202973 | Os04g47059 | chr5:20758637-21209681 | http://genomevolution.org/r/26j2 | No Gene Identified by Maizesequence.org
lg1 | 27 | liguleless1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12386 | AF451895 | chr2 | -1 | GRMZM2G036297 | 1 | Good|upstream sequence on wrong contig | http://genomevolution.org/r/25gw |  | GRMZM2G058588 | Sb06g031290 | PAC:18205642 | Os04g56170 | Bradi5g24670 | http://genomevolution.org/r/25gx | GRMZM2G036297 | Identical Assignment
ps1 | 27 | pink [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12562 | AY206862 | chr5 | -1 | GRMZM5G849107 | 1 | Good | http://genomevolution.org/r/260k | [NAME] | chr4:234355954-234475131 | Sb04g006120 | PAC:18174000 | Os02g09750 | Bradi3g06600 | http://genomevolution.org/r/26j6 | No Gene Identified by Maizesequence.org
rf2 | 27 | restorer of fertility2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12595 | U43082 | chr9 | 1 | GRMZM2G058675 | 1 | Good | http://genomevolution.org/r/25is |  | chr6:116073729-116329671 | Sb10g009790 | too big a gap | Os06g15990 | Bradi1g43770 | http://genomevolution.org/r/25it | GRMZM2G058675 | Identical Assignment
su2 | 27 | sugary2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12665 | AY499410 | chr6 | 1 | GRMZM2G348551 | 2 | 5' UTR and upsteam sequence missing | http://genomevolution.org/r/25x3 |  | GRMZM2G105791 | Sb10g008200 | PAC:18197830 | Os06g12450 | Bradi1g45130 | http://genomevolution.org/r/25x4 | No Gene Identified by Maizesequence.org
zpl2b | 27 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12803 | AF371270 | chr4 | 1 | GRMZM2G404459 | 1 | Good | [NAME] | GRMZM2G018193||GRMZM2G053120||GRMZM2G059620||GRMZM2G353268||GRMZM2G353272||GRMZM2G489581||GRMZM2G514379||GRMZM2G514469||GRMZM2G514479||GRMZM2G514485||GRMZM2G518465||GRMZM2G545000||GRMZM2G586611 | no synteny | too big a gap | too big a gap | chr11:22583954-23404386 | chr4:13981643-14703223 | http://genomevolution.org/r/26de | No Gene Identified by Maizesequence.org
whp1 | 26 | white pollen1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12750 | X60204 | chr2 | -1 | GRMZM2G151227 | 2 | Good | http://genomevolution.org/r/25sd | GRMZM2G027130||GRMZM5G818346 | too big a gap | too big a gap | too big a gap | Os11g32540 | Bradi4g17230 | http://genomevolution.org/r/26ah | No Gene Identified by Maizesequence.org
d3 | 25 | dwarf plant3 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12141 | [NAME] | chr9 | 1 | GRMZM2G093195 | 1 | Good | http://genomevolution.org/r/25mw |  | chr6:57352079-57627496 | Sb10g000920 | chr10:125337-554559 | Os06g02019 | Bradi1g51780 | http://genomevolution.org/r/26gs | No Gene Identified by Maizesequence.org
mn1 | 25 | miniature [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12429 | AF050631 | chr2 | 1 | GRMZM2G119689 | 1 | Good|probably | http://genomevolution.org/r/25py |  | GRMZM2G095725 | too big a gap | PAC:18205174 | Os04g33740 | Bradi5g09440 | http://genomevolution.org/r/25pz | No Gene Identified by Maizesequence.org
hm1 | 24 | Helminthosporium carbonum susceptibility1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12327 | L02540 | chr1 | 1 | GRMZM5G881887 | 1 | Good | http://genomevolution.org/r/260w |  | too big a gap | Sb07g023130 | too big a gap | too big a gap | too big a gap | http://genomevolution.org/r/26j9 | GRMZM5G881887 | Identical Assignment
mdh4 | 24 | malate dehydrogenase4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12416 | AA051891 | chr1 | -1 | GRMZM2G415359 | 1 | Can't proof | http://genomevolution.org/r/25yj |  | chr5:28284550-29105210 | Sb01g019280 | PAC:18196158 | Os10g33800 | Bradi3g28820 | http://genomevolution.org/r/25yk | No Gene Identified by Maizesequence.org
hrg1 | 23 | hydroxyproline rich glycoprotein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12329 | X63134 | chr2 | -1 | GRMZM2G168651 | 1 | Good | http://genomevolution.org/r/25ul |  | chr10:115098059-115489530 | Sb06g016310 | chr6:19404984-19923515 | Os04g34170 | [NAME] | http://genomevolution.org/r/26i5 | No Gene Identified by Maizesequence.org
ts6 | 23 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12694 | AF048900 | chr1 | 1 | GRMZM5G862109 | 1 | Good | http://genomevolution.org/r/260q | GRMZM5G880027 | chr5:2489170-2634044 | Sb01g003400 | PAC:18194463 | Os03g60430 | Bradi1g03880 | http://genomevolution.org/r/26j8 | No Gene Identified by Maizesequence.org
dhn1 | 22 | dehydrin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12580 | X15290 | chr6 | -1 | GRMZM2G079440 | 1 | Good | http://genomevolution.org/r/25kk |  | too big a gap | Sb09g018420 | chr9:13429273-14363327 | chr5:17019836-17955366 | chr2:26011100-27060633 | http://genomevolution.org/r/26g9 | GRMZM2G079440 | Identical Assignment
lg2 | 22 | liguleless2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12387 | AY180106 | chr3 | 1 | GRMZM2G060216 | 1 | Good | http://genomevolution.org/r/25iy |  | AC232238.2_FG004 | Sb03g040530 | PAC:18176817 | Os01g64020 | Bradi2g55570 | http://genomevolution.org/r/25iz | GRMZM2G060216 | Identical Assignment
zag1 | 22 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=51346 | L18924 | chr6 | -1 | GRMZM2G052890 | 1 | Good | http://genomevolution.org/r/25i4 | GRMZM2G052937 | too big a gap | Sb09g006360 | PAC:18169585 | Os05g11414 | Bradi2g32910 | http://genomevolution.org/r/25i5 | GRMZM2G052890 | Identical Assignment
gl8 | 21 | glossy8 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12263 | U89509 | chr5 | -1 | AC205703.4_FG006 | 1 | Good | http://genomevolution.org/r/25by |  | GRMZM2G087323 | Sb04g025020 | PAC:18171373 | Os02g38440 | Bradi3g47840 | http://genomevolution.org/r/25bz | No Gene Identified by Maizesequence.org
gpc1 | 21 | glyceraldehyde-3-phosphate dehydrogenase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12273 | X15596 | chr4 | -1 | GRMZM2G046804 | 2 | Good | http://genomevolution.org/r/25hq |  | GRMZM2G309356 | Sb07g002220 | PAC:18185953 | Os08g03290 | Bradi3g14120 | http://genomevolution.org/r/25hr | No Gene Identified by Maizesequence.org
hcf106 | 21 | high chlorophyll fluorescence106 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12290 | AF027808 | chr2 | 1 | GRMZM5G898735 | 1 | Good | http://genomevolution.org/r/2610 |  | GRMZM2G151529 | [NAME] | no synteny | chr4:19032798-19318750 | chr5:11499220-11629016 | http://genomevolution.org/r/26ja | GRMZM5G898735 | Identical Assignment
cr4 | 20 | crinkly4 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25017 | U67422 | chr10 | 1 | GRMZM2G051637 | 1 | Good | http://genomevolution.org/r/25i0 |  | chr3:231425129-231653501 | Sb08g003290 | no synteny | chr12:2558011-3036894 | Bradi4g41920 | http://genomevolution.org/r/26fw | GRMZM2G051637 | Identical Assignment
gst1 | 20 | glutathione-S-transferase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65345 | X06754 | chr8 | 1 | GRMZM2G116273 | 2 | Good | http://genomevolution.org/r/25pe |  | GRMZM2G156877 | Sb03g035420 | PAC:18175642 | Os01g55830 | Bradi2g50760 | http://genomevolution.org/r/25pf | GRMZM2G116273 | Identical Assignment
id1 | 20 | indeterminate [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12337 | AF058757 | chr1 | -1 | GRMZM2G011357 | 1 | Good | http://genomevolution.org/r/25dy |  | chr5:33236505-33343850 | Sb01g021480 | PAC:18191878 | Os10g28330 | Bradi3g26910 | http://genomevolution.org/r/26f7 | No Gene Identified by Maizesequence.org
mdh2 | 20 | malate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12414 | AY103861 | chr6 | -1 | GRMZM2G154595 | 1 | Good | http://genomevolution.org/r/25st |  | chr8:72698131-72983403 | Sb09g029240 | PAC:18167991 | Os05g49880 | Bradi2g15740 | http://genomevolution.org/r/25su | No Gene Identified by Maizesequence.org
ra1 | 20 | ramosa1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12577 | AY957396 | chr7 | 1 | GRMZM2G003927 | 1 | Good | http://genomevolution.org/r/25d4 |  | chr2:179695452-179860237 | Sb02g024400 | PAC:18181127 | chr9:14417584-14918349 | chr4:35561970-36022395 | http://genomevolution.org/r/26f3 | No Gene Identified by Maizesequence.org
te1 | 20 | terminal ear1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12673 | AF047852 | chr3 | -1 | GRMZM2G085113 | 1 | Good | http://genomevolution.org/r/25le |  | chr8:163425671-163563084 | Sb03g043230 | PAC:18179083 | Os01g68000 | Bradi2g58100 | http://genomevolution.org/r/26gh | GRMZM2G085113 | Identical Assignment
nnr1 | 19 | nitrate reductase(NADH)1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25900 | M77792 | chr4 | 1 | GRMZM2G568636 | 2 | Good | http://genomevolution.org/r/25zl |  | GRMZM2G076723 | Sb07g022750 | PAC:18187549 | Os08g36480 | Bradi3g37940 | http://genomevolution.org/r/25zm | No Gene Identified by Maizesequence.org
ns1 | 19 | narrow [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61077 | AJ536578 | chr2 | 1 | GRMZM2G069028 | 2 | Good | http://genomevolution.org/r/25jo |  | chr4:190002890-190313390 | Sb05g003490 | no synteny | no synteny | no synteny | http://genomevolution.org/r/25jp | No Gene Identified by Maizesequence.org
sn1 | 19 | scutellar [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12643 | X60706 | chr10 | 1 | GRMZM5G822829 | 2 | Good|lc1 | http://genomevolution.org/r/25zx |  | GRMZM2G172795 | Sb06g025060 | PAC:18202973 | Os04g47059 | chr5:20758637-21209681 | http://genomevolution.org/r/26j2 | No Gene Identified by Maizesequence.org
afd1 | 18 | absence of first division1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12029 | AY788900 | chr6 | 1 | GRMZM2G059037 | 1 | Good | http://genomevolution.org/r/25iu |  | too big a gap | Sb09g029640 | PAC:18169550 | Os05g50410 | Bradi2g15000 | http://genomevolution.org/r/25iv | No Gene Identified by Maizesequence.org
chi1 | 18 | chalcone flavanone isomerase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=56908 | Z22760 | chr1 | -1 | GRMZM2G155329 | 1 | Good | http://genomevolution.org/r/25t5 |  | GRMZM2G119186 | Sb01g003330 | PAC:18191923 | Os03g60509 | Bradi1g03840 | http://genomevolution.org/r/25t6 | No Gene Identified by Maizesequence.org
[NAME] | 18 | ribulose bisphosphate carboxylase small subunit1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12660 | X06535 | chr4 | -1 | GRMZM2G098520 | 1 | Good | http://genomevolution.org/r/25ne |  | GRMZM2G113033 | Sb05g003480 | too big a gap | too big a gap | no synteny | http://genomevolution.org/r/25nf | GRMZM2G098520 | Identical Assignment
tan1 | 18 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12573 | AF305892 | chr6 | -1 | GRMZM2G039113 | 1 | Good | http://genomevolution.org/r/25ha |  | chr8:113583954-115283766 | Sb09g018850 | chr9:15243100-16118097 | chr5:18275913-19077686 | chr2:25065226-25832415 | http://genomevolution.org/r/2654 | GRMZM2G039113 | Identical Assignment
[NAME] | 18 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12692 | GQ905588 | chr3 | 1 | GRMZM5G803935 | 1 | why does a microRNA have a CDS? | http://genomevolution.org/r/261d |  | chr8:156584896-157320339 | chr3:73688749-74313024 | chr3:45544758-45931421 | chr1:42689358-43324564 | chr2:58526614-58975721 | http://genomevolution.org/r/26es | No Gene Identified by Maizesequence.org
g2 | 17 | golden plant2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12229 | AF298118 | chr3 | 1 | GRMZM2G087804 | 1 | Good | http://genomevolution.org/r/25m0 | GRMZM2G087961 | chr8:29564530-29765690 | Sb03g000400 | [NAME] | Os01g13740 | Bradi2g08290 | http://genomevolution.org/r/25m1 | No Gene Identified by Maizesequence.org
gpa1 | 17 | glyceraldehyde-3-phosphate dehydrogenase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12272 | X07157 | chr2 | -1 | GRMZM2G337113 | 1 | Good | http://genomevolution.org/r/25wp | GRMZM2G337196 | GRMZM2G337196 | Sb06g018880 | PAC:18205245 | Os04g38600 | Bradi5g12330 | http://genomevolution.org/r/25wq | GRMZM2G337113 | Identical Assignment
orp1 | 17 | orange pericarp1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12512 | M76684 | chr4 | -1 | GRMZM2G169593 | 2 | Good | http://genomevolution.org/r/25ur | GRMZM5G896346 | GRMZM2G005024 | Sb07g002770 | PAC:18186811 | Os08g04180 | Bradi3g14490 | http://genomevolution.org/r/25us | No Gene Identified by Maizesequence.org
sod4 | 17 | superoxide [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12648 | X17565 | chr1 | 1 | GRMZM2G169890 | 1 | Good | http://genomevolution.org/r/25ut |  | GRMZM2G058522 | Sb01g035350 | PAC:18195462 | Os03g22810 | chr1:61177186-61692813 | http://genomevolution.org/r/26i7 | No Gene Identified by Maizesequence.org
tua1 | 17 | alpha tubulin1 |  | [NAME] | X63176 | chr5 | -1 | AC195340.3_FG001 | 2 | Good | http://genomevolution.org/r/25bo |  | chr1:282357761-282457761 | Sb01g006710 | PAC:18194413 | Os03g56810 | Bradi1g07200 | http://genomevolution.org/r/26ew | No Gene Identified by Maizesequence.org
[NAME] | 16 | acetyl-coenzyme A carboxylase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12011 | Z24449 | chr2 | 1 | GRMZM5G858094 |  | Good | http://genomevolution.org/r/260m |  | too big a gap | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/260n | GRMZM5G858094 | Identical Assignment
ald1 | 16 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25011 | X12872 | chr3 | 1 | GRMZM2G057823 | 1 | Good | http://genomevolution.org/r/25ii |  | GRMZM2G066024 | Sb03g043140 | PAC:18178636 | Os01g67860 | Bradi2g58050 | http://genomevolution.org/r/25ij | GRMZM2G057823 | Identical Assignment
bm1 | 16 | brown midrib1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12079 | AJ005702 | chr5 | -1 | GRMZM5G844562 | 1 | Good | http://genomevolution.org/r/260e | GRMZM5G868202 | chr4:234516765-234621179 | Sb04g005950 | PAC:18174304 | Os02g09490 | [NAME] | http://genomevolution.org/r/260f | No Gene Identified by Maizesequence.org
gl15 | 16 | glossy15 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12247 | U41466 | chr9 | 1 | GRMZM2G160730 | 1 | Good|neither transcript completely accurate | http://genomevolution.org/r/25tv |  | chr6:97182227-97322477 | Sb10g025053 | PAC:18197224 | Os06g43220 | Bradi1g30340 | http://genomevolution.org/r/26hz | No Gene Identified by Maizesequence.org
gl2 | 16 | glossy2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12252 | AY109951 | chr2 | -1 | GRMZM2G098239 | 1 | Good | http://genomevolution.org/r/25n6 | GRMZM5G867147 | chr10:141866441-141991403 | Sb06g028160 | PAC:18204529 | Os04g52164 | Bradi5g21350 | http://genomevolution.org/r/26gt | No Gene Identified by Maizesequence.org
rld1 | 16 | rolled leaf1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30011 | AY501430 | chr9 | -1 | GRMZM2G109987 | 2 | Good | http://genomevolution.org/r/25om |  | GRMZM2G042250 | Sb01g050000 | too big a gap | Os03g01890 | no synteny | http://genomevolution.org/r/26h4 | GRMZM2G109987 | Identical Assignment
ubi2 | 16 | ubiquitin2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=26025 | S94466 | chr4 | 1 | GRMZM2G419891 | 2 | Good | http://genomevolution.org/r/25yn | GRMZM2G118637||GRMZM2G419844 | GRMZM2G118637 | Sb04g004260 | PAC:18174495 | Os02g06640 | Bradi3g04730 | http://genomevolution.org/r/25yo | No Gene Identified by Maizesequence.org
[NAME] | 16 | [NAME] mays MADS2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41345 | X81200 | chr8 | -1 | GRMZM2G359952 | 2 | Good | http://genomevolution.org/r/25xb |  | GRMZM2G471089 | Sb03g002525 | PAC:18176984 | [NAME] | Bradi2g06330 | http://genomevolution.org/r/25xc | No Gene Identified by Maizesequence.org
zp27 | 16 | 27-kDa [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=58113 | M16218 | chr7 | 1 | GRMZM2G138727 | 1 | Good | http://genomevolution.org/r/25re | GRMZM2G438538 | GRMZM2G060429 | Sb02g025510 | PAC:18180925 | chr9:15882395-16462627 | chr4:36700872-37221819 | http://genomevolution.org/r/26hk | No Gene Identified by Maizesequence.org
am1 | 15 | ameiotic1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12041 | DQ663482 | chr5 | 1 | GRMZM5G883855 | 2 | Good | http://genomevolution.org/r/260y |  | chr1:260098992-260389679 | Sb01g013215 | PAC:18195042 | Os03g44760 | Bradi1g13530 | http://genomevolution.org/r/260z | No Gene Identified by Maizesequence.org
bx1 | 15 | benzoxazinless1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12097 | X76713 | chr4 | 1 | GRMZM2G085381 | 1 | Good | http://genomevolution.org/r/25lg |  | no synteny | chr5:58868109-59571565 | chr5:36542777-37504728 | chr11:25708564-25959495 | chr4:10814041-11688511 | http://genomevolution.org/r/2673 | GRMZM2G085381 | Identical Assignment
eno1 | 15 | enolase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25430 | [NAME] | chr9 | 1 | GRMZM2G064302 | 1 | Good | http://genomevolution.org/r/25j8 |  | GRMZM2G446253 | Sb10g002460 | PAC:18199696 | Os06g04510 | Bradi1g51540 | http://genomevolution.org/r/25j9 | GRMZM2G064302 | Identical Assignment
[NAME] | 15 | glutathione S-transferase4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=69159 | W49853 | chr3 | -1 | GRMZM2G146246 | 1 | Good | http://genomevolution.org/r/25s3 | GRMZM5G849767 | chr8:159649795-159755381 | Sb03g044980 | PAC:18178334 | Os01g70770 | Bradi2g59860 | http://genomevolution.org/r/26ac | GRMZM2G146246 | Identical Assignment
[NAME] | 15 | iojap striping1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12341 | Z15063 | chr7 | -1 | GRMZM2G004583 | 1 | Good | http://genomevolution.org/r/25d6 |  | chr2:190454718-190725264 | Sb02g028720 | PAC:18183086 | Os09g32030 | chr4:39634982-40329070 | http://genomevolution.org/r/26f4 | No Gene Identified by Maizesequence.org
mgs1 | 15 | male-gametophyte specific1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12425 | S44171 | chr10 | -1 | GRMZM2G317406 | 2 | weird | http://genomevolution.org/r/25w9 |  | GRMZM2G022347 | Sb06g014740 | PAC:18203031 | Os04g32680 | Bradi5g08410 | http://genomevolution.org/r/25wa | GRMZM2G317406 | Identical Assignment
pep4 | 15 | phosphoenolpyruvate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30069 | X61489 | chr7 | -1 | GRMZM2G473001 | 1 | Good | http://genomevolution.org/r/25zd |  | chr2:174901978-175030726 | Sb02g021090 | [NAME] | Os09g14670 | Bradi4g27910 | http://genomevolution.org/r/26iz | GRMZM2G473001 | Identical Assignment
pex1 | 15 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=105329 | Z34465 | chr2 | -1 | GRMZM5G841015 | 2 | Good | http://genomevolution.org/r/260a | GRMZM2G453012 | GRMZM2G478920 | too big a gap | too big a gap | no synteny | no synteny | [NAME] | No Gene Identified by Maizesequence.org
ts1 | 15 | tassel [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12690 | FJ360855 | chr2 | -1 | GRMZM2G104843 | 1 | Good | http://genomevolution.org/r/25o8 |  | GRMZM2G070092 | Sb06g018040 | PAC:18205149 | Os04g37430 | Bradi5g11590 | http://genomevolution.org/r/26h0 | No Gene Identified by Maizesequence.org
vp8 | 15 | viviparous8 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12735 | EU401893 | chr1 | 1 | GRMZM2G010353 | 1 | Good | http://genomevolution.org/r/25ds |  | chr5:4540653-4656574 | Sb01g005710 | PAC:18190510 | Os03g57660 | Bradi1g06230 | http://genomevolution.org/r/26f6 | No Gene Identified by Maizesequence.org
ivr2 | 14 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=97587 | AJ563384 | chr5 | 1 | GRMZM2G089836 | 1 | Good | http://genomevolution.org/r/25ma | GRMZM5G863665||GRMZM5G890000 | GRMZM2G463871 | Sb04g000620 | PAC:18170956 | Os02g01590 | Bradi3g00910 | http://genomevolution.org/r/25mb | No Gene Identified by Maizesequence.org
pal1 | 14 | phenylalanine ammonia lyase homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=24853 | M95077 | chr5 | -1 | GRMZM2G074604 | 1 | Can't proof | http://genomevolution.org/r/25ka | GRMZM2G029048||GRMZM2G170692||GRMZM2G334655||GRMZM2G334660 | GRMZM2G063917 | Sb04g026530 | PAC:18172878 | Os02g41680 | Bradi3g49280 | http://genomevolution.org/r/266k | No Gene Identified by Maizesequence.org
pgd2 | 14 | 6-phosphogluconate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12541 | AF061837 | chr3 | -1 | GRMZM2G145715 | 1 | Good | http://genomevolution.org/r/25s1 |  | chr8:159364527-159539471 | Sb03g045216 | PAC:18175594 | chr1:41194784-41479544 | chr2:57291361-57599656 | http://genomevolution.org/r/26ho | GRMZM2G127798 | Different Assignment | http://genomevolution.org/r/26jx | Two independent GenBank records show greater sequence similarity to the gene we identified than the one identified by maizesequence.org. Our gene is located on the correct chromosome according to maizegdb.
