Spreadsheet: 59a32859-d80c-4fda-bd62-5bfdd62e1882
Sheet: Sheet1

Table S9. Non-Synonymous SNPs in Virulence Genes of Francisella tularensis subsp. [NAME] (WY96 vs Schu S4) | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14 | Unnamed: 15 | Unnamed: 16 | Unnamed: 17 | Unnamed: 18
 | Schu S4 | WY96 | Schu S4 | WY96 | Schu S4 | WY96 | Schu S4 | WY96 | Conservation of | Virulence | Schu S4 |  |  |  | Schu S4 | Schu S4
SNP ID | Position | Position | Nuc | Nuc | AA | AA | Amino-acid Type | Amino-acid Type | of Amino-acid Type | Type | LocusTag | Product | Gene | Strand | GeneStart | GeneEnd | EC Number | Note
SNP10750 | 71644 | 156545 | A | G | L | P | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0070c | major facilitator superfamily (MFS) tranport protein | ampG | complement | 70944 | 72209 |  | Similar to AMPG_ECOLI (P36670) AmpG protein from E. coli (491 aa). FASTA: opt: 996 Z-score: 1121.1 E(): 1.5e-54 Smith-Waterman score: 996; 38.614 identity in 404 aa overlap
SNP180323 | 104755 | 189389 | C | T | S | L | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0101 | conserved membrane hypothetical protein | N\A | template | 104514 | 105527 |  | Similar to Y402_RICPR (Q9ZDC9) Hypothetical protein RP402 from Rickettsia prowazekii (317 aa). FASTA: opt: 431 Z-score: 518.0 E(): 5.9e-21 Smith-Waterman score: 432; 28.909 identity in 339 aa overlap ORF ftt0101
SNP309934 | 105133 | 189767 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0101 | conserved membrane hypothetical protein | N\A | template | 104514 | 105527 |  | Similar to Y402_RICPR (Q9ZDC9) Hypothetical protein RP402 from Rickettsia prowazekii (317 aa). FASTA: opt: 431 Z-score: 518.0 E(): 5.9e-21 Smith-Waterman score: 432; 28.909 identity in 339 aa overlap ORF ftt0101
SNP1679 | 133395 | 218033 | A | C | Y | S | aromatic, hydrophobic, polar | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0122 |  | oppA | template | 133349 | 134806 |  | Similar to OPPA_HAEIN (P71370) Periplasmic oligopeptide-binding protein (precursor) from Haemophilus influenzae (541 aa). FASTA: opt: 924 Z-score: 1112.1 E(): 4.7e-54 Smith-Waterman score: 924; 34.490identity in 461 aa overlap oligopeptide transporter, subunit A, ABC transporter, periplasmic protein
SNP213510 | 133431 | 218069 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0122 |  | oppA | template | 133349 | 134806 |  | Similar to OPPA_HAEIN (P71370) Periplasmic oligopeptide-binding protein (precursor) from Haemophilus influenzae (541 aa). FASTA: opt: 924 Z-score: 1112.1 E(): 4.7e-54 Smith-Waterman score: 924; 34.490identity in 461 aa overlap oligopeptide transporter, subunit A, ABC transporter, periplasmic protein
SNP152872 | 133697 | 218335 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0122 |  | oppA | template | 133349 | 134806 |  | Similar to OPPA_HAEIN (P71370) Periplasmic oligopeptide-binding protein (precursor) from Haemophilus influenzae (541 aa). FASTA: opt: 924 Z-score: 1112.1 E(): 4.7e-54 Smith-Waterman score: 924; 34.490identity in 461 aa overlap oligopeptide transporter, subunit A, ABC transporter, periplasmic protein
SNP188764 | 134511 | 219149 | A | C | Q | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0122 |  | oppA | template | 133349 | 134806 |  | Similar to OPPA_HAEIN (P71370) Periplasmic oligopeptide-binding protein (precursor) from Haemophilus influenzae (541 aa). FASTA: opt: 924 Z-score: 1112.1 E(): 4.7e-54 Smith-Waterman score: 924; 34.490identity in 461 aa overlap oligopeptide transporter, subunit A, ABC transporter, periplasmic protein
SNP85977 | 134698 | 219336 | T | G | H | Q | aromatic, polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0122 |  | oppA | template | 133349 | 134806 |  | Similar to OPPA_HAEIN (P71370) Periplasmic oligopeptide-binding protein (precursor) from Haemophilus influenzae (541 aa). FASTA: opt: 924 Z-score: 1112.1 E(): 4.7e-54 Smith-Waterman score: 924; 34.490identity in 461 aa overlap oligopeptide transporter, subunit A, ABC transporter, periplasmic protein
[NAME] | 135736 | 220374 | G | A | G | R | aliphatic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT0123 | oligopeptide transporter, subunit B, ABC transporter, membrane protein, pseudogene | oppB | template | 135100 | 135765 |  | Similar to Q9CJT2 (Q9CJT2) OppB from Pasteurella multicoda (306 aa) FASTA: opt: 953 Z-score: 1065.0 E(): 2e-51 Smith-Waterman score: 953; 46.645 identity in 313 aa overlap. Contains a frameshift after aa 89
SNP136495 | 136681 | 221131 | G | A | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0125 | oligopeptide transporter, subunit D, ABC transporter, ATP-binding protein | oppD | template | 136633 | 137601 |  | Similar to Q8D8A2 Oligopeptide ABC transporter,ATP-binding protein D from Vibrio vulnificus (324 aa). FASTA: opt: 1202 Z-score: 1353.8 E(): 1.6e-67 Smith-Waterman score: 1202; 56.270 identity in 311 aa overlap
SNP246209 | 212099 | 1779269 | T | A | I | F | aliphatic, hydrophobic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0194c | conserved hypothetical membrane protein | N\A | complement | 211569 | 212441 |  | Similar to Q8X898 Hypothetical 31.1 kDa protein (Hypothetical membrane protein) from E.coli (274 aa). FASTA: opt: 398 Z-score: 431.1 E(): [NAME] score: 398; 26.429 identity in 280 aa overlap ORF ftt0194c
SNP166652 | 254455 | 1735814 | C | G | A | G | aliphatic, hydrophobic, neutral | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0242 | hypothetical protein | N\A | template | 254157 | 254720 |  | Similar to Q83DS9 Hypothetical protein CBU0616 from Coxiella burnetii (196 aa). FASTA: opt: 376 Z-score: 484.1 E(): 4.5e-19 Smith-Waterman score: 376; 37.634 identity in 186 aa overlap ORF ftt0242
SNP211038 | 267848 | 1754714 | G | A | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0251 | Branched-chain amino acid aminotransferase protein (class IV) | ilvE | template | 267098 | 267985 | 2.6.1.42 | Similar to Q8Y1X0 Probable branched-chain amino acid aminotransferase protein from Ralstonia solanacearum (309 aa). FASTA: opt: 706 Z-score: 903.1 E(): 2.1e-42 Smith-Waterman score: 706; 39.931 identity in 288 aa overlap
[NAME] | 268435 | 1755301 | A | G | E | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0252 | 2-isopropylmalate synthase | leuA | template | 267996 | 269369 | 2.3.3.13 | Similar to Q9C5X5 2-isopropylmalate synthase from Arabidopsis thaliana (503 aa). FASTA: opt: 493 Z-score: 601.2 E(): 1.4e-25 Smith-Waterman score: 635; 31.373 identity in 408 aa overlap. This CDS is disrupted by the insertion of an ISFtu1 element occurring very near the C-terminal end. It is not clear whether this insertion affects the function of the protein
[NAME] | 268467 | 1755333 | G | A | D | N | polar, hydrophilic, charged(-) | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0252 | 2-isopropylmalate synthase | leuA | template | 267996 | 269369 | 2.3.3.13 | Similar to Q9C5X5 2-isopropylmalate synthase from Arabidopsis thaliana (503 aa). FASTA: opt: 493 Z-score: 601.2 E(): 1.4e-25 Smith-Waterman score: 635; 31.373 identity in 408 aa overlap. This CDS is disrupted by the insertion of an ISFtu1 element occurring very near the C-terminal end. It is not clear whether this insertion affects the function of the protein
SNP204539 | 268584 | 1755450 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT0252 | 2-isopropylmalate synthase | leuA | template | 267996 | 269369 | 2.3.3.13 | Similar to Q9C5X5 2-isopropylmalate synthase from Arabidopsis thaliana (503 aa). FASTA: opt: 493 Z-score: 601.2 E(): 1.4e-25 Smith-Waterman score: 635; 31.373 identity in 408 aa overlap. This CDS is disrupted by the insertion of an ISFtu1 element occurring very near the C-terminal end. It is not clear whether this insertion affects the function of the protein
SNP22047 | 268892 | 1755758 | A | G | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0252 | 2-isopropylmalate synthase | leuA | template | 267996 | 269369 | 2.3.3.13 | Similar to Q9C5X5 2-isopropylmalate synthase from Arabidopsis thaliana (503 aa). FASTA: opt: 493 Z-score: 601.2 E(): 1.4e-25 Smith-Waterman score: 635; 31.373 identity in 408 aa overlap. This CDS is disrupted by the insertion of an ISFtu1 element occurring very near the C-terminal end. It is not clear whether this insertion affects the function of the protein
SNP184274 | 270556 | 1704415 | G | A | T | I | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0254c | hypothetical protein | N\A | complement | 270393 | 270764 |  | ORF ftt0254c
SNP274608 | 270674 | 1704533 | A | G | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0254c | hypothetical protein | N\A | complement | 270393 | 270764 |  | ORF ftt0254c
SNP271138 | 311183 | 1680669 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT0296 | Pyrrolidone-carboxylate peptidase | pcp | template | 310619 | 311296 | 3.4.19.3 | Similar to PCP_CLOPE (Q8XKH1) Pyrrolidone-carboxylate peptidase from Clostridium perfringens (215 aa). FASTA: opt: 710 Z-score: 844.3 E(): [NAME] score: 710; 52.020identity in 198 aa overlap
SNP168423 | 325410 | 1666443 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0310 | amino acid permease | N\A | template | 324974 | 326428 |  | Similar to Q8XT33 Probable amino-acid permease transmembrane protein from Ralstonia solanacearum (543 aa). FASTA: opt: 999 Z-score: 1146.0 E(): 5.5e-5 Smith-Waterman score: 999; 34.924 identity in 461 aa overlap ORF ftt0310
SNP299851 | 325923 | 1665930 | T | C | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0310 | amino acid permease | N\A | template | 324974 | 326428 |  | Similar to Q8XT33 Probable amino-acid permease transmembrane protein from Ralstonia solanacearum (543 aa). FASTA: opt: 999 Z-score: 1146.0 E(): 5.5e-5 Smith-Waterman score: 999; 34.924 identity in 461 aa overlap ORF ftt0310
SNP105135 | 327104 | 1664773 | G | A | Q | * | polar, hydrophilic, neutral |  | Stop | MglA-regulated [15] | FTT0311c | hypothetical protein | N\A | complement | 326760 | 327683 |  | Similar to Q9KKV6 Hypothetical protein VCA0994 from Vibrio cholerae (326 aa). FASTA: opt: 558 Z-score: 686.8 E(): 2.3e-30 Smith-Waterman score: 558; 31.949 identity in 313 aa overlap ORF ftt0311c
[NAME] | 435845 | 1556741 | G | T | V | L | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT0421 | outer membrane lipoprotein, pseudogene | N\A | template | 435656 | 435886 |  | Similar to Q8ZRH1 Putative outer membrane lipoprotein from Salmonella typhimurium (119 aa). FASTA: opt: 327 Z-score: 429.7 bits: 84.9 E(): 4.4e-16 Smith-Waterman score: 327; 43.860 identity in 114 aa overlap ORF ftt0421
SNP231746 | 436010 | 1556575 | A | C | Y | S | aromatic, hydrophobic, polar | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0421 | outer membrane lipoprotein, pseudogene | N\A | template | 435886 | 436011 |  | Similar to Q8ZRH1 Putative outer membrane lipoprotein from Salmonella typhimurium (119 aa). FASTA: opt: 327 Z-score: 429.7 bits: 84.9 E(): 4.4e-16 Smith-Waterman score: 327; 43.860 identity in 114 aa overlap ORF ftt0421
SNP227603 | 570128 | 944052 | T | C | F | S | aromatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0551 | conserved hypothetical protein, pseudogene | N\A | template | 570082 | 570834 |  | Similar to Q92LL0 Hypothetical protein R03032 from Rhizobium meliloti (367 aa). FASTA: opt: 921 Z-score: 1129.8 E(): 4.9e-55 Smith-Waterman score: 921; 44.186 identity in 344 aa overlap. Contains a frameshift after aa 102. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift. ORF ftt0551
SNP261409 | 570341 | 943839 | A | G | D | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0551 | conserved hypothetical protein, pseudogene | N\A | template | 570082 | 570834 |  | Similar to Q92LL0 Hypothetical protein R03032 from Rhizobium meliloti (367 aa). FASTA: opt: 921 Z-score: 1129.8 E(): 4.9e-55 Smith-Waterman score: 921; 44.186 identity in 344 aa overlap. Contains a frameshift after aa 102. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift. ORF ftt0551
SNP165289 | 571070 | 943109 | A | G | D | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0552 | aldehyde dehydrogenase | N\A | template | 570847 | 572343 | 1.2.1.- | Similar to [NAME] dehydrogenase from [NAME] campestris (510 aa). FASTA: opt: 1972 Z-score: 2329.9 E(): 6.9e-122 Smith-Waterman score: 1972; 60.285 identity in 491 aa overlap ORF ftt0552
SNP242803 | 571329 | 942850 | T | A | N | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT0552 | aldehyde dehydrogenase | N\A | template | 570847 | 572343 | 1.2.1.- | Similar to [NAME] dehydrogenase from [NAME] campestris (510 aa). FASTA: opt: 1972 Z-score: 2329.9 E(): 6.9e-122 Smith-Waterman score: 1972; 60.285 identity in 491 aa overlap ORF ftt0552
SNP99319 | 571385 | 942794 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0552 | aldehyde dehydrogenase | N\A | template | 570847 | 572343 | 1.2.1.- | Similar to [NAME] dehydrogenase from [NAME] campestris (510 aa). FASTA: opt: 1972 Z-score: 2329.9 E(): 6.9e-122 Smith-Waterman score: 1972; 60.285 identity in 491 aa overlap ORF ftt0552
[NAME] | 572177 | 942002 | C | A | S | Y | polar, hydrophilic, neutral | aromatic, hydrophobic, polar | Non-Conservative | MglA-regulated [15] | FTT0552 | aldehyde dehydrogenase | N\A | template | 570847 | 572343 | 1.2.1.- | Similar to [NAME] dehydrogenase from [NAME] campestris (510 aa). FASTA: opt: 1972 Z-score: 2329.9 E(): 6.9e-122 Smith-Waterman score: 1972; 60.285 identity in 491 aa overlap ORF ftt0552
