Spreadsheet: 9eec1007-72c8-477e-9bc1-732a6c218452
Sheet: Sheet1

[NAME]. [NAME] | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | [NAME]. 3UTR | Unnamed: 5 | Unnamed: 6 | putative ortholog D. pseudo. 3UTR | Unnamed: 8 | Unnamed: 9 | [NAME]. 3UTR seq locatoin in genome | Unnamed: 11 | Unnamed: 12
gene | name | FBgn | transcripts | length | matrix hits | putative polyA signal | length | matrix hits | putative polyA signal | coordinates | strand | chr
CG10617 | CG10617 | FBgn0030476 | CG10617-RA | 2223 | 8.345(886)a2, 7.667(1882) | AATAAA(13) | 2358 | 10.04(459),8.345(1103) | AATAAA(89) | 13096618-13098840, | + | chrX
CG11059 | calsyntenin-1 | FBgn0039928 | CG11059-RA_RB | 652 | 8.873(140)n, 8.873(203)n, 7.72(566)n | AATAAA(93) |  | NO_SEQ |  | 1134646-1135297, | - | chr4
CG1210 | Pk61C | FBgn0020386 | CG1210-RA_RB_RC_RD_RE_RF_RG_RH | 1488 | 9.798(882)n, 10.97(901)n, 9.799(1013)n | AATAAA(32) |  | NO_SEQ |  | 124448-125935, | + | chr3L
CG12223 | Dsp1 | FBgn0011764 | CG12223-RA_RB_RC | 1089 | 10.97(44), 7.67(508) | ATTAAA(31) | 759 | NO_HIT | ATTAAA(60) | 16068824-16069912, | + | chrX
CG12348 | Sh | FBgn0003380 | CG12348-RB | 1134 | 8.349(124)a1, 9.799(612)a2 | ATTAAA(34) | 1238 | 8.349(124),9.799(605) | [NAME]) | 17660000-17660662,17661076-17661396,17661545-17661694, | - | chrX
CG14994 | [NAME] | FBgn0004516 | CG14994-RA_RB_RC | 1299 | 8.872(730), 8.595(950) | AATAAA(22) | 1279 | 8.872(1134) | AATAAA(22) | 4054698-4055996, | - | chr3L
CG1522 | cac | FBgn0005563 | CG1522-RA | 2362 | 8.873(1015), 8.87(1392) | NO_POLYA_SIG | 2749 | 9.119(940) | NO_POLYA_SIG | 11664344-11666705, | - | chrX
CG1725 | dlg1 | FBgn0001624 | CG1725-RA_RD | 1572 | 9.8(367)a2, 10.97(1491)a4, 8.872(1529)a5 | AATATA(11) | 1778 | 10.72(44),9.8(263),8.872(950),10.72(1707),8.872(1735) | AATATA(11) | 11148115-11149686, | + | chrX
CG1725 | dlg1 | FBgn0001624 | CG1725-RC | 1120 | 8.59(277), 8.59(783), 10.04(793) | ATTAAA(70) | 613 | 7.67(467) | AATATA(13) | 11130111-11131230, | + | chrX
CG17870 | 14-3-3zeta | FBgn0004907 | CG17870-RA_RB_RC_RD_RE_RG | 2068 | 10.04(275), 7.67(1451)a4, 9.8(1680)a6 | AATAAA(13) | 2473 | 8.872(568),8.349(1063),7.719(1138),7.67(1458),8.873(1643),9.8(1761) | ATTAAA(40) | 5168253-5170320, | + | chr2R
CG17870 | 14-3-3zeta | FBgn0004907 | CG17870-RF | 2228 | 10.04(435), 7.67(1611)a4, 9.8(1840)a6 | AATAAA(13) | 2633 | 8.872(728),8.349(1223),7.719(1298),7.67(1618),8.873(1803),9.8(1921) | ATTAAA(40) | 5167424-5167430,5168100-5170320, | + | chr2R
CG17907 | Ace | FBgn0000024 | CG17907-RA | 1421 | 9.119(751), 8.875(814)a1, 9.798(1265)o3, 9.119(1351) | ATTAAA(28) | 1714 | 8.875(927),8.872(1439),9.798(1555) | ATTAAA(32) | 9053981-9055401, | - | chr3R
CG18445 | CG18445 | FBgn0033476 | CG18445-RA | 1184 | 8.345(370)a2, 8.346(399) | AATAAA(36) | 1355 | 9.118(412),8.347(444),9.8(528) | AATAAA(49) | 5096396-5097579, | - | chr2R
CG3139 | syt | FBgn0004242 | CG3139-RA_RB_RC | 2129 | 10.97(434)a1, 8.875(1196) | ATTAAA(48) | 2208 | 10.97(436) | AATAAA(50) | 2773310-2775408,2775610-2775639, | - | chr2L
CG32490 | complexin | FBgn0041605 | CG32490-RA_RC | 2782 | 8.346(430), 7.667(2689)a2 | AATAAA(37) | 2652 | 9.799(1223),7.667(2546) | AATAAA(57) | 123280-124306,125511-127265, | + | chr3R
CG32490 | complexin | FBgn0041605 | CG32490-RG_RH_RI | 2779 | 8.346(430), 7.667(2689)a2 | AATAAA(34) | 2649 | 9.799(1223),7.667(2546) | AATAAA(54) | 123280-124306,125511-127262, | + | chr3R
CG32508 | shakB | FBgn0003037 | CG32508-RB | 2578 | 8.347(927)a2, 9.8(1176)a3 | NO_POLYA_SIG | 3092 | 7.665(86),8.347(953),9.8(1202) | NO_POLYA_SIG | 20443677-20445188,20445567-20445745,20445806-20445972,20447913-20447977,20448509-20448663,20449481-20449980, | - | chrX