ra2 | 14 | ramosa2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12578 | BT035538 | chr3 | 1 | AC233943.1_FG002 | 1 | UTR exon skipped my maizesequence.org | http://genomevolution.org/r/25cc |  | chr8:16720630-16902749 | Sb03g004590 | PAC:18177818 | [NAME] | Bradi2g04270 | http://genomevolution.org/r/26f0 | AC233943.1_FG002 | Identical Assignment
sod3 | 14 | superoxide [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12647 | M33119 | chr6 | 1 | GRMZM2G059991 | 1 | Good | http://genomevolution.org/r/25iw |  | chr8:111951684-113683954 | too big a gap | PAC:18168219 | Os05g25850 | no synteny | http://genomevolution.org/r/25ix | No Gene Identified by Maizesequence.org
tga1 | 14 | teosinte glume architecture1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30019 | AY883559 | chr4 | 1 | GRMZM2G101511 | 2 | Good | http://genomevolution.org/r/25ns | AC233751.1_FG002 | chr1:193887423-194264951 | Sb07g026220 | PAC:18187658 | Os08g41940 | Bradi3g41250 | http://genomevolution.org/r/2687 | No Gene Identified by Maizesequence.org
tpi4 | 14 | triose phosphate isomerase4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12683 | L00371 | chr8 | -1 | GRMZM2G018177 | 2 | Good | http://genomevolution.org/r/25f2 |  | GRMZM2G030784 | Sb03g006130 | PAC:18178187 | Os01g05490 | Bradi2g03170 | http://genomevolution.org/r/26fg | No Gene Identified by Maizesequence.org
ys1 | 14 | yellow stripe1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12782 | AF186234 | chr5 | -1 | GRMZM2G156599 | 1 | Good | http://genomevolution.org/r/25tb |  | chr4:150523936-150867960 | Sb04g033345 | PAC:18173965 | Os02g43370 | Bradi3g50260 | http://genomevolution.org/r/26ax | GRMZM2G156599 | Identical Assignment
zp1 | 14 | [NAME] protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=114061 | X58700 | chr4 | 1 | GRMZM2G008913 | 2 | Good|inversion in nongene sequence downstream of gene | http://genomevolution.org/r/25dk |  | too big a gap | too big a gap | chr7:4199018-5195813 | too big a gap | chr3:13774253-14654833 | http://genomevolution.org/r/263b | No Gene Identified by Maizesequence.org
emp2 | 13 | empty pericarp 2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25913 | AF494285 | chr2 | -1 | GRMZM2G039155 | 2 | Good | http://genomevolution.org/r/25hc |  | AC194174.3_FG003 | Sb02g023500 | PAC:18183966 | Os09g20830 | Bradi4g29260 | http://genomevolution.org/r/25hd | GRMZM2G039155 | Identical Assignment
[NAME] | 13 | gnarley1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64424 | AY312168 | chr2 | 1 | GRMZM2G452178 | 2 | Good | http://genomevolution.org/r/25z3 |  | GRMZM2G028041 | Sb02g002200 | PAC:18182870 | Os03g56110 | chr1:57050313-57583241 | [NAME] | No Gene Identified by Maizesequence.org
gpc3 | 13 | glyceraldehyde-3-phosphate dehydrogenase3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12275 | L13431 | chr4 | 1 | GRMZM2G071630 | 2 | Good | http://genomevolution.org/r/25js | GRMZM2G072119 | GRMZM2G176307 | Sb04g025120 | PAC:18171250 | Os02g38920 | chr3:49435893-49751745 | http://genomevolution.org/r/25jt | No Gene Identified by Maizesequence.org
hsp18f | 13 | heat shock protein18f |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66502 | X54076 | chr3 | -1 | GRMZM2G083810 | 1 | Good | http://genomevolution.org/r/25l2 |  | GRMZM2G034157 | Sb03g003530 | PAC:18175500 | Os01g08860 | Bradi2g05380 | http://genomevolution.org/r/26ge | GRMZM2G083810 | Identical Assignment
ig1 | 13 | indeterminate gametophyte1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12340 | EF081454 | chr3 | -1 | GRMZM2G118250 | 1 | Good | http://genomevolution.org/r/25pu | GRMZM2G419929 | GRMZM2G133806 | Sb03g042310 | PAC:18179844 | Os01g66590 | Bradi2g57380 | http://genomevolution.org/r/26hb | No Gene Identified by Maizesequence.org
lhcb1 | 13 | [NAME] a/b binding protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25701 | M87020 | chr8 | 1 | GRMZM2G351977 | 2 | Can't proof | http://genomevolution.org/r/25x5 |  | GRMZM2G406438 | too big a gap | PAC:18176513 | Os01g41710 | chr2:43142710-43990546 | http://genomevolution.org/r/26ct | No Gene Identified by Maizesequence.org
orp2 | 13 | orange [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12513 | M76685 | chr10 | -1 | GRMZM2G005024 | 1 | Split into two transcripts? | http://genomevolution.org/r/25d8 |  | GRMZM2G169593 | Sb07g002770 | PAC:18186811 | Os08g04180 | Bradi3g14490 | http://genomevolution.org/r/25d9 | No Gene Identified by Maizesequence.org
et1 | 12 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12218 | AJ507104 | chr3 | -1 | GRMZM2G157574 | 1 | Good | http://genomevolution.org/r/25th | GRMZM5G887575 | chr8:141862797-141979888 | Sb03g027210 | PAC:18179252 | Os01g42050 | Bradi2g42950 | http://genomevolution.org/r/26hv | No Gene Identified by Maizesequence.org
lls1 | 12 | lethal leaf spot1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12391 | U77345 | chr1 | 1 | GRMZM2G339563 | 1 | Good | http://genomevolution.org/r/25wx |  | chr9:152387084-152491999 | Sb01g047120 | PAC:18192897 | Os03g05310 | Bradi1g75270 | http://genomevolution.org/r/26ii | GRMZM2G339563 | Identical Assignment
sbe1 | 12 | starch branching enzyme1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30166 | D11081 | chr5 | -1 | GRMZM2G088753 | 1 | Good | http://genomevolution.org/r/25m6 |  | GRMZM2G169073 | Sb10g030776 | PAC:18199001 | Os06g51084 | Bradi1g29850 | http://genomevolution.org/r/25m7 | GRMZM2G088753 | Identical Assignment
sod2 | 12 | superoxide [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25374 | M54936 | chr7 | -1 | GRMZM2G025992 | 1 | Good | http://genomevolution.org/r/25fy | GRMZM2G027777 | chr2:215465690-215570676 | Sb02g042170 | PAC:18183174 | Os07g46990 | Bradi1g18340 | http://genomevolution.org/r/26fj | No Gene Identified by Maizesequence.org
act1 | 11 | actin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12019 | J01238 | chr8 | -1 | GRMZM2G126010 | 2 | Good | http://genomevolution.org/r/25qi | GRMZM2G126069 | chr6:149075092-149213760 | Sb09g021660 | PAC:18170041 | Os05g36290 | Bradi2g24070 | http://genomevolution.org/r/269k | No Gene Identified by Maizesequence.org
gln1 | 11 | glutamine synthetase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61733 | X65931 | chr10 | -1 | GRMZM2G098290 | 2 | Good | http://genomevolution.org/r/25n8 |  | chr2:3921542-4024780 | Sb06g031460 | PAC:18203112 | Os04g56400 | Bradi5g24550 | http://genomevolution.org/r/26gu | GRMZM2G098290 | Identical Assignment
gln4 | 11 | glutamine synthetase4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61724 | X65928 | chr5 | -1 | GRMZM5G872068 | 1 | Good | http://genomevolution.org/r/260s |  | GRMZM2G036464 | Sb04g028690 | PAC:18171543 | Os02g50240 | Bradi3g59970 | http://genomevolution.org/r/260t | No Gene Identified by Maizesequence.org
gpc2 | 11 | glyceraldehyde-3-phosphate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12274 | U45858 | chr6 | -1 | GRMZM2G180625 | 1 | Good | http://genomevolution.org/r/25vr |  | GRMZM2G046804 | Sb07g002220 | PAC:18185953 | Os08g03290 | Bradi3g14120 | http://genomevolution.org/r/26id | No Gene Identified by Maizesequence.org
hmg1 | 11 | high mobility group protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=69146 | X66077 | chr5 | -1 | GRMZM5G834758 | 1 | Good | http://genomevolution.org/r/2602 |  | [NAME] | Sb10g030910 | PAC:18197613 | Os06g51220 | Bradi1g29730 | http://genomevolution.org/r/2603 | No Gene Identified by Maizesequence.org
phyA1 | 11 | phytochromeA1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41144 | AY234826 | chr1 | -1 | GRMZM2G157727 | 1 | Good | http://genomevolution.org/r/25tj | GRMZM5G895731 | GRMZM2G181028 | Sb01g009920 | PAC:18192183 | Os03g51030 | Bradi1g10510 | http://genomevolution.org/r/25tk | No Gene Identified by Maizesequence.org
prp2 | 11 | pathogenesis-related [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=57239 | T18697 | chr2 | -1 | GRMZM2G102356 | 1 | Good | http://genomevolution.org/r/25ny | GRMZM5G809105 | chr10:123639807-123863085 | Sb06g019320 | PAC:18204567 | Os04g39150 | Bradi5g12740 | http://genomevolution.org/r/268a | No Gene Identified by Maizesequence.org
si1 | 11 | silky1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61653 | AF181479 | chr6 | 1 | GRMZM2G139073 | 2 | Good | http://genomevolution.org/r/25rh |  | chr5:60084734-60299771 | Sb10g029810 | PAC:18198773 | Os06g49840 | Bradi1g35000 | http://genomevolution.org/r/26hl | GRMZM2G139073 | Identical Assignment
tdy1 | 11 | tie-dyed1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9017733 | FJ376984 | chr6 | 1 | GRMZM2G321778 | 1 | Good | http://genomevolution.org/r/25wf |  | too big a gap | Sb09g029660 | PAC:18169089 | Os05g50470 | Bradi2g15230 | http://genomevolution.org/r/25wg | No Gene Identified by Maizesequence.org
zp15 | 11 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40417 | [NAME] | chr6 | -1 | GRMZM2G086294 | 1 | Good | http://genomevolution.org/r/25lm |  | chr8:135041218-135189577 | Sb09g000360 | PAC:18169211 | chr5:0-218039 | chr2:39879964-40060324 | http://genomevolution.org/r/26gi | No Gene Identified by Maizesequence.org
[NAME] | 10 | cytokinin oxidase1 |  | [NAME] | Y18377 | chr3 |  | GRMZM2G146644 | 1 | wrong exons in middle of transcript-real ones missing | http://genomevolution.org/r/25s5 |  | GRMZM2G350818 | Sb03g003300 | PAC:18179912 | Os01g09246 | Bradi2g05210 | http://genomevolution.org/r/26hp | No Gene Identified by Maizesequence.org
crp1 | 10 | chloroplast RNA processing1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25995 | AF073522 | chr7 | -1 | GRMZM2G083950 | 1 | Good | http://genomevolution.org/r/25l6 |  | chr2:204289880-204392064 | Sb02g035800 | [NAME] | Os07g36390 | chr1:20107149-20625472 | http://genomevolution.org/r/26gg | GRMZM2G083950 | Identical Assignment
glu2 | 10 | beta-glucosidase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61768 | U44087 | chr10 | 1 | [NAME] | 1 | Good | http://genomevolution.org/r/25di |  | no synteny | no synteny | no synteny | chr12:7256295-7525701 | chr4:44193745-44372611 | http://genomevolution.org/r/263a | [NAME] | Identical Assignment
got2 | 10 | glutamate-oxaloacetate transaminase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12270 | AY105250 | chr5 | 1 | GRMZM5G836910 | 1 | Good | http://genomevolution.org/r/2608 |  | chr4:173578535-173764524 | Sb04g036060 | PAC:18170736 | Os02g55420 | Bradi3g54200 | http://genomevolution.org/r/26j4 | No Gene Identified by Maizesequence.org
[NAME] | 10 | knotted related homeobox3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66089 | DQ056238 | chr1 | -1 | GRMZM2G000743 | 1 | Can't proof | http://genomevolution.org/r/25cu |  | chr5:9139999-9295991 | [NAME] | PAC:18190991 | Os03g51710 | Bradi1g10050 | http://genomevolution.org/r/262y | No Gene Identified by Maizesequence.org
lg4 | 10 | liguleless4 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12389 | AF457118 | chr8 | 1 | GRMZM2G094241 | 2 | Good | http://genomevolution.org/r/25my |  | GRMZM5G832409 | Sb09g002520 | PAC:18167868 | Os05g03884 | [NAME] | [NAME] | GRMZM2G094241 | Identical Assignment
me3 | 10 | NADP malic enzyme3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30034 | J05130 | chr3 | 1 | GRMZM2G085019 | 1 | Good | http://genomevolution.org/r/25lc |  | GRMZM5G886257 | Sb03g003220 | PAC:18175652 | Os01g09320 | Bradi2g05620 | http://genomevolution.org/r/25ld | GRMZM2G085019 | Identical Assignment
rrb1 | 10 | related to retinoblastoma1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82119 | AF007793 | chr2 | -1 | [NAME] | 2 | Good | http://genomevolution.org/r/25d0 |  | GRMZM2G153150 | Sb05g020280 | PAC:18200421 | Os11g32900 | Bradi4g17210 | http://genomevolution.org/r/26f2 | No Gene Identified by Maizesequence.org
[NAME] | 10 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=51351 | L18925 | chr3 | -1 | GRMZM2G160687 | 2 | Good | http://genomevolution.org/r/25tt |  | GRMZM2G010669 | Sb08g006460 | PAC:18188404 | Os12g10540 | Bradi4g40350 | http://genomevolution.org/r/25tu | GRMZM2G160687 | Identical Assignment
zap1 | 10 | [NAME] homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41316 |  | chr2 | 1 | GRMZM2G148693 | 2 | Assignment corrected by maizesequence.org |  |  | GRMZM2G072582 |  |  |  |  |  | GRMZM2G148693 | Different Assignment | http://genomevolution.org/r/26k9 | Our record was supported by two ESTs | maizesequence.orgs was supported by two other GenBank records. Their gene agrees with the genetic location of zap1 | so I've switched our record
abph1 | 9 | aberrant [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=111820 | AB042260 | chr2 | -1 | GRMZM2G035688 | 1 | Good | http://genomevolution.org/r/25gs |  | chr10:131748094-131940204 | Sb06g022960 | PAC:18203774 | Os04g44280 | Bradi5g16130 | http://genomevolution.org/r/26fn | No Gene Identified by Maizesequence.org
[NAME] | 9 | alpha [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61401 | L25805 | chr2 | 1 | GRMZM2G138468 | 2 | Good | http://genomevolution.org/r/25rc | GRMZM2G566151 | [NAME] | Sb02g026610 | PAC:18182014 | Os09g28400 | [NAME] | http://genomevolution.org/r/25rd | No Gene Identified by Maizesequence.org
bap2 | 9 | basal layer antifungal [NAME] |  | [NAME] | AJ133529 | chr4 | 1 | GRMZM2G152655 | 2 | Good | http://genomevolution.org/r/25sj | GRMZM2G027472 | GRMZM2G008403 | Sb07g003420 | too big a gap | too big a gap | too big a gap | http://genomevolution.org/r/26hr | No Gene Identified by Maizesequence.org
bd1 | 9 | branched silkless1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12070 | AY196003 | chr7 | -1 | GRMZM2G307119 | 1 | Good | http://genomevolution.org/r/25vz |  | GRMZM2G458437 | Sb02g042400 | PAC:18182907 | Os07g47330 | Bradi1g18580 | http://genomevolution.org/r/25w0 | GRMZM2G307119 | Identical Assignment
bif2 | 9 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=60438 | EF532402 | chr1 | 1 | GRMZM2G171822 | 1 | deletion within first exon | http://genomevolution.org/r/25uz |  | too big a gap | Sb08g021520 | PAC:18189421 | Os12g42050 | Bradi4g01680 | http://genomevolution.org/r/25v0 | No Gene Identified by Maizesequence.org
bsd2 | 9 | bundle sheath [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=112957 | AF126742 | chr1 | 1 | GRMZM2G062788 | 1 | Good | http://genomevolution.org/r/25j4 |  | no synteny | chr8:49843172-50129204 | chr8:17214801-17370828 | chr12:23768068-24054915 | chr4:2828991-3040444 | http://genomevolution.org/r/2660 | No Gene Identified by Maizesequence.org
fer1 | 9 | ferritin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25281 | X61391 | chr4 | -1 | GRMZM2G325575 | 1 | Good | http://genomevolution.org/r/25wh |  | GRMZM2G325479 | Sb05g000530 | PAC:18200503 | Os11g01530 | no synteny | http://genomevolution.org/r/25wi | GRMZM2G325575 | Identical Assignment
glb2 | 9 | globulin2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12266 | X53715 | chr1 | -1 | GRMZM2G026703 | 1 | Good | http://genomevolution.org/r/25g4 |  | chr5:4380408-4520862 | Sb01g005440 | PAC:18190926 | Os03g57960 | Bradi1g05910 | http://genomevolution.org/r/26fk | No Gene Identified by Maizesequence.org
gln2 | 9 | glutamine [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40408 | X65927 | chr1 | -1 | GRMZM2G024104 | 1 | Good | http://genomevolution.org/r/25fm |  | chr5:10749047-10908704 | Sb01g010270 | PAC:18193601 | Os03g50490 | Bradi1g11450 | http://genomevolution.org/r/26fi | No Gene Identified by Maizesequence.org
gln5 | 9 | glutamine synthetase5 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61726 | X65929 | chr4 | -1 | GRMZM2G036464 | 2 | Good | http://genomevolution.org/r/25gy |  | GRMZM5G872068 | Sb04g028690 | PAC:18171543 | Os02g50240 | Bradi3g59970 | http://genomevolution.org/r/25gz | No Gene Identified by Maizesequence.org
gln6 | 9 | glutamine [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=116219 | X65926 | chr1 | -1 | GRMZM2G050514 | 1 | Good | http://genomevolution.org/r/25hw |  | GRMZM5G887009 | Sb01g042450 | PAC:18195278 | Os03g12290 | Bradi1g69530 | http://genomevolution.org/r/25hx | No Gene Identified by Maizesequence.org
hsp18c | 9 | heat shock [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66500 | X54075 | chr8 | 1 | GRMZM2G034157 | 2 | Upstream UTR missing | http://genomevolution.org/r/25gm |  | too big a gap | too big a gap | too big a gap | too big a gap | Bradi2g05380 | http://genomevolution.org/r/264s | No Gene Identified by Maizesequence.org
