Spreadsheet: 3be1c235-c711-4330-9486-a68ce199a6df
Sheet: Sheet1

Table S8: Clustering of protein families expanded in P. indica compared to other Basidiomycota | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7
ID | Piri1 | Coci2 | Cryne3 | Labi4 | [NAME] | Pfam annotation6 | Annotated [NAME]
Cluster1 | 387 | 109 | 62 | 294 | 59 | WD40/NACHT | 81.14
Cluster3 | 178 | 1 | 0 | 209 | 1 | NB-Arc/Tpr | 58.62
Cluster2 | 120 | 112 | 83 | 129 | 84 | Pkinase | 95.83
Cluster13 | 87 | 17 | 20 | 19 | 19 | Fungal_trans | 20.69
Cluster8 | 54 | 74 | 1 | 36 | 6 | p450 | 87.04
Cluster64 | 48 | 4 | 0 | 7 | 4 | RVT_2/rve | 66.67
Cluster14 | 45 | 32 | 21 | 32 | 24 | [NAME] | 42.23
Cluster7 | 41 | 33 | 24 | 59 | 25 | [NAME] | 95.12
Cluster98 | 40 | 5 | 1 | 3 | 0 | Methyltransf_11,12,4 | 85
Cluster45 | 38 | 8 | 4 | 19 | 4 | WSC/Glyoxal_oxid_N | 94.74
Cluster85 | 37 | 1 | 0 | 15 | 2 | RVT_1/RnaseH | 78.38
Cluster72 | 35 | 12 | 0 | 12 | 0 | ukn
Cluster17 | 33 | 33 | 16 | 43 | 21 | ABC_membrane/ABC_tran | 84.85
Cluster59 | 33 | 7 | 8 | 6 | 10 | MFS_1 | 81.82
Cluster146 | 33 | 1 | 0 | 3 | 0 | ukn
Cluster21 | 32 | 44 | 4 | 44 | 12 | p450 | 93.75
Cluster31 | 27 | 10 | 0 | 59 | 0 | Pkinase | 81.48
Cluster57 | 27 | 17 | 4 | 12 | 6 | Polysacc_deac_1/LysM | 62.96
Cluster86 | 26 | 11 | 0 | 17 | 0 | ukn
Cluster156 | 26 | 4 | 0 | 4 | 0 | BTB | 70.37
Cluster43 | 25 | 35 | 1 | 13 | 0 | Glyco_hydro_61/CBM_1 | 100
Cluster28 | 23 | 23 | 1 | 58 | 1 | WD40/HSP70 | 13.04
Cluster280 | 23 | 0 | 0 | 1 | 0 | ukn
Cluster30 | 20 | 16 | 3 | 53 | 4 | G-alpha | 100
Cluster35 | 20 | 20 | 18 | 19 | 17 | UQ_con/UBA_3 | 100
Cluster66 | 19 | 15 | 4 | 16 | 8 | Peptidase_M16/adh_short | 73.68
Cluster63 | 18 | 19 | 4 | 14 | 8 | COesterase | 94.44
Cluster243 | 18 | 6 | 0 | 0 | 2 | CBM_1/Glyco_hydro_10 | 100
Cluster283 | 17 | 6 | 0 | 0 | 1 | Glyco_hydro_11/CBM_1 | 94.12
Cluster91 | 16 | 11 | 8 | 12 | 4 | Aldo_ket_red | 100
Cluster95 | 15 | 14 | 0 | 20 | 0 | ukn
Cluster198 | 15 | 3 | 6 | 4 | 2 | RTA1 | 100
Cluster79 | 14 | 18 | 5 | 15 | 5 | different | 42.86
Cluster92 | 14 | 28 | 0 | 6 | 3 | Peptidase_M43 | 92.86
Cluster212 | 14 | 8 | 0 | 7 | 0 | PARP/Pkinase | 78.57
Cluster368 | 14 | 3 | 1 | 1 | 1 | DUF1399 | 71.43
Cluster88 | 13 | 8 | 12 | 9 | 10 | Aldo_ket_red | 100
Cluster108 | 13 | 8 | 8 | 9 | 9 | Arf | 100
Cluster100 | 12 | 13 | 6 | 14 | 4 | Glyco_hydro_16 | 66.67
Cluster104 | 12 | 8 | 8 | 13 | 7 | HSP70 | 83.33
Cluster110 | 12 | 10 | 7 | 9 | 9 | RhoGAP/RasGEF | 91.67
Cluster133 | 12 | 10 | 4 | 8 | 6 | Ricin_B_lectin | 33.33
Cluster185 | 12 | 8 | 1 | 9 | 1 | Peptidase_M36/LysM/PepSY | 100
Cluster308 | 12 | 5 | 2 | 4 | 0 | F-box | 58.33
Cluster364 | 12 | 7 | 0 | 0 | 1 | CBM_1/Esterase_phd | 91.67
Cluster101 | 11 | 7 | 5 | 20 | 6 | GTP_EFTU/EFG_IV/EFG_C | 100
Cluster103 | 11 | 9 | 8 | 12 | 8 | Metallophos | 100
Cluster106 | 11 | 9 | 8 | 8 | 12 | HATPase_c/Response_reg/HisKA | 90.91
Cluster117 | 11 | 8 | 8 | 10 | 8 | Cpn60_TCP1 | 90.91
Cluster153 | 11 | 19 | 0 | 5 | 0 | ukn
Cluster159 | 11 | 0 | 0 | 23 | 0 | ukn
Cluster211 | 11 | 5 | 4 | 5 | 4 | Chitin_synth_1 | 54.55
Cluster263 | 11 | 8 | 0 | 6 | 0 | Pkinase | 27.27
Cluster543 | 11 | 1 | 1 | 1 | 1 | ATP_transf/WD40/Esterase_phd | 33.33
Cluster592 | 11 | 1 | 0 | 2 | 0 | [NAME] | 36.36
Cluster653 | 11 | 1 | 0 | 1 | 0 | ukn
Cluster107 | 10 | 8 | 10 | 10 | 10 | Kinesin | 100
Cluster111 | 10 | 10 | 9 | 9 | 9 | Syja_N/Exo_endo_phos | 90
Cluster169 | 10 | 8 | 4 | 9 | 2 | RdRP/Na_Ca_ex | 90
Cluster713 | 10 | 1 | 0 | 1 | 0 | MIF | 20
Cluster768 | 10 | 0 | 0 | 1 | 0 | ukn
Protein families were identified using the Tribe-MCL program with standard parameters.
1Piriformospora indica
2Coprinopsis cinerea
3Cryptococcus neoformans
4Laccaria bicolor
5Ustilago maydis
6Listed are those domain(s) that were predominately identified in the specific cluster
7Percentage of proteins of a cluster that contain at least 1 of the Pfam domain(s) listed in the left column
ukn: unknown