CG3903 | Gli | [NAME] | CG3903-RA_RB_RC_RD_RE | 1032 | 8.873(490)a1, 10.04(609) | AATAAA(13) | 1169 | 8.873(612),7.719(811) | AATAAA(13) | 15734085-15735021,15735088-15735182, | - | chr2L
CG4260 | [NAME] | FBgn0015567 | CG4260-RA | 1369 | 7.665(375)a2, 8.873(641), 8.873(1046)a3 | AATAAA(22) | 1638 | 9.796(207),7.665(476),8.873(1259),10.04(1317),7.667(1433) | AATAAA(22) | 409687-411055, | - | chr2L
CG5393 | apt | FBgn0015903 | CG5393-RA_RB_RC_RD_RE | 1176 | 10.97(688), 7.667(844)a2, 7.718(923), 9.118(1077) | NO_POLYA_SIG | 1364 | 10.04(46),7.667(953) | NO_POLYA_SIG | 18642093-18643268, | + | chr2R
CG6027 | cdi | FBgn0004876 | [NAME] | 1738 | 9.798(223), 8.875(772), 9.796(1310) | AATAAA(24) | 1666 | 10.72(522),9.118(1121) | AATAAA(22) | 14870621-14872358, | - | chr3R
CG6203 | Fmr1 | FBgn0028734 | CG6203-RA_RC_RD_RE | 1821 | 7.666(1030), 8.872(1079) | AATATA(67) | 2007 | 9.119(310),7.666(982) | NO_POLYA_SIG | 5927154-5928974, | - | chr3R
CG6395 | Csp | FBgn0004179 | CG6395-RA | 1979 | 7.666(109)a1, 8.872(1050), 7.666(1242)a2, 9.795(1303), 9.119(1519)a3, 7.666(1561), 7.666(1909) | AATAAA(17) | 2508 | 9.119(123),7.666(1570),9.119(1917),8.347(2011) | AATAAA(44) | 22189046-22191024, | + | chr3L
CG6395 | Csp | FBgn0004179 | CG6395-RB_RC | 1358 | 8.872(429), 7.666(621)a1, 9.795(682), 9.119(898)a2, 7.666(940), 7.666(1288) | AATAAA(17) | 1726 | 7.666(788),9.119(1135),8.347(1229) | AATAAA(44) | 22189667-22191024, | + | chr3L
CG7719 | gwl | FBgn0004461 | CG7719-RA | 367 | 9.795(218), 9.119(277)a2 | AATAAA(27) | 295 | 7.558(67),9.119(220) | AATAAA(6) | 14575741-14576107, | + | chr3R
CG7734 | shn | FBgn0003396 | CG7734-RA_RB_RC | 1202 | 8.872(480), 7.666(835), 7.72(913)a1, 8.875(983)a2, 8.873(1105)a3 | AATAAA(9) | 1386 | 7.72(1081),8.875(1157),8.873(1287) | AATAAA(9) | 6280941-6282142, | + | chr2R
CG8095 | scb | FBgn0003328 | CG8095-RA_RB | 786 | 9.797(281)a1, 8.873(664) | AATAAA(25) | 556 | 9.799(326) | AATAAA(35) | 10321438-10322223, | + | chr2R
CG8118 | mam | FBgn0002643 | CG8118-RA_RB | 2445 | 9.795(7)n, 9.8(716)n, 8.875(1037)n | AATAAA(25) |  | NO_SEQ |  | 9122626-9125070, | + | chr2R
CG8604 | Amph | [NAME] | CG8604-RA | 987 | 7.666(657), 8.873(826) | AATAAA(14) | 1286 | 9.118(1089) | ATTAAA(11) | 7675800-7676786, | + | chr2R
CG9113 | AP-1gamma | FBgn0030089 | CG9113-RA_RB_RC_RD | 257 | 10.97(122)n, 8.873(136)n, 8.349(240)n | NO_POLYA_SIG |  | NO_SEQ |  | 8855244-8855500, | + | chrX
CG9206 | Gl | FBgn0001108 | CG9206-RA | 466 | 8.873(251), 9.797(455) | AATAAA(51) | 579 | 9.119(256) | AATAAA(58) | 13883071-13883536, | + | chr3L
Notations for some columns
FBgn: FlyBase gene ID
transcripts: the transcripts that share the same 3UTR. For example, CG6395-RB_RC means CG6395-RB and CG6395-RC, whose 3UTR are identical.
matrix hits: the sites in the 3UTR sequence whose matrix score is above the threshold 7.5. The format is: score(coordinate). The coordinate corresponds to the first position in the matrix an is referred to the stop codon (the first nucleotide of the stop codon as coordinate 1).
The suffixes in D. mel. matrix hits represent the conservation between D. mel. and D. pseudo. Example: a2 - the predicted site is aligned with the second predicted site in D. pseudo. o1 - the predicted site overlaps with the first predicted site in D. pseudo.  n - correspondent 3'UTR sequence in D. pseudo is not available.
putative polyA signal: the number in the parentheses is the distance to the end of the 3UTR. The presence of a putative polyA signal provides more confidence that the 3UTR is complete.