Spreadsheet: 96d6d6dc-dc22-4564-9aaa-c9415d5df448
Sheet: Sheet1

Table S1.  Predicted ORFs encoding enzymes of amino acid biosynthesis detected in the R. flavefaciens FD-1 genome. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3
Aromatic Amino Acid Family
ORF Designation | [NAME] | [NAME] | e.c.
[NAME] | prephenate dehydrogenase |  | 1.3.1.12
[NAME] | chorismate synthase (5-enolpyruvylshikimate-3-phosphatephospholyase) |  | 4.2.3.5
ORF00374 | 3-phosphoshikimate 1-carboxyvinyltransferase | aroA | 2.5.1.19
ORF00375 | 3-dehydroquinate synthase | aroB | 4.2.3.4
ORF00558 | prephenate dehydratase
ORF01078 | 3-dehydroquinate dehydratase, type II | aroQ | 4.2.1.10
ORF01343 | shikimate kinase | aroK | 2.7.1.71
[NAME] | shikimate dehydrogenase |  | 1.1.1.25
ORF01534 | shikimate kinase | aroK | 2.7.1.71
ORF01746 | chorismate synthase | aroC | 4.2.3.5
ORF01747 | phospho-2-dehydro-3-deoxyheptonate aldolase, trp-sensitive (phospho-2-keto-3-deoxyheptonate aldolase) (dahpsynthetase) (3-deoxy-d-arabino-heptulosonate 7-phosphate synthase) |  | 2.5.1.54
ORF02523 | anthranilate synthase component 1 (Anthranilate synthasecomponent I) |  | 4.1.3.27
ORF02524 | para-aminobenzoate/anthranilate synthase glutamine amidotransferasecomponent II |  | 6.3.5.8  4.1.3.27
ORF02525 | anthranilate phosphoribosyltransferase | [NAME] | 2.4.2.18
ORF02526 | indole-3-glycerol phosphate synthase | trpC | 4.1.1.48
ORF02527 | N-(5'phosphoribosyl)anthranilate isomerase | trpF | 5.3.1.24
ORF02529 | tryptophan synthase, beta subunit | trpB | 4.2.1.20
ORF02530 | tryptophan synthase, alpha subunit | trpA | 4.2.1.20
ORF03344 | 3-deoxy-7-phosphoheptulonate synthase |  | 2.5.1.54
Aspartate Family
ORF Designation | [NAME] | [NAME] | e.c.
ORF00111 | aminotransferase YbdL |  | 2.6.1.-
ORF00157 | asparagine synthetase
ORF00171 | diaminopimelate epimerase | dapF | 5.1.1.7
[NAME] | aspartokinase
ORF01519 | asparagine synthase (glutamine-hydrolyzing) | asnB | 6.3.5.4
ORF01594 | aspartate--ammonia ligase | [NAME] | 6.3.1.1
ORF02477 | homoserine O-succinyltransferase | metA | 2.3.1.46
ORF02487 | diaminopimelate dehydrogenase |  | 1.4.1.16
ORF02521 | asparagine synthase (glutamine-hydrolyzing) | asnB | 6.3.5.4
ORF02988 | methionine adenosyltransferase | metK | 2.5.1.6
ORF03256 | asparagine synthase (glutamine-hydrolyzing) | asnB | 6.3.5.4
ORF03497 | homoserine dehydrogenase (HDH) |  | 1.1.1.3
ORF03526 | diaminopimelate decarboxylase | lysA | 4.1.1.20
ORF03533 | threonine synthase | thrC | 4.2.3.1
ORF03878 | dihydrodipicolinate reductase | dapB | 1.3.1.26
ORF03879 | dihydrodipicolinate synthase (dhdps) |  | 4.2.1.52
ORF03880 | dihydrodipicolinate synthase | dapA | 4.2.1.52
ORF03882 | aspartate-semialdehyde dehydrogenase | asd | 1.2.1.11
ORF03972 | aspartate aminotransferase (transaminase a) (aspat) |  | 2.6.1.1
Glutamate Family
ORF Designation | [NAME] | [NAME] | e.c.