im30p1 | 9 | IM30 protein homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40659 | T12745 | chr3 | -1 | GRMZM2G017077 | 1 | Can't proof | http://genomevolution.org/r/25ew |  | GRMZM2G024607 | Sb03g042550 | PAC:18175954 | Os01g67000 | Bradi2g56880 | http://genomevolution.org/r/26fd | No Gene Identified by Maizesequence.org
ivr1 | 9 | invertase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=86038 | U16123 | chr2 | -1 | GRMZM2G394450 | 1 | Good | http://genomevolution.org/r/25xz |  | chr10:132925396-133160604 | Sb06g023760 | PAC:18205389 | Os04g45290 | Bradi5g16900 | http://genomevolution.org/r/26io | No Gene Identified by Maizesequence.org
ole3 | 9 | oleosin3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65605 | J05212 | chr5 | -1 | AC206941.2_FG002 | 2 | 3' UTR split into separate gene model | http://genomevolution.org/r/25c0 |  | GRMZM2G480951 | Sb01g011120 | chr1:8025081-8911585 | Os03g49190 | Bradi1g11750 | http://genomevolution.org/r/262m | No Gene Identified by Maizesequence.org
rab15 | 9 | responsive to abscisic acid15 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=69263 | [NAME] | chr5 | -1 | [NAME] | 2 | Good | http://genomevolution.org/r/25ub | GRMZM2G166026 | chr1:257760112-258744975 | Sb01g012300 | chr1:9250183-9757772 | Os03g46770 | Bradi1g12790 | http://genomevolution.org/r/26i4 | No Gene Identified by Maizesequence.org
rgd1 | 9 | ragged seedling1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12602 | DQ832257 | chr6 | 1 | GRMZM2G020187 |  | Good | http://genomevolution.org/r/25fg |  | no synteny | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/25fh | No Gene Identified by Maizesequence.org
rs2 | 9 | rough sheath2 | Y | [NAME] | AF143447 | chr1 | -1 | GRMZM2G403620 | 1 | Good | http://genomevolution.org/r/25y9 |  | chr3:125695993-125944270 | Sb08g018840 | too big a gap | Os12g38400 | Bradi4g03970 | http://genomevolution.org/r/26ir | GRMZM2G403620 | Identical Assignment
ssu2 | 9 | ribulose bisphosphate carboxylase small [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12661 | Y09214 | chr2 | 1 | GRMZM2G113033 | 2 | Good | http://genomevolution.org/r/25p2 |  | GRMZM2G098520 | Sb05g003480 | no synteny | no synteny | no synteny | http://genomevolution.org/r/25p3 | No Gene Identified by Maizesequence.org
tub1 | 9 | beta tubulin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=24942 | X52878 | chr1 | 1 | GRMZM2G164696 | 1 | Good | http://genomevolution.org/r/25u5 |  | chr9:155132417-155330142 | Sb01g050310 | chr1:54908633-55495596 | Os03g01530 | Bradi1g78210 | http://genomevolution.org/r/26i2 | No Gene Identified by Maizesequence.org
ba1 | 8 | barren stalk1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12066 | AY753892 | chr3 | 1 | GRMZM2G397518 | 1 | Good | http://genomevolution.org/r/25y1 |  | chr8:169643060-169829550 | Sb03g038820 | PAC:18178496 | Os01g61480 | Bradi2g54030 | http://genomevolution.org/r/26ip | No Gene Identified by Maizesequence.org
bde1 | 8 | bearded-ear1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41343 | L46397 | chr5 | 1 | GRMZM2G160565 | 1 | Good | [NAME] |  | GRMZM2G003514 | Sb04g031750 | PAC:18173988 | Os02g45770 | Bradi3g51800 | http://genomevolution.org/r/26hy | No Gene Identified by Maizesequence.org
dof2 | 8 | DNA binding with one finger2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=56915 | X79934 | chr2 | -1 | GRMZM2G009406 | 2 | Good | http://genomevolution.org/r/25dm |  | GRMZM2G089850 | Sb02g027480 | PAC:18180704 | Os09g29960 | Bradi4g33000 | http://genomevolution.org/r/25dn | No Gene Identified by Maizesequence.org
hm2 | 8 | Helminthosporium carbonum susceptibility2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12328 | AF041047 | chr9 | 1 | GRMZM2G086773 | 1 | Good | http://genomevolution.org/r/25lo |  | chr6:95592074-95763223 | Sb10g025770 | PAC:18197365 | Os06g44180 | no synteny | http://genomevolution.org/r/25lp | No Gene Identified by Maizesequence.org
[NAME] | 8 | cell wall invertase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=113958 | U17695 | chr5 | 1 | GRMZM2G139300 | 1 | Good | http://genomevolution.org/r/25rj |  | chr4:108029805-108599329 | Sb04g021810 | PAC:18170654 | Os02g33110 | Bradi3g44990 | http://genomevolution.org/r/25rk | No Gene Identified by Maizesequence.org
mop1 | 8 | mediator of paramutation1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=133880 | DQ417755 | chr2 | -1 | GRMZM2G042443 | 1 | Can't proof | http://genomevolution.org/r/25hi | GRMZM2G042532 | chr10:123639807-123863085 | Sb06g019330 | PAC:18204806 | Os04g39160 | Bradi5g12760 | http://genomevolution.org/r/26fr | GRMZM2G042443 | Identical Assignment
plt1 | 8 | phospholipid transfer protein homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65601 | J04176 | chr10 | -1 | GRMZM2G101958 | 1 | Good | http://genomevolution.org/r/25nu |  | GRMZM2G010868 | Sb08g002670 | PAC:18201750 | no synteny | too big a gap | http://genomevolution.org/r/2688 | GRMZM2G101958 | Identical Assignment
prh1 | 8 | ser/thr protein phosphatase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30112 | M60215 | chr4 | 1 | GRMZM2G112240 | 2 | Good | http://genomevolution.org/r/25oy |  | GRMZM2G390076 | Sb04g037500 | PAC:18172172 | Os02g57450 | Bradi3g55620 | http://genomevolution.org/r/25oz | GRMZM2G112240 | Identical Assignment
prp1 | 8 | pathogenesis-related protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30225 | [NAME] | chr8 | -1 | AC205274.3_FG001 |  | UTRs unannotated | http://genomevolution.org/r/25bw |  | too big a gap | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/25bx | No Gene Identified by Maizesequence.org
sxd1 | 8 | sucrose export defective1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=60529 | AF302187 | chr5 | 1 | GRMZM2G009785 | 1 | Good | http://genomevolution.org/r/25dq |  | too big a gap | Sb04g010660 | PAC:18171241 | Os02g17650 | Bradi3g10250 | http://genomevolution.org/r/25dr | GRMZM2G009785 | Identical Assignment
[NAME] | 8 | TATA-binding [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40430 | L13302 | chr5 | -1 | GRMZM2G161418 | 2 | Good | http://genomevolution.org/r/25tx |  | GRMZM2G149238 | Sb01g012880 | PAC:18191074 | Os03g45410 | [NAME] | http://genomevolution.org/r/25ty | No Gene Identified by Maizesequence.org
tua4 | 8 | alpha tubulin4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25555 | X73980 | chr5 | -1 | GRMZM2G152466 | 2 | Good | http://genomevolution.org/r/25sh |  | GRMZM2G153292 | Sb01g009560 | PAC:18190271 | Os03g51600 | Bradi1g10150 | http://genomevolution.org/r/25si | No Gene Identified by Maizesequence.org
vp10 | 8 | viviparous10 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30023 | DQ231522 | chr10 | 1 | GRMZM2G067176 | 2 | Good | http://genomevolution.org/r/25je |  | GRMZM2G324669 | Sb06g031680 | PAC:18202644 | Os04g56620 | Bradi5g24930 | http://genomevolution.org/r/25jf | No Gene Identified by Maizesequence.org
[NAME] | 8 | [NAME] mays MADS31 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=59807 | AJ430640 | chr5 | 1 | GRMZM2G071620 | 2 | Good | http://genomevolution.org/r/25jq | GRMZM2G553379 | GRMZM2G087095 | Sb01g007790 | PAC:18191766 | Os03g54160 | Bradi1g08340 | http://genomevolution.org/r/266a | No Gene Identified by Maizesequence.org
bip1 | 7 | Binding protein homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66082 | U58208 | chr5 | -1 | GRMZM2G114793 | 1 | Good | http://genomevolution.org/r/25pa |  | GRMZM2G415007 | Sb04g001140 | [NAME] | Os02g02410 | Bradi3g01480 | http://genomevolution.org/r/25pb | No Gene Identified by Maizesequence.org
bx5 | 7 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40806 | X81830 | chr4 | 1 | GRMZM2G063756 | 1 | Good | http://genomevolution.org/r/25j6 | GRMZM2G167549||GRMZM2G172491||GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 | no synteny | Sb05g026080 | chr5:36758330-37504728 | chr11:25708564-25959495 | chr4:10814041-11469570 | http://genomevolution.org/r/2661 | No Gene Identified by Maizesequence.org
d9 | 7 | dwarf plant9 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12144 | DQ903073 | chr5 | -1 | GRMZM2G024973 | 2 | Good | http://genomevolution.org/r/25fo |  | GRMZM2G144744 | Sb01g010660 | PAC:18190750 | Os03g49990 | Bradi1g11090 | http://genomevolution.org/r/25fp | No Gene Identified by Maizesequence.org
dsc1 | 7 | discolored [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25058 | AF006498 | chr4 |  | chr4:47715993 |  | Not gene model | http://genomevolution.org/r/25cs |  |  |  |  |  |  | http://genomevolution.org/r/25ct | No Gene Identified by Maizesequence.org
dzs18 | 7 | delta [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66567 | U31541 | chr6 | 1 | GRMZM2G100018 | 2 | Good | http://genomevolution.org/r/25nm |  | chr9:45799986-46116362 | Sb10g013050 | PAC:18198383 | no synteny | too big a gap | http://genomevolution.org/r/26gx | No Gene Identified by Maizesequence.org
gdh1 | 7 | glutamic [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12238 | AY106054 | chr1 | -1 | GRMZM2G178415 | 1 | Good | http://genomevolution.org/r/25vj |  | GRMZM2G130542 | Sb01g005370 | PAC:18193575 | Os03g58040 | Bradi1g05680 | http://genomevolution.org/r/26ib | GRMZM2G178415 | Identical Assignment
gln3 | 7 | glutamine synthetase3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61717 | X65930 | chr9 | 1 | GRMZM2G046601 | 2 | Good | http://genomevolution.org/r/25ho | GRMZM5G887009 | GRMZM2G050514 | Sb01g042450 | PAC:18195278 | Os03g12290 | Bradi1g69530 | http://genomevolution.org/r/265a | No Gene Identified by Maizesequence.org
grf1 | 7 | general regulatory factor1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25987 | AY110485 | chr2 | -1 | GRMZM2G102499 | 1 | Good | http://genomevolution.org/r/25o0 |  | GRMZM5G872368 | Sb06g019100 | PAC:18204934 | Os04g38870 | [NAME] | http://genomevolution.org/r/25o1 | GRMZM2G034876 | Different Assignment | http://genomevolution.org/r/26jt | Two independent GenBank records match the gene we identified as grf1 and not the gene identified by maizesequence.org. Our gene is on the correct chromosome according the maizegdb | the maizesequence.org gene is not.
[NAME] | 7 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12343 | U57899 | chr7 | 1 | GRMZM2G042733 | 1 | Good | http://genomevolution.org/r/25hk |  | chr2:160677513-160835765 | Sb02g006390 | PAC:18184572 | Os07g11020 | Bradi1g54070 | http://genomevolution.org/r/26fs | No Gene Identified by Maizesequence.org
[NAME] | 7 | [NAME] a/b binding protein3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12106 | [NAME] | chr8 | -1 | GRMZM2G155216 | 2 | Good | http://genomevolution.org/r/25t1 |  | GRMZM2G402936 | Sb09g028720 | PAC:18169383 | chr5:28058352-28684191 | Bradi2g16290 | http://genomevolution.org/r/26ht | No Gene Identified by Maizesequence.org
ms45 | 7 | male sterile45 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=104485 | AF360356 | chr9 |  | GRMZM2G307906 | 2 | CDS wrong | http://genomevolution.org/r/25w1 |  | GRMZM2G100620 | Sb01g040250 | PAC:18194605 | Os03g15700 | Bradi1g67320 | [NAME] | No Gene Identified by Maizesequence.org
ole1 | 7 | oleosin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65609 | U13701 | chr2 | 1 | GRMZM2G337229 | 1 | Good | http://genomevolution.org/r/25wr |  | too big a gap | Sb06g024350 | PAC:18205041 | Os04g46200 | Bradi5g17470 | http://genomevolution.org/r/25ws | No Gene Identified by Maizesequence.org
psei1 | 7 | cystatin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30122 | AM055630 | chr3 | -1 | GRMZM2G438551 | 1 | Good | http://genomevolution.org/r/25yv | GRMZM5G858738 | GRMZM2G012160 | Sb03g037370 | PAC:18175081 | Os01g58890 | Bradi2g52670 | http://genomevolution.org/r/26dn | No Gene Identified by Maizesequence.org
rtcs1 | 7 | rootless concerning crown and seminal roots1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=114025 | EF051732 | chr1 | -1 | GRMZM2G092542 | 1 | Good | http://genomevolution.org/r/25mu | GRMZM2G092483 | GRMZM2G092483 | Sb01g046990 | PAC:18195454 | Os03g05510 | Bradi1g75110 | http://genomevolution.org/r/25mv | No Gene Identified by Maizesequence.org
rth1 | 7 | roothair [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=60513 | AY265854 | chr1 | 1 | GRMZM2G099056 | 1 | Good | http://genomevolution.org/r/25ni |  | chr5:17177936-18066810 | Sb01g014290 | PAC:18195388 | Os03g42750 | Bradi1g14450 | http://genomevolution.org/r/25nj | No Gene Identified by Maizesequence.org
sod9 | 7 | superoxide [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=56998 | X17564 | chr9 | -1 | GRMZM2G058522 | 2 | Good | http://genomevolution.org/r/25iq |  | GRMZM2G169890 | Sb01g035350 | PAC:18195462 | Os03g22810 | chr1:61573209-62431857 | http://genomevolution.org/r/26g1 | No Gene Identified by Maizesequence.org
tha1 | 7 | thylakoid assembly1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=26005 | U71123 | chr3 |  | chr3:58008644 |  | No gene model | http://genomevolution.org/r/25cq |  |  |  |  |  |  | http://genomevolution.org/r/25cr | No Gene Identified by Maizesequence.org
tlk1 | 7 | tousled-like protein [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64598 | AY644701 | chr1 | -1 | GRMZM2G016671 | 1 | Good | http://genomevolution.org/r/25es |  | GRMZM2G172132 | Sb01g008020 | PAC:18191278 | Os03g53880 | Bradi1g08540 | http://genomevolution.org/r/25et | No Gene Identified by Maizesequence.org
tub2 | 7 | beta tubulin2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=24944 | X52879 | chr8 | -1 | GRMZM2G334899 | 2 | Good | http://genomevolution.org/r/25wn |  | chr6:146975550-147183781 | Sb09g020360 | PAC:18170502 | Os05g34170 | Bradi2g25370 | http://genomevolution.org/r/26ig | No Gene Identified by Maizesequence.org
tub4 | 7 | beta tubulin4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=56925 | [NAME] | chr5 | -1 | [NAME] | 2 | Good | http://genomevolution.org/r/25jc |  | [NAME] | Sb01g012740 | PAC:18191607 | Os03g45920 | Bradi1g13090 | http://genomevolution.org/r/25jd | No Gene Identified by Maizesequence.org
arpp2a | 6 | acidic ribosomal protein P2a |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82408 | X86553 | chr8 | 1 | GRMZM2G119809 | 2 | Good | http://genomevolution.org/r/25q0 | GRMZM2G102891||GRMZM2G105712 | too big a gap | Sb09g029390 | chr9:28549175-29341996 | chr5:28584191-29087363 | chr2:13738715-13934375 | http://genomevolution.org/r/269b | No Gene Identified by Maizesequence.org
bx2 | 6 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40807 | X81831 | chr4 | 1 | GRMZM2G085661 | 1 | Good | http://genomevolution.org/r/25li |  | chr2:229933265-230991271 | Sb05g026080 | chr5:36473532-37504728 | Os11g41710 | chr4:10814041-11688511 | http://genomevolution.org/r/2674 | No Gene Identified by Maizesequence.org
bx3 | 6 | benzoxazinone synthesis3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40805 | [NAME] | chr4 | -1 | GRMZM2G167549 | 1 | Good | http://genomevolution.org/r/25uf | GRMZM2G172491||GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 | chr2:229933265-230991271 | Sb05g026065 | chr5:36758330-37504728 | chr11:25708564-25959495 | chr4:10814041-11469570 | http://genomevolution.org/r/26bh | No Gene Identified by Maizesequence.org
elfa1 | 6 | elongation factor [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=62148 | M95072 | chr6 | -1 | AC233866.1_FG006 | 1 | Can't proof | http://genomevolution.org/r/25ca | GRMZM5G859846||GRMZM5G896006 | no synteny | too big a gap | too big a gap | chr5:16888752-17955366 | chr2:26261030-27198490 | [NAME] | No Gene Identified by Maizesequence.org
fgs1 | 6 | ferredoxin-dependent glutamate synthase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65574 | M59190 | chr7 | -1 | GRMZM2G036609 | 1 | Good | http://genomevolution.org/r/25h2 |  | chr2:214961586-215069376 | Sb02g041740 | PAC:18181877 | Os07g46460 | Bradi1g19080 | http://genomevolution.org/r/26fo | GRMZM2G036609 | Identical Assignment
fie2 | 6 | fertilization independent [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=754920 | AY061965 | chr10 | -1 | GRMZM2G148924 | 1 | Good | http://genomevolution.org/r/25s9 |  | GRMZM2G118205 | Sb07g002820 | PAC:18187686 | Os08g04290 | Bradi3g14510 | http://genomevolution.org/r/25sa | GRMZM2G148924 | Identical Assignment
