Spreadsheet: 58d142e2-b914-45cd-8ec8-a4846a5b9fdd
Sheet: Sheet1

Table S3: Maize miRNA genes mapped to maize genome | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10
Family | miRNA Genes | 5' RACE | 3' RACE | RACE introns | pri-miRNA start | pri-miRNA end | full-length cDNA match |  | RACE length | FLcDNA length
miR156 | [NAME] | 0 | 1 | 31946228-31946514 | 31946109 | 31946864 | BT062408.1:loc:31945508-31950147:introns:31945782-31946517,31946862-31949721:FLCDNA maps with 2 introns, pre-miRNA falls within intron | BT085584.1:loc:31945526-31950325:introns:31945782-31949721:FLCDNA maps with 1 intron, pre-miRNA falls within intron
miR156 | [NAME] | 3 | 1 |  | 177293310 | 177293921 |  |  | 612
miR156 | [NAME]/b | 2 | 1 | 7602834-7602927 | 7601546 | 7603350 |  |  | 1711
miR156 | [NAME] | 2 | 0 |  | 91198579 | 91198772
miR156 | [NAME] | 0 | 0 |  | 0 | 0
miR156 | [NAME] | 0 | 0 |  | 91652134 | 91652342
miR156 | [NAME] | 0 | 0 |  | 183046772 | 183046959
miR156 | [NAME] | 0 | 0 |  | 0 | 0
miR156 | [NAME] | 1 | 0 |  | 110563486 | 110563832
miR156 | [NAME] | 1 | 0 |  | 124932111 | 124932363
miR156 | [NAME] | 0 | 0 |  | 0 | 0 | EU977076.1:loc:128171714-128173358:introns:128171861-128171987,128172179-128173046:FLCDNA maps with 2 introns, pre-miRNA falls within intron
miR159 | [NAME] | 0 | 0 |  | 0 | 0
miR159 | [NAME] | 1 | 1 |  | 2710473 | 2711061 |  |  | 588
miR159 | [NAME] | 0 | 1 |  | 25135872 | 25136698
miR159 | [NAME]g | 0 | 0 |  | 0 | 0
miR159 | [NAME] | 2 | 3 | 10509546-10509636 | 10508486 | 10509873 | BT034981.1:loc:10508516-10509885 |  | 1343 | 1369
miR159 | [NAME] | 0 | 0 |  | 0 | 0
miR159 | [NAME] | 0 | 0 |  | 0 | 0 | EU947090.1:loc:10648278-10649249 |  |  | 985
miR159 | [NAME] | 0 | 0 |  | 0 | 0
miR159 | [NAME] | 0 | 0 |  | 0 | 0
miR159 | [NAME] | 0 | 0 |  | 0 | 0
miR159 | [NAME] | 0 | 1 |  | 31783499 | 31783915
miR160 | [NAME] | 0 | 1 |  | 282533654 | 282534041
miR160 | [NAME] | 0 | 0 |  | 0 | 0
miR160 | [NAME] | 1 | 1 |  | 242019138 | 242019940 | BT068739.1:loc:242019147-242020112 |  | 803 | 965
miR160 | [NAME] | 2 | 1 |  | 42358687 | 42359424 | BT084457.1:loc:42358141-42359410:FLCDNA maps to 2 regions |  | 733 | 1269
miR160 | [NAME] | 1 | 0 |  | 9243356 | 9243580
miR160 | [NAME]g | 0 | 0 |  | 0 | 0
miR160 | [NAME] | 0 | 0 |  | 0 | 0 | BT084457.1:loc:55324847-55326116:FLCDNA maps to 2 regions |  |  | 1269
miR162 | [NAME] | 3 | 1 |  | 181256320 | 181257009 | BT061256.1:loc:181254141-181256921 |  | 690 | 2780
miR164 | [NAME] | 0 | 0 |  | 0 | 0
miR164 | [NAME] | 1 | 0 |  | 213615094 | 213615288
miR164 | [NAME] | 0 | 0 |  | 0 | 0
miR164 | [NAME]g | 0 | 0 |  | 0 | 0
miR164 | [NAME] | 1 | 0 |  | 141804572 | 141804756
miR164 | [NAME] | 1 | 2 | 153498980-153499050 153498980-153499050 | 153498317 | 153499438 |  |  | 1050
miR164 | [NAME] | 1 | 1 |  | 167014425 | 167015059
miR164 | [NAME] | 0 | 0 |  | 0 | 0
[NAME] | [NAME]g | 1 | 2 | 13498311-13500506 | 13497931 | 13500794 |  |  | 668
[NAME] | [NAME] | 1 | 2 |  | 222884052 | 222884884 | BT038999.1:loc:222883541-222884947 | EU968522.1:loc:222884081-222884520 | 833 | 1406/455
[NAME] | [NAME] | 0 | 0 |  | 0 | 0