SNP271466 | 630466 | 1059668 | T | C | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0611c | beta-lactamase | N\A | complement | 630248 | 631111 | 3.5.2.6 | Similar to [NAME] beta-lactamase BES-1 from Serratia marcescens (292 aa).FASTA: opt: 621 Z-score: 723.1 E(): 2.2e-32 Smith-Waterman score: 621; 34.397 identity in 282 aa overlap ORF ftt0611c
[NAME] | 632960 | 1057172 | A | G | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0613c | hypothetical protein | N\A | complement | 632680 | 633099 |  | This ORF is longer. ORF ftt0613c
SNP112263 | 671098 | 1019058 | T | C | V | A | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | [NAME] | Proton-dependent oligopeptide transport (POT) family protein | N\A | template | 670962 | 672530 |  | Similar to Q9L9P6 IraB from Legionella pneumophila (501 aa). FASTA: opt: 1486 Z-score: 1640.1 E(): 1.8e-83 Smith-Waterman score: 1486; 46.708 identity in 486 aa overlap. ORF ftt0651
SNP133682 | 671421 | 1018735 | G | A | G | R | aliphatic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | [NAME] | Proton-dependent oligopeptide transport (POT) family protein | N\A | template | 670962 | 672530 |  | Similar to Q9L9P6 IraB from Legionella pneumophila (501 aa). FASTA: opt: 1486 Z-score: 1640.1 E(): 1.8e-83 Smith-Waterman score: 1486; 46.708 identity in 486 aa overlap. ORF ftt0651
SNP186413 | 671866 | 1018290 | A | G | H | R | aromatic, polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | [NAME] | Proton-dependent oligopeptide transport (POT) family protein | N\A | template | 670962 | 672530 |  | Similar to Q9L9P6 IraB from Legionella pneumophila (501 aa). FASTA: opt: 1486 Z-score: 1640.1 E(): 1.8e-83 Smith-Waterman score: 1486; 46.708 identity in 486 aa overlap. ORF ftt0651
SNP228126 | 672307 | 1017849 | A | G | E | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | [NAME] | Proton-dependent oligopeptide transport (POT) family protein | N\A | template | 670962 | 672530 |  | Similar to Q9L9P6 IraB from Legionella pneumophila (501 aa). FASTA: opt: 1486 Z-score: 1640.1 E(): 1.8e-83 Smith-Waterman score: 1486; 46.708 identity in 486 aa overlap. ORF ftt0651
SNP262842 | 745677 | 1421938 | A | G | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0723c | Short-chain dehydrogenase/reductase family protein | N\A | complement | 745381 | 746169 | 1.-.-.- | Similar to Q88H18 Oxidoreductase, short chain dehydrogenase/reductase family Pseudomonas putida (strain KT2440) (248 aa). FASTA: opt: 792 Z-score: 881.9 E(): 3.1e-41 Smith-Waterman score: 792; 47.984 identity in 248 aa overlap. ORF ftt0723c
SNP229387 | 746729 | 1420886 | C | T | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0724c | D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein, pseudogene | dacB1 | complement | 746163 | 747149 | 3.4.16.4 | Similar to Q8EEI8 Penicillin-binding protein 4 from Shewanella oneidensis (507 aa) aa). FASTA: opt: 645 Z-score: 721.3 E(): 2.5e-32 Smith-Waterman score: 645; 31.478identity in 467 aa overlap. Contains a frameshift after aa 136. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift
SNP230465 | 746731 | 1420884 | G | T | T | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT0724c | D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein, pseudogene | dacB1 | complement | 746163 | 747149 | 3.4.16.4 | Similar to Q8EEI8 Penicillin-binding protein 4 from Shewanella oneidensis (507 aa) aa). FASTA: opt: 645 Z-score: 721.3 E(): 2.5e-32 Smith-Waterman score: 645; 31.478identity in 467 aa overlap. Contains a frameshift after aa 136. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift
SNP21051 | 746849 | 1420766 | C | A | G | C | aliphatic, neutral | polar, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0724c | D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein, pseudogene | dacB1 | complement | 746163 | 747149 | 3.4.16.4 | Similar to Q8EEI8 Penicillin-binding protein 4 from Shewanella oneidensis (507 aa) aa). FASTA: opt: 645 Z-score: 721.3 E(): 2.5e-32 Smith-Waterman score: 645; 31.478identity in 467 aa overlap. Contains a frameshift after aa 136. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift
SNP208084 | 747141 | 1420474 | A | C | N | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT0724c | D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein, pseudogene | dacB1 | complement | 746163 | 747149 | 3.4.16.4 | Similar to Q8EEI8 Penicillin-binding protein 4 from Shewanella oneidensis (507 aa) aa). FASTA: opt: 645 Z-score: 721.3 E(): 2.5e-32 Smith-Waterman score: 645; 31.478identity in 467 aa overlap. Contains a frameshift after aa 136. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift
[NAME] | 769255 | 641889 | T | C | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0747c | hypothetical protein | N\A | complement | 769163 | 769948 |  | Similar to Q88NQ3 Membrane fusion protein,putative (289 aa). FASTA: opt: 721 Z-score: 853.4 E(): 1.2e-39 Smith-Waterman score: 721; 41.434identity in 251 aa overlap. Similar to ydhJ and yhcQ in E. coli. ORF ftt0747c
SNP148262 | 858355 | 1262888 | T | G | * | E |  | polar, hydrophilic, charged(-) | UnStop | MglA-regulated [15] | FTT0844 | rossman fold oxidoreductase, pseudogene | N\A | template | 858355 | 858900 | 1.-.-.- | Similar to Q9F7P6 Predicted CsgA,Rossman fold oxidoreductase from [NAME]-proteobacterium EBAC31A08 (262 aa). FASTA: opt: 764 Z-score: 936.3 E(): 2.9e-44 Smith-Waterman score: 764; 53.390identity in 236 aa overlap. Contains an in-frame stop codon after aa 59 ORF ftt0844
SNP194507 | 865449 | 1255911 | C | A | H | N | aromatic, polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0852 | conserved hypothetical protein, pseudogene | N\A | template | 865344 | 865892 |  | Weakly similar to Q8D5E8 Transglutaminase-like enzyme from Vibrio vulnificus (300 aa). FASTA: opt: 336 Z-score: 432.9 E(): 3.2e-16 Smith-Waterman score: 401; 29.779 identity in 272 aa overlap. Contains a frameshift after codon 183 ORF ftt0852
SNP200683 | 865539 | 1255821 | T | C | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0852 | conserved hypothetical protein, pseudogene | N\A | template | 865344 | 865892 |  | Weakly similar to Q8D5E8 Transglutaminase-like enzyme from Vibrio vulnificus (300 aa). FASTA: opt: 336 Z-score: 432.9 E(): 3.2e-16 Smith-Waterman score: 401; 29.779 identity in 272 aa overlap. Contains a frameshift after codon 183 ORF ftt0852
SNP137577 | 865677 | 1255683 | A | G | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0852 | conserved hypothetical protein, pseudogene | N\A | template | 865344 | 865892 |  | Weakly similar to Q8D5E8 Transglutaminase-like enzyme from Vibrio vulnificus (300 aa). FASTA: opt: 336 Z-score: 432.9 E(): 3.2e-16 Smith-Waterman score: 401; 29.779 identity in 272 aa overlap. Contains a frameshift after codon 183 ORF ftt0852
SNP154155 | 865680 | 1255680 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0852 | conserved hypothetical protein, pseudogene | N\A | template | 865344 | 865892 |  | Weakly similar to Q8D5E8 Transglutaminase-like enzyme from Vibrio vulnificus (300 aa). FASTA: opt: 336 Z-score: 432.9 E(): 3.2e-16 Smith-Waterman score: 401; 29.779 identity in 272 aa overlap. Contains a frameshift after codon 183 ORF ftt0852
SNP190682 | 865732 | 1255628 | G | A | R | H | polar, hydrophilic, charged(+) | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT0852 | conserved hypothetical protein, pseudogene | N\A | template | 865344 | 865892 |  | Weakly similar to Q8D5E8 Transglutaminase-like enzyme from Vibrio vulnificus (300 aa). FASTA: opt: 336 Z-score: 432.9 E(): 3.2e-16 Smith-Waterman score: 401; 29.779 identity in 272 aa overlap. Contains a frameshift after codon 183 ORF ftt0852
[NAME] | 866319 | 1255041 | G | A | G | E | aliphatic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | MglA-regulated [15] | FTT0852 | conserved hypothetical protein, pseudogene | N\A | template | 865892 | 866326 |  | Weakly similar to Q8D5E8 Transglutaminase-like enzyme from Vibrio vulnificus (300 aa). FASTA: opt: 336 Z-score: 432.9 E(): 3.2e-16 Smith-Waterman score: 401; 29.779 identity in 272 aa overlap. Contains a frameshift after codon 183 ORF ftt0852
SNP335154 | 890824 | 1230584 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0883 | alcohol dehydrogenase class III, pseudogene | N\A | template | 890650 | 890886 | 1.2.1.1 | Similar to CAD84818 Alcohol dehydrogenase class III from Ralstonia solanacearum (368 aa). FASTA: opt: 1760 Z-score: 1914.4 E(): 8.8e-99 Smith-Waterman score: 1760; 69.189identity in 370 aa overlap. Contains frameshifts after aa 86 and 105 ORF ftt0883
SNP43817 | 890994 | 1230415 | T | G | C | G | polar, hydrophobic, neutral | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0883 | alcohol dehydrogenase class III, pseudogene | N\A | template | 890964 | 891758 | 1.2.1.1 | Similar to CAD84818 Alcohol dehydrogenase class III from Ralstonia solanacearum (368 aa). FASTA: opt: 1760 Z-score: 1914.4 E(): 8.8e-99 Smith-Waterman score: 1760; 69.189identity in 370 aa overlap. Contains frameshifts after aa 86 and 105 ORF ftt0883
SNP299010 | 891413 | 1229996 | T | G | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0883 | alcohol dehydrogenase class III, pseudogene | N\A | template | 890964 | 891758 | 1.2.1.1 | Similar to CAD84818 Alcohol dehydrogenase class III from Ralstonia solanacearum (368 aa). FASTA: opt: 1760 Z-score: 1914.4 E(): 8.8e-99 Smith-Waterman score: 1760; 69.189identity in 370 aa overlap. Contains frameshifts after aa 86 and 105 ORF ftt0883
SNP42957 | 891725 | 1229684 | G | T | E | D | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(-) | Conservative | MglA-regulated [15] | FTT0883 | alcohol dehydrogenase class III, pseudogene | N\A | template | 890964 | 891758 | 1.2.1.1 | Similar to CAD84818 Alcohol dehydrogenase class III from Ralstonia solanacearum (368 aa). FASTA: opt: 1760 Z-score: 1914.4 E(): 8.8e-99 Smith-Waterman score: 1760; 69.189identity in 370 aa overlap. Contains frameshifts after aa 86 and 105 ORF ftt0883
SNP72275 | 891754 | 1229655 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0883 | alcohol dehydrogenase class III, pseudogene | N\A | template | 890964 | 891758 | 1.2.1.1 | Similar to CAD84818 Alcohol dehydrogenase class III from Ralstonia solanacearum (368 aa). FASTA: opt: 1760 Z-score: 1914.4 E(): 8.8e-99 Smith-Waterman score: 1760; 69.189identity in 370 aa overlap. Contains frameshifts after aa 86 and 105 ORF ftt0883
SNP350751 | 912327 | 1209081 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0905 | Type IV pili glycosylation protein | N\A | template | 912218 | 913660 |  | Similar to Q8KQ19 PilO from Pseudomonas aeruginosa (461 aa). FASTA: opt: 283 Z-score: 329.7 E(): 1.6e-10 Smith-Waterman score: 283; 25.284 identity in 352 aa overlap. PilO is required for glycosylation of Pseudomonas aeruginosa pilin. ORF ftt0905
[NAME] | 912341 | 1209067 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT0905 | Type IV pili glycosylation protein | N\A | template | 912218 | 913660 |  | Similar to Q8KQ19 PilO from Pseudomonas aeruginosa (461 aa). FASTA: opt: 283 Z-score: 329.7 E(): 1.6e-10 Smith-Waterman score: 283; 25.284 identity in 352 aa overlap. PilO is required for glycosylation of Pseudomonas aeruginosa pilin. ORF ftt0905
SNP269430 | 912353 | 1209055 | T | G | S | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0905 | Type IV pili glycosylation protein | N\A | template | 912218 | 913660 |  | Similar to Q8KQ19 PilO from Pseudomonas aeruginosa (461 aa). FASTA: opt: 283 Z-score: 329.7 E(): 1.6e-10 Smith-Waterman score: 283; 25.284 identity in 352 aa overlap. PilO is required for glycosylation of Pseudomonas aeruginosa pilin. ORF ftt0905
SNP176763 | 912393 | 1209015 | C | A | A | D | aliphatic, hydrophobic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | MglA-regulated [15] | FTT0905 | Type IV pili glycosylation protein | N\A | template | 912218 | 913660 |  | Similar to Q8KQ19 PilO from Pseudomonas aeruginosa (461 aa). FASTA: opt: 283 Z-score: 329.7 E(): 1.6e-10 Smith-Waterman score: 283; 25.284 identity in 352 aa overlap. PilO is required for glycosylation of Pseudomonas aeruginosa pilin. ORF ftt0905
SNP46976 | 912725 | 1208683 | G | T | G | W | aliphatic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0905 | Type IV pili glycosylation protein | N\A | template | 912218 | 913660 |  | Similar to Q8KQ19 PilO from Pseudomonas aeruginosa (461 aa). FASTA: opt: 283 Z-score: 329.7 E(): 1.6e-10 Smith-Waterman score: 283; 25.284 identity in 352 aa overlap. PilO is required for glycosylation of Pseudomonas aeruginosa pilin. ORF ftt0905
SNP250135 | 913406 | 1208002 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0905 | Type IV pili glycosylation protein | N\A | template | 912218 | 913660 |  | Similar to Q8KQ19 PilO from Pseudomonas aeruginosa (461 aa). FASTA: opt: 283 Z-score: 329.7 E(): 1.6e-10 Smith-Waterman score: 283; 25.284 identity in 352 aa overlap. PilO is required for glycosylation of Pseudomonas aeruginosa pilin. ORF ftt0905
SNP287422 | 972035 | 832874 | G | T | G | V | aliphatic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0960 | hypothetical protein | N\A | template | 971902 | 972885 |  | Simiar to Q8EAC2 Conserved hypothetical protein Shewanella oneidensis (371 aa). FASTA: opt: 607 Z-score: 717.9 E(): 3.9e-32 Smith-Waterman score: 607; 32.622 identity in 328 aa overlap ORF ftt0960
