Spreadsheet: 4a11e654-325e-4c72-a6c4-16291d5cad84
Sheet: S3 Conversion rate

Table S3. Estmation of gene conversion rate.
Using the approach of Repping et al. 2006 as a model.
118000 year TMRCA, and 25-year generation time
Some assumptions  were made about branches not analysed by Repping, i.e. G, K*, R* and S.
Branch lengths are taken from Repping et al. (2006) Figure SM-6
 |  |  |  |  |  |  |  |  | Only samples which were phased (n=83) - for inversion rate calculation
 | hg (2003) | hg (2008) | minimum no of mutations to root | maximum no of mutations to root |  | mean no of mutations to root |  |  | hg (2003) | hg (2008) | minimum no of mutations to root | maximum no of mutations to root
 |  | A2 | 4 | 4 |  | 4 |  |  |  | A2 | 4 | 4
 |  | A2 x 2 | 0 | 8 |  | 7 |  |  |  | A3 | 7 | 7
 |  | A3 | 7 | 7 |  | 7 |  |  |  | A3 x1 | 0 | 3
 |  | A3 x1 | 0 | 3 |  | 9 |  |  |  | B2a | 7 | 7
 |  | B2a | 7 | 7 |  | 7 |  |  |  | B2a x 2 | 0 | 4
 |  | B2a x 4 | 0 | 8 |  | 9 |  |  |  | B2b | 9 | 9
 |  | B2b | 9 | 9 |  | 8 |  |  |  | B2b x 4 | 0 | 16
 |  | B2b x 11 | 0 | 44 |  | 9 |  |  |  | C | 7 | 7
 |  | C | 7 | 7 |  | 10 |  |  |  | C x 2 | 0 | 6
 |  | C x 14 | 0 | 42 |  | 9 |  |  |  | D | 9 | 9
 |  | D | 9 | 9 |  | 11 |  |  |  | D x 2 | 0 | 8
 |  | D x 4 | 0 | 16 |  | 7 |  |  |  | E1a | 8 | 8
 |  | E1a | 8 | 8 |  | 10 |  |  | E3* OR E3A | E1b1* & E1b1a7 | 9 | 9
 |  | E1a x 2 | 0 | 2 |  | 10 |  |  |  | E1b1* & E1b1a7 x 3 | 0 | 6
 | E3* OR E3A | E1b1* & E1b1a7 | 9 | 9 |  | 8 |  |  | [NAME]* | E1b1b1* | 10 | 10
 |  | E1b1* & E1b1a7 x 56 | 0 | 112 |  | 10 |  |  |  | E1b1b1* x 4 | 0 | 4
 | [NAME]* | E1b1b1* | 10 | 10 |  | 7 |  |  | E3b1 | E1b1b1a | 9 | 9
 |  | E1b1b1* x 16 | 0 | 16 |  | 8 |  |  | E3b3 | E1b1b1c | 11 | 11
 | E3b1 | E1b1b1a | 9 | 9 |  | 9 |  |  |  | E2 | 7 | 7
 |  | E1b1b1a x4 | 0 | 0 |  | 9 |  |  |  | E2 x 2 | 0 | 0
 | E3b3 | E1b1b1c | 11 | 11 |  | 8 |  |  |  | F | 10 | 10
 |  | E1b1b1c x 1 | 0 | 2 |  | 9 |  |  |  | F x 1 | 0 | 4
 |  | E2 | 7 | 7 |  | 9 |  |  |  | G | 10 | 10
 |  | E2 x 5 | 0 | 0 |  | 10 |  |  |  | G x 1 | 0 | 4
 |  | F | 10 | 10 |  | 8 |  |  |  | Hst | 8 | 8
 |  | F x 5 | 0 | 20 |  | 8 |  |  | HstXH1 | H1 | 10 | 10
 |  | G | 10 | 10 |  | 9 |  |  |  | I | 7 | 7
 |  | G x 15 | 0 | 60 |  | 9 |  |  |  | I x 2 | 0 | 2