[NAME] | [NAME] | 0 | 0 |  | 0 | 0
[NAME] | [NAME] | 0 | 0 |  | 0 | 0
[NAME] | [NAME] | 0 | 0 |  | 0 | 0
[NAME] | zma-MIR166n | 0 | 0 |  | 0 | 0 | BT056134.1:loc:177223822-177225956 |  |  | 2134
[NAME] | zma-MIR166d | 0 | 0 |  | 0 | 0 | EU945393.1:loc:21810923-21811994:introns:21811724-21811724:1bp deletion |  |  | 1094
[NAME] | [NAME]/m | 1 | 1 |  | 209829613 | 209830976 |  |  | 1364
[NAME] | [NAME] | 2 | 1 |  | 83064576 | 83065343
[NAME] | [NAME] | 1 | 3 |  | 119086648 | 119087128 |  |  | 481
miR167 | [NAME] | 0 | 0 |  | 0 | 0
miR167 | [NAME] | 2 | 4 | 286641745-286642015 286641738-286642015 | 286640843 | 286643014 |  |  | 1901
miR167 | [NAME] | 1 | 1 |  | 115392569 | 115393203
miR167 | [NAME]g | 1 | 0 |  | 115394766 | 115394969 | BT062276.1:loc:115394776-115395904 |  |  | 1128
miR167 | [NAME] | 0 | 1 |  | 190318502 | 190318803 |  |  | 1054
miR167 | [NAME] | 0 | 1 |  | 4293637 | 4293831
miR167 | [NAME] | 1 | 1 |  | 7648700 | 7649176 |  |  | 477
miR167 | [NAME] | 1 | 0 |  | 92212936 | 92213271
miR167 | [NAME] | 0 | 1 | 9698423-9698684 | 9698229 | 9698824
miR167 | [NAME] | 1 | 1 | 107222050-107222186 | 107221890 | 107222458 |  |  | 432
miR168 | [NAME] | 1 | 1 |  | 244716432 | 244717744 | BT053999.1:loc:244715130-244717730 |  | 1313 | 2600
miR168 | [NAME] | 0 | 0 |  | 0 | 0 | EU941226.1:loc:73635305-73637131 | BT069329.1:[NAME] |  | 1845/1780
miR169 | [NAME] | 0 | 0 |  | 0 | 0
miR169 | [NAME] | 1 | 4 |  | 189774333 | 189775522 |  |  | 1190
miR169 | [NAME] | 1 | 1 |  | 11193297 | 11193867 | EU946986.1:loc:11192983-11193860:introns:11193253-11193535:FLCDNA maps with 1 intron, pre-miRNA falls within exon | BT060668.1:loc:11192692-11193844 | 571 | 609/1152
miR169 | zma-MIR169a | 2 | 2 |  | 37277644 | 37278499 |  |  | 856
miR169 | [NAME]m | 0 | 0 |  | 0 | 0
miR169 | [NAME] | 0 | 0 |  | 0 | 0
miR169 | [NAME] | 0 | 0 |  | 0 | 0 | EU941000.1:loc:12849076-12850149:introns:12849399-12849516:FLCDNA maps with 1 intron, pre-miRNA falls within exon |  |  | 974
miR169 | [NAME] | 0 | 2 | 47028677-47028784 | 47028546 | 47029236
miR169 | zma-MIR169d | 0 | 0 |  | 0 | 0
miR169 | [NAME] | 0 | 0 |  | 0 | 0
miR169 | [NAME] | 0 | 0 |  | 0 | 0
miR169 | [NAME] | 1 | 1 | 129971147-129971550 | 129970704 | 129971835 | EU968670.1:loc:129970845-129971835:introns:129971150-129971549:FLCDNA maps with 1 intron, pre-miRNA falls within exon |  | 728 | 642
miR169 | [NAME] | 1 | 4 |  | 4766254 | 4766881 |  |  | 628
miR169 | [NAME] | 0 | 0 |  | 0 | 0
miR169 | [NAME] | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 1 | 3 |  | 7917386 | 7918407 |  |  | 1022
miR171 | [NAME] | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 0 | 1 | 272306705-[PHONE] | 272306563 | 272307512
miR171 | [NAME] | 1 | 1 |  | 8870826 | 8871601 |  |  | 776
miR171 | [NAME] | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 1 | 2 |  | 8565805 | 8566338 | BT069726.1:loc:8565816-8567382 |  | 534 | 1566
miR171 | [NAME]m | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 1 | 0 |  | 121888951 | 121889129 | EU940714.1:loc:121887905-121889129:introns:121888239-121888387:FLCDNA maps with 1 intron, pre-miRNA falls within exon |  |  | 1092