SNP196776 | 972412 | 833251 | A | T | S | C | polar, hydrophilic, neutral | polar, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0960 | hypothetical protein | N\A | template | 971902 | 972885 |  | Simiar to Q8EAC2 Conserved hypothetical protein Shewanella oneidensis (371 aa). FASTA: opt: 607 Z-score: 717.9 E(): 3.9e-32 Smith-Waterman score: 607; 32.622 identity in 328 aa overlap ORF ftt0960
SNP223318 | 972523 | 833362 | T | G | C | G | polar, hydrophobic, neutral | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT0960 | hypothetical protein | N\A | template | 971902 | 972885 |  | Simiar to Q8EAC2 Conserved hypothetical protein Shewanella oneidensis (371 aa). FASTA: opt: 607 Z-score: 717.9 E(): 3.9e-32 Smith-Waterman score: 607; 32.622 identity in 328 aa overlap ORF ftt0960
SNP220153 | 986478 | 847318 | G | A | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0974 | amidinotransferase family protein, pseudogene | N\A | template | 986280 | 986498 | 2.1.4.- | Similar to Q826R2 Hypothetical protein from Streptomyces avermitilis (289 aa). FASTA: opt: 558 Z-score: 707.3 bits: 138.7 E(): 1.7e-31 Smith-Waterman score: 558; 34.351identity in 262 aa overlap. Contains an in-frame stop codon after aa 71 ORF ftt0974
SNP59889 | 986836 | 847676 | C | A | P | Q | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0974 | amidinotransferase family protein, pseudogene | N\A | template | 986499 | 987062 | 2.1.4.- | Similar to Q826R2 Hypothetical protein from Streptomyces avermitilis (289 aa). FASTA: opt: 558 Z-score: 707.3 bits: 138.7 E(): 1.7e-31 Smith-Waterman score: 558; 34.351identity in 262 aa overlap. Contains an in-frame stop codon after aa 71 ORF ftt0974
SNP260376 | 986875 | 847715 | C | A | T | N | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | MglA-regulated [15] | FTT0974 | amidinotransferase family protein, pseudogene | N\A | template | 986499 | 987062 | 2.1.4.- | Similar to Q826R2 Hypothetical protein from Streptomyces avermitilis (289 aa). FASTA: opt: 558 Z-score: 707.3 bits: 138.7 E(): 1.7e-31 Smith-Waterman score: 558; 34.351identity in 262 aa overlap. Contains an in-frame stop codon after aa 71 ORF ftt0974
SNP201943 | 986946 | 847786 | A | G | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | MglA-regulated [15] | FTT0974 | amidinotransferase family protein, pseudogene | N\A | template | 986499 | 987062 | 2.1.4.- | Similar to Q826R2 Hypothetical protein from Streptomyces avermitilis (289 aa). FASTA: opt: 558 Z-score: 707.3 bits: 138.7 E(): 1.7e-31 Smith-Waterman score: 558; 34.351identity in 262 aa overlap. Contains an in-frame stop codon after aa 71 ORF ftt0974
SNP36274 | 987442 | 848279 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0975 | hypothetical protein | N\A | template | 987157 | 987846 |  | Weakly similar to Q83CZ8 Hypothetical protein Coxiella burnetii (227 aa) 76 opt: 235 Z-score: 276.0 bits: 58.3 E(): 1.8e-07 Smith-Waterman score: 235; 25.000 identity in 236 aa overlap. ORF ftt0975
SNP31450 | 991718 | 852550 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT0980 | Aminotransferase, class II | N\A | template | 991133 | 992374 | 2.3.1.- | Similar to Q8UKI4 [NAME], class II from Agrobacterium tumefaciens (413 aa). FASTA: opt: 486 Z-score: 559.2 E(): 2.7e-23 Smith-Waterman score: 554; 28.493 identity in 365 aa overlap ORF ftt0980
SNP130306 | 991766 | 852598 | T | G | F | V | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT0980 | Aminotransferase, class II | N\A | template | 991133 | 992374 | 2.3.1.- | Similar to Q8UKI4 [NAME], class II from Agrobacterium tumefaciens (413 aa). FASTA: opt: 486 Z-score: 559.2 E(): 2.7e-23 Smith-Waterman score: 554; 28.493 identity in 365 aa overlap ORF ftt0980
SNP340968 | 991940 | 852772 | C | T | P | S | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0980 | Aminotransferase, class II | N\A | template | 991133 | 992374 | 2.3.1.- | Similar to Q8UKI4 [NAME], class II from Agrobacterium tumefaciens (413 aa). FASTA: opt: 486 Z-score: 559.2 E(): 2.7e-23 Smith-Waterman score: 554; 28.493 identity in 365 aa overlap ORF ftt0980
SNP49766 | 993053 | 853885 | C | T | A | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT0981 | hypothetical protein | N\A | template | 992707 | 993837 |  | Weak homology to two-component sensory protein. ORF ftt0981
SNP62815 | 993345 | 854177 | G | T | K | N | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT0981 | hypothetical protein | N\A | template | 992707 | 993837 |  | Weak homology to two-component sensory protein. ORF ftt0981
SNP198720 | 993553 | 854385 | T | C | Y | H | aromatic, hydrophobic, polar | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT0981 | hypothetical protein | N\A | template | 992707 | 993837 |  | Weak homology to two-component sensory protein. ORF ftt0981
SNP249235 | 997816 | 859424 | G | A | G | D | aliphatic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | MglA-regulated [15] | FTT0989 | hypothetical protein | N\A | template | 996927 | 998822 |  | Similar to Q9I271 Hypothetical protein PA2044 from Pseudomonas aeruginosa (624 aa). FASTA: opt: 447 Z-score: 484.0 E(): 4.2e-19 Smith-Waterman score: 447; 22.203 identity in 572 aa overlap. ORF ftt0989
SNP179499 | 998265 | 859875 | A | G | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | MglA-regulated [15] | FTT0989 | hypothetical protein | N\A | template | 996927 | 998822 |  | Similar to Q9I271 Hypothetical protein PA2044 from Pseudomonas aeruginosa (624 aa). FASTA: opt: 447 Z-score: 484.0 E(): 4.2e-19 Smith-Waterman score: 447; 22.203 identity in 572 aa overlap. ORF ftt0989
SNP333344 | 1042407 | 904012 | T | C | V | A | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT1032 | conserved hypothetical membrane protein,pseudogene | N\A | template | 1042217 | 1042951 |  | Similar to Q8FKS3 Putative oligogalacturonide transporter from Escherichia coli O6 (504 aa). FASTA: opt: 724 Z-score: 813.6 E(): 2e-37 Smith-Waterman score: 763; 30.675 identity in 489 aa overlap. Contains as in-frame stop codon ORF ftt1032
SNP135605 | 1044254 | 905859 | C | A | T | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1033 | glycosyl hydrolases family 31 protein,pseudogene | [NAME] | template | 1043788 | 1044963 | 3.2.1.- | Similar to Q8ZKT9 Putative alpha-xylosidase from Salmonella typhimurium (678 aa). FASTA: opt: 2551 Z-score: 3058.2 E(): 1.9e-162 Smith-Waterman score: 2551; 54.364 identity in 653 aa overlap. Contains an in-frame stop codon
SNP5957 | 1044625 | 906230 | C | T | P | S | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1033 | glycosyl hydrolases family 31 protein,pseudogene | [NAME] | template | 1043788 | 1044963 | 3.2.1.- | Similar to Q8ZKT9 Putative alpha-xylosidase from Salmonella typhimurium (678 aa). FASTA: opt: 2551 Z-score: 3058.2 E(): 1.9e-162 Smith-Waterman score: 2551; 54.364 identity in 653 aa overlap. Contains an in-frame stop codon
SNP184888 | 1044730 | 906335 | A | T | N | Y | polar, hydrophilic, neutral | aromatic, hydrophobic, polar | Non-Conservative | MglA-regulated [15] | FTT1033 | glycosyl hydrolases family 31 protein,pseudogene | [NAME] | template | 1043788 | 1044963 | 3.2.1.- | Similar to Q8ZKT9 Putative alpha-xylosidase from Salmonella typhimurium (678 aa). FASTA: opt: 2551 Z-score: 3058.2 E(): 1.9e-162 Smith-Waterman score: 2551; 54.364 identity in 653 aa overlap. Contains an in-frame stop codon
SNP103444 | 1045486 | 907094 | T | C | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | MglA-regulated [15] | FTT1034c | NADH dehydrogenase | ndh | complement | 1045073 | 1046335 | 1.16.1.- | Similar to Q8UDU6 NADH dehydrogenase from Agrobacterium tumefaciens (strain C58 / ATCC 33970) (438 aa). FASTA: opt: 826 Z-score: 983.7 E(): 6.7e-47 Smith-Waterman score: 826; 32.854 identity in 417 aa overlap.
SNP185334 | 1045743 | 907351 | A | T | L | H | aliphatic, hydrophobic, neutral | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1034c | NADH dehydrogenase | ndh | complement | 1045073 | 1046335 | 1.16.1.- | Similar to Q8UDU6 NADH dehydrogenase from Agrobacterium tumefaciens (strain C58 / ATCC 33970) (438 aa). FASTA: opt: 826 Z-score: 983.7 E(): 6.7e-47 Smith-Waterman score: 826; 32.854 identity in 417 aa overlap.
SNP151043 | 1046194 | 907802 | T | C | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1034c | NADH dehydrogenase | ndh | complement | 1045073 | 1046335 | 1.16.1.- | Similar to Q8UDU6 NADH dehydrogenase from Agrobacterium tumefaciens (strain C58 / ATCC 33970) (438 aa). FASTA: opt: 826 Z-score: 983.7 E(): 6.7e-47 Smith-Waterman score: 826; 32.854 identity in 417 aa overlap.
SNP30100 | 1099241 | 1307015 | T | C | L | P | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | [NAME] | isochorismatase hydrolase family protein | N\A | template | 1099213 | 1099734 |  | Similar to Q8EW31 Hypothetical protein from Mycoplasma penetrans (194 aa). FASTA: opt: 235 Z-score: 294.7 E(): 1.6e-08 Smith-Waterman score: 235; 31.515 identity in 165 aa overlap. ORF [NAME]
SNP239023 | 1099305 | 1307079 | A | T | L | F | aliphatic, hydrophobic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | [NAME] | isochorismatase hydrolase family protein | N\A | template | 1099213 | 1099734 |  | Similar to Q8EW31 Hypothetical protein from Mycoplasma penetrans (194 aa). FASTA: opt: 235 Z-score: 294.7 E(): 1.6e-08 Smith-Waterman score: 235; 31.515 identity in 165 aa overlap. ORF [NAME]
SNP164191 | 1100137 | 1307911 | T | C | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1090 | conserved hypothetical membrane protein | N\A | template | 1099731 | 1100408 |  | Similar to Q8A546 Putative membrane transporter involved in nicotinamide mononucleotide transport from Bacteroides thetaiotaomicron (188 aa). FASTA: opt: 285 Z-score: 336.8 E(): 7.2e-11 Smith-Waterman score: 302; 29.592 identity in 196 aa overlap. ORF ftt1090
SNP50533 | 1100403 | 1308177 | A | G | R | G | polar, hydrophilic, charged(+) | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT1090 | conserved hypothetical membrane protein | N\A | template | 1099731 | 1100408 |  | Similar to Q8A546 Putative membrane transporter involved in nicotinamide mononucleotide transport from Bacteroides thetaiotaomicron (188 aa). FASTA: opt: 285 Z-score: 336.8 E(): 7.2e-11 Smith-Waterman score: 302; 29.592 identity in 196 aa overlap. ORF ftt1090
SNP214090 | 1154839 | 1115787 | G | A | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1141 | conserved hypothetical protein, pseudogene | N\A | template | 1154761 | 1154958 |  | Similar to Q8PW11 Hypothetical protein MM1793 from Methanosarcina mazei ([NAME]) (135 aa). FASTA: opt: 328 Z-score: 442.8 E(): 9e-17 Smith-Waterman score: 328; 50.000 identity in 96 aa overlap. CDS interrupted by an ISFtu1 element ORF ftt1141
SNP358238 | 1154857 | 1115805 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1141 | conserved hypothetical protein, pseudogene | N\A | template | 1154761 | 1154958 |  | Similar to Q8PW11 Hypothetical protein MM1793 from Methanosarcina mazei ([NAME]) (135 aa). FASTA: opt: 328 Z-score: 442.8 E(): 9e-17 Smith-Waterman score: 328; 50.000 identity in 96 aa overlap. CDS interrupted by an ISFtu1 element ORF ftt1141
[NAME] | 1154911 | 1115859 | A | G | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT1141 | conserved hypothetical protein, pseudogene | N\A | template | 1154761 | 1154958 |  | Similar to Q8PW11 Hypothetical protein MM1793 from Methanosarcina mazei ([NAME]) (135 aa). FASTA: opt: 328 Z-score: 442.8 E(): 9e-17 Smith-Waterman score: 328; 50.000 identity in 96 aa overlap. CDS interrupted by an ISFtu1 element ORF ftt1141
SNP302681 | 1156818 | 1117766 | T | C | R | G | polar, hydrophilic, charged(+) | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT1146c | Aldose 1-epimerase (pseudogene) | galM | complement | 1156663 | 1156908 | 5.1.3.3 | Similar to EAA24361 (EAA24361) Aldose 1-epimerase (EC 5.1.3.3) from Fusobacterium nucleatum subsp. vincentii ATCC 49256 (330 aa). FASTA: opt: 574 Z-score: 714.1 E(): 6.9e-32 Smith-Waterman score: 574; 34.783 identity in 322 aa overlap. Contains a frameshift after aa 231, possibly caused by an internal deletion
SNP296979 | 1157392 | 1118340 | A | G | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1146c | Aldose 1-epimerase (pseudogene) | galM | complement | 1156907 | 1157641 | 5.1.3.3 | Similar to EAA24361 (EAA24361) Aldose 1-epimerase (EC 5.1.3.3) from Fusobacterium nucleatum subsp. vincentii ATCC 49256 (330 aa). FASTA: opt: 574 Z-score: 714.1 E(): 6.9e-32 Smith-Waterman score: 574; 34.783 identity in 322 aa overlap. Contains a frameshift after aa 231, possibly caused by an internal deletion
SNP252791 | 1157635 | 1118583 | C | T | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT1146c | Aldose 1-epimerase (pseudogene) | galM | complement | 1156907 | 1157641 | 5.1.3.3 | Similar to EAA24361 (EAA24361) Aldose 1-epimerase (EC 5.1.3.3) from Fusobacterium nucleatum subsp. vincentii ATCC 49256 (330 aa). FASTA: opt: 574 Z-score: 714.1 E(): 6.9e-32 Smith-Waterman score: 574; 34.783 identity in 322 aa overlap. Contains a frameshift after aa 231, possibly caused by an internal deletion
[NAME] | 1158344 | 1119292 | A | G | V | A | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT1147c | 4'-phosphopantothenoylcysteine decarboxylase,phosphopantothenoylcysteine synthetase,FMN-binding (bifunctional protein) | dfp | complement | 1157638 | 1158813 | 6.3.2.5 | Similar to DFP_HAEIN (P44953) DNA/pantothenate metabolism flavoprotein homolog from Haemophilus influenzae (400 aa). FASTA: opt: 1012 Z-score: 1206.6 E(): 2.6e-59 Smith-Waterman score: 1012; 43.577identity in 397 aa overlap.