grp1 | 6 | glycine-rich protein1 |  | [NAME] | X61121 | chr1 | -1 | GRMZM2G080603 | 1 | Good | [NAME] | GRMZM5G836166 | no synteny | too big a gap | no synteny | no synteny | no synteny | http://genomevolution.org/r/25kn | No Gene Identified by Maizesequence.org
hyp1 | 6 | hybrid proline-rich protein1 |  | [NAME] | X60432 | chr9 | 1 | GRMZM2G304378 | 1 | Good | http://genomevolution.org/r/25vv | GRMZM2G304385 | too big a gap | Sb10g004790 | chr10:4284199-4850277 | Os06g07220 | Bradi1g48160 | http://genomevolution.org/r/26ie | GRMZM2G304378 | Identical Assignment
lhcb2 | 6 | [NAME] a/b binding [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25702 | X14794 | chr7 | -1 | AC207722.2_FG009 | 1 | Good | http://genomevolution.org/r/25c2 | GRMZM2G353753 | chr2:197477178-197648432 | Sb02g032040 | PAC:18183417 | no synteny | Bradi4g37210 | http://genomevolution.org/r/26ey | No Gene Identified by Maizesequence.org
lox3 | 6 | lipoxygenase3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1160713 | AF465643 | chr1 | 1 | GRMZM2G109130 | 1 | Good | http://genomevolution.org/r/25oi |  | GRMZM2G102760 | Sb01g011040 | PAC:18195057 | Os03g49260 | Bradi1g11680 | http://genomevolution.org/r/268k | No Gene Identified by Maizesequence.org
mha2 | 6 | plasma-membrane H+ATPase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=104276 | X85805 | chr2 | -1 | GRMZM2G019404 | 1 | Good | http://genomevolution.org/r/25fe | GRMZM2G314079 | GRMZM2G314079 | Sb06g031240 | PAC:18204901 | Os04g56160 | Bradi5g24690 | http://genomevolution.org/r/25ff | GRMZM2G019404 | Identical Assignment
mlg3 | 6 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=78911 | U05226 | chr6 | 1 | [NAME] | 1 | Good | http://genomevolution.org/r/25n2 |  | chr8:62956186-63192617 | Sb09g027110 | PAC:18168121 | [NAME] | Bradi2g18100 | http://genomevolution.org/r/25n3 | No Gene Identified by Maizesequence.org
mrp1 | 6 | [NAME] related protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=175392 | AJ318518 | chr8 | -1 | GRMZM2G111306 | 2 | Good | http://genomevolution.org/r/25oq |  | GRMZM2G030403 | too big a gap | no synteny | chr5:1836622-2596437 | too big a gap | http://genomevolution.org/r/26h5 | No Gene Identified by Maizesequence.org
nac1 | 6 | [NAME] stress protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64622 | T14760 | chr10 | -1 | GRMZM2G015605 | 1 | Good | http://genomevolution.org/r/25em |  | chr8:129242079-129392484 | Sb09g003060 | PAC:18169177 | Os05g04700 | Bradi2g36770 | http://genomevolution.org/r/26fb | No Gene Identified by Maizesequence.org
sal1 | 6 | supernumerary [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=886495 | AY243475 | chr9 | -1 | GRMZM2G117935 | 1 | Good | http://genomevolution.org/r/25pq |  | GRMZM2G701024 | Sb10g025200 | PAC:18196712 | Os06g43590 | too big a gap | http://genomevolution.org/r/26ha | GRMZM2G117935 | Identical Assignment
stc1 | 6 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=484833 | AF296122 | chr9 | 1 | GRMZM2G177098 | 1 | Good | http://genomevolution.org/r/25vf | GRMZM2G177211 | GRMZM2G030583 | Sb10g006160 | PAC:18198687 | chr6:4114082-4703565 | Bradi1g46840 | http://genomevolution.org/r/26i9 | No Gene Identified by Maizesequence.org
tua5 | 6 | alpha tubulin5 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25557 | X63177 | chr2 | 1 | GRMZM2G099167 | 2 | Good | http://genomevolution.org/r/25nk | [NAME] | [NAME] | Sb02g037260 | PAC:18181282 | Os07g38730 | Bradi1g23770 | http://genomevolution.org/r/26gw | GRMZM2G099167 | Identical Assignment
tua6 | 6 | alpha tubulin6 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25559 | X63178 | chr7 | 1 | GRMZM2G083243 | 1 | Good | http://genomevolution.org/r/25ky | GRMZM2G083590 | [NAME] | Sb02g037260 | PAC:18181282 | Os07g38730 | Bradi1g23770 | http://genomevolution.org/r/26gd | GRMZM2G083243 | Identical Assignment
tub6 | 6 | beta tubulin6 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018109 | L10633 | chr3 | -1 | GRMZM2G071790 | 1 | Good | http://genomevolution.org/r/25ju | GRMZM5G857152 | GRMZM2G172932 | Sb03g037490 | PAC:18176615 | Os01g59150 | Bradi2g52790 | http://genomevolution.org/r/25jv | No Gene Identified by Maizesequence.org
zfl2 | 6 | Zea floricaula leafy2 |  | [NAME] | AY179881 | chr2 | -1 | GRMZM2G180190 | 1 | Good | http://genomevolution.org/r/25vp |  | GRMZM2G098813 | Sb06g027340 | PAC:18205732 | [NAME] | Bradi5g20340 | http://genomevolution.org/r/25vq | No Gene Identified by Maizesequence.org
akh2 | 5 | aspartate kinase homoserine [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66611 | [NAME] | chr2 | -1 | GRMZM2G104546 | 2 | Good | http://genomevolution.org/r/25o6 |  | GRMZM2G136712 | Sb02g019450 | PAC:18180944 | no synteny | Bradi4g27450 | http://genomevolution.org/r/25o7 | No Gene Identified by Maizesequence.org
ant2 | 5 | adenine nucleotide [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12051 | X15712 | chr4 | 1 | GRMZM2G135186 | 2 | Good | http://genomevolution.org/r/25r2 |  | GRMZM5G837108 | Sb04g029750 | PAC:18173089 | Os02g48720 | chr3:56201835-56506183 | http://genomevolution.org/r/25r3 | No Gene Identified by Maizesequence.org
atp1 | 5 | ATPase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=24867 | M95063 | chr3 | 1 | GRMZM2G101020 | 2 | Good | http://genomevolution.org/r/25no |  | GRMZM2G028432 | Sb08g004390 | [NAME] | Os12g07140 | Bradi4g41560 | http://genomevolution.org/r/26gy | No Gene Identified by Maizesequence.org
bx4 | 5 | benzoxazinone synthesis4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=114044 | X81827 | chr4 | -1 | GRMZM2G172491 | 1 | Good | http://genomevolution.org/r/25v5 | GRMZM2G473480||GRMZM5G855537||GRMZM5G899181 | no synteny | Sb05g026065 | chr5:36758330-37504728 | chr11:25708564-25959495 | chr4:10814041-11469570 | http://genomevolution.org/r/26bu | No Gene Identified by Maizesequence.org
caf2 | 5 | crs2 associated [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=886551 | AY264369 | chr3 | 1 | AC199526.5_FG003 | 1 | Good | http://genomevolution.org/r/25bs |  | chr8:38441683-39174736 | Sb03g013160 | too big a gap | Os01g21990 | Bradi2g12140 | http://genomevolution.org/r/262j | No Gene Identified by Maizesequence.org
ccp2 | 5 | cysteine [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=112838 | [NAME] | chr7 | 1 | GRMZM2G038636 | 1 | Good | http://genomevolution.org/r/25h6 |  | GRMZM5G820822 | Sb02g025920 | PAC:18181690 | Os09g27030 | Bradi4g31440 | http://genomevolution.org/r/26fp | No Gene Identified by Maizesequence.org
crs2 | 5 | chloroplast RNA splicing2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=106358 | AF225708 | chr8 | 1 | GRMZM2G132021 | 2 | Good | http://genomevolution.org/r/25qu |  | GRMZM2G060887 | Sb03g007130 | PAC:18178350 | Os01g04130 | Bradi2g02200 | http://genomevolution.org/r/26hg | No Gene Identified by Maizesequence.org
cyc1 | 5 | cyclin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=86023 | U10078 | chr8 | -1 | GRMZM2G034647 | 2 | Good | [NAME] | GRMZM5G804421 | chr6:155582978-155687006 | Sb09g024180 | PAC:18168868 | Os05g41390 | Bradi2g21330 | http://genomevolution.org/r/26fm | GRMZM2G034647 | Identical Assignment
cyc4b | 5 | cyclin4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=86025 | U10079 | chr8 | 1 | GRMZM2G310115 | 2 | Good | http://genomevolution.org/r/25w3 |  | GRMZM2G072853 | Sb03g037470 | PAC:18179550 | Os01g59130 | [NAME] | http://genomevolution.org/r/25w4 | No Gene Identified by Maizesequence.org
fer2 | 5 | ferritin homolog2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25286 | X61392 |  |  | GRMZM2G147266 | 1 | CDS wrong|real gene is annotated as only 3' UTR | http://genomevolution.org/r/25s7 | GRMZM2G066165||GRMZM5G854762 | no synteny | too big a gap | no synteny | no synteny | Bradi4g44860 | http://genomevolution.org/r/26ae | No Gene Identified by Maizesequence.org
fht1 | 5 | flavanone 3-hydroxylase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=77928 | U04434 | chr2 | 1 | GRMZM2G062396 | 1 | Good | http://genomevolution.org/r/25j2 |  | chr10:146892300-147019887 | Sb06g031790 | PAC:18204417 | Os04g56700 | Bradi5g25050 | http://genomevolution.org/r/26g2 | No Gene Identified by Maizesequence.org
fie1 | 5 | fertilization independent endosperm1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=754919 | AY061964 | chr4 | -1 | GRMZM2G118205 | 2 | Good | http://genomevolution.org/r/25ps |  | GRMZM2G148924 | Sb07g002820 | PAC:18187686 | Os08g04290 | Bradi3g14510 | http://genomevolution.org/r/25pt | No Gene Identified by Maizesequence.org
fps1 | 5 | farnesyl pyrophosphate synthase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=99300 | AF330036 | chr8 | -1 | GRMZM2G168681 | 2 | Good | http://genomevolution.org/r/25un |  | GRMZM2G079836 | Sb09g027190 | PAC:18168897 | Os05g46580 | [NAME] | http://genomevolution.org/r/25uo | No Gene Identified by Maizesequence.org
gsr1 | 5 | glutathione reductase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=57211 | T12723 | chr1 | 1 | GRMZM2G172322 | 1 | Good | http://genomevolution.org/r/25v3 |  | chr9:153144213-153318012 | Sb01g046260 | PAC:18191253 | Os03g06740 | Bradi1g74180 | http://genomevolution.org/r/25v4 | No Gene Identified by Maizesequence.org
[NAME] | 5 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=113960 | S78780 | chr7 | 1 | GRMZM2G138727 | 1 | Good|identical to 27-kDa [NAME] | http://genomevolution.org/r/25rg | GRMZM2G438538 | GRMZM2G060429 | Sb02g025510 | PAC:18180925 | chr9:15882395-16462627 | chr4:36700872-37221819 | http://genomevolution.org/r/26hk | No Gene Identified by Maizesequence.org
hsp1 | 5 | heat shock protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25207 | X03697 | chr8 | -1 | GRMZM2G310431 | 2 | Good | http://genomevolution.org/r/25w5 |  | AC209784.3_FG007 | Sb03g039360 | PAC:18175196 | Os01g62290 | Bradi2g54570 | http://genomevolution.org/r/25w6 | No Gene Identified by Maizesequence.org
les22 | 5 | lesion22 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=223331 | AF058763 | chr1 | 1 | GRMZM2G044074 | 1 | Good | http://genomevolution.org/r/25hm |  | [NAME] | Sb01g036030 | PAC:18193031 | Os03g22060 | Bradi1g63090 | http://genomevolution.org/r/26ft | GRMZM2G044074 | Identical Assignment
lop1 | 5 | lo1 pI allergen homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40145 | AY197352 | chr9 | -1 | GRMZM2G072886 | 2 | Good | http://genomevolution.org/r/25jy |  | GRMZM2G177391 | Sb01g029880 | PAC:18191409 | Os10g40090 | Bradi3g32810 | http://genomevolution.org/r/25jz | No Gene Identified by Maizesequence.org
mha1 | 5 | membrane H(+)-ATPase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=78901 | U08985 | chr7 | -1 | GRMZM2G104325 | 1 | Good | http://genomevolution.org/r/25o4 |  | GRMZM2G144821 | [NAME] | PAC:18183066 | Os07g09340 | Bradi1g54850 | http://genomevolution.org/r/25o5 | No Gene Identified by Maizesequence.org
ndk1 | 5 | nucleotide diphosphate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82035 | T18831 | chr7 | -1 | GRMZM2G134797 | 1 | Can't proof | http://genomevolution.org/r/25r0 |  | chr2:200684613-200794829 | Sb02g033710 | PAC:18182509 | Os07g30970 | Bradi1g27120 | http://genomevolution.org/r/26hi | No Gene Identified by Maizesequence.org
pip1b | 5 | plasma membrane intrinsic protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=319246 | AF131201 | chr5 | 1 | AC209208.3_FG002 | 1 | maizesequence.org skips 3' UTR | http://genomevolution.org/r/25c4 |  | GRMZM2G392975 | Sb04g032430 | PAC:18170819 | Os02g44630 | Bradi3g51390 | http://genomevolution.org/r/25c5 | AC209208.3_FG002 | Identical Assignment
pip2a | 5 | [NAME] intrinsic [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=319249 | AF130975 | chr2 | -1 | GRMZM2G178693 | 1 | Good | http://genomevolution.org/r/25vl |  | chr10:130910211-131094948 | Sb06g023240 | PAC:18204775 | Os04g44570 | Bradi5g16370 | http://genomevolution.org/r/26c1 | No Gene Identified by Maizesequence.org
plt2 | 5 | phospholipid transfer protein homolog2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=120441 | U66105 | chr3 | -1 | GRMZM2G010868 | 2 | Good | http://genomevolution.org/r/25du |  | GRMZM5G898444 | Sb08g002670 | PAC:18201392 | Os11g02424 | too big a gap | http://genomevolution.org/r/25dv | No Gene Identified by Maizesequence.org
ppp1 | 5 | pyrophosphate-energized proton pump1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64563 | T18800 | chr5 | -1 | GRMZM2G090718 | 1 | 3' end half of gene sequence missing | http://genomevolution.org/r/25mg |  | chr4:178194539-178436867 | Sb04g034340 | PAC:18171145 | Os02g52940 | Bradi3g57820 | http://genomevolution.org/r/26go | No Gene Identified by Maizesequence.org
psei2 | 5 | cystatin2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=111927 | D63342 | chr8 | -1 | GRMZM2G012160 | 2 | Good | http://genomevolution.org/r/25e2 |  | GRMZM5G858738 | Sb03g037370 | PAC:18175081 | Os01g58890 | Bradi2g52670 | http://genomevolution.org/r/25e3 | GRMZM2G012160 | Identical Assignment
[NAME] | 5 | protein [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30143 | X52384 | chr6 | 1 | GRMZM2G328785 | 1 | Good | http://genomevolution.org/r/25wj | GRMZM2G328772 | chr8:110326401-110528523 | Sb09g008070 | no synteny | no synteny | no synteny | http://genomevolution.org/r/25wk | GRMZM2G328785 | Identical Assignment
[NAME] | 5 | roothair [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=60515 | AY265855 | chr1 | 1 | GRMZM2G377215 | 1 | Good | http://genomevolution.org/r/25xn |  | GRMZM2G006830 | Sb01g037850 | PAC:18192604 | Os03g18910 | Bradi1g64820 | http://genomevolution.org/r/25xo | GRMZM2G377215 | Identical Assignment
sam2 | 5 | S-adenosyl methionine decarboxylase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=248576 | [NAME] | chr2 | -1 | GRMZM2G154397 | 1 | Can't proof | http://genomevolution.org/r/25sr |  | GRMZM2G125635 | Sb06g021540 | PAC:18202898 | Os04g42090 | Bradi5g14640 | http://genomevolution.org/r/25ss | GRMZM2G154397 | Identical Assignment
stk1 | 5 | serine threonine [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=954142 | EF523347 | chr9 | 1 | GRMZM2G165433 | 1 | Good | http://genomevolution.org/r/25u9 | GRMZM2G465296 | chr6:107102688-107370412 | Sb10g006130 | PAC:18197068 | Os06g09230 | Bradi1g46860 | http://genomevolution.org/r/26i3 | GRMZM2G165433 | Identical Assignment
tub3 | 5 | beta tubulin3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=56923 | X74654 | chr1 | -1 | [NAME] | 1 | Good | http://genomevolution.org/r/25og |  | [NAME] | Sb01g012740 | PAC:18191607 | Os03g45920 | Bradi1g13090 | http://genomevolution.org/r/25oh | No Gene Identified by Maizesequence.org
vp14 | 5 | viviparous14 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=97589 | U95953 | chr1 | -1 | GRMZM2G014392 | 1 | Good | http://genomevolution.org/r/25ea |  | GRMZM5G838285 | Sb01g013520 | PAC:18193097 | Os03g44380 | Bradi1g13760 | http://genomevolution.org/r/26f9 | No Gene Identified by Maizesequence.org
wc1 | 5 | white cap1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12747 | DQ100346 | chr9 | -1 | GRMZM2G057243 | 2 | Good | http://genomevolution.org/r/25ig |  | GRMZM2G070933 | Sb01g047540 | chr1:52476487-53490628 | too big a gap | chr1:71575893-72588253 | http://genomevolution.org/r/26fz | GRMZM2G057243 | Identical Assignment
zag5 | 5 | zea agamous5 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41346 | L46398 | chr4 | 1 | GRMZM2G003514 | 2 | Good | http://genomevolution.org/r/25d2 |  | GRMZM2G160565 | Sb04g031750 | PAC:18173988 | Os02g45770 | Bradi3g51800 | http://genomevolution.org/r/25d3 | No Gene Identified by Maizesequence.org
zmm7 | 5 | [NAME] mays MADS7 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=104403 | [NAME] | chr2 | 1 | GRMZM2G129034 | 2 | Good | http://genomevolution.org/r/25qm |  | GRMZM2G097059 | Sb02g029310 | PAC:18180686 | Os09g32948 | Bradi4g34680 | http://genomevolution.org/r/25qn | No Gene Identified by Maizesequence.org
[NAME] | 5 | [NAME] mays MADS8 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=112354 | Y09303 | chr9 | 1 | GRMZM2G102161 | 2 | Good | http://genomevolution.org/r/25nw |  | GRMZM2G099522 | Sb01g042840 | PAC:18195007 | Os03g11614 | Bradi1g69890 | http://genomevolution.org/r/25nx | GRMZM2G102161 | Identical Assignment
