Spreadsheet: af007d9e-75ee-4ac9-891d-6e75700c0755
Sheet: Sheet1

Unnamed: 0 | False | Matching: | Selected: | Variable: | Column: | Worksheet: | Experiment | BegIndex: | EndIndex: | Experiment Names | arstype00 | type | original
InputFilePath | C:\WorkOPenDB\TCGA2ndWave -Project254\Output\expression\ARS vs CAG\Renorm ARS vs CAG -Project\TempSeparateFilesFolder1 | True | True | Unique id | 1 |  | 213672 |  |  | 213672 | MARS | 1 | 213672_at
InputFileName | matrix ARS vs CAG final (renorm).txt | False | False | Clone |  |  | 213671 |  |  | 213671 | MARS | 1 | 213671_s_at
NumHeaders | 1 | False | False | Description |  |  | 202042 |  |  | 202042 | HARS | 2 | 202042_at
[NAME] | 2 | False | False | [NAME] acc |  |  | 200841 |  |  | 200841 | EPRS | 3 | 200841_s_at
Version | 3.8.1 | False | False | UG cluster |  |  | 201475 |  |  | 201475 | MARS | 1 | 201475_x_at
cbOuputWkbk | Project.xls | False | False | Gene symbol |  |  | 213907 |  |  | 213907 | AIMP3 | 1 | 213907_at
ExpChunkSize | 15 | False | False |  |  |  | 212048 |  |  | 212048 | YARS | 1 | 212048_s_at
ExpDescriptorsFilePath | C:\WorkOPenDB\TCGA2ndWave -Project254\Output\expression\ARS vs CAG | False | False | Probe set |  |  | 200842 |  |  | 200842 | EPRS | 1 | 200842_s_at
ExpDescriptorsFileName | ExpDescFile.xls | True |  | ckBkgAdj |  |  | 200843 |  |  | 200843 | EPRS | 1 | 200843_s_at
iDialogType | 5.1 |  | False | Red intensity |  |  | 201624 |  |  | 201624 | [NAME] | 2 | 201624_at
NumExp | 36 |  | False | Green intensity |  |  | 216602 |  |  | 216602 | FARSA | 3 | 216602_s_at
NumVariables |  |  | False | Red background |  |  | 200802 |  |  | 200802 | SARS | 2 | 200802_at
NumExpDescriptors | 4 |  | False | Green background |  |  | 202159 |  |  | 202159 | FARSA | 1 | 202159_at
NumUniqueGenes | 168 |  | False | Sd. of red background |  |  | 202402 |  |  | 202402 | CARS | 2 | 202402_s_at
ColumnExp |  |  | False | Sd. of green background |  |  | 201330 |  |  | 201330 | RARS | 3 | 201330_at
NumCols | 1 |  | False | Spot flag |  |  | 201797 |  |  | 201797 | VARS | 1 | 201797_s_at
NumIdCols | 2 |  | False | Spot size |  |  | 217846 |  |  | 217846 | QARS | 1 | 217846_at
IdPosition | 1 |  | False | Number of red pixels |  |  | 200027 |  |  | 200027 | NARS | 1 | 200027_at
FirstBlockCol | 1 |  | False | Number of green pixels |  |  | 201796 |  |  | 201796 | VARS | 3 | 201796_s_at
ckReverseFluor | False |  | False |  |  |  | 200840 |  |  | 200840 | KARS | 1 | 200840_at
ReverseFluorColumn | False |  | False |  |  |  | 201000 |  |  | 201000 | AARS | 2 | 201000_at
ReverseFluorLabel |  |  | True | Raw log ratio | 2 |  | 209971 |  |  | 209971 | AIMP2 | 2 | 209971_x_at
1. ckIntensityFilter | False |  | True | Gene identifiers |  | Gene identifiers | 217810 |  |  | 217810 | [NAME] | 1 | 217810_x_at
2. MinExp |  |  | True | Filtered log ratio |  |  | 202138 |  |  | 202138 | AIMP2 | 2 | 202138_x_at
3. RedThreshold | 10 |  | True | Red (bkg-adjusted) |  |  | 202542 |  |  | 202542 | AIMP1 | 3 | 202542_s_at