[NAME] | 1158569 | 1119517 | C | T | R | K | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Conservative | MglA-regulated [15] | FTT1147c | 4'-phosphopantothenoylcysteine decarboxylase,phosphopantothenoylcysteine synthetase,FMN-binding (bifunctional protein) | dfp | complement | 1157638 | 1158813 | 6.3.2.5 | Similar to DFP_HAEIN (P44953) DNA/pantothenate metabolism flavoprotein homolog from Haemophilus influenzae (400 aa). FASTA: opt: 1012 Z-score: 1206.6 E(): 2.6e-59 Smith-Waterman score: 1012; 43.577identity in 397 aa overlap.
SNP212787 | 1158708 | 1119656 | A | C | F | V | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1147c | 4'-phosphopantothenoylcysteine decarboxylase,phosphopantothenoylcysteine synthetase,FMN-binding (bifunctional protein) | dfp | complement | 1157638 | 1158813 | 6.3.2.5 | Similar to DFP_HAEIN (P44953) DNA/pantothenate metabolism flavoprotein homolog from Haemophilus influenzae (400 aa). FASTA: opt: 1012 Z-score: 1206.6 E(): 2.6e-59 Smith-Waterman score: 1012; 43.577identity in 397 aa overlap.
SNP326241 | 1196645 | 1157582 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1180 | conserved hypothetical protein, pseudogene | N\A | template | 1196330 | 1196653 |  | Similar to Q8EXW1 Conserved hypothetical protein from Leptospira interrogans (250 aa). FASTA: opt: 528 Z-score: 655.2 E(): 1.3e-28 Smith-Waterman score: 528; 34.711 identity in 242 aa overlap. Contains an in-frame stop codon after aa 107 ORF ftt1180
SNP69942 | 1196905 | 1157842 | A | T | L | F | aliphatic, hydrophobic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1180 | conserved hypothetical protein, pseudogene | N\A | template | 1196654 | 1197085 |  | Similar to Q8EXW1 Conserved hypothetical protein from Leptospira interrogans (250 aa). FASTA: opt: 528 Z-score: 655.2 E(): 1.3e-28 Smith-Waterman score: 528; 34.711 identity in 242 aa overlap. Contains an in-frame stop codon after aa 107 ORF ftt1180
[NAME] | 1207883 | 1168814 | C | A | S | Y | polar, hydrophilic, neutral | aromatic, hydrophobic, polar | Non-Conservative | MglA-regulated [15] | FTT1191 | Aminoacylase | N\A | template | 1207486 | 1208646 | 3.5.1.14 | Similar to Q8RFU4 N-acyl-L-amino acid amidohydrolase from Fusobacterium nucleatum (subsp. nucleatum) (393 aa). FASTA: opt: 945 Z-score: 1170.3 E(): 2.7e-57 Smith-Waterman score: 945; 38.259 identity in 379 aa overlap. ORF ftt1191
SNP61219 | 1212229 | 1171979 | T | C | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | MglA-regulated [15] | FTT1195c | conserved hypothetical protein, pseudogene | N\A | complement | 1211450 | 1212727 |  | Similar to Q88JG1 Conserved hypothetical protein from Pseudomonas putida (strain KT2440) (469 aa). FASTA: opt: 1631 Z-score: 1944.7 E(): 2e-100 Smith-Waterman score: 1631; 52.903 identity in 465 aa overlap. Contains a frameshift at aa 59. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift ORF ftt1195c
SNP61770 | 1212273 | 1172023 | A | C | I | R | aliphatic, hydrophobic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1195c | conserved hypothetical protein, pseudogene | N\A | complement | 1211450 | 1212727 |  | Similar to Q88JG1 Conserved hypothetical protein from Pseudomonas putida (strain KT2440) (469 aa). FASTA: opt: 1631 Z-score: 1944.7 E(): 2e-100 Smith-Waterman score: 1631; 52.903 identity in 465 aa overlap. Contains a frameshift at aa 59. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift ORF ftt1195c
SNP20813 | 1212631 | 1172381 | A | G | C | R | polar, hydrophobic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1195c | conserved hypothetical protein, pseudogene | N\A | complement | 1211450 | 1212727 |  | Similar to Q88JG1 Conserved hypothetical protein from Pseudomonas putida (strain KT2440) (469 aa). FASTA: opt: 1631 Z-score: 1944.7 E(): 2e-100 Smith-Waterman score: 1631; 52.903 identity in 465 aa overlap. Contains a frameshift at aa 59. Frameshift occurs at a heptanucleotide sequence and so could be part of a programmed translational frameshift ORF ftt1195c
[NAME] | 1227918 | 1187667 | T | C | * | W |  | aromatic, hydrophobic, neutral | UnStop | MglA-regulated [15] | FTT1209c | metallopeptidase family [NAME] protein, pseudogene | N\A | complement | 1227917 | 1229839 | 3.4.24.- | Similar to Q8EAQ3 Peptidase, [NAME] family from Shewanella oneidensis (694 aa). FASTA: opt: 1942 Z-score: 2116.8 E(): 4.7e-110 Smith-Waterman score: 1942; 44.688 identity in 640 aa overlap. This CDS lacks a start codon due to an interruption of an ISFtu1 element at the N-terminal end ORF ftt1209c
SNP184597 | 1228717 | 1188461 | A | G | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1209c | metallopeptidase family [NAME] protein, pseudogene | N\A | complement | 1227917 | 1229839 | 3.4.24.- | Similar to Q8EAQ3 Peptidase, [NAME] family from Shewanella oneidensis (694 aa). FASTA: opt: 1942 Z-score: 2116.8 E(): 4.7e-110 Smith-Waterman score: 1942; 44.688 identity in 640 aa overlap. This CDS lacks a start codon due to an interruption of an ISFtu1 element at the N-terminal end ORF ftt1209c
SNP343357 | 1228764 | 1188508 | T | G | K | T | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1209c | metallopeptidase family [NAME] protein, pseudogene | N\A | complement | 1227917 | 1229839 | 3.4.24.- | Similar to Q8EAQ3 Peptidase, [NAME] family from Shewanella oneidensis (694 aa). FASTA: opt: 1942 Z-score: 2116.8 E(): 4.7e-110 Smith-Waterman score: 1942; 44.688 identity in 640 aa overlap. This CDS lacks a start codon due to an interruption of an ISFtu1 element at the N-terminal end ORF ftt1209c
SNP282148 | 1229187 | 1188931 | G | A | S | L | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1209c | metallopeptidase family [NAME] protein, pseudogene | N\A | complement | 1227917 | 1229839 | 3.4.24.- | Similar to Q8EAQ3 Peptidase, [NAME] family from Shewanella oneidensis (694 aa). FASTA: opt: 1942 Z-score: 2116.8 E(): 4.7e-110 Smith-Waterman score: 1942; 44.688 identity in 640 aa overlap. This CDS lacks a start codon due to an interruption of an ISFtu1 element at the N-terminal end ORF ftt1209c
SNP254636 | 1229797 | 1189541 | T | C | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT1209c | metallopeptidase family [NAME] protein, pseudogene | N\A | complement | 1227917 | 1229839 | 3.4.24.- | Similar to Q8EAQ3 Peptidase, [NAME] family from Shewanella oneidensis (694 aa). FASTA: opt: 1942 Z-score: 2116.8 E(): 4.7e-110 Smith-Waterman score: 1942; 44.688 identity in 640 aa overlap. This CDS lacks a start codon due to an interruption of an ISFtu1 element at the N-terminal end ORF ftt1209c
[NAME] | 1305498 | 552551 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1287 | cystathionine beta-synthase (cystein synthase) | cbs | template | 1305452 | 1306375 | 4.2.1.22 | Similar to Q9BH24 Cystathionine beta-synthase 5 from Trypanosoma cruzi (384 aa). FASTA: opt: 540 Z-score: 651.0 E(): 2.3e-28 Smith-Waterman score: 542; 31.494 identity in 308 aa overlap.
SNP31605 | 1305845 | 552204 | G | A | D | N | polar, hydrophilic, charged(-) | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1287 | cystathionine beta-synthase (cystein synthase) | cbs | template | 1305452 | 1306375 | 4.2.1.22 | Similar to Q9BH24 Cystathionine beta-synthase 5 from Trypanosoma cruzi (384 aa). FASTA: opt: 540 Z-score: 651.0 E(): 2.3e-28 Smith-Waterman score: 542; 31.494 identity in 308 aa overlap.
SNP273972 | 1306085 | 551964 | T | C | Y | H | aromatic, hydrophobic, polar | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1287 | cystathionine beta-synthase (cystein synthase) | cbs | template | 1305452 | 1306375 | 4.2.1.22 | Similar to Q9BH24 Cystathionine beta-synthase 5 from Trypanosoma cruzi (384 aa). FASTA: opt: 540 Z-score: 651.0 E(): 2.3e-28 Smith-Waterman score: 542; 31.494 identity in 308 aa overlap.
[NAME] | 1306677 | 551364 | G | A | E | K | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1288 | conserved hypothetical membrane protein | N\A | template | 1306629 | 1307198 |  | Similar to Q8Z651 Putative membrane protein from Salmonella typhi (204 aa). FASTA: opt: 462 Z-score: 553.9 E(): 5.9e-23 Smith-Waterman score: 462; 36.667 identity in 180 aa overlap. ORF ftt1288
SNP322238 | 1398787 | 526376 | T | A | R | S | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1357c | intracellular growth locus, subunit C | iglC | complement | 1398673 | 1399308 |  | Similar to AAP58964.1 (Q7X3J5) IglC (23 [NAME] protein) from Francisella novicida (211 aa). BLAST Score = 405, Expect = e-112 Identities = 209/211 (99), Positives = 210/211 (99) Identical to FTT1712. It is part of the duplicated region 1374371..1408281 which is identical to 1767715..1801625
SNP159920 | 1399141 | 526022 | A | C | D | E | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(-) | Conservative | MglA-regulated [15] | FTT1357c | intracellular growth locus, subunit C | iglC | complement | 1398673 | 1399308 |  | Similar to AAP58964.1 (Q7X3J5) IglC (23 [NAME] protein) from Francisella novicida (211 aa). BLAST Score = 405, Expect = e-112 Identities = 209/211 (99), Positives = 210/211 (99) Identical to FTT1712. It is part of the duplicated region 1374371..1408281 which is identical to 1767715..1801625
SNP33069 | 1399456 | 525707 | C | T | E | K | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1358c | intracellular growth locus, subunit B | iglB | complement | 1399319 | 1400863 |  | Similar to AAP58963.1 (Q7X3J4) IglB from Francisella novicida (514 aa). BLAST Score = 997, Expect = 0.0 Identities = 496/514 (96), Positives = 499/514 (97) Identical to FTT1713. It is part of the duplicated region 1374371..1408281 which is identical to 1767715..1801625
SNP167429 | 1433679 | 491463 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1388 | hypothetical protein | N\A | template | 1433568 | 1434284 |  | Similar to AAO81619 (Q833S4) Conserved domain protein from Enterococcus faecalis (281 aa). FASTA: opt: 171 Z-score: 214.0 E(): 0.00046 Smith-Waterman score: 194;26.337 identity in 243 aa overlap ORF ftt1388
SNP117572 | 1434253 | 490889 | T | C | V | A | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT1388 | hypothetical protein | N\A | template | 1433568 | 1434284 |  | Similar to AAO81619 (Q833S4) Conserved domain protein from Enterococcus faecalis (281 aa). FASTA: opt: 171 Z-score: 214.0 E(): 0.00046 Smith-Waterman score: 194;26.337 identity in 243 aa overlap ORF ftt1388
SNP170652 | 1587600 | 396769 | A | G | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1529 | Acyl-CoA dehydrogenase | fadE | template | 1587217 | 1589478 | 1.3.99.3 | Similar to Q87QC0 Oxidoreductase, acyl-CoA dehydrogenase from Vibrio parahaemolyticus (760 aa). FASTA: opt: 2322 Z-score: 2681.1 E(): 1.7e-141 Smith-Waterman score: 2333; 46.817 identity in 754 aa overlap
SNP336371 | 1598735 | 385638 | A | G | Y | H | aromatic, hydrophobic, polar | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | FTT1536c | hypothetical protein | N\A | complement | 1598415 | 1599329 |  | Similar to Q8RGP8 Hypothetical protein from Mycoplasma penetrans (310 aa). FASTA: opt: 805 Z-score: 956.1 E(): 2.1e-45 Smith-Waterman score: 805; 42.308 identity in 312 aa overlap ORF ftt1536c
SNP125465 | 1599279 | 385094 | A | C | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1536c | hypothetical protein | N\A | complement | 1598415 | 1599329 |  | Similar to Q8RGP8 Hypothetical protein from Mycoplasma penetrans (310 aa). FASTA: opt: 805 Z-score: 956.1 E(): 2.1e-45 Smith-Waterman score: 805; 42.308 identity in 312 aa overlap ORF ftt1536c
SNP132056 | 1717896 | 1848326 | T | C | N | S | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | MglA-regulated [15] | FTT1650c | chorismate mutase | N\A | complement | 1717577 | 1718125 | 5.4.99.5 | Similar to Q93LJ4 Periplasmic monofunctional chorismate mutase from Salmonella typhimurium (181 aa). FASTA: opt: 186 Z-score: 223.0 E(): 0.00014 Smith-Waterman score: 186; 31.746 identity in 126 aa overlap ORF ftt1650
SNP153020 | 1718031 | 1848191 | G | A | A | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT1650c | chorismate mutase | N\A | complement | 1717577 | 1718125 | 5.4.99.5 | Similar to Q93LJ4 Periplasmic monofunctional chorismate mutase from Salmonella typhimurium (181 aa). FASTA: opt: 186 Z-score: 223.0 E(): 0.00014 Smith-Waterman score: 186; 31.746 identity in 126 aa overlap ORF ftt1650
SNP97029 | 1750211 | 1816165 | G | A | R | H | polar, hydrophilic, charged(+) | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | [NAME] | conserved hypothetical protein, pseudogene | N\A | template | 1750192 | 1750893 |  | Similar to AAP08939 (Q81EK2) Hypothetical protein from Bacillus cereus (755 aa). FASTA: opt: 1438 Z-score: 1569.7 E(): 1.4e-79 Smith-Waterman score: 1459; 32.429 identity in 737 aa overlap. Contains a frameshift after aa 234 and an in-frame stop codon after aa 314 ORF ftt1682
SNP178929 | 1750261 | 1816116 | C | T | P | S | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | [NAME] | conserved hypothetical protein, pseudogene | N\A | template | 1750192 | 1750893 |  | Similar to AAP08939 (Q81EK2) Hypothetical protein from Bacillus cereus (755 aa). FASTA: opt: 1438 Z-score: 1569.7 E(): 1.4e-79 Smith-Waterman score: 1459; 32.429 identity in 737 aa overlap. Contains a frameshift after aa 234 and an in-frame stop codon after aa 314 ORF ftt1682
SNP216477 | 1751390 | 1814987 | G | A | E | K | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(+) | Non-Conservative | MglA-regulated [15] | [NAME] | conserved hypothetical protein, pseudogene | N\A | template | 1751138 | 1752499 |  | Similar to AAP08939 (Q81EK2) Hypothetical protein from Bacillus cereus (755 aa). FASTA: opt: 1438 Z-score: 1569.7 E(): 1.4e-79 Smith-Waterman score: 1459; 32.429 identity in 737 aa overlap. Contains a frameshift after aa 234 and an in-frame stop codon after aa 314 ORF ftt1682
SNP207796 | 1751980 | 1814397 | A | G | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | [NAME] | conserved hypothetical protein, pseudogene | N\A | template | 1751138 | 1752499 |  | Similar to AAP08939 (Q81EK2) Hypothetical protein from Bacillus cereus (755 aa). FASTA: opt: 1438 Z-score: 1569.7 E(): 1.4e-79 Smith-Waterman score: 1459; 32.429 identity in 737 aa overlap. Contains a frameshift after aa 234 and an in-frame stop codon after aa 314 ORF ftt1682
[NAME] | 1752443 | 1813934 | G | A | V | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | [NAME] | conserved hypothetical protein, pseudogene | N\A | template | 1751138 | 1752499 |  | Similar to AAP08939 (Q81EK2) Hypothetical protein from Bacillus cereus (755 aa). FASTA: opt: 1438 Z-score: 1569.7 E(): 1.4e-79 Smith-Waterman score: 1459; 32.429 identity in 737 aa overlap. Contains a frameshift after aa 234 and an in-frame stop codon after aa 314 ORF ftt1682
SNP165986 | 1822773 | 71878 | C | A | G | V | aliphatic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1734c | outer membrane associated protein, fragment | fopA1 | complement | 1822616 | 1823044 |  | Similar to Q47938 Outer membrane protein from Francisella tularensis (336 aa). FASTA: opt: 516 Z-score: 592.2 E(): 3.9e-25 Smith-Waterman score: 516; 41.589 identity in 214 aa overlap. Contains an in-frame stop codon after aa 71 and truncation at C-terminal according to FASTA hits No transmembrane helix predicted.
