Spreadsheet: 4d2884c1-8f1b-4467-8aff-74e4e7f3d1ac
Sheet: Sheet1

STable 2: Summary of aCGH data | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8
Isolate # | Genotype | GCR Assay | RDKY | Eventa | Additional Eventsa | Suspected Genomic Rearrangement Locusb | Monocentric Direct/Invertedc | Class
1 | wild type | -Ty | 6088 | del(5)(34684->TEL05R) |  |  | - | I
2 | wild type | -Ty | 6088 | del(5)(34684->TEL05R) |  |  | - | I
3 | wild type | -Ty | 6088 | del(5)(34684->TEL05R) |  |  | - | I
4 | wild type | -Ty | 6088 | del(5)(31784->TEL05R) |  |  | - | I
5 | wild type | -Ty | 6088 | del(5)(34824->TEL05R) |  |  | - | I
6 | wild type | -Ty | 6088 | [NAME]) |  |  | - | I
7 | wild type | -Ty | 6088 | del(5)(33554->TEL05R) |  |  | - | I
8 | wild type | +Ty912 | 6076 | der(5)t(5;10)(36264;484396) |  | Ty912::YJRWTy1-2 | D | II
9 | wild type | +Ty912 | 6076 | [NAME]) |  | Ty912::YMLWTy1-1 | I | III
10 | wild type | +Ty912 | 6076 | der(5)t(5;3)(36264;169203) |  | Ty912::Unannotated delta next to YCRWdelta10 | D | II
11 | wild type | +Ty912 | 6076 | der(5)t(5;12)(36264;651119) |  | Ty912::YLRWTy1-3 | D | II
12 | wild type | +Ty912 | 6076 | der(5)t(5;13;13)(TEL05R->36264::190237->196159::196159->TEL15L) |  | Ty912::YMLWTy1-1->YMLWTy1-2::YMLWTy1-2 | I | III
13 | wild type | +Ty912 | 6076 | der(5)t(5;3)(36264;151789) |  | Ty912::Unannotated Ty at YCRWdelta10 | D | II
14 | wild type | +Ty912 | 6076 | der(5)t(5;5)(36264;431958) |  | Ty912::YERCdelta14 | I | III
15 | wild type | +Ty912 | 6076 | der(5)t(5;5)(36264;449288) |  | Ty912::YERWdelta17 | D | II
16 | wild type | +Ty912 | 6076 | der(5)t(5;3)(36264;151419) |  | Ty912::YCRWdelta10 | D | II
17 | wild type | +Ty912 | 6076 | der(5)t(5;10)(36264;484256) |  | Ty912::YJRWTy1-1 | D | II
18d | mre11 | +Ty912 | 6499 | der(5)t(5;12)(36264;481871),der(5)t(5;14)(36264;96578) |  | Ty912::YLRCTy1-1,Ty912::YNLCTy1-1 | I,D | III,II
19 | mre11 | +Ty912 | 6499 | der(5)t(5;4)(36264;1213245) |  | Ty912::YDRWTy1-5 | D | II
20 | mre11 | +Ty912 | 6499 | der(5)t(5;3)(36264;151949) |  | Ty912::YCRWdelta10 | D | II
21 | mre11 | +Ty912 | 6499 | der(5)t(5;12)(36264;657809) |  | Ty912::YLRWTy1-3 | D | II
22 | mre11 | +Ty912 | 6499 | der(5)t(5;14)(36264;96578) |  | Ty912::YNLCTy1-1 | D | II
23 | mre11 | +Ty912 | 6499 | der(5)t(5;12)(36264;599039) |  | Ty912::(YLRCdelta9 or YLRWTy1-2 or YLRCdelta12) | ? | IV
24 | mre11 | +Ty912 | 6499 | [NAME]) |  | Ty912::YLRWdelta15 | D | II
25 | rtt105 | +Ty912 | 6537 | der(5)t(5;14)(36264;96298) |  | Ty912::YNLCTy1-1 | D | II
26 | rtt105 | +Ty912 | 6537 | der(5)t(5;5)(36264;449768) |  | Ty912::YERWdelta21 | D | II