4. GreenThreshold | 100 |  | True | Green (bkg-adjusted) |  |  | 201623 |  |  | 201623 | [NAME] | 2 | 201623_s_at
5. opAND | False |  |  | ColumnMatchKey |  |  | 200079 |  |  | 200079 | KARS | 3 | 200079_s_at
6. opOR | False |  | False | GeneIdentifierFile |  |  | 209972 |  |  | 209972 | AIMP2 | 1 | 209972_s_at
7. ckLogRatioFilter | False |  |  | [NAME] | 0 |  | 212971 |  |  | 212971 | CARS | 1 | 212971_at
8. SignifLevel | 0.01 | AlreadyLogTransformed | True | Raw log intensity | 2 | Raw log intensity | 201263 |  |  | 201263 | TARS | 3 | 201263_at
9. ckFlagFilter | False |  | True | Filtered log intensity |  | Filtered log intensity | 208693 |  |  | 208693 | GARS | 2 | 208693_s_at
10. FlagMinimum | False |  |  | GeneIdColumnKey |  |  | 200628 |  |  | 200628 | WARS | 3 | 200628_s_at
11. FlagMaximum | False |  |  | AlignGeneId | 1 |  | 204744 |  |  | 204744 | IARS | 2 | 204744_s_at
12. ChangedIntensity | False |  | False | Entered log-ratios |  |  | 200629 |  |  | 200629 | WARS | 3 | 200629_at
13. ChangegdLogRatio | False | RedoGOExpected | ResendFilterData | BinaryDataSignature: | 8197377 | 9878504 | 202541 |  |  | 202541 | AIMP1 | 2 | 202541_at
14. ChangedFlag | False |  |  | cbGeneChips |  |  | 204905 |  |  | 204905 | AIMP3 | 2 | 204905_s_at
15. ckNormalize | False |  | False | IsAffy
16. ChangedNormalize | False |  |  | IsPivotTable | 0
17. opSignifLevel | 1 |  | False | ckCodeLink
18. Percentile | 75 |  |  | LatestVersionUsed | 3.8.1 - stable Release
19. DataWkbkName | Project.xls |  |  | LocusLink
20. ckMissingValueFilter | False |  |  | SwissProt
21. TextBoxPercentMissing | 50 |  |  | Ensembl ID
22. ChangedMissing | False |  |  | References
23. ckSizeFilter | False |  |  | Bilogical Process (GO)
24. [NAME] | 10 |  |  | Cellular Component (GO)
25. ChangedSize | False |  |  | Molecular Function (GO)
26. ckLogTransform | 1 |  |  | PrintTipGroup
27. ckTruncate | False |  |  |  | 0
28. TextBoxTruncate | 10000
29. ChangedTruncate | False
30. IsSingleChannel | 1
31. [NAME] | 1
32. ckFlagRange | 1
33. ckFlagListValues | False
34. TextBoxFlagListValues
35. opNormalizeMedian | 1
36. opNormalizeLowess | False
37. ReadFromRaw | False
38. PreviousRunSuccessful | 1
39. opNormalizeHousekeeping | False
40. opU133 | 1
41. opU95 | False
42. opSpecifyGenelist | False
43. TextBoxHousekeepingGenes
44. ckFoldDiffFilter | False
45. TextBoxPercentAboveFoldDiff | 20
46. TextBoxFoldDiff | 1.5
47. ChangedFoldDiff | False
48. ckDetectionCallFilter | False
49. TextBoxPercentAbsent | 50
50. ChangedDetection | False
51. ckNormalizeUsingMedianArray | 1
52. cbUserSelectedReferenceArray
53. ckGeneLabelFilter | False
54. cbGeneId
55. TextBoxGeneLabel | Empty
56. ChangedGeneLabelFilter | False
57. ckGeneSubsets | 1
58. opUseSelected | 1
59. opUseAllExceptSelected | False
60. ChangedGeneSubsets | False
61.opNormalizeMedianPrintTip | False
62.opNormalizeLowessPrintTip | False
63.opBiocartaHuman | User Gene List
 | False