SNP261837 | 1822891 | 71760 | C | T | G | S | aliphatic, neutral | polar, hydrophilic, neutral | Non-Conservative | MglA-regulated [15] | FTT1734c | outer membrane associated protein, fragment | fopA1 | complement | 1822616 | 1823044 |  | Similar to Q47938 Outer membrane protein from Francisella tularensis (336 aa). FASTA: opt: 516 Z-score: 592.2 E(): 3.9e-25 Smith-Waterman score: 516; 41.589 identity in 214 aa overlap. Contains an in-frame stop codon after aa 71 and truncation at C-terminal according to FASTA hits No transmembrane helix predicted.
SNP192743 | 1831644 | 62889 | T | C | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | MglA-regulated [15] | FTT1741c | NAD-dependent formate dehydrogenase, fragment | N\A | complement | 1831354 | 1831794 |  | Similar to Q9F7P9 Predicted NAD-dependent formate dehydrenase from [NAME]-proteobacterium EBAC31A08 (398 aa). FASTA: opt: 740 Z-score: 987.4 E(): 4.2e-47 Smith-Waterman score: 740; 72.464 identity in 138 aa overlap. This CDS has no start codon due to truncation at N-terminal by the insertion of an ISFtu1 element ORF ftt1741c
SNP41422 | 1844263 | 1869786 | A | G | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | MglA-regulated [15] | FTT1755 | Succinate-semialdehyde dehydrogenase,pseudogene | gabD2 | template | 1843799 | 1844503 |  | Similar to Q9SEK4 Succinic semialdehyde dehydrogenase from Arabidopsis thaliana (528 aa). FASTA: opt: 938 bits: 211.9 E(): 3e-53 Smith-Waterman score: 938; 53.381 identity in a 281 aa overlap. Contains a frameshift after aa 225. This CDS is also disrupted by the insertion of an ISFtu1 element occurring very near the C-terminal end.
SNP24669 | 1861433 | 11374 | A | G | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | MglA-regulated [15] | FTT1771 | hypothetical protein | N\A | template | 1861370 | 1861723 |  | ORF ftt1771
SNP202772 | 368398 | 1613876 | G | T | P | H | hydrophobic, neutral | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0368c | virulence factor MviN | mviN | complement | 368190 | 369734 |  | Similar to [NAME] (Q83ED5) Integral membrane protein MviN from Coxiella burnetii (515 aa). FASTA: opt: 836 Z-score: 887.1 E(): 1.6e-41 Smith-Waterman score: 836; 30.452 identity in 509 aa overlap
SNP270580 | 26754 | 111646 | T | A | L | F | aliphatic, hydrophobic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0027c | diaminopimelate decarboxylase | lysA | complement | 25842 | 27095 | 4.1.1.20 | Similar to DCDA_BACSU (P23630) Diaminopimelate decarboxylase from Bacillus subtilis (441 aa). FASTA: opt: 437 Z-score: 538.0 E(): 4.5e-22 Smith-Waterman score: 437; 27.295 identity in 414 aa overlap
[NAME] | 26987 | 111879 | C | T | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0027c | diaminopimelate decarboxylase | lysA | complement | 25842 | 27095 | 4.1.1.20 | Similar to DCDA_BACSU (P23630) Diaminopimelate decarboxylase from Bacillus subtilis (441 aa). FASTA: opt: 437 Z-score: 538.0 E(): 4.5e-22 Smith-Waterman score: 437; 27.295 identity in 414 aa overlap
SNP326728 | 29478 | 114370 | C | T | E | K | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | [NAME] | hypothetical protein | N\A | complement | 28357 | 30276 |  | Similar to AAO89973 (Q83EA5) FrgA protein from Coxiella burnetii (528 aa). FASTA: opt: 1047 Z-score: 1237.4 E(): 4.9e-61 Smith-Waterman score: 1053; 34.051 identity in 511 aa overlap ORF ftt0029c
SNP248369 | 30201 | 115093 | C | T | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | [NAME] | hypothetical protein | N\A | complement | 28357 | 30276 |  | Similar to AAO89973 (Q83EA5) FrgA protein from Coxiella burnetii (528 aa). FASTA: opt: 1047 Z-score: 1237.4 E(): 4.9e-61 Smith-Waterman score: 1053; 34.051 identity in 511 aa overlap ORF ftt0029c
SNP246980 | 66903 | 151804 | C | T | P | L | hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0066 | hypothetical protein | N\A | template | 66836 | 69679 |  | ORF ftt0066
SNP36475 | 67979 | 152880 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0066 | hypothetical protein | N\A | template | 66836 | 69679 |  | ORF ftt0066
SNP190928 | 68960 | 153861 | T | G | S | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0066 | hypothetical protein | N\A | template | 66836 | 69679 |  | ORF ftt0066
SNP98713 | 69138 | 154039 | G | A | G | D | aliphatic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0066 | hypothetical protein | N\A | template | 66836 | 69679 |  | ORF ftt0066
SNP139623 | 86699 | 171597 | A | G | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0084c | Oxygen-independent coproporphyrinogen III oxidase | hemN | complement | 86193 | 87335 |  | Similar to Q87V87 Oxygen-independent coproporphyrinogen III oxidase,putative,from Pseudomonas syringae (404 aa). FASTA: opt: 1156 Z-score: 1386.6 E(): 2.4e-69 Smith-Waterman score: 1156; 46.791 identity in 374 aa overlap
SNP307017 | 86903 | 171801 | C | T | E | K | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0084c | Oxygen-independent coproporphyrinogen III oxidase | hemN | complement | 86193 | 87335 |  | Similar to Q87V87 Oxygen-independent coproporphyrinogen III oxidase,putative,from Pseudomonas syringae (404 aa). FASTA: opt: 1156 Z-score: 1386.6 E(): 2.4e-69 Smith-Waterman score: 1156; 46.791 identity in 374 aa overlap
SNP101496 | 98117 | 183015 | G | A | S | F | polar, hydrophilic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0094c | sensor histidine kinase | [NAME] | complement | 97681 | 99108 | 2.7.3.- | Similar to AAO90737 (Q83CA0) Sensor histidine kinase from Coxiella burnetii (478 aa). FASTA: opt: 653 Z-score: 752.8 E(): 4.9e-34 Smith-Waterman score: 677; 29.083 identity in 447 aa overlap Sensory histidine kinase in two-component regulatory system with QseB, regulates flagella and motility by quorum sensing in E. coli, according to Q8X524
SNP132247 | 109256 | 193893 | A | G | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0105c | Transporter AcrB/AcrD/AcrF family | N\A | complement | 109207 | 112320 |  | Similar to AAO90606 (Q83CM1) [NAME],AcrB/AcrD/AcrF family from Coxiella burnetii (1019 aa). FASTA: opt: 2662 Z-score: 2840.6 E(): 2.3e-150 Smith-Waterman score: 3071; 45.171identity in 1025 aa overlap ORF ftt0105c
SNP20074 | 110526 | 195163 | T | C | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0105c | Transporter AcrB/AcrD/AcrF family | N\A | complement | 109207 | 112320 |  | Similar to AAO90606 (Q83CM1) [NAME],AcrB/AcrD/AcrF family from Coxiella burnetii (1019 aa). FASTA: opt: 2662 Z-score: 2840.6 E(): 2.3e-150 Smith-Waterman score: 3071; 45.171identity in 1025 aa overlap ORF ftt0105c
[NAME] | 112433 | 197070 | G | A | P | S | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0106c | Efflux protein, [NAME] family, MFP subunit | N\A | complement | 112320 | 113693 |  | Similar to Q83CM0 Efflux transporter, [NAME] family, MFP subunit from Coxiella burnetti (380 aa). FASTA: opt: 732 Z-score: 824.0 E(): 5.2e-38 Smith-Waterman score: 781; 34.748identity in 377 aa overlap ORF ftt0106c
SNP341413 | 113000 | 197637 | T | C | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0106c | Efflux protein, [NAME] family, MFP subunit | N\A | complement | 112320 | 113693 |  | Similar to Q83CM0 Efflux transporter, [NAME] family, MFP subunit from Coxiella burnetti (380 aa). FASTA: opt: 732 Z-score: 824.0 E(): 5.2e-38 Smith-Waterman score: 781; 34.748identity in 377 aa overlap ORF ftt0106c
SNP247232 | 113441 | 198078 | T | C | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT0106c | Efflux protein, [NAME] family, MFP subunit | N\A | complement | 112320 | 113693 |  | Similar to Q83CM0 Efflux transporter, [NAME] family, MFP subunit from Coxiella burnetti (380 aa). FASTA: opt: 732 Z-score: 824.0 E(): 5.2e-38 Smith-Waterman score: 781; 34.748identity in 377 aa overlap ORF ftt0106c
SNP138551 | 115905 | 200542 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0109 | Lipid A transport protein, ABC transporter,ATP-binding and membrane protein | valA | template | 115424 | 117253 |  | lipid A transport protein, ABC transporter,ATP-binding and membrane protein. Similar to Q47908 ValA from Francisella novicida strain U112 (572 aa). FASTA: opt: 3334 Z-score: 3684.8 E(): 2.4e-197 Smith-Waterman score: 3334; 97.810 identity in 548 aa overlap (54-601:13-559). Similar to MSBA_HAEIN (P44407) Lipid A export ATP-binding protein from Haemophilus influenzae (587 aa). FASTA: opt: 1570 Z-score: 1735.1 E(): 9.4e-89 Smith-Waterman score: 1570; 41.913identity in 575 aa overlap.
SNP334134 | 135770 | 220408 | A | G | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0124 | oligopeptide transporter, subunit C, ABC transporter, membrane protein, pseudogene | oppC | template | 135753 | 135974 |  | Similar to Q87MY7 Oligopeptide ABC transporter,permease frim [NAME] parahaemolyticus (300 aa). FASTA: opt: 1042 Z-score: 1224.8 E(): 2.3e-60 Smith-Waterman score: 1042; 52.857 identity in 280 aa overlap. Contains no start codon and a frameshift after aa 74
SNP133695 | 151853 | 236304 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | [NAME] | preprotein translocase, subunit E, membrane protein | secE | template | 151421 | 151891 |  | Similar to Q83ET6 [NAME] translocase, SecE subunit from Coxiella burnetii (127 aa). FASTA: 209 opt: 252 Z-score: 317.1 E(): 9e-10 Smith-Waterman score: 252; 37.795identity in 127 aa overlap Together with [NAME] and SecY forming an integral membrane complex.