abp4 | 4 | auxin binding protein [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65339 | L08426 | chr10 | -1 | GRMZM2G064371 | 1 | Good | http://genomevolution.org/r/25ja | GRMZM2G078508 | no synteny | Sb08g016760 | PAC:18189661 | Os12g34450 | Bradi4g06030 | http://genomevolution.org/r/2663 | GRMZM2G064371 | Identical Assignment
arpp1a | 4 | acidic ribosomal protein P1a |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018892 | [NAME] | chr6 | 1 | GRMZM2G032315 | 1 | Good | http://genomevolution.org/r/25gi |  | GRMZM2G157443 | Sb07g001570 | PAC:18185470 | Os08g02340 | Bradi3g13750 | http://genomevolution.org/r/25gj | GRMZM2G032315 | Identical Assignment
[NAME] | 4 | basal endosperm transfer [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=109818 | AJ133530 | chr3 | 1 | GRMZM2G175976 | 2 | Good | http://genomevolution.org/r/25vd |  | no synteny | too big a gap | no synteny | no synteny | no synteny | http://genomevolution.org/r/25ve | No Gene Identified by Maizesequence.org
[NAME] | 4 | calmodulin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=61658 | X74490 | chr6 | -1 | GRMZM2G117582 | 1 | Good | http://genomevolution.org/r/25pk |  | GRMZM5G895362 | Sb09g024030 | PAC:18168223 | Os05g41270 | Bradi2g21460 | [NAME] | No Gene Identified by Maizesequence.org
cap1 | 4 | calcium pump1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=112965 | AF096871 | chr8 | 1 | GRMZM2G056014 | 2 | Good | http://genomevolution.org/r/25ia |  | too big a gap | Sb09g001850 | too big a gap | Os05g02940 | too big a gap | [NAME] | No Gene Identified by Maizesequence.org
ccp1 | 4 | cysteine protease1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=99058 | D45402 | chr5 | 1 | GRMZM2G098298 | 1 | Good | http://genomevolution.org/r/25na |  | no synteny | too big a gap | too big a gap | too big a gap | too big a gap | http://genomevolution.org/r/25nb | GRMZM2G098298 | Identical Assignment
cf1 | 4 | camouflage1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9017732 | BT042702 | chr5 | 1 | GRMZM2G026117 | 1 | Good | [NAME] |  | GRMZM2G041159 | Sb04g004630 | PAC:18171710 | Os02g07230 | Bradi3g05160 | http://genomevolution.org/r/25g1 | No Gene Identified by Maizesequence.org
chn2 | 4 | chitinase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25133 | L00973 |  | -1 | GRMZM2G145461 | 2 | Good | http://genomevolution.org/r/25rz | GRMZM2G145518||GRMZM2G447967 | GRMZM2G145518 | chr10:59525238-60462013 | PAC:18196692 | Os06g51050 | too big a gap | http://genomevolution.org/r/26aa | No Gene Identified by Maizesequence.org
cka1 | 4 | CK2 protein kinase alpha 1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=941059 | X61387 | chr2 | -1 | GRMZM2G143602 | 2 | Good | http://genomevolution.org/r/25rr |  | GRMZM5G845755 | Sb02g001110 | PAC:18182960 | Os07g02350 | Bradi1g59010 | http://genomevolution.org/r/25rs | No Gene Identified by Maizesequence.org
cka2 | 4 | CK2 protein kinase alpha 2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=952192 | Y11526 | chr1 | -1 | GRMZM2G047855 | 1 | Good | http://genomevolution.org/r/25hu |  | GRMZM2G141903 | Sb01g007270 | PAC:18191037 | Os03g55389 | Bradi1g07810 | http://genomevolution.org/r/26fu | No Gene Identified by Maizesequence.org
cpn1 | 4 | chaperonin 1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65668 | L21007 | chr5 |  | GRMZM2G458208-GRMZM2G111477 | 2 | Gene split by maizesequence.org | http://genomevolution.org/r/25zb |  | no synteny | Sb01g020010 | PAC:18191225 | Os10g32550 | Bradi3g28070 | http://genomevolution.org/r/25zc | No Gene Identified by Maizesequence.org
crs1 | 4 | chloroplast RNA splicing1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=106357 | AY109620 | chr1 | -1 | GRMZM2G078412 | 1 | Good | [NAME] |  | chr4:23681994-24163075 | no synteny | PAC:18186042 | Os08g27150 | too big a gap | http://genomevolution.org/r/26g8 | GRMZM2G078412 | Identical Assignment
cta1 | 4 | chitinase A1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25946 | M84164 | chr2 | 1 | GRMZM2G051943 | 1 | Good | http://genomevolution.org/r/25i2 | GRMZM2G051921||GRMZM2G052175||GRMZM2G122708 | GRMZM2G051921 | Sb06g021230 | PAC:18204845 | Os04g41680 | Bradi5g14430 | http://genomevolution.org/r/265h | No Gene Identified by Maizesequence.org
cyc2 | 4 | cyclin2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=86021 | U10077 | chr3 |  | chr3:41183262 |  | No gene model | http://genomevolution.org/r/25co |  |  |  |  |  |  | http://genomevolution.org/r/25cp | No Gene Identified by Maizesequence.org
cyc3 | 4 | cyclin3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=86019 | U10076 | chr6 | -1 | GRMZM2G073671 | 2 | Good | http://genomevolution.org/r/25k2 |  | chr5:63277604-63426448 | Sb10g030790 | PAC:18197914 | Os06g51110 | too big a gap | http://genomevolution.org/r/26g5 | No Gene Identified by Maizesequence.org
cyp1 | 4 | cytochrome P450 homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=57310 | T12664 | chr3 | 1 | GRMZM5G899349 | 2 | Can't proof | http://genomevolution.org/r/2612 |  | GRMZM2G068465 | Sb08g002250 | no synteny | no synteny | too big a gap | [NAME] | No Gene Identified by Maizesequence.org
[NAME] | 4 | delayed flowering1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=60468 | EF093789 | chr7 | 7 | GRMZM2G067921 |  | Good | [NAME] | GRMZM5G858064 | no synteny | no synteny | PAC:18182388 | Os09g36910 | no synteny | [NAME] | No Gene Identified by Maizesequence.org
eif5 | 4 | eucaryotic translation initiation factor5 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=136230 | X99517 | chr4 | -1 | GRMZM2G165917 | 2 | Good | http://genomevolution.org/r/25ud | GRMZM5G899228 | chr5:80142163-80247586 | Sb04g003550 | PAC:18174414 | too big a gap | Bradi3g03850 | http://genomevolution.org/r/25ue | GRMZM2G165917 | Identical Assignment
eif5a | 4 | elongation initiation factor5A |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=105534 | H35879 | chr2 | -1 | GRMZM2G113696 | 2 | Can't proof | http://genomevolution.org/r/25p6 |  | GRMZM2G144030 | Sb02g038290 | PAC:18184870 | Os07g40580 | Bradi1g22670 | http://genomevolution.org/r/25p7 | No Gene Identified by Maizesequence.org
elm1 | 4 | elongated mesocotyl1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=953886 | AY560384 | chr8 | 1 | GRMZM5G861678 | 2 | Good | http://genomevolution.org/r/260o |  | chr3:149389218-149602729 | Sb03g045760 | PAC:18180338 | Os01g72090 | Bradi2g60670 | [NAME] | GRMZM5G861678 | Identical Assignment
fdx3 | 4 | ferredoxin3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=40773 | AB001387 | chr1 | 1 | GRMZM2G053458 | 1 | Good | http://genomevolution.org/r/25i6 |  | chr5:1534698-1660013 | Sb01g002180 | PAC:18194249 | Os03g61960 | Bradi1g02590 | http://genomevolution.org/r/26fx | GRMZM2G053458 | Identical Assignment
grp3 | 4 | glycine-rich protein3 |  | [NAME] | Y07781 | chr5 | 1 | GRMZM2G154954 | 2 | Good | http://genomevolution.org/r/25sz |  | GRMZM2G067315 | too big a gap | PAC:18195983 | too big a gap | [NAME] | http://genomevolution.org/r/25t0 | GRMZM2G154954 | Identical Assignment
hsp70-4 | 4 | heat shock protein70-4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=78932 | X78414 | chr3 | -1 | GRMZM2G340251 | 2 | Good | http://genomevolution.org/r/25wz | GRMZM5G817178 | GRMZM2G056039 | Sb08g018750 | too big a gap | Os12g38180 | Bradi4g04220 | http://genomevolution.org/r/25x0 | No Gene Identified by Maizesequence.org
[NAME] | 4 | initiator-binding [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=77925 | [NAME] | chr1 | 1 | GRMZM2G110309 | 1 | Good | http://genomevolution.org/r/25oo |  | GRMZM2G063151 | Sb01g039650 | PAC:18194473 | Os03g16700 | Bradi1g66680 | http://genomevolution.org/r/25op | No Gene Identified by Maizesequence.org
isr1 | 4 | inhibitor of [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12346 | AF296824 | chr10 | -1 | GRMZM5G803874 | 2 | Good | http://genomevolution.org/r/25zr |  | chr2:18369638-18561987 | Sb06g025010 | PAC:18203058 | Os04g47020 | Bradi5g18060 | http://genomevolution.org/r/25zs | No Gene Identified by Maizesequence.org
lhcb7 | 4 | [NAME] complex mesophyll7 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25857 | [NAME] | chr6 | 1 | GRMZM2G402936 | 1 | Good | http://genomevolution.org/r/25y7 |  | GRMZM2G155216 | Sb09g028720 | PAC:18169383 | chr5:28081764-28748003 | Bradi2g16290 | http://genomevolution.org/r/26iq | No Gene Identified by Maizesequence.org
[NAME] | 4 | [NAME] binding [NAME] |  | [NAME] | X68682 | chr1 |  | GRMZM2G018627 | 1 | Good|near identical paralog: GRMZM2G414192 | http://genomevolution.org/r/25f8 | GRMZM2G321320||GRMZM2G414192||GRMZM2G414195 | GRMZM2G414192 | Sb01g015400 | PAC:18194789 | Os03g39610 | Bradi1g15290 | http://genomevolution.org/r/2645 | No Gene Identified by Maizesequence.org
lkrsdh1 | 4 | lysine-ketoglutarate reductase/saccharopine dehydrogenase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=315260 | AF271636 | chr4 | -1 | GRMZM2G181362 | 2 | Good | http://genomevolution.org/r/25vt |  | GRMZM2G110324 | Sb04g035220 | PAC:18172910 | Os02g54254 | too big a gap | http://genomevolution.org/r/25vu | No Gene Identified by Maizesequence.org
[NAME] | 4 | lipoxygenase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64911 | DQ335760 | chr3 | 1 | GRMZM2G156861 | 1 | Two tandem duplicates merged into one gene by maizesequence.org? | http://genomevolution.org/r/25tf | [NAME] | [NAME] | Sb03g042440 | PAC:18178280 | chr1:38780116-39263267 | chr2:55371971-55698467 | http://genomevolution.org/r/26hu | No Gene Identified by Maizesequence.org
mbf1 | 4 | multi-protein bridging factor homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=112655 | [NAME] | chr4 | -1 | [NAME] | 2 | Good | http://genomevolution.org/r/25nq |  | GRMZM5G800112 | Sb07g014940 | PAC:18185874 | no synteny | no synteny | http://genomevolution.org/r/25nr | No Gene Identified by Maizesequence.org
mta1 | 4 | ribosomal protein |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64627 | T14712 | chr1 | 1 | GRMZM2G090422 | 1 | Can't proof | http://genomevolution.org/r/25mc |  | GRMZM2G072315 | Sb01g007690 | PAC:18194203 | Os03g54860 | Bradi1g08260 | http://genomevolution.org/r/25md | No Gene Identified by Maizesequence.org
nbp1 | 4 | nucleic acid binding protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25813 | M74566 | chr7 | 1 | GRMZM2G011129 | 1 | Good | http://genomevolution.org/r/25dw |  | chr2:166294756-166398296 | Sb02g011330 | PAC:18184218 | no synteny | Bradi4g38260 | http://genomevolution.org/r/25dx | GRMZM2G011129 | Identical Assignment
ocl4 | 4 | outer cell layer4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=314447 | AJ250986 | chr1 | -1 | GRMZM2G123140 | 1 | Good | http://genomevolution.org/r/25qa | GRMZM5G875327 | no synteny | Sb01g028160 | PAC:18193087 | Os10g42490 | Bradi3g34410 | http://genomevolution.org/r/26hc | No Gene Identified by Maizesequence.org
ohp1 | 4 | opaque2 heterodimerizing protein1 |  | [NAME] | L00623 | chr1 | -1 | GRMZM2G016150 | 1 | Good | http://genomevolution.org/r/25eo | GRMZM2G019446 | GRMZM2G019446 | Sb01g005170 | PAC:18191498 | Os03g58250 | Bradi1g05480 | http://genomevolution.org/r/25ep | No Gene Identified by Maizesequence.org
ohp2 | 4 | opaque2 heterodimerizing [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30200 | [NAME] | chr5 | 1 | GRMZM2G007063 | 2 | Good | http://genomevolution.org/r/25dg |  | GRMZM2G019446 | Sb01g005170 | PAC:18183040 | Os03g58250 | Bradi1g05480 | http://genomevolution.org/r/25dh | GRMZM2G007063 | Identical Assignment
pgl2 | 4 | polygalacturonase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=47536 | X57628 | chr6 | -1 | GRMZM2G320175 | 2 | Good | http://genomevolution.org/r/25wb | GRMZM2G058033||GRMZM2G153666||GRMZM2G160526||GRMZM2G160626||GRMZM2G162384||GRMZM2G306693||GRMZM5G880653 | no synteny | Sb10g024010 | too big a gap | Os06g40890 | Bradi1g36100 | http://genomevolution.org/r/26ce | No Gene Identified by Maizesequence.org
pip1c | 4 | plasma membrane intrinsic protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403337 | AF326487 | chr4 | 1 | GRMZM2G392975 | 2 | Good | http://genomevolution.org/r/25xv |  | AC209208.3_FG002 | Sb04g032430 | PAC:18170819 | Os02g44630 | Bradi3g51390 | http://genomevolution.org/r/25xw | No Gene Identified by Maizesequence.org
ppr5 | 4 | pentatricopeptide repeat 5 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1232899 | EU037901 | chr4 | -1 | GRMZM2G025409 | 2 | Good | http://genomevolution.org/r/25fw |  | GRMZM2G313326 | Sb04g027800 | PAC:18174466 | [NAME] | Bradi3g59120 | http://genomevolution.org/r/25fx | No Gene Identified by Maizesequence.org
prc1 | 4 | proteasome C9 1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64585 | T14766 | chr6 | -1 | GRMZM2G120047 | 2 | Can't proof | http://genomevolution.org/r/25q2 |  | GRMZM2G005080 | Sb10g004740 | too big a gap | Os06g07140 | Bradi1g48220 | http://genomevolution.org/r/25q3 | No Gene Identified by Maizesequence.org
ra3 | 4 | ramosa3 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=12579 | DQ436920 | chr7 | -1 | GRMZM2G014729 | 1 | Good | http://genomevolution.org/r/25ec |  | GRMZM2G117564 | Sb02g039820 | PAC:18182587 | Os07g43160 | Bradi1g21420 | http://genomevolution.org/r/25ed | GRMZM2G014729 | Identical Assignment
rnc1 | 4 | ribonuclease III domain protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=941309 | EU971053 | chr3 | 1 | GRMZM2G035820 | 1 | Good | http://genomevolution.org/r/25gu |  | GRMZM2G121783 | Sb03g037610 | PAC:18178895 | Os01g59510 | Bradi2g52920 | http://genomevolution.org/r/25gv | GRMZM2G035820 | Identical Assignment
rop2 | 4 | Rho-related protein from plants2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=231132 | AY163379 | chr4 | -1 | GRMZM5G846811 | 2 | Good | http://genomevolution.org/r/260i |  | GRMZM5G803949 | Sb04g001690 | PAC:18174712 | Os02g02840 | Bradi3g01930 | http://genomevolution.org/r/260j | GRMZM5G846811 | Identical Assignment
rtp1 | 4 | [NAME] root [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65331 | L14063 | chr4 | -1 | GRMZM2G017557 | 1 | Good | http://genomevolution.org/r/25f0 |  | chr2:219679953-219956761 | Sb05g006910 | too big a gap | too big a gap | too big a gap | http://genomevolution.org/r/26ff | No Gene Identified by Maizesequence.org
sbe3 | 4 | starch branching enzyme3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=415181 | U65948 | chr2 | 1 | GRMZM2G073054 | 1 | Good | http://genomevolution.org/r/25k0 |  | GRMZM2G032628 | Sb06g015360 | PAC:18204584 | Os04g33460 | Bradi5g09170 | http://genomevolution.org/r/25k1 | No Gene Identified by Maizesequence.org
[NAME] | 4 | subtilisin-chymotrypsin inhibitor homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65019 | X69972 | chr8 | 1 | GRMZM2G028393 | 2 | Good | http://genomevolution.org/r/25gc | GRMZM2G028656||GRMZM2G042789 | GRMZM2G042789 | too big a gap | too big a gap | too big a gap | Bradi2g39280 | http://genomevolution.org/r/264n | GRMZM2G028393 | Identical Assignment
[NAME] | 4 | sorbitol dehydrogenase homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=63957 | DQ191049 | chr1 | 1 | GRMZM2G175423 | 1 | Good | http://genomevolution.org/r/25v9 |  | too big a gap | Sb07g025220 | PAC:18187738 | Os08g43190 | Bradi3g42030 | http://genomevolution.org/r/25va | GRMZM2G175423 | Identical Assignment
stp1 | 4 | sugar [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=57402 | T12737 | chr8 | -1 | GRMZM2G097768 | 2 | Can't proof | http://genomevolution.org/r/25n4 |  | GRMZM2G030274 | Sb09g029520 | PAC:18169482 | Os05g50280 | Bradi2g14900 | http://genomevolution.org/r/25n5 | No Gene Identified by Maizesequence.org
tif5A | 4 | eukaryotic translation initiation factor 5A |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018895 | AF034943 | chr7 | -1 | GRMZM2G144030 | 1 | Good | http://genomevolution.org/r/25rt |  | GRMZM2G113696 | Sb02g038290 | PAC:18184870 | Os07g40580 | Bradi1g22670 | http://genomevolution.org/r/25ru | GRMZM2G113696 | Different Assignment | http://genomevolution.org/r/26jv | Two independent GenBank records for tif5A match against both genes | but both show greater sequence identity to the one identified by us than the one identified by maizesequence.org. The location of the gene we identified agrees with the genetic location of tif5A | the location of the gene identifed by maizesequence.org does not.
