Spreadsheet: 1284c255-6f2b-43a3-ac34-1f6e20c54d55
Sheet: Sheet1

Illumina_ProbeId | [NAME] probe identifier
Illumina_Target | Also known as Search key or as [NAME] identifier used by [NAME] during probe design. Same as previous but with the addition of the "-S" suffix code or "-I  or "-A". This complex string with the "|" parsing character encodes many attributes of the probe design and its target and is often used by Illumina and other users as the "name" of the probe.
Gene_ID | NCBI ID of the gene targeted by the probe
Gene_Symbol | [NAME] gene symbol usually given by Mouse Genome Informatics (MGI, JAX)
Gene_Description | [NAME] gene description data with some modifications by [NAME]
Start_Probe | Probe target coordinates in Mb based on NCBI build 36
Chromosome | Chromosome name of the probe
Probe_Position | Gene region targeted by the probe (3’UTR, exon 1, etc…)
SNP_in_Probe | SNPs that overlap the probe sequence. Some redundancy in symbols used. Mostly we have used NCBI dbSNP identifiers, but in some cases we have used Celera mCV idenfiers, Broad identifiers, or Perlegen/NIEHS "NES" identifiers. All data by [NAME], March, 2008.
GN_Probe_Sequence | The 50-mer sequence on the bead listed 5' to 3' with respect to mRNA target
Marker_name | The identifier of the marker with minimum linkage p-value
Marker_Chr | The chromosome of the marker with minimum linkage p-value
Marker_cM | The centi-morgan position of the marker with minimum linkage p-value
Marker_MB | The MB position of the marker with minimum linkage p-value
logp | For specific eQTLs: the –log10(p-value) for the marker with the most significant genotype by cell-type interaction p-value. For consistent eQTLs: the –log10(p-value) for the marker with the most significant genotype main effect p-value.
mean_B6 | Overall mean expression for the probe among the samples from mice carrying the [NAME] allele at the marker with strongest linkage
n_B6 | Number of samples from mice carrying the [NAME] allele at the marker with strongest linkage
mean_DBA2 | Overall mean expression for the probe among the samples from mice carrying the DBA2 allele at the marker with strongest linkage
n_DBA2 | Number of samples from mice carrying the DBA2 allele at the marker with strongest linkage
mean_Expr_Stem_B | Mean expression for the probe among the stem cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
mean_Expr_Stem_D | Mean expression for the probe among the stem cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
mean_Expr_Pro_B | Mean expression for the probe among the progenitor cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
[NAME] | Mean expression for the probe among the progenitor cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
[NAME] | Mean expression for the probe among the erythroid cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
mean_Expr_Red_D | Mean expression for the probe among the erythroid cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
mean_Expr_White_B | Mean expression for the probe among the myeloid cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
mean_Expr_White_D | Mean expression for the probe among the myeloid cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
n_Stem_B | Number of stem cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
n_Stem_D | Number of stem cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
n_Pro_B | Number of progenitor cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
n_Pro_D | Number of progenitor cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
n_Red_B | Number of erythroid cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
n_Red_D | Number of erythroid cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
n_White_B | Number of myeloid cell samples from mice carrying the [NAME] allele at the marker with strongest linkage
n_White_D | Number of myeloid cell samples from mice carrying the DBA2 allele at the marker with strongest linkage
cis_trans | Cis: local regulation, the marker with strongest linkage is located within 10 Mb of the probe target. Trans: distant regulation, the marker with strongest linkage is located more than 10 Mb away from the probe target.