SNP222767 | 171111 | 255562 | G | T | A | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0155 | oxidoreductase iron/ascorbate family protein | N\A | template | 171078 | 171929 | 1.14.11.- | Similar to Q87HU0 Putative oxidoreductase iron/ascorbate from Vibrio parahaemolyticus (279 aa). FASTA: opt: 944 Z-score: 1155.0 E(): 1.9e-56 Smith-Waterman score: 944; 49.110 identity in 281 aa overlap ORF ftt0155
SNP5867 | 201094 | 1790280 | C | T | H | Y | aromatic, polar, hydrophilic, charged(+) | aromatic, hydrophobic, polar | Non-Conservative | Petrosino [12] | FTT0185 | D-alanine--D-alanine ligase B | ddlB | template | 200770 | 201660 | 6.3.2.4 | Similar to Q88N74 (Q88N74) D-alanine--D-alanine ligase B from Pseudomonas putida (318 aa). FASTA: opt: 761 Z-score: 911.3 E(): 7.3e-43 Smith-Waterman score: 761; 41.892 identity in 296 aa overlap
SNP152755 | 238001 | 1725171 | A | G | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0221 | acid phosphatase (precursor) | acpA | template | 237887 | 239431 | 3.1.4.3
SNP364415 | 240258 | 1727427 | A | G | * | Q |  | polar, hydrophilic, neutral | UnStop | Petrosino [12] | FTT0223c | lactam utilization protein | ybgL | complement | 240256 | 240954 |  | Similar to Y993_PYRAB (Q9V005) Hypothetical UPF0271 protein PYRAB09930 from [NAME] abyssi (255 aa). FASTA: opt: 430 Z-score: 541.0 E(): 3e-22 Smith-Waterman score: 430; 35.294 identity in 238 aa overlap
SNP349518 | 258863 | 1731406 | A | G | Y | C | aromatic, hydrophobic, polar | polar, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0245 | universal stress protein | usp | template | 258373 | 259209 |  | Similar to Q8PWX4 Universal stress protein from Methanosarcina maizae (323 aa). FASTA: opt: 347 Z-score: 418.2 E(): 2.1e-15 Smith-Waterman score: 347; 31.849 identity in 292 aa overlap
SNP181560 | 262991 | 1749857 | C | G | T | R | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0249 | ferrous iron transport protein | feoB | template | 260995 | 263238 |  | Similar to Q8ZJH5 Ferrous iron transport protein B from Yersinia pestis (771 aa). FASTA: opt: 1928 Z-score: 2034.7 E(): 1.9e-105 Smith-Waterman score: 2307; 45.396 identity in 771 aa overlap
[NAME] | 263126 | 1749992 | C | T | A | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0249 | ferrous iron transport protein | feoB | template | 260995 | 263238 |  | Similar to Q8ZJH5 Ferrous iron transport protein B from Yersinia pestis (771 aa). FASTA: opt: 1928 Z-score: 2034.7 E(): 1.9e-105 Smith-Waterman score: 2307; 45.396 identity in 771 aa overlap
[NAME] | 276104 | 1709964 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0259 | hydroxymethylbilane synthase (porphobilinogen deaminase) | [NAME] | template | 276044 | 276946 | 2.5.1.61 | Similar to HEM3_ECOLI (P06983) Porphobilinogen deaminase from E.coli (313 aa). FASTA: opt: 991 Z-score: 1221.3 E(): 3.9e-60 Smith-Waterman score: 991; 54.698identity in 298 aa overlap
SNP67345 | 276123 | 1709983 | T | C | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0259 | hydroxymethylbilane synthase (porphobilinogen deaminase) | [NAME] | template | 276044 | 276946 | 2.5.1.61 | Similar to HEM3_ECOLI (P06983) Porphobilinogen deaminase from E.coli (313 aa). FASTA: opt: 991 Z-score: 1221.3 E(): 3.9e-60 Smith-Waterman score: 991; 54.698identity in 298 aa overlap
SNP344568 | 285912 | 1720083 | T | C | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0270 | lipoprotein releasing system, subunit B, outer membrane lipoprotein | lolB | template | 285584 | 286219 |  | Similar to Q83AQ2 Outer membrane [NAME],putative from Coxiella burnetii (210 aa). FASTA: opt: 395 Z-score: 508.7 E(): 1.9e-20 Smith-Waterman score: 395; 33.668 identity in 199 aa overlap
SNP149541 | 301097 | 1690572 | C | T | D | N | polar, hydrophilic, charged(-) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0286c | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | lpxD1 | complement | 300609 | 301652 | 2.3.1.- | Similar to Q8A014 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase from Bacteroides thetaiotaomicron (346 aa). FASTA: opt: 687 Z-score: 795.8 E(): 2e-36 Smith-Waterman score: 687; 33.431 identity in 341 aa overlap paralog of FTT1571
SNP7328 | 301120 | 1690549 | C | T | C | Y | polar, hydrophobic, neutral | aromatic, hydrophobic, polar | Non-Conservative | Petrosino [12] | FTT0286c | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | lpxD1 | complement | 300609 | 301652 | 2.3.1.- | Similar to Q8A014 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase from Bacteroides thetaiotaomicron (346 aa). FASTA: opt: 687 Z-score: 795.8 E(): 2e-36 Smith-Waterman score: 687; 33.431 identity in 341 aa overlap paralog of FTT1571
SNP14188 | 301162 | 1690507 | A | G | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0286c | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | lpxD1 | complement | 300609 | 301652 | 2.3.1.- | Similar to Q8A014 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase from Bacteroides thetaiotaomicron (346 aa). FASTA: opt: 687 Z-score: 795.8 E(): 2e-36 Smith-Waterman score: 687; 33.431 identity in 341 aa overlap paralog of FTT1571
SNP140224 | 301277 | 1690392 | T | C | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT0286c | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | lpxD1 | complement | 300609 | 301652 | 2.3.1.- | Similar to Q8A014 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase from Bacteroides thetaiotaomicron (346 aa). FASTA: opt: 687 Z-score: 795.8 E(): 2e-36 Smith-Waterman score: 687; 33.431 identity in 341 aa overlap paralog of FTT1571
SNP71638 | 301564 | 1690105 | G | T | T | N | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Petrosino [12] | FTT0286c | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | lpxD1 | complement | 300609 | 301652 | 2.3.1.- | Similar to Q8A014 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase from Bacteroides thetaiotaomicron (346 aa). FASTA: opt: 687 Z-score: 795.8 E(): 2e-36 Smith-Waterman score: 687; 33.431 identity in 341 aa overlap paralog of FTT1571
[NAME] | 346697 | 1645180 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0345 | preprotein translocase, subunit Y, membrane protein | secY | template | 346535 | 347860 |  | Similar to SECY_ECOLI (P03844) [NAME] translocase secY subunit from Escherichia coli (443 aa). FASTA: opt: 1706 Z-score: 1921.6 E(): 3.8e-99 Smith-Waterman score: 1706; 59.497 identity in 437 aa overlap Together with SecE and [NAME] forming an integral membrane complex.
SNP225974 | 355767 | 1638290 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0356 | Chaperone Hsp90, heat shock protein HtpG | htpG | template | 355152 | 357038 |  | Similar to AAO89866 (Q83EL0) Heat shock protein HtpG from Coxiella burnetii (633 aa). FASTA: opt: 2277 Z-score: 2422.9 bits: 458.5 E(): 4.6e-127 Smith-Waterman score: 2277; 54.792 identity in 626 aa overlap
SNP140703 | 356629 | 1639152 | G | A | R | K | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Conservative | Petrosino [12] | FTT0356 | Chaperone Hsp90, heat shock protein HtpG | htpG | template | 355152 | 357038 |  | Similar to AAO89866 (Q83EL0) Heat shock protein HtpG from Coxiella burnetii (633 aa). FASTA: opt: 2277 Z-score: 2422.9 bits: 458.5 E(): 4.6e-127 Smith-Waterman score: 2277; 54.792 identity in 626 aa overlap
[NAME] | 448081 | 1544402 | A | T | K | N | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0434 | hypothetical protein | N\A | template | 447896 | 448882 |  | Similar to Q8KCB6 Hypothetical protein CT1508 from Chlorobium tepidum (347 aa). FASTA: opt: 742 Z-score: 939.4 E(): 2e-44 Smith-Waterman score: 837; 38.484 identity in 343 aa overlap PAD_porph is a possible virulence factor for P. gingivalis: PMID: 10377098 ORF ftt0434
SNP229083 | 448491 | 1543992 | G | A | R | H | polar, hydrophilic, charged(+) | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0434 | hypothetical protein | N\A | template | 447896 | 448882 |  | Similar to Q8KCB6 Hypothetical protein CT1508 from Chlorobium tepidum (347 aa). FASTA: opt: 742 Z-score: 939.4 E(): 2e-44 Smith-Waterman score: 837; 38.484 identity in 343 aa overlap PAD_porph is a possible virulence factor for P. gingivalis: PMID: 10377098 ORF ftt0434
SNP34988 | 448652 | 1543831 | C | A | Q | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0434 | hypothetical protein | N\A | template | 447896 | 448882 |  | Similar to Q8KCB6 Hypothetical protein CT1508 from Chlorobium tepidum (347 aa). FASTA: opt: 742 Z-score: 939.4 E(): 2e-44 Smith-Waterman score: 837; 38.484 identity in 343 aa overlap PAD_porph is a possible virulence factor for P. gingivalis: PMID: 10377098 ORF ftt0434
[NAME] | 449772 | 1542711 | C | T | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0436c | UDP-2,3-diacylglucosamine hydrolase | lpxH | complement | 449761 | 450477 | 3.6.1.- | Similar to Q87YP9 UDP-2,3-diacylglucosamine hydrolase from Pseudomonas syringae (248 aa). FASTA: 374 opt: 569 Z-score: 703.6 bits: 137.6 E(): 2.7e-31 Smith-Waterman score: 569; 38.528 identity (40.0900ngapped) in 231 aa overlap (7-229:2-231)
SNP335584 | 449912 | 1542571 | T | C | Y | C | aromatic, hydrophobic, polar | polar, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0436c | UDP-2,3-diacylglucosamine hydrolase | lpxH | complement | 449761 | 450477 | 3.6.1.- | Similar to Q87YP9 UDP-2,3-diacylglucosamine hydrolase from Pseudomonas syringae (248 aa). FASTA: 374 opt: 569 Z-score: 703.6 bits: 137.6 E(): 2.7e-31 Smith-Waterman score: 569; 38.528 identity (40.0900ngapped) in 231 aa overlap (7-229:2-231)
SNP30496 | 484865 | 1507659 | A | G | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0467 | organic solvent tolerance protein | ostA1 | template | 483861 | 486467 |  | Similar to OSTA_XYLFT (Q87AI9) Organic solvent tolerance protein from [NAME] fastidiosa (792 aa). FASTA: opt: 700 Z-score: 808.7 E(): 3.7e-37 Smith-Waterman score: 775; 26.572 identity in 636 aa overlap
SNP91926 | 485058 | 1507466 | G | A | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0467 | organic solvent tolerance protein | ostA1 | template | 483861 | 486467 |  | Similar to OSTA_XYLFT (Q87AI9) Organic solvent tolerance protein from [NAME] fastidiosa (792 aa). FASTA: opt: 700 Z-score: 808.7 E(): 3.7e-37 Smith-Waterman score: 775; 26.572 identity in 636 aa overlap
SNP229984 | 487358 | 1505166 | T | G | Y | D | aromatic, hydrophobic, polar | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0468 | Peptidyl-prolyl cis-trans isomerase (PPIase) | surA | template | 486449 | 487870 | 5.2.1.8 | Similar to Q8ZIK4 Survival protein SurA (Peptidyl-prolyl cis-trans isomerase) from Yersinia pestis (434 aa). FASTA: opt: 532 Z-score: 586.9 E(): 8.4e-25 Smith-Waterman score: 532; 25.176 identity in 425 aa overlap
SNP26358 | 487569 | 1504955 | A | G | K | R | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Conservative | Petrosino [12] | FTT0468 | Peptidyl-prolyl cis-trans isomerase (PPIase) | surA | template | 486449 | 487870 | 5.2.1.8 | Similar to Q8ZIK4 Survival protein SurA (Peptidyl-prolyl cis-trans isomerase) from Yersinia pestis (434 aa). FASTA: opt: 532 Z-score: 586.9 E(): 8.4e-25 Smith-Waterman score: 532; 25.176 identity in 425 aa overlap
SNP197386 | 487577 | 1504947 | T | G | S | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0468 | Peptidyl-prolyl cis-trans isomerase (PPIase) | surA | template | 486449 | 487870 | 5.2.1.8 | Similar to Q8ZIK4 Survival protein SurA (Peptidyl-prolyl cis-trans isomerase) from Yersinia pestis (434 aa). FASTA: opt: 532 Z-score: 586.9 E(): 8.4e-25 Smith-Waterman score: 532; 25.176 identity in 425 aa overlap
SNP188158 | 488329 | 1504195 | C | A | S | Y | polar, hydrophilic, neutral | aromatic, hydrophobic, polar | Non-Conservative | Petrosino [12] | FTT0469 | dimethyladenosine transferase , kasugamycin resistance | [NAME] | template | 487872 | 488660 | 2.1.1.- | Similar to KSGA_XYLFT (Q87C85) Dimethyladenosine transferase from [NAME] fastidiosa (strain Temecula1 / ATCC 700964) (265 aa). FASTA: opt: 686 Z-score: 828.3 E(): 3e-38 Smith-Waterman score: 686; 43.411 identity in 258 aa overlap
SNP256930 | 507049 | 1485475 | C | A | P | T | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0487 | hypothetical membrane protein | N\A | template | 507022 | 507756 |  | Similar to Q83AI9 Membrane protein,putative from Coxiella burnetii (401 aa). FASTA: 306 opt: 370 Z-score: 417.4 E(): 2.3e-15 Smith-Waterman score: 370; 30.342 identity in 234 aa overlap ORF ftt0487
[NAME] | 507193 | 1485331 | A | G | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0487 | hypothetical membrane protein | N\A | template | 507022 | 507756 |  | Similar to Q83AI9 Membrane protein,putative from Coxiella burnetii (401 aa). FASTA: 306 opt: 370 Z-score: 417.4 E(): 2.3e-15 Smith-Waterman score: 370; 30.342 identity in 234 aa overlap ORF ftt0487
SNP232367 | 507517 | 1485007 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0487 | hypothetical membrane protein | N\A | template | 507022 | 507756 |  | Similar to Q83AI9 Membrane protein,putative from Coxiella burnetii (401 aa). FASTA: 306 opt: 370 Z-score: 417.4 E(): 2.3e-15 Smith-Waterman score: 370; 30.342 identity in 234 aa overlap ORF ftt0487
SNP348357 | 507709 | 1484815 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0487 | hypothetical membrane protein | N\A | template | 507022 | 507756 |  | Similar to Q83AI9 Membrane protein,putative from Coxiella burnetii (401 aa). FASTA: 306 opt: 370 Z-score: 417.4 E(): 2.3e-15 Smith-Waterman score: 370; 30.342 identity in 234 aa overlap ORF ftt0487
SNP317039 | 509291 | 1483234 | C | T | G | D | aliphatic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0489c | thioredoxin reductase | trxB | complement | 509038 | 509988 | 1.8.1.9 | Similar to Q8ZGC9 [NAME] reductase from Yersinia pestis (320 aa). FASTA: opt: 1525 Z-score: 1798.2 E(): 2.9e-92 Smith-Waterman score: 1525; 70.927 identity in 313 aa overlap
SNP303814 | 509844 | 1482681 | A | C | Y | D | aromatic, hydrophobic, polar | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0489c | thioredoxin reductase | trxB | complement | 509038 | 509988 | 1.8.1.9 | Similar to Q8ZGC9 [NAME] reductase from Yersinia pestis (320 aa). FASTA: opt: 1525 Z-score: 1798.2 E(): 2.9e-92 Smith-Waterman score: 1525; 70.927 identity in 313 aa overlap
[NAME] | 510477 | 1482048 | T | G | N | T | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Petrosino [12] | FTT0490c | Phospholipase D family protein. | N\A | complement | 510080 | 511297 | 3.1.1.- | Similar Q888K0 Phospholipase D family protein from Pseudomonas syringae (pv. [NAME]) (422 aa). FASTA: opt: 440 Z-score: 514.4 E(): 9.2e-21 Smith-Waterman score: 440; 25.840 identity in 387 aa overlap ORF ftt0490c
SNP289161 | 554694 | 959462 | G | T | P | Q | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0533c | [NAME] | grxA | complement | 554468 | 554728 |  | Similar to GLR1_ECOLI (P00277) Glutaredoxin 1 from Escherichia coli (85 aa). FASTA: opt: 191 Z-score: 274.9 E(): 2e-07 Smith-Waterman score: 191; 40.000identity in 80 aa overlap
[NAME] | 562631 | 951525 | T | C | L | P | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0542 | AhpC/Tsa family protein, pseudogene | N\A | template | 562606 | 562929 |  | Similar to Q88NW9 Antioxidant,AhpC/Tsa family from Pseudomonas putida (200 aa). FASTA: opt: 979 Z-score: 1280.5 E(): 2e-63 Smith-Waterman score: 979; 72.680 identity in 194 aa overlap. Contains a frameshift after aa 108 unknown EC_number 1.6.4.- ORF ftt0542
SNP283684 | 563031 | 951135 | A | G | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0542 | AhpC/Tsa family protein, pseudogene | N\A | template | 562929 | 563204 |  | Similar to Q88NW9 Antioxidant,AhpC/Tsa family from Pseudomonas putida (200 aa). FASTA: opt: 979 Z-score: 1280.5 E(): 2e-63 Smith-Waterman score: 979; 72.680 identity in 194 aa overlap. Contains a frameshift after aa 108 unknown EC_number 1.6.4.- ORF ftt0542
SNP10539 | 563160 | 951016 | C | T | Q | * | polar, hydrophilic, neutral |  | Stop | Petrosino [12] | FTT0542 | AhpC/Tsa family protein, pseudogene | N\A | template | 562929 | 563204 |  | Similar to Q88NW9 Antioxidant,AhpC/Tsa family from Pseudomonas putida (200 aa). FASTA: opt: 979 Z-score: 1280.5 E(): 2e-63 Smith-Waterman score: 979; 72.680 identity in 194 aa overlap. Contains a frameshift after aa 108 unknown EC_number 1.6.4.- ORF ftt0542
SNP231210 | 591154 | 1345811 | A | G | D | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT0573 | alanine racemase | alr | template | 590358 | 591455 | 5.1.1.1 | Similar to Q81EB9 Alanine racemase from Bacillus cereus (408 aa). FASTA: opt: 573 Z-score: 679.1 E(): 6.2e-30 Smith-Waterman score: 573; 29.863 identity in 365 aa overlap
SNP271172 | 591276 | 1345689 | G | A | G | S | aliphatic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0573 | alanine racemase | alr | template | 590358 | 591455 | 5.1.1.1 | Similar to Q81EB9 Alanine racemase from Bacillus cereus (408 aa). FASTA: opt: 573 Z-score: 679.1 E(): 6.2e-30 Smith-Waterman score: 573; 29.863 identity in 365 aa overlap
SNP216403 | 642391 | 1047756 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0623 | trigger factor (TF) protein (peptidyl-prolyl cis/trans isomerase) | tig | template | 641398 | 642714 | 5.2.1.8 | Similar to Q87YR5 [NAME] factor from Pseudomonas syringae (436 aa). FASTA: opt: 1144 Z-score: 1126.0 E(): [NAME] score: 1144; 39.041 identity in 438 aa overlap. Molecular chaperone involved in cell division.