 |  | Hst | 8 | 8 |  | 9 |  |  | Jst(xJ2) | J1 | 8 | 8
 | HstXH1 | H1 | 10 | 10 |  | 7 |  |  |  | J1 x 2 | 0 | 2
 |  | H1 x 7 | 0 | 14 |  | 7 |  |  |  | J2 | 9 | 9
 |  | I | 7 | 7 |  | 12 |  |  |  | J2 x 5 | 0 | 10
 |  | I x 5 | 0 | 5 |  | 10 |  |  |  | K | 9 | 9
 | Jst(xJ2) | J1 | 8 | 8 |  | 9 |  |  |  | L | 8 | 8
 |  | J1 x 20 | 0 | 20 |  | 9 |  |  |  | M | 9 | 9
 |  | J2 | 9 | 9 |  | 11 |  |  |  | M x 1 | 0 | 3
 |  | J2 x 12 | 0 | 24 |  | 11 |  |  |  | Nst | 9 | 9
 |  | K | 9 | 9 |  |  |  |  |  | Nst x 1 | 0 | 0
 |  | K x 2 | 0 | 6 |  |  |  |  | N3 | N1c | 10 | 10
 |  | L | 8 | 8 |  |  |  |  |  | O* | 8 | 8
 |  | L x 16 | 0 | 32 |  |  |  |  |  | O* x 5 | 0 | 5
 |  | M | 9 | 9 |  |  |  |  |  | O1a | 8 | 8
 |  | M x 11 | 0 | 33 |  |  |  |  |  | O1a x 1 | 0 | 1
 |  | Nst | 9 | 9 |  |  |  |  |  | O3* | 9 | 9
 |  | Nst x 7 | 0 | 0 |  |  |  |  |  | O3*  x 3 | 0 | 3
 | N3 | N1c | 10 | 10 |  |  |  |  | O3e | O3a3c | 9 | 9
 |  | N1c x 16 | 0 | 16 |  |  |  |  |  | O3a3c x 1 | 0 | 1
 |  | O* | 8 | 8 |  |  |  |  |  | Q* | 9 | 9
 |  | O* x 21 | 0 | 21 |  |  |  |  |  | Q* x 1 | 0 | 2
 |  | O1a | 8 | 8 |  |  |  |  |  | Q1a* & Q1a3a | 7 | 7
 |  | O1a x 5 | 0 | 5 |  |  |  |  |  | Q1a* & Q1a3a x 1 | 0 | 0
 |  | O3* | 9 | 9 |  |  |  |  |  | R* | 7 | 7
 |  | O3*  x 12 | 0 | 12 |  |  |  |  |  | R1a1 | 12 | 12
 | O3e | O3a3c | 9 | 9 |  |  |  |  |  | R1b1b1 & R1b1b2a2* | 10 | 10
 |  | O3a3c x 17 | 0 | 17 |  |  |  |  |  | R1b1b1 & R1b1b2a2* x 1 | 0 | 1
 |  | Q* | 9 | 9 |  |  |  |  |  | R1b1* | 9 | 9
 |  | Q* x 1 | 0 | 2 |  |  |  |  |  | R2 | 9 | 9
 |  | Q1a* & Q1a3a | 7 | 7 |  |  |  |  |  | S1* | 11 | 11
 |  | Q1a* & Q1a3a x 12 | 0 | 0 |  |  |  |  |  | T* | 11 | 11
 |  | R* | 7 | 7 |  |  |  |  |  | tot muts (stot)
 |  | R* x 5 | 0 | 0
 |  | R1a1 | 12 | 12 |  |  |  |  |  | ttot(y)
 |  | R1a1 x 17 | 0 | 51 |  |  |  |  |  | ttot(gen) 25
 |  | R1b1b1 & R1b1b2a2* | 10 | 10
 |  | R1b1b1 & R1b1b2a2* x 9 | 0 | 9 |  |  |  |  |  | rate for 56 gene conversion events
 |  | R1b1* | 9 | 9
 |  | R1b1* x 2 | 0 | 0 |  |  |  |  |  | rate for 3 inversions
 |  | R2 | 9 | 9
 |  | R2 x2 | 0 | 2
 |  | S1* | 11 | 11
 |  | S1* x 2 | 0 | 10
 |  | T* | 11 | 11
 |  | tot muts (stot)
 |  | ttot(y)
 |  | ttot(gen) 25
 |  | rate for 146 gene conversion events