tm20 | 4 | [NAME] protein20 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=293069 | X97570 | chr6 | -1 | GRMZM2G036564 | 2 | Good | http://genomevolution.org/r/25h0 | GRMZM2G313761 | GRMZM2G056826 | Sb10g010780 | PAC:18198129 | no synteny | Bradi1g43270 | http://genomevolution.org/r/25h1 | No Gene Identified by Maizesequence.org
[NAME] | 4 | tasselsheath1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=60537 |  | chr6 | -1 | GRMZM2G325850 | 1 | No GenBank Record|gene name in publication | http://genomevolution.org/r/261b |  | GRMZM2G397616 | Sb09g029510 | PAC:18169249 | Os05g50270 | Bradi2g14890 | http://genomevolution.org/r/261c | No Gene Identified by Maizesequence.org
ugp1 | 4 | UDP-glucose pyrophosphorylase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64409 | T14797 | chr7 | -1 | GRMZM2G032003 | 1 | Can't proof | http://genomevolution.org/r/25gg |  | AC233910.1_FG005 | Sb02g032250 | PAC:18181652 | Os09g38030 | Bradi4g37350 | http://genomevolution.org/r/25gh | No Gene Identified by Maizesequence.org
vpp1 | 4 | vacuolar proton pump homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=118875 | AY103622 | chr9 | -1 | GRMZM2G014240 | 1 | Good | http://genomevolution.org/r/25e8 |  | GRMZM2G148200 | Sb10g005250 | PAC:18197356 | Os06g08080 | Bradi1g47770 | [NAME] | GRMZM2G069095 | Different Assignment |  | Neither gene maps to correct chromosome | different GenBank records match different genes
[NAME] | 4 | wound induced protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=46003 | X71396 | chr8 | -1 | GRMZM2G156632 | 2 | Good | http://genomevolution.org/r/25td |  | chr3:22296626-22438596 | Sb03g007180 | PAC:18178587 | Os01g04050 | Bradi2g02150 | http://genomevolution.org/r/26ay | No Gene Identified by Maizesequence.org
zag4 | 4 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41327 | L46399 | chr9 | -1 | GRMZM2G531231 | 1 | weird gene model | http://genomevolution.org/r/25zh |  | AC195587.4_FG005 | Sb10g004390 | PAC:18199200 | Os06g06750 | Bradi1g48520 | http://genomevolution.org/r/25zi | No Gene Identified by Maizesequence.org
zmm6 | 4 | [NAME] mays [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=105274 | AJ430692 | chr1 | 1 | GRMZM2G159397 | 1 | Good | http://genomevolution.org/r/25tp | GRMZM2G098986 | chr4:44135640-44910547 | Sb07g026180 | PAC:18187519 | Os08g41950 | Bradi3g41260 | http://genomevolution.org/r/26hx | No Gene Identified by Maizesequence.org
a4 | 3 | anthocyaninless4 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=402641 | Y16040 | chr8 | 1 | GRMZM2G013726 | 2 | Good|inverted repeats surround gene | [NAME] |  | GRMZM2G026930 | Sb03g028890 | PAC:18178383 | Os01g44260 | Bradi2g44480 | http://genomevolution.org/r/25e7 | No Gene Identified by Maizesequence.org
adf1 | 3 | actin depolymerizing factor1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=113739 | X80820 | chr7 | 1 | GRMZM2G117603 | 1 | Good | http://genomevolution.org/r/25pm |  | GRMZM2G097122 | Sb02g033380 | PAC:18182325 | Os07g30090 | Bradi1g27720 | http://genomevolution.org/r/25pn | No Gene Identified by Maizesequence.org
ahh1 | 3 | [NAME] hydrolase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82085 | AW424691 | chr4 | 1 | GRMZM2G015295 | 1 | Can't proof | http://genomevolution.org/r/25ei | GRMZM2G494688 | too big a gap | too big a gap | too big a gap | Os11g26850 | Bradi4g19460 | http://genomevolution.org/r/25ej | No Gene Identified by Maizesequence.org
akh1 | 3 | aspartate kinase-homoserine dehydrogenase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66588 | L33912 | chr4 |  | GRMZM2G365423-GRMZM2G389303-GRMZM2G437977 | 2 | Gene split by maizesequence.org three genes | http://genomevolution.org/r/25xh |  | no synteny | too big a gap | too big a gap | no synteny | no synteny | http://genomevolution.org/r/26cz | No Gene Identified by Maizesequence.org
[NAME] | 3 | beta [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=850838 | Z25871 | chr7 | 1 | GRMZM2G058310 | 1 | Good | http://genomevolution.org/r/25io | GRMZM2G358467 | GRMZM2G358467 | Sb02g035600 | PAC:18184782 | Os07g35940 | Bradi1g25440 | http://genomevolution.org/r/25ip | GRMZM2G058310 | Identical Assignment
ane1 | 3 | androgenic [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=918124 | AJ011559 | chr4 | -1 | GRMZM2G039942 |  | Good | http://genomevolution.org/r/25hg |  | no synteny | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/25hh | No Gene Identified by Maizesequence.org
ane3 | 3 | androgenic embryo3 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=918125 | AJ307880 | chr10 | 1 | GRMZM2G372553 | 1 | Can't proof | http://genomevolution.org/r/25xj |  | chr4:33971692-34314394 | Sb07g003415 | PAC:18187702 | chr8:2932877-3054776 | chr3:15151970-15264370 | http://genomevolution.org/r/26d0 | GRMZM2G372553 | Identical Assignment
cal2 | 3 | calmodulin2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=112129 | X77397 | chr3 | 1 | GRMZM2G067511 | 1 | Good | http://genomevolution.org/r/25jg |  | GRMZM2G044963 | chr3:10895034-11088655 | PAC:18178427 | Os01g16240 | [NAME] | http://genomevolution.org/r/26g3 | GRMZM2G067511 | Identical Assignment
cal3 | 3 | calmodulin3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=112124 | X77396 | chr1 | 1 | GRMZM2G152891 | 1 | Good | http://genomevolution.org/r/25sn | GRMZM2G452760 | GRMZM2G333354 | [NAME] | PAC:18193248 | Os03g20370 | Bradi1g64020 | http://genomevolution.org/r/26hs | No Gene Identified by Maizesequence.org
cesa1 | 3 | cellulose [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309268 | AF200525 | chr8 | 1 | GRMZM2G112336 | 2 | Good | http://genomevolution.org/r/25p0 |  | GRMZM2G027723 | Sb09g005280 | PAC:18169857 | too big a gap | Bradi2g34240 | http://genomevolution.org/r/25p1 | No Gene Identified by Maizesequence.org
cesa2 | 3 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309271 | AF200526 | chr6 | 1 | GRMZM2G027723 | 1 | Good | http://genomevolution.org/r/25g8 |  | GRMZM2G112336 | Sb09g005280 | PAC:18169857 | Os05g08370 | Bradi2g34240 | http://genomevolution.org/r/25g9 | No Gene Identified by Maizesequence.org
cesa3 | 3 | cellulose synthase3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309274 | AF200527 | chr3 | 1 | GRMZM2G039454 | 1 | Good | http://genomevolution.org/r/25he |  | chr8:17374406-17713224 | [NAME] | PAC:18179439 | chr1:3437238-3858481 | Bradi2g03380 | http://genomevolution.org/r/26fq | No Gene Identified by Maizesequence.org
cesa5 | 3 | cellulose synthase5 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309286 | AF200529 | chr1 | -1 | GRMZM2G111642 | 1 | Good | http://genomevolution.org/r/25os | GRMZM2G111837 | chr5:3376421-3478948 | Sb01g004210 | PAC:18190769 | Os03g59340 | Bradi1g04600 | http://genomevolution.org/r/26h6 | GRMZM2G111642 | Identical Assignment
cesa6 | 3 | cellulose synthase6 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309305 | AF200530 | chr1 | 1 | GRMZM2G113137 | 1 | Good | http://genomevolution.org/r/25p4 |  | chr5:1513673-1621374 | Sb01g002050 | PAC:18194540 | Os03g62090 | Bradi1g02510 | http://genomevolution.org/r/26h7 | GRMZM2G113137 | Identical Assignment
[NAME] | 3 | cellulose [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309291 | AF200531 | chr7 | -1 | GRMZM2G025231 | 1 | Good | http://genomevolution.org/r/25fu |  | GRMZM2G028353 | Sb02g010110 | PAC:18181460 | Os07g24190 | Bradi1g29060 | http://genomevolution.org/r/25fv | GRMZM2G025231 | Identical Assignment
[NAME] | 3 | cellulose synthase8 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309307 | AF200532 | chr7 | 1 | GRMZM2G177631 | 1 | Good | http://genomevolution.org/r/25vh |  | GRMZM2G082580 | Sb02g007810 | PAC:18182624 | too big a gap | Bradi1g53210 | http://genomevolution.org/r/26ia | GRMZM2G177631 | Identical Assignment
cesa9 | 3 | cellulose synthase9 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309315 | AF200533 | chr2 |  | GRMZM2G018241 | 2 | partial identical duplicate:GRMZM2G150404 |assembly errors? | http://genomevolution.org/r/25f4 | GRMZM2G150404||GRMZM2G319836||GRMZM2G452739 | GRMZM2G424832 | Sb02g006290 | PAC:18183648 | Os07g10770 | [NAME] | http://genomevolution.org/r/25f5 | No Gene Identified by Maizesequence.org
chn3 | 3 | chitinase3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65643 | [NAME] | chr5 | 1 | GRMZM2G389582 | 1 | Good | http://genomevolution.org/r/25xr | GRMZM2G064360 | GRMZM2G064360 | chr10:60362013-60952691 | PAC:18196692 | Os06g51050 | Bradi1g29890 | http://genomevolution.org/r/26d4 | No Gene Identified by Maizesequence.org
[NAME] | 3 | cytokinin inducible protease1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64584 | T14785 | chr10 | 1 | GRMZM2G009443 | 1 | Can't proof | http://genomevolution.org/r/25do |  | chr3:98149258-98563013 | chr8:15672577-16127244 | PAC:18188479 | no synteny | Bradi4g39880 | http://genomevolution.org/r/263d | No Gene Identified by Maizesequence.org
crr2 | 3 | cytokinin response [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=248630 | AB031012 | chr10 | 1 | GRMZM2G392101 | 2 | Good | http://genomevolution.org/r/25xt |  | GRMZM2G040736 | Sb06g032600 | PAC:18203897 | Os04g57720 | Bradi5g25860 | http://genomevolution.org/r/25xu | No Gene Identified by Maizesequence.org
crt2 | 3 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=117679 | X89813 | chr7 | -1 | GRMZM2G358059 | 1 | Good | http://genomevolution.org/r/25x9 |  | GRMZM2G074687 | Sb02g007480 | chr2:9068052-9459326 | Os07g14270 | chr1:51525345-51829532 | http://genomevolution.org/r/26ik | GRMZM2G358059 | Identical Assignment
cyp8 | 3 | cytochrome P-450 8 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=54682 | L23209 | chr1 | 1 | GRMZM2G167986 | 1 | Good | http://genomevolution.org/r/25uj | GRMZM5G825885 | chr5:35250286-35467227 | Sb01g022690 | PAC:18193629 | Os10g26340 | no synteny | http://genomevolution.org/r/25uk | GRMZM2G167986 | Identical Assignment
dbf3 | 3 | DRE-binding protein3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=952759 | AY964718 |  | -1 | GRMZM2G124037 | 2 | Good | http://genomevolution.org/r/25qe | GRMZM2G124011 | GRMZM2G069082 | Sb02g030320 | PAC:18183469 | Os09g35020 | Bradi4g35650 | http://genomevolution.org/r/26hd | No Gene Identified by Maizesequence.org
dmt101 | 3 | DNA methyl transferase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=306165 | AF229183 | chr7 | -1 | GRMZM2G333916 | 1 | Good | http://genomevolution.org/r/25wl |  | chr2:233307394-233451043 | Sb02g004680 | PAC:18180811 | Os07g08500 | Bradi1g55290 | http://genomevolution.org/r/25wm | No Gene Identified by Maizesequence.org
elfg1 | 3 | elongation factor [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64574 | T14690 | chr6 | 1 | GRMZM2G122871 | 2 | Can't proof | http://genomevolution.org/r/25q8 |  | too big a gap | Sb10g022570 | PAC:18199136 | too big a gap | Bradi1g37490 | http://genomevolution.org/r/25q9 | No Gene Identified by Maizesequence.org
expa1 | 3 | alpha expansin1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403647 | AY104146 | chr3 | -1 | GRMZM2G339122 | 1 | Good | http://genomevolution.org/r/25wv |  | chr8:170230424-170337541 | Sb03g038290 | PAC:18177506 | Os01g60770 | Bradi2g53580 | http://genomevolution.org/r/26ih | GRMZM2G339122 | Identical Assignment
fea2 | 3 | fasciated ear2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=308904 | AY055124 | chr4 | -1 | GRMZM2G104925 | 2 | Good | http://genomevolution.org/r/25oa |  | chr5:181982875-182138256 | Sb04g025240 | PAC:18174128 | Os02g39100 | Bradi3g48060 | http://genomevolution.org/r/26h1 | No Gene Identified by Maizesequence.org
hda108 | 3 | histone deacetylase |  | [NAME] | AF440226 | chr4 | -1 | GRMZM2G136067 | 2 | Good | http://genomevolution.org/r/25r6 |  | no synteny | too big a gap | PAC:18186379 | no synteny | no synteny | http://genomevolution.org/r/25r7 | GRMZM2G136067 | Identical Assignment
[NAME] | 3 | histone2A1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=77942 | U08225 | chr9 | 1 | GRMZM2G305046 | 2 | Good | http://genomevolution.org/r/25vx | GRMZM2G305035 | chr1:41808424-42011815 | Sb01g039240 | PAC:18191957 | Os03g17100 | Bradi1g66360 | http://genomevolution.org/r/25vy | No Gene Identified by Maizesequence.org
his2b1 | 3 | histone2b1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25942 | X57312 | chr7 | 1 | GRMZM2G071959 | 1 | Good | http://genomevolution.org/r/25jw |  | GRMZM2G057852 | Sb02g025410 | chr2:28772140-29369437 | chr9:15818244-16396427 | chr4:36651237-37160395 | http://genomevolution.org/r/26g4 | No Gene Identified by Maizesequence.org
his2b2 | 3 | histone2b2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=65112 | X57313 | chr4 | -1 | GRMZM2G119071 | 2 | Good | http://genomevolution.org/r/25pw | GRMZM2G553422 | [NAME] | Sb07g022370 | PAC:18187016 | chr8:22231845-22466035 | no synteny | http://genomevolution.org/r/25px | No Gene Identified by Maizesequence.org
hsk1 | 3 | high-sulfur keratin homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64561 | T14673 | chr9 | -1 | GRMZM5G844723 | 2 | Can't proof | http://genomevolution.org/r/260g |  | too big a gap | chr1:58795354-59707921 | chr1:43070226-43850689 | chr3:12522642-13228664 | chr1:61561193-62320099 | http://genomevolution.org/r/26ed | No Gene Identified by Maizesequence.org
hsp101 | 3 | heat-shock protein 101 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=652094 | AF077337 | chr6 | 1 | GRMZM2G360681 | 1 | Good | http://genomevolution.org/r/25xd |  | chr8:123801667-124274400 | Sb09g025900 | PAC:18168555 | Os05g44340 | Bradi2g19540 | http://genomevolution.org/r/26il | GRMZM2G360681 | Identical Assignment
igl1 | 3 | indole-3-glycerol phosphate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=934735 | NM_001111532 | chr1 | -1 | GRMZM2G046191 | 1 | Assignment corrected by maizesequence.org |  |  |  |  |  |  |  |  | GRMZM2G046191 | Different Assignment | http://genomevolution.org/r/26k0 | The original GenBank record we used (U82201) was incorrect. Using NM_001111532 | our identification now agrees with maizesequence.orgs
kch2 | 3 | potassium channel2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=958832 | AJ132686 | chr8 | 1 | AC234152.1_FG007-AC234152.1_FG002 | 2 | Gene split by maizesequence.org | http://genomevolution.org/r/25cg |  | too big a gap | Sb09g021210 | too big a gap | chr5:20322584-21033855 | Bradi2g24450 | http://genomevolution.org/r/262u | No Gene Identified by Maizesequence.org
kch3 | 3 | potassium channel3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=975928 | AY461584 | chr4 | 1 | GRMZM2G081666 | 2 | Good | http://genomevolution.org/r/25ks |  | GRMZM2G178356 | Sb04g008780 | PAC:18172433 | Os02g14840 | Bradi3g09290 | [NAME] | GRMZM2G081666 | Identical Assignment
lpa1 | 3 | low phytic acid1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=242403 | AF323175 | chr1 | 1 | GRMZM2G155242 | 1 | Good | http://genomevolution.org/r/25t3 |  | [NAME] | Sb01g044290 | PAC:18192344 | Os03g09250 | Bradi1g71670 | http://genomevolution.org/r/25t4 | GRMZM2G155242 | Identical Assignment
lpa2 | 3 | low phytic acid2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=301214 | AY172635 | chr1 | -1 | GRMZM2G456626 | 1 | Good | http://genomevolution.org/r/25z7 |  | chr5:44106687-44456229 | Sb01g028090 | PAC:18195322 | Os10g42550 | Bradi3g34350 | http://genomevolution.org/r/26dt | GRMZM2G456626 | Identical Assignment
[NAME] | 3 | MADS1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=617663 | AF112148 | chr9 | 1 | GRMZM2G171365 | 2 | Good | http://genomevolution.org/r/25ux |  | GRMZM2G026223 | Sb01g049020 | PAC:18195918 | Os03g03100 | Bradi1g77020 | http://genomevolution.org/r/25uy | GRMZM2G171365 | Identical Assignment
meg1 | 3 | maternally expressed gene1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=894726 | AY536120 | chr7 | 1 | GRMZM2G354335 | 1 | Maizesequence.org adds to extra exons | http://genomevolution.org/r/25x7 | GRMZM2G116212||GRMZM2G137959||GRMZM2G145466||GRMZM2G175896||GRMZM2G175912||GRMZM2G181051||GRMZM2G573952||GRMZM2G573956 | no synteny | too big a gap | chr2:5621305-6247358 | chr7:4506584-4989949 | chr1:53134436-53575698 | http://genomevolution.org/r/26cu | No Gene Identified by Maizesequence.org
mir1 | 3 | maize insect resistance1 |  | [NAME] | AF019145 | chr6 | -1 | GRMZM2G150276 | 2 | Good | http://genomevolution.org/r/25sb | GRMZM2G150256 | too big a gap | Sb10g027980 | too big a gap | chr6:28229592-28756822 | chr1:28110523-29020642 | http://genomevolution.org/r/26ag | No Gene Identified by Maizesequence.org
mrpa3 | 3 | multidrug resistance-associated protein3 |  | [NAME] | AY609318 | chr9 | 1 | GRMZM2G111903 | 1 | Good | http://genomevolution.org/r/25ou |  | chr6:76633488-76863259 | Sb10g004070 | PAC:18196968 | Os06g06440 | Bradi1g48700 | http://genomevolution.org/r/25ov | No Gene Identified by Maizesequence.org
[NAME] | 3 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=115996 | AF458962 | chr3 | 1 | AC203535.4_FG001 | 1 | Good | http://genomevolution.org/r/25bu | GRMZM5G826686||GRMZM5G882384 | too big a gap | Sb03g044450 | chr3:43681517-44108333 | chr1:40516492-40965296 | chr2:56751927-57123741 | http://genomevolution.org/r/26ex | GRMZM2G081557 | Different Assignment | http://genomevolution.org/r/26jd | Two independent GenBank Records for myb2 hit the gene we identified as myb. Neither shows any similarity to gene identified by maizesequence.org. The maizesequence.org gene is located on chr10 but [NAME] is located on chr3 according to maizegdb locus page.
ocl1 | 3 | outer cell [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=223027 | Y17898 | chr3 | 1 | GRMZM2G026643 | 1 | Good | http://genomevolution.org/r/25g2 |  | chr8:8809046-9953073 | Sb03g008090 | PAC:18176511 | no synteny | no synteny | http://genomevolution.org/r/25g3 | No Gene Identified by Maizesequence.org
p2 | 3 | pericarp [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=484812 | AF210617 | chr1 | 1 | GRMZM2G057027 | 1 | duplicate of P1 | http://genomevolution.org/r/25la |  | GRMZM2G022686 | Sb01g037690 | PAC:18191887 | Os03g19120 | Bradi1g64140 | http://genomevolution.org/r/2670 | No Gene Identified by Maizesequence.org
pcna1 | 3 | proliferating cell nuclear [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=113517 | X79065 | chr5 | 1 | GRMZM2G030523 | 1 | Good | http://genomevolution.org/r/25ge |  | GRMZM2G108712 | Sb04g036440 | PAC:18174009 | Os02g56130 | Bradi3g54630 | http://genomevolution.org/r/25gf | GRMZM2G030523 | Identical Assignment
[NAME] | 3 | pyruvate decarboxylase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25424 | D14456 | chr8 | -1 | GRMZM2G038821 | 2 | Good | http://genomevolution.org/r/25h8 |  | chr3:14813273-14979702 | Sb03g005240 | PAC:18179749 | Os01g06660 | Bradi2g03840 | http://genomevolution.org/r/25h9 | GRMZM2G038821 | Identical Assignment
pdc3 | 3 | pyruvate [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25425 | D14457 | chr1 | -1 | GRMZM2G087186 | 1 | Good | http://genomevolution.org/r/25lu | GRMZM5G841025 | chr9:137362417-137474944 | Sb01g038360 | PAC:18193994 | Os03g18220 | [NAME] | http://genomevolution.org/r/26gk | GRMZM2G087186 | Identical Assignment
pdi1 | 3 | protein disulfide [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82183 | AY739284 | chr4 | -1 | GRMZM2G091481 | 1 | Good | http://genomevolution.org/r/25mi | GRMZM2G393320 | GRMZM2G163421 | Sb05g006150 | [NAME] | Os11g09280 | too big a gap | http://genomevolution.org/r/26gp | No Gene Identified by Maizesequence.org
pgl8 | 3 | exopolygalacturonase8 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66201 | X64408 | chr6 | -1 | GRMZM2G394259 | 2 | Good | http://genomevolution.org/r/25xx |  | chr9:101722909-102205276 | Sb10g024010 | too big a gap | Os06g40890 | Bradi1g36100 | http://genomevolution.org/r/26d7 | No Gene Identified by Maizesequence.org
phot1 | 3 | blue-light receptor phototropin 1 |  | [NAME] | AF033263 | chr3 | 1 | GRMZM2G001457 | 2 | Good | [NAME] |  | no synteny | Sb08g000260 | PAC:18189258 | Os11g01140 | Bradi4g45310 | http://genomevolution.org/r/25cx | No Gene Identified by Maizesequence.org
phyB1 | 3 | phytochromeB1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=30051 | DQ307579 | chr1 | 1 | GRMZM2G124532 | 1 | maizesequence.org CDS starts too late (insertion into B73 exon?) | http://genomevolution.org/r/25qg |  | GRMZM2G092174 | Sb01g037340 | PAC:18193872 | [NAME] | Bradi1g64360 | http://genomevolution.org/r/25qh | No Gene Identified by Maizesequence.org
piip1 | 3 | physical impedance induced protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=411266 | AF001634 | chr9 | 1 | AC234161.1_FG001 | 2 | Good | http://genomevolution.org/r/25ck | AC234161.1_FG002 | GRMZM2G094639 | Sb01g029630 | [NAME] | Os10g40420 | Bradi3g32930 | http://genomevolution.org/r/25cl | No Gene Identified by Maizesequence.org
pip1e | 3 | plasma membrane intrinsic protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403369 | AF326489 | chr4 | -1 | GRMZM2G081843 | 2 | Good | http://genomevolution.org/r/25ku |  | chr5:216261406-216432880 | Sb04g037800 | PAC:18174589 | Os02g57720 | Bradi3g56020 | http://genomevolution.org/r/25kv | GRMZM2G081843 | Identical Assignment
pip1f | 3 | plasma membrane intrinsic protein1 |  | [NAME] | AF326490 | chr9 | 1 | GRMZM2G136032 | 1 | Good | http://genomevolution.org/r/25r4 |  | chr6:111097042-111816952 | Sb10g007610 | PAC:18199627 | chr6:5814961-6206831 | chr1:43860799-44292265 | http://genomevolution.org/r/26hj | GRMZM2G136032 | Identical Assignment
pip2b | 3 | [NAME] intrinsic [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403378 | AF326492 | chr2 | 1 | GRMZM2G092125 | 2 | Good | http://genomevolution.org/r/25mo |  | GRMZM2G014914 | Sb02g010760 | too big a gap | too big a gap | Bradi1g28760 | http://genomevolution.org/r/25mp | GRMZM2G092125 | Identical Assignment
pip2c | 3 | [NAME] intrinsic [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403381 | AF326493 | chr4 | 1 | GRMZM2G081192 | 2 | Good | http://genomevolution.org/r/25ko | GRMZM2G081333 | GRMZM2G178706 | Sb04g026650 | PAC:18173785 | Os02g41860 | Bradi3g49360 | http://genomevolution.org/r/25kp | GRMZM2G081192 | Identical Assignment
pip2d | 3 | [NAME] intrinsic [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403384 | AF326494 | chr5 | 1 | GRMZM2G154628 | 1 | Good | http://genomevolution.org/r/25sv |  | chr4:154959920-155345379 | Sb04g032430 | PAC:18170819 | Os02g44630 | Bradi3g51390 | http://genomevolution.org/r/26aq | GRMZM2G154628 | Identical Assignment
pip2e | 3 | [NAME] intrinsic [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403375 | AF326491 | chr7 | -1 | GRMZM2G014914 | 1 | Good | http://genomevolution.org/r/25eg | GRMZM2G047368 | GRMZM2G092125 | Sb02g010760 | PAC:18181054 | too big a gap | Bradi1g28760 | http://genomevolution.org/r/25eh | No Gene Identified by Maizesequence.org
pip2f | 3 | [NAME] intrinsic [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403387 | AF326495 | chr7 | -1 | GRMZM2G047368 | 1 | Good | http://genomevolution.org/r/25hs |  | GRMZM2G014914 | too big a gap | PAC:18181068 | too big a gap | Bradi1g28760 | [NAME] | No Gene Identified by Maizesequence.org
pk4 | 3 | protein kinase4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=306170 | AF141378 | chr3 | 1 | GRMZM2G014833 | 1 | Good | http://genomevolution.org/r/25ee |  | GRMZM2G136400 | Sb03g035170 | PAC:18179149 | Os01g55450 | Bradi2g50440 | http://genomevolution.org/r/25ef | No Gene Identified by Maizesequence.org
pki1 | 3 | protein kinase inhibitor1 |  | [NAME] | Z29643 | chr1 | -1 | GRMZM2G018728 | 1 | Good | http://genomevolution.org/r/25fa |  | chr9:133645407-133748115 | Sb01g036830 | PAC:18195393 | Os03g20630 | Bradi1g63860 | [NAME] | No Gene Identified by Maizesequence.org
pmg1 | 3 | phosphoglycerate mutase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25939 | Z33612 | chr8 | -1 | GRMZM5G833389 | 2 | Good | http://genomevolution.org/r/2600 |  | GRMZM2G003385 | Sb03g038020 | PAC:18176072 | Os01g60190 | Bradi2g53340 | http://genomevolution.org/r/2601 | No Gene Identified by Maizesequence.org
prf1 | 3 | profilin homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=51449 | X73279 | chr6 | 1 | GRMZM2G074361 | 1 | Good | http://genomevolution.org/r/25k6 |  | GRMZM2G109842 | Sb09g026120 | PAC:18168727 | chr5:25962071-26565743 | Bradi2g19360 | http://genomevolution.org/r/26g7 | GRMZM2G074361 | Identical Assignment
qm1 | 3 | QM1 homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=77936 | U06108 | chr5 | -1 | GRMZM2G087233 | 2 | Good | http://genomevolution.org/r/25lw |  | GRMZM2G027451 | Sb01g015470 | chr1:12141774-13209266 | no synteny | chr1:12210976-12768966 | http://genomevolution.org/r/26gl | GRMZM2G087233 | Identical Assignment
rbap1 | 3 | WD-repeat protein RBAP1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=452219 | AF250047 | chr8 | 1 | GRMZM2G316113 | 2 | Good | http://genomevolution.org/r/25w7 |  | GRMZM2G137965 | Sb03g032630 | PAC:18179604 | Os01g51300 | Bradi2g47940 | http://genomevolution.org/r/25w8 | No Gene Identified by Maizesequence.org
[NAME] | 3 | iron-sulfur [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=66387 | W49887 |  | -1 | [NAME] | 1 | Can't proof | http://genomevolution.org/r/25tz | GRMZM2G162805 | GRMZM2G038365 | chr4:10212873-10952629 | PAC:18172396 | Os02g15560 | no synteny | http://genomevolution.org/r/26i0 | No Gene Identified by Maizesequence.org
rpl17 | 3 | ribosomal protein L17 |  | [NAME] | AF034948 | chr4 | -1 | GRMZM2G702426 | 2 | Good | http://genomevolution.org/r/25zp |  | GRMZM2G148744 | Sb07g026305 | PAC:18186773 | Os08g41810 | Bradi3g41150 | http://genomevolution.org/r/25zq | GRMZM2G702426 | Identical Assignment
rpot1 | 3 | [NAME] polymerase T phage-like 1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=165004 | AF127021 | chr7 | 1 | GRMZM2G381395 | 1 | Good | http://genomevolution.org/r/25xp |  | chr2:211722035-211948803 | Sb02g039520 | chr2:43060846-43660824 | chr7:25585675-26175382 | chr1:16357976-17102850 | http://genomevolution.org/r/26in | No Gene Identified by Maizesequence.org
rps11 | 3 | ribosomal protein S11 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=24949 | X55967 | chr10 | 1 | GRMZM2G019325 | 2 | Good | http://genomevolution.org/r/25fc |  | GRMZM2G044800 | Sb06g028330 | PAC:18205505 | Os04g52354 | Bradi5g21630 | http://genomevolution.org/r/26fh | GRMZM2G044800 | Different Assignment | http://genomevolution.org/r/26jj | Two independent GenBank records for rps11 both map better to the gene we identified than the gene identified by maizesequence.org. Our gene's chromosomal location agrees with genetic location of rps11 on the maizegdb locus page. The location of the maizesequence.org gene does not.