27 | rtt105 | +Ty912 | 6537 | der(5)t(5;12)(36264;657649) |  | Ty912::YLRWTy1-3 | D | II
28 | rtt105 | +Ty912 | 6537 | der(5)t(5;5)(36264;449608) |  | Ty912::YERWdelta21 | D | II
29 | rtt105 | +Ty912 | 6537 | der(5)t(5;10)(36264;484076) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
30 | rtt105 | +Ty912 | 6537 | der(5)t(5;5)(36264;449608) |  | Ty912::YERWdelta21 | D | II
31 | rtt105 | +Ty912 | 6537 | der(5)t(5;12)(36264;818810) | del(16)(TEL16L->777191::781801->TEL16R) | Ty912::YLRCdelta21 | I | III
32 | mrc1 | +Ty912 | 6529 | der(5)t(5;4)(36264;1214025) |  | Ty912::YDRWTy1-5 | D | II
33 | mrc1 | +Ty912 | 6529 | der(5)t(5;4)(36264;1212585) |  | Ty912::YDRWTy1-5 | D | II
34 | mrc1 | +Ty912 | 6529 | [NAME]) |  | Ty912::YDRWTy1-4 | D | II
35 | mrc1 | +Ty912 | 6529 | der(5)t(5;5)(36264;449608) |  | Ty912::YERWdelta21 | D | II
36 | mrc1 | +Ty912 | 6529 | der(5)t(5;7)(36264;541966) |  | Ty912::(YGRWdelta11 or YGRCdelta12 or YGRWTy1-1) | ? | IV
37 | mrc1 | +Ty912 | 6529 | der(5)t(5;10)(36264;483936) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
38 | mrc1 | +Ty912 | 6529 | der(5)t(5;4)(36264;1213405) |  | Ty912::YDRWTy1-5 | D | II
39 | srs2 | +Ty912 | 6539 | der(5)t(5;3)(36264;169509) |  | Ty912::YCRWdelta11 | D | II
40 | srs2 | +Ty912 | 6539 | der(5)t(5;12)(36264;821230) |  | Ty912::YLRCdelta21 | I | III
41 | srs2 | +Ty912 | 6539 | der(5)t(5;10)(36264;484076) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
42 | srs2 | +Ty912 | 6539 | der(5)t(5;3)(36264;169649) |  | Ty912::YCRWdelta11 | D | II
43 | srs2 | +Ty912 | 6539 | der(5)t(5;4)(36264;1214025) |  | Ty912::YDRWTy1-5 | D | II
44 | srs2 | +Ty912 | 6539 | der(5)t(5;10)(36264;484256) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
45 | srs2 | +Ty912 | 6539 | der(5)t(5;16)(36264;856872) |  | Ty912::(YPRWTy1-3 or YPRCdelta22 or YPRCTy1-4) | ? | IV
46 | mec1 sml1 | +Ty912 | 6581 | der(5)t(5;12;16)(TEL05R->36264::?(599339<->976200)::857192->TEL16R) |  | Ty912::?((YLRCdelta9 or YLRWTy1-2 or YLRWdelta12)<->YLRCTy2-2)::(YPRWTy1-3 or YPRCdelta22 or YPRCTy1-4) | ? | V
47 | mec1 sml1 | +Ty912 | 6581 | der(5)t(5;4;4)(TEL05R->36264::806417->980797::1353255->TEL04R) |  | Ty912::(YDRWdelta11 or YDR170W-A)->(YDRWTy2-3 or YDRCTy1-3)::(YDRWdelta29 or YDRWdelta30) | ? | V
48 | mec1 sml1 | +Ty912 | 6581 | der(5)t(5;7)(36264;542286) |  | Ty912::(YGRWdelta11 or YGRCdelta12 or YGRWTy1-1) | ? | IV
49 | mec1 sml1 | +Ty912 | 6581 | der(5)t(5;10)(36264;484076) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
50 | mec1 sml1 | +Ty912 | 6581 | der(5)t(5;15)(36264;117547) |  | Ty912::YOLWTy1-1 | I | III