miR171 | [NAME] | 2 | 2 |  | 43935472 | 43936175 | BT035609.1:loc:43935416-43936654 |  | 704 | 1238
miR171 | [NAME] | 0 | 0 |  | 0 | 0
miR171 | [NAME] | 1 | 0 |  | 142605743 | 142605944
miR-172 | [NAME] | 4 | 4 |  | 170216351 | 170217928 |  |  | 1578
miR-172 | [NAME] | 0 | 0 |  | 0 | 0
miR-172 | [NAME] | 1 | 2 |  | 169045432 | 169046728 |  |  | 1297
miR319 | [NAME] | 2 | 0 |  | 2764156 | 2764411 | BT055430.1:loc:2764180-2765535 |  |  | 1355
miR319 | [NAME] | 1 | 0 |  | 210557478 | 210557938
miR319 | [NAME] | 0 | 6 |  | 146885410 | 146886264
miR319 | [NAME] | 0 | 2 |  | 31728085 | 31728852
miR390 | [NAME] | 0 | 0 |  | 0 | 0
miR390 | [NAME] | 0 | 0 |  | 0 | 0
miR393 | [NAME] | 0 | 0 |  | 0 | 0
miR393 | [NAME] | 1 | 4 | 736701-736994 736701-736994 736701-736994 736701-736994 | 736428 | 737348 |  |  | 627
miR393 | [NAME] | 0 | 0 |  | 0 | 0
miR394 | [NAME] | 1 | 3 |  | 153293216 | 153294215 | [NAME]:loc:153292968-153294214 |  | 1000 | 1246
miR394 | [NAME] | 1 | 1 |  | 193296354 | 193296610 |  |  | 254
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME]g | 0 | 0 |  | 0 | 0
miR395 | zma-MIR395h | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | zma-MIR395k | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME]m | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR395 | [NAME] | 0 | 0 |  | 0 | 0
miR396 | [NAME] | 0 | 0 |  | 0 | 0
miR396 | [NAME] | 2 | 0 |  | 172385737 | 172385961 | EU941272.1:loc:172385771-172386482 |  |  | 728
miR396 | [NAME] | 0 | 0 |  | 0 | 0
miR396 | [NAME] | 0 | 0 |  | 0 | 0
miR396 | [NAME]g | 0 | 0 |  | 0 | 0
miR396 | zma-MIR396b | 1 | 1 |  | 15254195 | 15254621 |  |  | 427
miR396 | [NAME] | 0 | 0 |  | 0 | 0 | BT041660.1:loc:147441735-147445720:introns:147442186-147442344,147442544-147442622,147443162-147445528:FLCDNA maps with 3 introns, pre-miRNA falls within exon | EU950590.1:loc:147441724-147442595:introns:147442186-147442344:FLCDNA maps with 1 intron, pre-miRNA falls within exon |  | 1380/730
miR397 | [NAME] | 0 | 0 |  | 0 | 0
miR397 | [NAME] | 0 | 0 |  | 0 | 0
miR398 | [NAME] | 0 | 0 |  | 0 | 0
miR398 | [NAME] | 0 | 0 |  | 0 | 0
miR399 | [NAME] | 1 | 1 |  | 16261956 | 16262359 |  |  | 404
miR399 | [NAME] | 1 | 1 |  | 187460993 | 187461214 |  |  | 222
miR399 | [NAME] | 1 | 0 |  | 234244973 | 234245137
miR399 | [NAME] | 1 | 0 |  | 153837696 | 153837817
miR399 | [NAME]g | 0 | 0 |  | 0 | 0
miR399 | [NAME] | 0 | 0 |  | 0 | 0
miR399 | [NAME] | 0 | 0 |  | 0 | 0
miR399 | [NAME] | 1 | 1 | 159806475-159807330 159807445-159807773 | 159806270 | 159808180 |  |  | 726
miR399 | [NAME] | 1 | 2 |  | 159815709 | 159816545 |  |  | 837
miR399 | [NAME] | 0 | 0 |  | 0 | 0
miR408 | [NAME] | 0 | 0 |  | 0 | 0 | EU947091.1:loc:38489391-38490183 |  |  | 807
[NAME] | [NAME] | 0 | 0 |  | 0 | 0
[NAME] | [NAME] | 0 | 0 |  | 0 | 0
[NAME] | [NAME] | 0 | 0 |  | 0 | 0
miR529 | [NAME] | 0 | 0 |  | 0 | 0
miR827 | [NAME] | 1 | 0 |  | 166749106 | 166749406 | EU953543.1:loc:166748266-166749228 |  |  | 982
miR1432 | [NAME] | 0 | 0 |  | 0 | 0
 |  |  |  |  |  |  |  | Average | 845 | 1260
The number in Column 5'RACE and 3'RACE are the number of transcripts.
0 means no RACE data.