[NAME] | 643745 | 1046402 | C | T | A | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0625 | ATP-dependent [NAME] protease subunit X | clpX | template | 643369 | 644622 |  | Similar to CLPX_BACHD ATP-dependent [NAME] protease ATP-binding subunit clpX from Bacillus halodurans (424 aa). FASTA: opt: 1681 Z-score: 1809.7 E(): 6.5e-93 Smith-Waterman score: 1681; 62.189 identity in 402 aa overlap.
SNP67015 | 644158 | 1045989 | T | G | S | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0625 | ATP-dependent [NAME] protease subunit X | clpX | template | 643369 | 644622 |  | Similar to CLPX_BACHD ATP-dependent [NAME] protease ATP-binding subunit clpX from Bacillus halodurans (424 aa). FASTA: opt: 1681 Z-score: 1809.7 E(): 6.5e-93 Smith-Waterman score: 1681; 62.189 identity in 402 aa overlap.
SNP353176 | 644656 | 1045491 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0626 | DNA-binding, ATP-dependent protease La | lon | template | 644647 | 646971 | 3.4.21.53 | Similar to Q8Z8V0 Lon protease from Salmonella typhi (784 aa). FASTA: opt: 2734 Z-score: 2797.3 E(): 6.4e-148 Smith-Waterman score: 2734; 54.450 identity in 764 aa overlap.
SNP159532 | 645131 | 1045016 | T | C | M | T | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0626 | DNA-binding, ATP-dependent protease La | lon | template | 644647 | 646971 | 3.4.21.53 | Similar to Q8Z8V0 Lon protease from Salmonella typhi (784 aa). FASTA: opt: 2734 Z-score: 2797.3 E(): 6.4e-148 Smith-Waterman score: 2734; 54.450 identity in 764 aa overlap.
SNP226638 | 646715 | 1043432 | C | T | A | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0626 | DNA-binding, ATP-dependent protease La | lon | template | 644647 | 646971 | 3.4.21.53 | Similar to Q8Z8V0 Lon protease from Salmonella typhi (784 aa). FASTA: opt: 2734 Z-score: 2797.3 E(): 6.4e-148 Smith-Waterman score: 2734; 54.450 identity in 764 aa overlap.
SNP167728 | 672607 | 1017549 | A | G | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0652c | Ferritin-like protein | ftnA | complement | 672533 | 673030 |  | Similar to [NAME] from Clostridium tetani (169 aa). FASTA: opt: 527 Z-score: 679.5 E(): 5.9e-30 Smith-Waterman score: 527; 45.783identity in 166 aa overlap.
SNP197356 | 672751 | 1017403 | T | C | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0652c | Ferritin-like protein | ftnA | complement | 672533 | 673030 |  | Similar to [NAME] from Clostridium tetani (169 aa). FASTA: opt: 527 Z-score: 679.5 E(): 5.9e-30 Smith-Waterman score: 527; 45.783identity in 166 aa overlap.
SNP231609 | 673009 | 1017145 | A | C | Y | D | aromatic, hydrophobic, polar | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0652c | Ferritin-like protein | ftnA | complement | 672533 | 673030 |  | Similar to [NAME] from Clostridium tetani (169 aa). FASTA: opt: 527 Z-score: 679.5 E(): 5.9e-30 Smith-Waterman score: 527; 45.783identity in 166 aa overlap.
SNP156205 | 706776 | 983363 | T | C | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0688c | ATP-dependent protease, proteasome-related peptidase subunit | hslV | complement | 706537 | 707088 | 3.4.25.- | Similar to Q83A95 Protease HslVU, subunit HslV from Coxiella burnetii (181 aa). FASTA: opt: 699 Z-score: 897.9 E(): 4e-42 Smith-Waterman score: 699; 60.221 identity in 181 aa overlap.
SNP54243 | 725639 | 1442198 | T | G | L | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0707 | nicotinamide mononucleotide transport (NMT) family protein | N\A | template | 725384 | 726178 |  | Similar to Q9CK00 Hypothetical protein PM1838 from Pasteurella multocida (234 aa). FASTA: opt: 456 Z-score: 507.2 E(): 2.3e-20 Smith-Waterman score: 456; 34.483identity in 232 aa overlap. ORF ftt0707
SNP136638 | 735108 | 1432727 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0715 | chitinase family 18 protein | N\A | template | 734051 | 736333 | 3.2.1.- | Similar to Q9ZIX2 Chitinase c from Pseudoalteromonas sp. [NAME] (869 aa). FASTA: opt: 331 Z-score: 370.4 E(): 9.6e-13 Smith-Waterman score: 583; 24.111 identity in 900 aa overlap. The homologs are of varying sizes. ORF ftt0715
SNP292650 | 735872 | 1431963 | A | G | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0715 | chitinase family 18 protein | N\A | template | 734051 | 736333 | 3.2.1.- | Similar to Q9ZIX2 Chitinase c from Pseudoalteromonas sp. [NAME] (869 aa). FASTA: opt: 331 Z-score: 370.4 E(): 9.6e-13 Smith-Waterman score: 583; 24.111 identity in 900 aa overlap. The homologs are of varying sizes. ORF ftt0715
[NAME] | 742586 | 1425014 | C | T | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0721c | Peroxidase/catalase | [NAME] | complement | 741201 | 743426 | 1.11.1.6 | Similar to CATA_YERPE (Q9X6B0) Peroxidase/catalase (EC 1.11.1.6) from Yersinia pestis (737 aa). FASTA: opt: 3041 Z-score: 3508.0 E(): 1.7e-187 Smith-Waterman score: 3041; 59.189 identity in 740 aa overlap.
SNP62397 | 788980 | 1371904 | A | C | R | S | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0769 | preprotein translocase, subunit A, ATPase secretion protein | secA | template | 788288 | 791008 |  | Similar to Q87SF7 SecA protein from Vibrio parahaemolyticus (908 aa). FASTA: opt: 3541 Z-score: 3857.5 E(): 5.7e-207 Smith-Waterman score: 3541; 58.416 identity in 909 aa overlap.
SNP145361 | 789377 | 1371507 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0769 | preprotein translocase, subunit A, ATPase secretion protein | secA | template | 788288 | 791008 |  | Similar to Q87SF7 SecA protein from Vibrio parahaemolyticus (908 aa). FASTA: opt: 3541 Z-score: 3857.5 E(): 5.7e-207 Smith-Waterman score: 3541; 58.416 identity in 909 aa overlap.
SNP284462 | 789580 | 1371304 | A | T | R | S | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0769 | preprotein translocase, subunit A, ATPase secretion protein | secA | template | 788288 | 791008 |  | Similar to Q87SF7 SecA protein from Vibrio parahaemolyticus (908 aa). FASTA: opt: 3541 Z-score: 3857.5 E(): 5.7e-207 Smith-Waterman score: 3541; 58.416 identity in 909 aa overlap.
SNP194980 | 790088 | 1370796 | C | A | R | S | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0769 | preprotein translocase, subunit A, ATPase secretion protein | secA | template | 788288 | 791008 |  | Similar to Q87SF7 SecA protein from Vibrio parahaemolyticus (908 aa). FASTA: opt: 3541 Z-score: 3857.5 E(): 5.7e-207 Smith-Waterman score: 3541; 58.416 identity in 909 aa overlap.
SNP193126 | 790910 | 1369974 | A | C | K | Q | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0769 | preprotein translocase, subunit A, ATPase secretion protein | secA | template | 788288 | 791008 |  | Similar to Q87SF7 SecA protein from Vibrio parahaemolyticus (908 aa). FASTA: opt: 3541 Z-score: 3857.5 E(): 5.7e-207 Smith-Waterman score: 3541; 58.416 identity in 909 aa overlap.
SNP237005 | 794637 | 1366254 | G | A | L | F | aliphatic, hydrophobic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0775c | major facilitator superfamily (MFS) transport protein, pseudogene | bcr2 | complement | 794437 | 795339 |  | Similar to Q81IY9 Bicyclomycin resistance protein from Bacillus cereus (strain ATCC 14579 / DSM 31) (416 aa). FASTA: opt: 598 Z-score: 663.2 E(): 4.7e-29 Smith-Waterman score: 598; 28.960 identity in 404 aa overlap. Contains a frameshift after aa 103 Putative drug transport protein.
SNP57932 | 806842 | 577865 | C | T | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | [NAME] | arabinose phosphate isomerase | [NAME] | complement | 805895 | 806878 | 5.3.1.13 | Similar to Q8KLW6 Hypothetical protein from Pseudomonas stutzeri (Pseudomonas perfectomarina) (324 aa). FASTA: opt: 1095 Z-score: 1307.1 E(): 6.5e-65 Smith-Waterman score: 1095; 54.489 identity in 323 aa overlap. [NAME] are involved in sialic acid capsule biosynthesis in some pathogenic strains of Escherichia coli.
SNP220877 | 808697 | 579720 | C | T | A | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0790 | bacterial sugar transferase family protein | N\A | template | 807652 | 809046 |  | Similar to Q9FDJ5 Putative glycosyltransferase from Lactobacillus rhamnosus (466 aa). FASTA: opt: 733 Z-score: 876.0 E(): 6.7e-41 Smith-Waterman score: 733; 33.333 identity in 399 aa overlap. ORF ftt0790
SNP176550 | 808961 | 579984 | A | G | Q | R | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0790 | bacterial sugar transferase family protein | N\A | template | 807652 | 809046 |  | Similar to Q9FDJ5 Putative glycosyltransferase from Lactobacillus rhamnosus (466 aa). FASTA: opt: 733 Z-score: 876.0 E(): 6.7e-41 Smith-Waterman score: 733; 33.333 identity in 399 aa overlap. ORF ftt0790
SNP10005 | 809258 | 580281 | T | C | Y | H | aromatic, hydrophobic, polar | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0791 | UDP-glucose 4-epimerase | galE | template | 809039 | 810058 | 5.1.3.2
SNP360819 | 813386 | 584409 | A | C | K | Q | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0794 | hypothetical protein | N\A | template | 812984 | 814270 |  | Similar to AAP76675 Phosphoserine phosphatase (EC 3.1.3.3) from Helicobacter hepaticus (199 aa). FASTA: opt: 751 Z-score: 908.2 E(): 1.1e-42 Smith-Waterman score: 751; 55.385 identity in 195 aa overlap (18-212:4-198) AND to AAP76674 Hypothetical protein from Helicobacter hepaticus (213 aa). FASTA: opt: 823 Z-score: 994.3 E(): 1.7e-47 Smith-Waterman score: 823; 57.212 identity in 208 aa overlap (221-428:6-213). Seems to be two genes in some organisms. ORF ftt0794
SNP30840 | 813431 | 584454 | A | G | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0794 | hypothetical protein | N\A | template | 812984 | 814270 |  | Similar to AAP76675 Phosphoserine phosphatase (EC 3.1.3.3) from Helicobacter hepaticus (199 aa). FASTA: opt: 751 Z-score: 908.2 E(): 1.1e-42 Smith-Waterman score: 751; 55.385 identity in 195 aa overlap (18-212:4-198) AND to AAP76674 Hypothetical protein from Helicobacter hepaticus (213 aa). FASTA: opt: 823 Z-score: 994.3 E(): 1.7e-47 Smith-Waterman score: 823; 57.212 identity in 208 aa overlap (221-428:6-213). Seems to be two genes in some organisms. ORF ftt0794
SNP326004 | 813554 | 584577 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0794 | hypothetical protein | N\A | template | 812984 | 814270 |  | Similar to AAP76675 Phosphoserine phosphatase (EC 3.1.3.3) from Helicobacter hepaticus (199 aa). FASTA: opt: 751 Z-score: 908.2 E(): 1.1e-42 Smith-Waterman score: 751; 55.385 identity in 195 aa overlap (18-212:4-198) AND to AAP76674 Hypothetical protein from Helicobacter hepaticus (213 aa). FASTA: opt: 823 Z-score: 994.3 E(): 1.7e-47 Smith-Waterman score: 823; 57.212 identity in 208 aa overlap (221-428:6-213). Seems to be two genes in some organisms. ORF ftt0794
SNP43723 | 816780 | 587803 | G | T | A | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0798 | glycosyl transferase family protein | N\A | template | 816642 | 817649 | 2.4.1.- | Similar to O85000 [NAME] transferase from Streptococcus pneumoniae (323 aa). FASTA: opt: 499 Z-score: 609.1 E(): 4.9e-26 Smith-Waterman score: 499; 34.454 identity in 238 aa overlap. Same homolog as for next upstream ORF. ORF ftt0798
SNP9584 | 817393 | 588416 | T | A | L | H | aliphatic, hydrophobic, neutral | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0798 | glycosyl transferase family protein | N\A | template | 816642 | 817649 | 2.4.1.- | Similar to O85000 [NAME] transferase from Streptococcus pneumoniae (323 aa). FASTA: opt: 499 Z-score: 609.1 E(): 4.9e-26 Smith-Waterman score: 499; 34.454 identity in 238 aa overlap. Same homolog as for next upstream ORF. ORF ftt0798
SNP70214 | 825517 | 596540 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT0805 | capsule biosynthesis protein capB | capB | template | 824838 | 826055 |  | Similar to CAD71904 Capsule biosynthesis protein CapB from [NAME] (441 aa). FASTA: opt: 1155 Z-score: 1414.5 E(): 6.8e-71 Smith-Waterman score: 1156; 46.763 identity (50.914 ungapped) in 417 aa overlap.