rps4 | 3 | ribosomal protein S4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=99754 | AF015522 | chr1 | -1 | GRMZM2G035017 | 1 | Good | http://genomevolution.org/r/25gq |  | GRMZM2G125271 | Sb01g001850 | chr1:[PHONE] | chr3:35199453-35652824 | chr1:1055737-1604152 | http://genomevolution.org/r/264u | GRMZM2G035017 | Identical Assignment
sar1 | 3 | SAR homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=63952 | [NAME] | chr3 | 1 | GRMZM2G038356 | 1 | Good | http://genomevolution.org/r/25h4 |  | GRMZM2G086636 | Sb03g013550 | PAC:18178788 | Os01g23620 | Bradi2g12510 | http://genomevolution.org/r/25h5 | No Gene Identified by Maizesequence.org
spp1 | 3 | sucrose-phosphatase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403254 | AF283564 | chr8 | -1 | GRMZM2G055489 | 2 | Good | http://genomevolution.org/r/25i8 |  | chr6:151506683-152515688 | chr9:52109989-52638612 | chr9:20398414-21095532 | chr5:22388038-22888762 | chr2:20216394-20993991 | http://genomevolution.org/r/265k | GRMZM2G055489 | Identical Assignment
sps1 | 3 | sucrose phosphate synthase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25299 | M97550 | chr8 | 1 | GRMZM5G875238 | 2 | Good | http://genomevolution.org/r/260u |  | GRMZM2G140107 | [NAME] | PAC:18178909 | Os01g69030 | Bradi2g58860 | http://genomevolution.org/r/260v | No Gene Identified by Maizesequence.org
ss1 | 3 | starch synthase I |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=935314 | AF036891 | chr9 | 1 | GRMZM2G129451 | 1 | Good | http://genomevolution.org/r/25qo |  | chr6:76952255-77196334 | Sb10g004160 | PAC:18197065 | Os06g06560 | Bradi1g48610 | http://genomevolution.org/r/26hf | GRMZM2G129451 | Identical Assignment
taf1 | 3 | transcription associated factor1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64935 | T12672 | chr3 | 1 | GRMZM2G002276 | 1 | Can't proof | http://genomevolution.org/r/25cy |  | GRMZM2G149230 | Sb03g039720 | PAC:18177060 | Os01g62820 | Bradi2g54860 | http://genomevolution.org/r/25cz | No Gene Identified by Maizesequence.org
tif1 | 3 | translation initiation factor1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=81996 | AF034944 | chr7 | -1 | GRMZM5G835323 | 1 | Good | http://genomevolution.org/r/2604 |  | chr2:203725214-203894272 | Sb02g035170 | PAC:18181078 | Os07g34589 | Bradi1g25840 | http://genomevolution.org/r/26j3 | GRMZM5G835323 | Identical Assignment
tlk2 | 3 | tousled-like protein kinase2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=113397 | AF012889 | chr5 | 1 | GRMZM2G172132 | 2 | Can't proof | http://genomevolution.org/r/25v1 |  | GRMZM2G016671 | Sb01g008020 | PAC:18191278 | Os03g53880 | Bradi1g08540 | http://genomevolution.org/r/25v2 | GRMZM2G172132 | Identical Assignment
trh1 | 3 | [NAME] homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82374 | T15273 | chr6 | 1 | GRMZM2G424053 | 1 | Good | http://genomevolution.org/r/25yr |  | chr8:122374111-122477585 | Sb09g024960 | PAC:18169992 | chr5:25057494-25544351 | Bradi2g20440 | http://genomevolution.org/r/26iw | GRMZM2G079089 | Different Assignment | http://genomevolution.org/r/26k3 | Two independent GenBank records for trh1 both hit the gene we identified and not the gene identified by maizesequence.org. Our gene agrees with the genetic location recorded by maizegdb | maizesequence.org's does not.
uce1 | 3 | ubiquitin conjugating enzyme1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=64558 | [NAME] | chr3 | -1 | GRMZM2G018447 | 2 | Good | http://genomevolution.org/r/25f6 |  | GRMZM2G007381 | Sb08g022990 | PAC:18189596 | Os12g44000 | Bradi4g00660 | http://genomevolution.org/r/25f7 | No Gene Identified by Maizesequence.org
vacs1 | 3 | vacuolar sorting receptor [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82419 | AY105262 | chr9 | -1 | GRMZM2G067546 | 2 | Good | http://genomevolution.org/r/25ji |  | GRMZM2G049211 | Sb01g036170 | [NAME] | Os03g21720 | Bradi1g63210 | http://genomevolution.org/r/25jj | No Gene Identified by Maizesequence.org
yab10 | 3 | yabby homolog10 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018046 | AY313904 | chr1 | 1 | GRMZM2G167824 | 1 | Good | http://genomevolution.org/r/25uh |  | GRMZM2G074543 | Sb01g017560 | PAC:18190942 | Os10g36420 | Bradi3g30410 | http://genomevolution.org/r/25ui | No Gene Identified by Maizesequence.org
ypt1 | 3 | ypt homolog1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=25949 | X63277 | chr2 | -1 | GRMZM2G086971 | 1 | Good | http://genomevolution.org/r/25lq |  | chr10:118938037-119075100 | Sb06g017640 | PAC:18205317 | chr4:21509416-21975014 | Bradi5g11290 | http://genomevolution.org/r/26gj | GRMZM2G086971 | Identical Assignment
zfl1 | 3 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41309 | AY179882 | chr10 | 1 | GRMZM2G098813 | 2 | Good | http://genomevolution.org/r/25ng |  | GRMZM2G180190 | Sb06g027340 | PAC:18205732 | [NAME] | Bradi5g20340 | http://genomevolution.org/r/25nh | No Gene Identified by Maizesequence.org
zmm24 | 3 | [NAME] mays MADS24 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=897700 | AJ430638 | chr1 | -1 | GRMZM2G087095 | 1 | Good | http://genomevolution.org/r/25ls | GRMZM2G032339 | GRMZM2G032339 | Sb01g007790 | PAC:18191766 | Os03g54160 | Bradi1g08340 | http://genomevolution.org/r/2678 | No Gene Identified by Maizesequence.org
[NAME] | 3 | zinc finger protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=118874 | W99253 |  | -1 | GRMZM5G836222 | 1 | Good | http://genomevolution.org/r/2606 | GRMZM5G803160 | chr6:98575494-98877012 | Sb10g024060 | too big a gap | Os06g41010 | Bradi1g36050 | http://genomevolution.org/r/2607 | No Gene Identified by Maizesequence.org
[NAME] | 2 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=854977 | AY093614 | chr5 | -1 | GRMZM5G842058 | 1 | Good | http://genomevolution.org/r/260c |  | chr4:168939015-169058991 | Sb04g038300 | PAC:18171162 | Os02g58320 | too big a gap | http://genomevolution.org/r/26j5 | GRMZM5G842058 | Identical Assignment
cdj2 | 2 | chaperone DNA J2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=57224 | AF053468 | chr1 | -1 | GRMZM2G364069 | 1 | Good | http://genomevolution.org/r/25xf |  | GRMZM2G134980 | Sb01g013390 | PAC:18196410 | Os03g44620 | Bradi1g13640 | http://genomevolution.org/r/25xg | No Gene Identified by Maizesequence.org
csy1 | 2 | chloroplast SecY-1 |  | [NAME] | AF039304 | chr10 | -1 | GRMZM5G809546 |  | Good | http://genomevolution.org/r/25zt |  | too big a gap | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/25zu | GRMZM5G809546 | Identical Assignment
dcd1 | 2 | [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=274903 | FJ469780 | chr10 | 1 | GRMZM2G083459 | 1 | Good | http://genomevolution.org/r/25l0 |  | GRMZM2G120178 | Sb09g003830 | no synteny | Os05g05710 | Bradi2g35810 | http://genomevolution.org/r/25l1 | No Gene Identified by Maizesequence.org
ea1 | 2 | egg apparatus1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=936188 | AY733074 | chr7 | -1 | GRMZM2G456746 | 1 | Good | http://genomevolution.org/r/25z9 |  | chr2:210338833-210443725 | Sb02g038820 | [NAME] | Os07g41400 | Bradi1g21940 | http://genomevolution.org/r/26du | No Gene Identified by Maizesequence.org
gol1 | 2 | goliath1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=82001 | T18797.1 | chr4 | -1 | GRMZM2G080079 | 2 | Can't proof | http://genomevolution.org/r/2615 |  | GRMZM2G140651 | Sb04g028130 | PAC:18172421 | Os02g50990 | Bradi3g59500 | http://genomevolution.org/r/2616 | No Gene Identified by Maizesequence.org
hir1 | 2 | hypersensitive induced reaction1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=309368 | AF236373 | chr4 | 1 | GRMZM2G117755 | 2 | Good | http://genomevolution.org/r/25po |  | chr1:216825131-217090405 | Sb07g019760 | PAC:18186665 | Os08g30790 | Bradi3g35370 | http://genomevolution.org/r/25pp | GRMZM2G117755 | Identical Assignment
[NAME] | 2 | hopi r1/b1 family member1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=275316 | AJ251719 | chr10 | 1 | GRMZM5G822829 | 2 | Good|lc1 | http://genomevolution.org/r/25zz |  | GRMZM2G172795 | Sb06g025060 | PAC:18202973 | Os04g47059 | chr5:20758637-21209681 | http://genomevolution.org/r/26j2 | No Gene Identified by Maizesequence.org
hsbp1 | 2 | herbicide safener binding protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=273025 | AF033496 | chr2 | -1 | GRMZM2G085924 |  | Good | http://genomevolution.org/r/25lk | GRMZM2G385313||GRMZM2G506270 | no synteny | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/25ll | No Gene Identified by Maizesequence.org
incw3 | 2 | invertase cell wall3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=194081 | AF043346 | chr10 | 1 | GRMZM2G123633 | 2 | Good | http://genomevolution.org/r/25qc | GRMZM2G095725 | GRMZM2G095725 | too big a gap | PAC:18203366 | Os04g33740 | Bradi5g09450 | http://genomevolution.org/r/269h | No Gene Identified by Maizesequence.org
lem1 | 2 | lethal embryo [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=917245 | [NAME] | chr1 | -1 | AC234157.1_FG002 | 1 | Good | http://genomevolution.org/r/25ci |  | GRMZM2G137829 | Sb01g006910 | PAC:18192774 | [NAME] | Bradi1g07370 | http://genomevolution.org/r/25cj | AC234157.1_FG002 | Identical Assignment
[NAME] | 2 | lycopene epsilon cyclase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1219919 | EU924262 | chr8 | 1 | GRMZM2G012966 | 2 | Good | http://genomevolution.org/r/25e4 |  | GRMZM2G070923 | Sb03g026020 | PAC:18176860 | Os01g39960 | Bradi2g41890 | http://genomevolution.org/r/26f8 | No Gene Identified by Maizesequence.org
mez1 | 2 | enhancer of zeste1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=754841 | AF443596 | chr6 | -1 | GRMZM2G157820 | 2 | Good | http://genomevolution.org/r/25tl |  | chr9:16202997-16340595 | Sb10g004560 | PAC:18199180 | too big a gap | Bradi1g48340 | http://genomevolution.org/r/26hw | No Gene Identified by Maizesequence.org
ms26 | 2 | male sterile26 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=113518 | AF366297 | chr1 | -1 | GRMZM2G091822 | 1 | Good | http://genomevolution.org/r/25mk |  | too big a gap | Sb01g045960 | PAC:18195337 | Os03g07250 | Bradi1g73800 | http://genomevolution.org/r/26gq | No Gene Identified by Maizesequence.org
mwp1 | 2 | milkweed pod1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=969623 | EU925398 | chr7 | -1 | GRMZM2G082264 | 1 | Good | http://genomevolution.org/r/25kw |  | chr2:178831468-179061219 | Sb02g024110 | PAC:18184148 | Os09g23200 | Bradi4g29700 | http://genomevolution.org/r/26gc | GRMZM2G082264 | Identical Assignment
ocl2 | 2 | outer cell [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=314435 | AJ250984 | chr10 | 1 | AC235534.1_FG007 | 2 | Good | [NAME] |  | chr2:16627802-16836331 | Sb06g025750 | PAC:18204432 | Os04g48070 | Bradi5g18720 | http://genomevolution.org/r/25cn | No Gene Identified by Maizesequence.org
ocl3 | 2 | outer cell [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=314444 | AJ250985 | chr7 | 1 | GRMZM2G116658 | 1 | Good | http://genomevolution.org/r/25pg |  | chr2:194750978-194957777 | Sb02g030470 | PAC:18184935 | Os09g35760 | Bradi4g35760 | http://genomevolution.org/r/26h8 | No Gene Identified by Maizesequence.org
ocl5a | 2 | outer cell layer5a |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=314451 | AJ250987 | chr4 | -1 | GRMZM2G130442 | 2 | Good | http://genomevolution.org/r/25qs |  | GRMZM2G118063 | Sb07g005180 | PAC:18186881 | Os08g08820 | Bradi3g15330 | http://genomevolution.org/r/25qt | No Gene Identified by Maizesequence.org
pac1 | 2 | pale aleurone color1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=871231 | AY115485 | chr5 | -1 | GRMZM2G058292 | 1 | Good|maizesequence.org includes more 5' UTR | http://genomevolution.org/r/25im | GRMZM5G872691 | chr4:156037502-156392391 | Sb04g031730 | chr4:31805659-32250049 | Os02g45810 | Bradi3g51820 | http://genomevolution.org/r/26g0 | GRMZM2G058432 | Different Assignment | http://genomevolution.org/r/26jr | Maizesequence.org identified the gene immediately upstream of the gene we identified as pac1. Annotated exons of the original GenBank sequence | as well as the sequence of a second independent record support our assignment over that of maizesequence.org
phyB2 | 2 | phytochromeB2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=41105 | AY234828 | chr9 | -1 | GRMZM2G092174 | 2 | Good | http://genomevolution.org/r/25mq |  | GRMZM2G124532 | Sb01g037340 | PAC:18193872 | [NAME] | Bradi1g64360 | http://genomevolution.org/r/25mr | No Gene Identified by Maizesequence.org
rel2 | 2 | ramosa1 enhancer locus2 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=2365883 | GQ927145 | chr10 | -1 | GRMZM2G042992 | 1 | Good | http://genomevolution.org/r/2619 |  | GRMZM2G124115 | Sb07g004180 | PAC:18187322 | Os08g06480 | Bradi3g16250 | http://genomevolution.org/r/261a | No Gene Identified by Maizesequence.org
rmr1 | 2 | required to maintain repression1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=175395 | EU155001 | chr6 | 1 | GRMZM2G154946 | 1 | Good | http://genomevolution.org/r/25sx | GRMZM2G453655 | chr8:114358850-114478808 | Sb09g019410 | PAC:18167972 | Os05g32610 | Bradi2g26500 | http://genomevolution.org/r/25sy | No Gene Identified by Maizesequence.org
scm1 | 2 | self-colored marbled1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=250563 | AF135458 | chr10 | 1 | GRMZM5G822829 | 2 | can't proof|lc1 | http://genomevolution.org/r/25zy |  | GRMZM2G172795 | Sb06g025060 | PAC:18202973 | Os04g47059 | chr5:20758637-21209681 | http://genomevolution.org/r/26j2 | No Gene Identified by Maizesequence.org
sgo1 | 2 | shugoshin centromeric cohesion1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=870601 | AY964185 | chr7 | -1 | GRMZM2G074082 | 1 | Good | http://genomevolution.org/r/25k4 |  | chr2:161225247-161399041 | Sb02g006220 | PAC:18180893 | too big a gap | chr1:52201553-52712348 | http://genomevolution.org/r/26g6 | GRMZM2G074082 | Identical Assignment
vp15 | 2 | viviparous15 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018083 | DQ273133 | chr5 | -1 | GRMZM2G121468 | 1 | Good | http://genomevolution.org/r/25q6 | GRMZM2G421883 | GRMZM5G835259 | Sb04g022920 | PAC:18173199 | Os02g35200 | Bradi3g45980 | http://genomevolution.org/r/25q7 | No Gene Identified by Maizesequence.org
why1 | 2 | whirly1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1232893 | EU595664 | chr6 | -1 | GRMZM2G155662 | 2 | Good | http://genomevolution.org/r/25t7 |  | chr9:19882476-20163439 | Sb10g003170 | no synteny | no synteny | no synteny | http://genomevolution.org/r/25t8 | No Gene Identified by Maizesequence.org
wtf1 | 2 | what's this factor?1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1232891 | FJ264201 | chr8 | 1 | GRMZM2G403797 | 2 | Good | http://genomevolution.org/r/25yb |  | chr6:165347972-165536514 | Sb09g029040 | PAC:18170064 | Os05g49610 | Bradi2g15890 | http://genomevolution.org/r/26is | No Gene Identified by Maizesequence.org
xyl1 | 2 | xylanase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=403543 | AF063865 | chr1 | 1 | GRMZM2G170839 |  | Good | [NAME] |  | chr9:66508733-67593699 | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/26bp | No Gene Identified by Maizesequence.org
yab14 | 2 | yabby14 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018047 | AY313901 | chr10 | -1 | GRMZM2G005353 | 2 | Good | http://genomevolution.org/r/25dc |  | GRMZM2G054795 | Sb06g023770 | PAC:18203625 | Os04g45330 | [NAME] | http://genomevolution.org/r/25dd | No Gene Identified by Maizesequence.org
yab15 | 2 | yabby15 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=904576 | AY313902 | chr5 | 1 | GRMZM2G529859 | 1 | Good | http://genomevolution.org/r/25zf |  | chr4:148375754-148648991 | Sb04g033590 | PAC:18172498 | Os02g42950 | Bradi3g50050 | http://genomevolution.org/r/26j0 | No Gene Identified by Maizesequence.org