51 | mec1 sml1 | +Ty912 | 6581 | der(5)t(5;16)(36264;810821) |  | Ty912::(YPRWdelta17 or YPRCTy1-2) | ? | IV
52 | mec1 sml1 | +Ty912 | 6581 | der(5)t(5;3)(36264;82368) |  | Ty912::(YCLCdelta1 or YCLWdelta15) | ? | IV
53 | rtt109 | +Ty912 | 6513 | der(5)t(5;4)(36264;805767) | +8 | Ty912::(YDRWdelta11 or YDR170W-A) | D | II
54 | rtt109 | +Ty912 | 6513 | der(5)t(5;4;10)(TEL05R->36264::1101813->1206515::483936->TEL10R) |  | Ty912::YDRWTy1-4::YDRWTy1-5::(YJRWTy1-1 or YJRWTy1-2) | ? | V
55 | rtt109 | +Ty912 | 6513 | der(5)t(5;4)(36264;96578) | +3,+8 | Ty912::YNLCTy1-1 | D | II
56 | rtt109 | +Ty912 | 6513 | der(5)t(5;10)(36264;484876) | +8 | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
57 | rtt109 | +Ty912 | 6513 | der(5)t(5;10)(36264;484076) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
58 | rtt109 | +Ty912 | 6513 | der(5)t(5;8)(36264;85265) | +dup(5)(36264->TEL05R) | [NAME] or YHLWdelta2) | ? | IV
59 | rtt109 | +Ty912 | 6513 | der(5)t(5;3)(36264;169509) |  | Ty912::YCRWdelta11 | D | II
60 | spt21 | +Ty912 | 6547 | der(5)t(5;14)(36264;96298) |  | Ty912::YNLCTy1-1 | D | II
61 | spt21 | +Ty912 | 6547 | der(5)t(5;13)(36264;151789) |  | Ty912::YCRWdelta10 | D | II
62 | spt21 | +Ty912 | 6547 | der(5)t(5;12)(36264;818640) |  | Ty912::YLRCdelta21 | I | III
63 | spt21 | +Ty912 | 6547 | der(5)t(5;12)(36264;818960) |  | Ty912::YLRCdelta21 | I | III
64 | spt21 | +Ty912 | 6547 | der(5)t(5;12)(36264;818640) |  | Ty912::YLRCdelta21 | I | III
65 | spt21 | +Ty912 | 6547 | der(5)t(5;12)(36264;599189) |  | Ty912::(YLRCdelta9 or YLRWTy1-2 or YLRWdelta12) | ? | IV
66 | spt21 | +Ty912 | 6547 | der(5)t(5;10;16)(TEL05R->36264::484076->584736::916073->TEL16R) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2)->CSN12::SKI3 | ? | V
67 | rad53 sml1 | +Ty912 | 6587 | der(5)t(5;16)(36264;856522) | +12 | Ty912::(YPRWTy1-3 or YPRCdelta22 or YPRCTy1-4) | ? | IV
68 | rad53 sml1 | +Ty912 | 6587 | der(5)t(5;16)(36264;850322) |  | Ty912::(YPRWTy1-3 or YPRCdelta22 or YPRCTy1-4) | ? | IV
69 | rad53 sml1 | +Ty912 | 6587 | der(5)t(5;4)(36264;1101813) |  | Ty912::YDRWTy1-4 | D | II
70 | rad53 sml1 | +Ty912 | 6587 | der(5)t(5;16)(36264;850322) |  | Ty912::(YPRWTy1-3 or YPRCdelta22 or YPRCTy1-4) | ? | IV
71 | rad53 sml1 | +Ty912 | 6587 | [NAME]) | trp(5)(40124<->44764);dup(44904<->60428) |  | - | I
72 | rad53 sml1 | +Ty912 | 6588 | der(5)t(5;3)(36264;169509) |  | Ty912::YCRWdelta11 | D | II
73 | rad53 sml1 | +Ty912 | 6588 | [NAME]) | trp(5)(65518<->68538) |  | - | I
74 | rtt103 | +Ty912 | 6531 | der(5)t(5;14)(36264;96298) |  | Ty912::YNLCTy1-1 | D | II
75 | rtt103 | +Ty912 | 6531 | der(5)t(5;10)(36264;483936) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