ORF00238 | glutamate 5-kinase | proB | 2.7.2.11
ORF00240 | glutamate-5-semialdehyde dehydrogenase | proA | 1.2.1.41
ORF00760 | glutamine synthetase (Glutamate--ammonia ligase) |  | 6.3.1.2
ORF00991 | carbamoyl-phosphate synthase, small subunit | carA | 6.3.5.5
ORF00992 | carbamoyl-phosphate synthase, large subunit | carB | 6.3.5.5
ORF01036 | pyrroline-5-carboxylate reductase | proC | 1.5.1.2
[NAME] | NAD(p)-specific glutamate dehydrogenase (nadp-gdh)(nad(p)h-dependent glutamate dehydrogenase) |  | 1.4.1.3
ORF02349 | ornithine carbamoyltransferase
ORF02634 | glutamine synthetase, catalytic region
ORF02740 | carbamoyl-phosphate synthase, large subunit | carB | 6.3.5.5
ORF03202 | argininosuccinate synthase | argG | 6.3.4.5
ORF03204 | argininosuccinate lyase | argH | 4.3.2.1
ORF03206 | N-acetyl-gamma-glutamyl-phosphate reductase | argC | 1.2.1.38
ORF03208 | arginine biosynthesis bifunctional protein ArgJ | argJ | 2.3.1.35  2.3.1.1
ORF03210 | acetylglutamate kinase | argB | 2.7.2.8
ORF03211 | acetylornithine aminotransferase (acoat) |  | 2.6.1.11
ORF03213 | ornithine carbamoyltransferase | argF | 2.1.3.3
ORF03258 | glutamine synthetase type III
ORF03346 | glutamine synthetase type III
ORF03347 | glutamine synthetase | glnA
ORF03351 | glutamate synthase [NADPH] large chain (nadph-gogat) |  | 1.4.1.13
ORF03352 | glutamate synthase [NADPH] small chain (nadph-gogat) |  | 1.4.1.13
ORF03353 | glutamine synthetase (Glutamate--ammonia ligase) |  | 6.3.1.2
Pyruvate Family
ORF Designation | [NAME] | [NAME] | e.c.
ORF00799 | cysteine desulfurase NifS | nifS | 2.8.1.7
ORF01243 | cysteine desulfurase |  | 2.8.1.7
ORF02824 | cysteine desulfurase |  | 2.8.1.7
ORF02825 | cysteine desulfurase |  | 2.8.1.7
ORF03045 | dihydroxy-acid dehydratase | ilvD | 4.2.1.9
ORF03046 | 3-isopropylmalate dehydrogenase | leuB | 1.1.1.85
ORF03048 | threonine dehydratase | ilvA | 4.3.1.19
ORF03049 | 3-isopropylmalate dehydratase, large subunit | leuC | 4.2.1.33
ORF03050 | 3-isopropylmalate dehydratase, small subunit | leuD | 4.2.1.33
ORF03830 | branched-chain amino acid aminotransferase | ilvE | 2.6.1.42
ORF03993 | 3-isopropylmalate dehydratase, small subunit | leuD | 4.2.1.33
ORF03994 | 3-isopropylmalate dehydratase, large subunit | leuC | 4.2.1.33
ORF03995 | threonine dehydratase | ilvA | 4.3.1.19
ORF03997 | 3-isopropylmalate dehydrogenase | leuB | 1.1.1.85
ORF03998 | dihydroxy-acid dehydratase | ilvD | 4.2.1.9
ORF04002 | ketol-acid reductoisomerase | ilvC | 1.1.1.86
ORF04003 | acetolactate synthase, small subunit | ilvN | 2.2.1.6
ORF04004 | acetolactate synthase, large subunit, biosynthetic type | ilvB | 2.2.1.6
ORF04006 | 2-isopropylmalate synthase ([NAME]-isopropylmalatesynthase) (Alpha-IPM synthetase) |  | 2.3.3.13
[NAME]
ORF Designation | [NAME] | [NAME] | e.c.
ORF00103 | cysteine synthase (Beta-pyrazolylalanine synthase)(Beta-PA/CSase) (L-mimosine synthase) (O-acetylserine sulfhydrylase) (O-acetylserine (Thiol)-lyase) (CSase)(OAS-TL) |  | 2.5.1.47  2.5.1.51  2.5.1.52
ORF01145 | cysteine synthase A | cysK | 2.5.1.47
ORF01306 | phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein | thrH | 3.1.3.3
[NAME] | cysteine synthase A | cysK | 2.5.1.47
[NAME] | [NAME] | glyA | 2.1.2.1
ORF03867 | phosphoserine aminotransferase | serC | 2.6.1.52
ORF03868 | D-3-phosphoglycerate dehydrogenase (pgdh) |  | 1.1.1.95
ORF04049 | serine O-acetyltransferase |  | 2.3.1.30
Histidine Family
ORF Designation | [NAME] | [NAME] | e.c.
ORF02680 | phosphoribosyl-ATP diphosphatase | [NAME] | 3.6.1.31
ORF02681 | histidine biosynthesis bifunctional protein hisIE |  | 3.5.4.19   3.6.1.31
ORF02685 | imidazoleglycerol phosphate synthase, cyclase subunit | hisF
ORF02688 | phosphoribosyformimino-5-aminoimidazole carboxamide ribotide isomerase | [NAME] | 5.3.1.16
ORF02693 | imidazole glycerol phosphate synthase, glutamine amidotransferase subunit | [NAME] | 2.4.2.-
ORF02694 | imidazoleglycerol-phosphate dehydratase | hisB | 4.2.1.19
[NAME] | histidinol-phosphate aminotransferase (Imidazole acetol-phosphate transaminase) |  | 2.6.1.9
ORF02697 | histidinol dehydrogenase | [NAME] | 1.1.1.23
ORF02698 | ATP phosphoribosyltransferase | [NAME] | 2.4.2.17
ORF02899 | histidinol phosphate phosphatase family protein