yab9 | 2 | yabby9 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018048 | AY313903 | chr5 | 1 | GRMZM2G074543 | 2 | Good | http://genomevolution.org/r/25k8 |  | GRMZM2G167824 | Sb01g017560 | PAC:18190942 | Os10g36420 | Bradi3g30410 | http://genomevolution.org/r/25k9 | No Gene Identified by Maizesequence.org
zcn1 | 2 | phosphatidylethanolamine-binding protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203920 | EU241917 | chr3 | -1 | GRMZM2G092008 | 2 | Good | [NAME] |  | GRMZM2G338454 | Sb08g003210 | PAC:18189088 | Os12g05590 | Bradi4g42400 | http://genomevolution.org/r/25mn | No Gene Identified by Maizesequence.org
zcn10 | 2 | phosphatidylethanolamine-binding protein10 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203929 | EU241926 | chr3 | -1 | GRMZM2G152689 | 1 | Good | http://genomevolution.org/r/25sl |  | GRMZM2G021614 | Sb03g008270 | PAC:18178661 | Os01g02120 | Bradi2g01020 | http://genomevolution.org/r/25sm | No Gene Identified by Maizesequence.org
zcn11 | 2 | phosphatidylethanolamine-binding protein11 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203930 | EU241927 | chr6 | 1 | GRMZM2G117057 | 2 | Good | http://genomevolution.org/r/25pi |  | chr9:46016362-46437126 | Sb10g013070 | too big a gap | no synteny | Bradi1g42510 | http://genomevolution.org/r/25pj | No Gene Identified by Maizesequence.org
zcn12 | 2 | phosphatidylethanolamine-binding protein12 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203931 | EU241928 | chr3 | 1 | GRMZM2G103666 | 1 | Good | http://genomevolution.org/r/25o2 |  | chr8:174392704-174549773 | Sb03g034580 | PAC:18178710 | Os01g54490 | chr2:49523586-49858200 | http://genomevolution.org/r/26gz | No Gene Identified by Maizesequence.org
zcn13 | 2 | phosphatidylethanolamine-binding protein13 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203932 | EU241904 | chr5 | -1 | GRMZM2G108016 | 1 | Good | http://genomevolution.org/r/25oc |  | chr4:228399242-228975376 | Sb04g008320 | PAC:18171596 | Os02g13830 | Bradi3g08890 | http://genomevolution.org/r/26h2 | No Gene Identified by Maizesequence.org
zcn14 | 2 | phosphatidylethanolamine-binding protein14 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203933 | EU241929 | chr8 | 1 | GRMZM2G373928 | 2 | Maybe annotated as pseudogene? | http://genomevolution.org/r/25xl |  | chr3:3159974-3359907 | Sb03g001700 | too big a gap | Os01g11940 | Bradi2g07070 | http://genomevolution.org/r/26im | No Gene Identified by Maizesequence.org
[NAME] | 2 | phosphatidylethanolamine-binding [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203934 | EU241930 | chr6 | 1 | GRMZM2G051338 | 2 | 5' UTR unannotated by maizesequence.org | http://genomevolution.org/r/25hy |  | chr9:18268944-18380657 | Sb10g003940 | PAC:18197206 | Os06g06320 | Bradi1g48830 | http://genomevolution.org/r/26fv | No Gene Identified by Maizesequence.org
zcn16 | 2 | phosphatidylethanolamine-binding protein16 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203935 | EU241931 | chr5 | -1 | GRMZM2G127121 | 1 | Good | http://genomevolution.org/r/25qk |  | chr4:133272419-133506364 | Sb04g025210 | PAC:18171304 | Os02g39064 | chr3:49521145-50001099 | http://genomevolution.org/r/26he | No Gene Identified by Maizesequence.org
zcn17 | 2 | phosphatidylethanolamine-binding protein17 |  | [NAME] | EU241932 | chr2 | 1 | GRMZM2G075215 |  | Good | http://genomevolution.org/r/25ke |  | too big a gap | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/25kf | No Gene Identified by Maizesequence.org
zcn18 | 2 | phosphatidylethanolamine-binding protein18 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203937 | EU241933 | chr2 | -1 | GRMZM2G158809 | 2 | Good | http://genomevolution.org/r/25tn |  | GRMZM2G440005 | Sb02g029725 | PAC:18183028 | Os09g33850 | Bradi4g35040 | http://genomevolution.org/r/25to | No Gene Identified by Maizesequence.org
zcn19 | 2 | phosphatidylethanolamine-binding protein19 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203938 | EU241934 | chr10 | 1 | GRMZM2G062052 | 2 | Good | http://genomevolution.org/r/25j0 |  | GRMZM2G021560 | Sb06g020850 | PAC:18205005 | Os04g41130 | Bradi5g14010 | http://genomevolution.org/r/25j1 | No Gene Identified by Maizesequence.org
zcn2 | 2 | phosphatidylethanolamine-binding [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203921 | EU241893 | chr4 | -1 | GRMZM2G156079 | 2 | Good | http://genomevolution.org/r/25t9 |  | too big a gap | too big a gap | too big a gap | no synteny | too big a gap | [NAME] | No Gene Identified by Maizesequence.org
zcn20 | 2 | phosphatidylethanolamine-binding protein20 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203939 | EU241935 | chr10 | -1 | AC214791.2_FG002 | 1 | 3' UTR unannotated | http://genomevolution.org/r/25c6 |  | chr3:98149258-98563013 | Sb08g008180 | PAC:18189902 | no synteny | Bradi4g39730 | http://genomevolution.org/r/26ez | No Gene Identified by Maizesequence.org
zcn3 | 2 | phosphatidylethanolamine-binding protein3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203922 | EU241919 | chr10 | -1 | GRMZM2G338454 | 1 | 5' end of gene lost in a gap | http://genomevolution.org/r/25wt |  | GRMZM2G092008 | Sb08g003210 | PAC:18199896 | Os12g05590 | Bradi4g42400 | [NAME] | No Gene Identified by Maizesequence.org
zcn4 | 2 | phosphatidylethanolamine-binding protein4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203923 | EU241920 | chr2 | 1 | GRMZM2G075081 | 1 | Good | http://genomevolution.org/r/25kc |  | AC217051.3_FG006 | Sb06g015490 | PAC:18205441 | Os04g33570 | Bradi5g09270 | http://genomevolution.org/r/25kd | No Gene Identified by Maizesequence.org
zcn5 | 2 | phosphatidylethanolamine-binding protein5 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203924 | EU241921 | chr10 | -1 | AC217051.3_FG006 | 2 | Good | http://genomevolution.org/r/25c8 |  | GRMZM2G075081 | Sb06g015490 | PAC:18205441 | Os04g33570 | Bradi5g09270 | http://genomevolution.org/r/25c9 | No Gene Identified by Maizesequence.org
zcn6 | 2 | phosphatidylethanolamine-binding protein6 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203925 | EU241922 | chr4 | -1 | GRMZM2G132880 | 1 | Good | http://genomevolution.org/r/25qw |  | chr2:143622820-143831336 | Sb05g003200 | PAC:18199896 | Os11g05470 | no synteny | http://genomevolution.org/r/25qx | No Gene Identified by Maizesequence.org
zcn7 | 2 | phosphatidylethanolamine-binding protein7 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203926 | EU241923 | chr6 | -1 | GRMZM2G141756 | 1 | Good | http://genomevolution.org/r/25rp |  | GRMZM2G179264 | Sb09g025760 | chr9:24878273-25379792 | Os05g44180 | Bradi2g19670 | http://genomevolution.org/r/26hn | No Gene Identified by Maizesequence.org
zcn8 | 2 | phosphatidylethanolamine-binding protein8 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203927 | EU241924 | chr8 | -1 | GRMZM2G179264 | 2 | Good | http://genomevolution.org/r/25vn |  | GRMZM2G141756 | Sb09g025760 | chr9:24868795-25552370 | Os05g44180 | Bradi2g19670 | http://genomevolution.org/r/26ic | No Gene Identified by Maizesequence.org
zcn9 | 2 | phosphatidylethanolamine-binding protein9 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1203928 | EU241925 | chr8 | 1 | GRMZM2G021614 | 2 | Good | http://genomevolution.org/r/25fi |  | GRMZM2G152689 | Sb03g008270 | PAC:18178661 | Os01g02120 | Bradi2g01020 | http://genomevolution.org/r/25fj | No Gene Identified by Maizesequence.org
add1 | 1 | alternative [NAME] | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=910081 | FJ469779 |  |  | GRMZM2G120178-GRMZM2G050800 | 2 | Gene split by maizesequence.org|exons completely lost | http://genomevolution.org/r/25q4 |  | no synteny | Sb09g003830 | no synteny | Os05g05710 | Bradi2g35810 | http://genomevolution.org/r/269d | No Gene Identified by Maizesequence.org
apt1 | 1 | aberrant pollen transmission1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=9018755 | DQ020097 | chr9 | -1 | GRMZM2G448687 | 2 | Good | http://genomevolution.org/r/25z1 |  | chr1:60350962-60857703 | Sb01g035230 | PAC:18195814 | Os03g23030 | Bradi1g62280 | http://genomevolution.org/r/25z2 | GRMZM2G448687 | Identical Assignment
conz1 | 1 | constans1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=983648 | EU098139 | chr9 | 1 | GRMZM2G405368 | 1 | Good | http://genomevolution.org/r/25yf | GRMZM2G545607 | chr6:118739516-118902996 | Sb10g010050 | PAC:18199176 | Os06g16370 | Bradi1g43670 | http://genomevolution.org/r/26it | No Gene Identified by Maizesequence.org
[NAME] | 1 | diacyglycerol acyltransferase1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1204233 | EU039830 | chr6 | -1 | GRMZM2G169089 | 2 | Good | http://genomevolution.org/r/25up |  | too big a gap | Sb10g022270 | too big a gap | too big a gap | Bradi1g37750 | http://genomevolution.org/r/26i6 | No Gene Identified by Maizesequence.org
dwf1 | 1 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=256276 | AY523572 | chr5 | 1 | GRMZM2G057000 | 1 | Good | http://genomevolution.org/r/25ie | GRMZM2G358007 | chr6:81918960-82068734 | Sb10g031090 | PAC:18198324 | no synteny | Bradi1g29520 | http://genomevolution.org/r/25if | GRMZM2G057000 | Identical Assignment
emp4 | 1 | empty pericarp4 | Y | [NAME] | DQ291135 | chr1 | 1 | GRMZM2G092198 | 1 | Good | http://genomevolution.org/r/25ms |  | chr5:9135377-9239999 | Sb01g009420 | PAC:18192321 | Os03g51840 | Bradi1g09990 | http://genomevolution.org/r/26gr | No Gene Identified by Maizesequence.org
hcf106c | 1 | high chlorophyll fluorescence106c |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=124603 | AF237945 | chr10 | -1 | GRMZM2G151529 | 2 | Good | http://genomevolution.org/r/25sf | GRMZM2G002911||GRMZM2G151566||GRMZM2G484851 | GRMZM5G898735 | [NAME] | chr6:18139155-18891551 | chr4:19177617-19798474 | chr5:11253670-11622178 | http://genomevolution.org/r/26hq | No Gene Identified by Maizesequence.org
kan1 | 1 | KANADI1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1219915 | EU935003 | chr1 | -1 | GRMZM2G056400 | 1 | Good | http://genomevolution.org/r/25ic |  | GRMZM2G175827 | Sb07g020820 | PAC:18186024 | Os08g33050 | Bradi3g36260 | http://genomevolution.org/r/25id | GRMZM2G056400 | Identical Assignment
kan3 | 1 | kanadi3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1219917 | EU925399 | chr4 | 1 | GRMZM2G175827 | 2 | Good | http://genomevolution.org/r/25vb |  | GRMZM2G056400 | Sb07g020820 | PAC:18186024 | Os08g33050 | Bradi3g36260 | http://genomevolution.org/r/25vc | GRMZM2G175827 | Identical Assignment
[NAME] | 1 | knotted interacting protein1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1167526 | AY082396 | chr1 | 1 | GRMZM2G163761 | 1 | Good | http://genomevolution.org/r/25u3 | GRMZM2G011588 | GRMZM2G011588 | Sb01g011970 | PAC:18191569 | Os03g47730 | Bradi1g12510 | http://genomevolution.org/r/26bb | GRMZM2G163761 | Identical Assignment
lec1 | 1 | leafy cotyledon | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=854841 | AF410176 | chr5 | -1 | GRMZM2G011789 | 1 | Good | http://genomevolution.org/r/25e0 |  | GRMZM2G124663 | Sb04g029350 | PAC:18170907 | Os02g49370 | Bradi3g56400 | http://genomevolution.org/r/25e1 | No Gene Identified by Maizesequence.org
phyC1 | 1 | phytochromeC1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=978953 | AY234829 | chr1 | -1 | GRMZM2G057935 | 1 | Good | http://genomevolution.org/r/25ik | GRMZM2G357074 | GRMZM2G129889 | Sb01g007850 | PAC:18193188 | Os03g54084 | Bradi1g08400 | http://genomevolution.org/r/25il | No Gene Identified by Maizesequence.org
phyC2 | 1 | phytochromeC2 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=978954 | AY234830 | chr5 | -1 | GRMZM2G129889 | 2 | Good | http://genomevolution.org/r/25qq |  | GRMZM2G057935 | Sb01g007850 | PAC:18193188 | Os03g54084 | Bradi1g08400 | http://genomevolution.org/r/25qr | No Gene Identified by Maizesequence.org
Smh1 | 1 | [NAME] |  | [NAME] | AY271659 | chr8 | 1 | GRMZM2G136887 | 2 | Good | http://genomevolution.org/r/25r8 |  | GRMZM2G087817 | Sb03g026470 | PAC:18176862 | Os01g40670 | Bradi2g42240 | http://genomevolution.org/r/25r9 | No Gene Identified by Maizesequence.org
Smh3 | 1 | [NAME] Histone3 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=894670 | AY280629 | chr8 | 1 | GRMZM2G023667 | 2 | Good | http://genomevolution.org/r/25fk |  | GRMZM2G108318 | Sb03g032540 | PAC:18175080 | Os01g51170 | Bradi2g47830 | http://genomevolution.org/r/25fl | No Gene Identified by Maizesequence.org
Smh4 | 1 | [NAME] Histone4 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=887785 | AY280631 | chr3 | -1 | GRMZM2G108424 | 1 | Good | http://genomevolution.org/r/25oe |  | GRMZM2G023667 | Sb03g032530 | PAC:18175376 | Os01g51154 | Bradi2g47820 | http://genomevolution.org/r/25of | GRMZM2G108424 | Identical Assignment
Smh5 | 1 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=894672 | AY280630 | chr3 | -1 | GRMZM2G163291 | 1 | Good | http://genomevolution.org/r/25u1 |  | chr8:15552984-15838810 | Sb03g005080 | PAC:18177262 | chr1:2844116-3337953 | too big a gap | http://genomevolution.org/r/26i1 | No Gene Identified by Maizesequence.org
Smh6 | 1 | [NAME] |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=894673 | AY280632 | chr5 | 1 | GRMZM2G095239 | 2 | Good | http://genomevolution.org/r/25n0 |  | chr1:251113046-251435664 | Sb01g013670 | PAC:18192353 | no synteny | Bradi1g13880 | http://genomevolution.org/r/25n1 | GRMZM2G095239 | Identical Assignment
spi1 | 1 | sparse inflorescence1 | Y | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=1219936 | EU910940 | chr3 | -1 | GRMZM2G025222 |  | 5' end of CDS lost in gap | http://genomevolution.org/r/25fs |  | no synteny | no synteny | no synteny | no synteny | no synteny | http://genomevolution.org/r/25ft | No Gene Identified by Maizesequence.org
tacs1 | 1 | Terminal Acidic SANT 1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=936039 | AY738116 | chr6 | 1 | GRMZM2G111906 | 2 | Good | http://genomevolution.org/r/25ow |  | too big a gap | chr10:59803993-60610533 | chr10:39483926-40026657 | chr6:30308446-31043218 | too big a gap | http://genomevolution.org/r/268r | No Gene Identified by Maizesequence.org
yy1 | 1 | yin-yang1 |  | http://www.maizegdb.org/cgi-bin/displaylocusrecord.cgi?id=904876 | AF142322 | chr4 | 1 | GRMZM2G140016 | 2 | Good | [NAME] |  | GRMZM5G885700 | Sb04g022470 | PAC:18171413 | Os02g34680 | Bradi3g45590 | http://genomevolution.org/r/25rm | No Gene Identified by Maizesequence.org
Smh2 | 1 | [NAME] |  |  |  | chr3 | 1 | GRMZM2G087817 | 1 | No GenBank Record|personal communication | http://genomevolution.org/r/25m2 |  | GRMZM2G136887 | Sb03g026470 | PAC:18176862 | Os01g40670 | Bradi2g42240 | http://genomevolution.org/r/25m3 | No Gene Identified by Maizesequence.org
Sun1 | 1 | sad1-unc84-like 1 CCSD type |  |  | EU964563 | chr5 | -1 | GRMZM2G109818 | 1 | personal communication | http://genomevolution.org/r/25ok |  | chr4:235274541-235384107 | Sb04g005160 | PAC:18172790 | chr2:4152195-4473675 | chr3:3981702-4275327 | http://genomevolution.org/r/26h3 | No Gene Identified by Maizesequence.org
Sun2 | 1 | sad1-unc84-like 2 CCSD type |  |  | BT055722 | chr3 | 1 | GRMZM2G440614 | 1 | personal communication | http://genomevolution.org/r/25yx |  | chr8:3612446-3846039 | Sb03g010590 | PAC:18176774 | Os01g16220 | Bradi2g09990 | http://genomevolution.org/r/25yy | No Gene Identified by Maizesequence.org
Sun4 | 1 | sad1-unc84-like 4 PM3 type |  |  | GU453173 | chr8 | 1 | GRMZM2G005483 | 2 | personal communication | http://genomevolution.org/r/25de |  | GRMZM2G120262 | Sb03g041510 | PAC:18180035 | Os01g65520 | Bradi2g56660 | http://genomevolution.org/r/25df | No Gene Identified by Maizesequence.org
Sun4 | 1 | sad1-unc84-like 5 PM3 type |  |  | EU953247 | chr8 | 1 | AC194341.4_FG003 | 2 | personal communication | http://genomevolution.org/r/25bm |  | chr3:223040226-223147269 | Sb03g026980 | too big a gap | Os01g41600 | Bradi2g42670 | http://genomevolution.org/r/26ev | No Gene Identified by Maizesequence.org