76 | rtt103 | +Ty912 | 6531 | der(5)t(5;12)(36264;599189) |  | Ty912::(YLRCdelta9 or YLRWTy1-2 or YLRWdelta12) | ? | IV
77 | rtt103 | +Ty912 | 6531 | der(5)t(5;3)(36264;169509) |  | Ty912::YCRWdelta11 | D | II
78 | rtt103 | +Ty912 | 6531 | der(5)t(5;12)(36264;657989) |  | Ty912::YLRWTy1-3 | D | II
79 | rtt103 | +Ty912 | 6531 | [NAME]) |  |  | - | I
80 | rtt103 | +Ty912 | 6531 | [NAME]) |  |  | - | I
81 | asf1 | +Ty912 | 6519 | der(5)t(5;3)(36264;169969) |  | Ty912::YCRWdelta11 | D | II
82 | asf1 | +Ty912 | 6519 | der(5)t(5;14)(36264;96298) |  | Ty912::YNLCTy1-1 | D | II
83 | asf1 | +Ty912 | 6519 | der(5)t(5;16)(36264;856522) |  | Ty912::(YPRWTy1-3 or YPRCdelta22 or YPRCTy1-4) | ? | IV
84 | asf1 | +Ty912 | 6519 | [NAME]) |  | Ty912::YJLCdelta3 | D | II
85 | asf1 | +Ty912 | 6519 | der(5)t(5;10)(36264;483936) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
86 | asf1 | +Ty912 | 6519 | der(5)t(5;14)(36264;100998) |  | Ty912::YNLCTy1-1 | D | II
87 | asf1 | +Ty912 | 6519 | der(5)t(5;10)(36264;483936) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
88 | rad27 | +Ty912 | 6545 | der(5)t(5;12)(36264;818640) |  | Ty912::YLRCdelta21 | I | III
89 | rad27 | +Ty912 | 6545 | der(5)t(5;10)(36264;484396) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
90 | rad27 | +Ty912 | 6545 | der(5)t(5;2)(36264;33171) |  | Ty912::(YBLWTy2-1 or YBLWdelta6) | I | III
91 | rad27 | +Ty912 | 6545 | [NAME]) |  | Ty912::YNLCTy1-1 | D | II
92 | rad27 | +Ty912 | 6545 | [NAME]) |  |  | - | I
93 | rad27 | +Ty912 | 6545 | der(5)t(5;10)(36264;484396) |  | Ty912::(YJRWTy1-1 or YJRWTy1-2) | D | II
94 | rad27 | +Ty912 | 6545 | der(5)t(5;5)(36264;449768) |  | Ty912::(YERWdelta17 or YERCTy1-1) | ? | IV
a Event descriptions are adaptations from human cytogenetics rules ISCN 1995. See (2001). "ISCN rules for listing chromosomal rearrangements." Curr Protoc Hum Genet Appendix 4: Appendix 4C.
b Suspected rearrangement loci are those found at the borders of the deleted, duplicated, or triplicated regions believed to be involved in the Ty912-mediated rearrangement. In certain cases, multiple, closely spaced [NAME] were found and the involved Ty could not be specifically identiied; thus, all putative Tys are listed within parantheses.
c Indicates the orientation of the Ty thought to be fused to chromosome V at Ty912 based on the aCGH data alone. D: direct telomere oriented [NAME] (class I); I: indirect centromere oriented [NAME] (class II); ?: ambiguous [NAME] due to the presence of multiple [NAME] (classes IV and V); -: not applicable because of de novo telomere (class I)
d Mixed isolate containing two independent events