SNP198401 | 825549 | 596572 | C | A | L | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0805 | capsule biosynthesis protein capB | capB | template | 824838 | 826055 |  | Similar to CAD71904 Capsule biosynthesis protein CapB from [NAME] (441 aa). FASTA: opt: 1155 Z-score: 1414.5 E(): 6.8e-71 Smith-Waterman score: 1156; 46.763 identity (50.914 ungapped) in 417 aa overlap.
SNP167077 | 848115 | 1273129 | C | T | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0831c | OmpA family protein | N\A | complement | 847951 | 849204 |  | Weakly similar to Q8A8H3 Outer membrane protein,OmpA family from Bacteroides thetaiotaomicron (266 aa). FASTA: opt: 184 Z-score: 220.7 E(): 0.00021 Smith-Waterman score: 184; 29.299 identity in 157 aa overlap. ORF ftt0831c
SNP167793 | 849165 | 1272079 | T | G | I | L | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0831c | OmpA family protein | N\A | complement | 847951 | 849204 |  | Weakly similar to Q8A8H3 Outer membrane protein,OmpA family from Bacteroides thetaiotaomicron (266 aa). FASTA: opt: 184 Z-score: 220.7 E(): 0.00021 Smith-Waterman score: 184; 29.299 identity in 157 aa overlap. ORF ftt0831c
SNP43091 | 899496 | 1221912 | C | T | T | M | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0891 | conserved hypothetical membrane protein | N\A | template | 899390 | 900109 |  | Similar to Q98NS1 Hypothetical protein mlr0012 from Rhizobium loti (244 aa). FASTA: opt: 327 Z-score: 404.4 bits: 82.2 E(): 1.2e-14 Smith-Waterman score: 327; 32.308 identity in 195 aa overlap. ORF ftt0891
SNP12551 | 938703 | 799547 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT0927 | Glutamate-1-semialdehyde-2,1-aminomutase | hemL | template | 938085 | 939380 | 5.4.3.8 | Similar to AAO91373 Glutamate-1-semialdehyde-2,1-aminomutase from Coxiella burnetii (435 aa). FASTA: opt: 1711 Z-score: 1960.9 E(): 2.2e-101 Smith-Waterman score: 1711; 60.520identity in 423 aa overlap.
SNP23775 | 939056 | 799900 | C | A | F | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0927 | Glutamate-1-semialdehyde-2,1-aminomutase | hemL | template | 938085 | 939380 | 5.4.3.8 | Similar to AAO91373 Glutamate-1-semialdehyde-2,1-aminomutase from Coxiella burnetii (435 aa). FASTA: opt: 1711 Z-score: 1960.9 E(): 2.2e-101 Smith-Waterman score: 1711; 60.520identity in 423 aa overlap.
[NAME] | 939349 | 800193 | A | G | Y | C | aromatic, hydrophobic, polar | polar, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0927 | Glutamate-1-semialdehyde-2,1-aminomutase | hemL | template | 938085 | 939380 | 5.4.3.8 | Similar to AAO91373 Glutamate-1-semialdehyde-2,1-aminomutase from Coxiella burnetii (435 aa). FASTA: opt: 1711 Z-score: 1960.9 E(): 2.2e-101 Smith-Waterman score: 1711; 60.520identity in 423 aa overlap.
SNP353304 | 975592 | 836431 | T | C | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT0964c | signal recognition particle protein, Ffh | ffh | complement | 975475 | 976851 |  | Similar to [NAME] from Pasteurella multocida (458 aa). FASTA: opt: 1851 Z-score: 1789.9 E(): 7.5e-92 Smith-Waterman score: 1851; 61.790 identity in 458 aa overlap
SNP272400 | 976371 | 837210 | T | C | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT0964c | signal recognition particle protein, Ffh | ffh | complement | 975475 | 976851 |  | Similar to [NAME] from Pasteurella multocida (458 aa). FASTA: opt: 1851 Z-score: 1789.9 E(): 7.5e-92 Smith-Waterman score: 1851; 61.790 identity in 458 aa overlap
SNP190116 | 976465 | 837304 | A | C | N | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT0964c | signal recognition particle protein, Ffh | ffh | complement | 975475 | 976851 |  | Similar to [NAME] from Pasteurella multocida (458 aa). FASTA: opt: 1851 Z-score: 1789.9 E(): 7.5e-92 Smith-Waterman score: 1851; 61.790 identity in 458 aa overlap
SNP82291 | 1012635 | 874239 | T | G | I | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1001 | Regulatory protein | N\A | template | 1012247 | 1012678 |  | Similar to Q8ZJ15 Putative regulatory protein from Yersinia pestis (169 aa). FASTA: opt: 313 Z-score: 406.8 E(): 9.2e-15 Smith-Waterman score: 313; 36.429 identity in 140 aa overlap. ORF ftt1001
SNP37625 | 1016262 | 877866 | G | A | T | I | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1004c | conserved hypothetical membrane protein | N\A | complement | 1016213 | 1017106 |  | Similar to Q9RX03 Hypothetical protein DR0512 from Deinococcus radiodurans (301 aa). Similar to opt: 577 Z-score: 644.6 E(): 5.1e-28 Smith-Waterman score: 577; 33.094 identity in 278 aa overlap. ORF ftt1004c
SNP259383 | 1016441 | 878045 | C | T | M | I | hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1004c | conserved hypothetical membrane protein | N\A | complement | 1016213 | 1017106 |  | Similar to Q9RX03 Hypothetical protein DR0512 from Deinococcus radiodurans (301 aa). Similar to opt: 577 Z-score: 644.6 E(): 5.1e-28 Smith-Waterman score: 577; 33.094 identity in 278 aa overlap. ORF ftt1004c
SNP58729 | 1016478 | 878082 | A | G | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1004c | conserved hypothetical membrane protein | N\A | complement | 1016213 | 1017106 |  | Similar to Q9RX03 Hypothetical protein DR0512 from Deinococcus radiodurans (301 aa). Similar to opt: 577 Z-score: 644.6 E(): 5.1e-28 Smith-Waterman score: 577; 33.094 identity in 278 aa overlap. ORF ftt1004c
SNP260265 | 1051762 | 913370 | C | T | S | L | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1039 | D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein | dacB | template | 1050993 | 1052396 | 3.4.16.4 | Similar to Q83FD1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase from Coxiella burnetii (477 aa). FASTA: opt: 654 Z-score: 780.3 E(): 1.4e-35 Smith-Waterman score: 654; 29.436 identity in 479 aa overlap.
[NAME] | 1052319 | 913927 | A | G | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1039 | D-alanyl-D-alanine carboxypeptidase (Penicillin binding protein) family protein | dacB | template | 1050993 | 1052396 | 3.4.16.4 | Similar to Q83FD1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase from Coxiella burnetii (477 aa). FASTA: opt: 654 Z-score: 780.3 E(): 1.4e-35 Smith-Waterman score: 654; 29.436 identity in 479 aa overlap.
SNP281132 | 1054747 | 916354 | T | G | N | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT1043 | FKBP-type peptidyl-prolyl cis-trans isomerase family protein | N\A | template | 1054250 | 1055062 | 5.2.1.8 | Similar to O32766 Macrophage infectivity potentiator from Legionella hackeliae (249 aa). FASTA: opt: 235 Z-score: 273.3 E(): 2.5e-07 Smith-Waterman score: 343; 27.599 identity in 279 aa overlap. ORF ftt1043
SNP77031 | 1067293 | 928899 | T | C | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1058c | Radical SAM superfamily protein | N\A | complement | 1066984 | 1068096 |  | Similar to Y2A6_PSEAE (Q51385) Hypothetical protein PA3806 from Pseudomonas aeruginosa (379 aa). FASTA: opt: 1458 Z-score: 1752.5 E(): 1e-89 Smith-Waterman score: 1458; 60.434 identity in 369 aa overlap. ORF ftt1058c
SNP187134 | 1067801 | 929407 | G | T | A | E | aliphatic, hydrophobic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1058c | Radical SAM superfamily protein | N\A | complement | 1066984 | 1068096 |  | Similar to Y2A6_PSEAE (Q51385) Hypothetical protein PA3806 from Pseudomonas aeruginosa (379 aa). FASTA: opt: 1458 Z-score: 1752.5 E(): 1e-89 Smith-Waterman score: 1458; 60.434 identity in 369 aa overlap. ORF ftt1058c
SNP262145 | 1087319 | 1295110 | G | A | W | * | aromatic, hydrophobic, neutral |  | Stop | Petrosino [12] | FTT1075 | transcriptional regulator | N\A | template | 1087105 | 1087332 |  | Similar to Y4MF_RHISN (P55565) Hypothetical transcriptional regulator y4mF from Rhizobium sp. (strain NGR234) (76 aa). FASTA: opt: 205 Z-score: 292.4 E(): 2.1e-08 Smith-Waterman score: 205; 47.059identity in 68 aa overlap. ORF ftt1075
SNP262145 | 1087319 | 1295110 | G | A | W | * | aromatic, hydrophobic, neutral |  | Stop | Petrosino [12] | FTT1076 | transcription regulator | hipA | template | 1087317 | 1088591 |  | Similar to Q82V03 Possible HipA protein from Nitrosomonas europaea (429 aa). FASTA: opt: 1021 Z-score: 1249.8 E(): 1e-61 Smith-Waterman score: 1021; 41.162 identity in 413 aa overlap.
SNP26053 | 1091209 | 1298983 | A | G | F | S | aromatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1081c | hypothetical protein | N\A | complement | 1091064 | 1091867 |  | ORF ftt1081c
SNP200733 | 1093554 | 1301328 | G | A | P | S | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1084c | recombination associated protein | rdgC | complement | 1092793 | 1093653 |  | Similar to RDGC_YERPE (Q8ZC18) Recombination associated protein rdgC from Yersinia pestis (303 aa). FASTA: opt: 448 Z-score: 546.2 E(): 1.6e-22 Smith-Waterman score: 448; 28.231 identity in 294 aa overlap.
[NAME] | 1105316 | 1313090 | G | A | T | M | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1095c | hypothetical protein | N\A | complement | 1104028 | 1105410 |  | Similar to Q88DA4 Outer membrane efflux protein from Pseudomonas putida (strain KT2440) (477 aa). FASTA: opt: 405 Z-score: 484.1 E(): 4.5e-19 Smith-Waterman score: 405; 22.907 identity in 454 aa overlap. Not a membrane protein. ORF ftt1095c
SNP21623 | 1111880 | 1319655 | A | G | D | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT1101 | 4Fe-4S ferredoxin (electron transport) family protein, pseudogene | yjeS | template | 1111837 | 1112007 |  | Similar to YJES_ECOLI (P39288) Putative electron transport protein from Escherichia coli (379 aa). FASTA: opt: 611 Z-score: 746.8 E(): 1e-33 Smith-Waterman score: 999; 45.938 identity in 357 aa overlap. Contains 2 frameshifts after aa 119 and 176. Both frameshifts occur at heptanucleotide sequences and so could be part of a programmed translational frameshifts
SNP363439 | 1111949 | 1319724 | A | G | E | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT1101 | 4Fe-4S ferredoxin (electron transport) family protein, pseudogene | yjeS | template | 1111837 | 1112007 |  | Similar to YJES_ECOLI (P39288) Putative electron transport protein from Escherichia coli (379 aa). FASTA: opt: 611 Z-score: 746.8 E(): 1e-33 Smith-Waterman score: 999; 45.938 identity in 357 aa overlap. Contains 2 frameshifts after aa 119 and 176. Both frameshifts occur at heptanucleotide sequences and so could be part of a programmed translational frameshifts
SNP180636 | 1112523 | 1320298 | T | G | * | E |  | polar, hydrophilic, charged(-) | UnStop | Petrosino [12] | FTT1101 | 4Fe-4S ferredoxin (electron transport) family protein, pseudogene | yjeS | template | 1112007 | 1112525 |  | Similar to YJES_ECOLI (P39288) Putative electron transport protein from Escherichia coli (379 aa). FASTA: opt: 611 Z-score: 746.8 E(): 1e-33 Smith-Waterman score: 999; 45.938 identity in 357 aa overlap. Contains 2 frameshifts after aa 119 and 176. Both frameshifts occur at heptanucleotide sequences and so could be part of a programmed translational frameshifts
SNP210354 | 1113058 | 1320835 | T | C | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1103 | conserved hypothetical lipoprotein | N\A | template | 1112964 | 1114061 |  | Similar to Q8Z9P6 Putative exported protein from Salmonella typhi (281 aa). FASTA: opt: 392 Z-score: 435.6 E(): 2.3e-16 Smith-Waterman score: 392; 33.491 identity in 212 aa overlap. ORF ftt1103
SNP202770 | 1113073 | 1320850 | G | A | S | N | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Petrosino [12] | FTT1103 | conserved hypothetical lipoprotein | N\A | template | 1112964 | 1114061 |  | Similar to Q8Z9P6 Putative exported protein from Salmonella typhi (281 aa). FASTA: opt: 392 Z-score: 435.6 E(): 2.3e-16 Smith-Waterman score: 392; 33.491 identity in 212 aa overlap. ORF ftt1103
SNP47407 | 1113151 | 1320928 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1103 | conserved hypothetical lipoprotein | N\A | template | 1112964 | 1114061 |  | Similar to Q8Z9P6 Putative exported protein from Salmonella typhi (281 aa). FASTA: opt: 392 Z-score: 435.6 E(): 2.3e-16 Smith-Waterman score: 392; 33.491 identity in 212 aa overlap. ORF ftt1103
SNP331549 | 1114438 | 1322231 | A | C | T | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1104 | major facilitator superfamily (MFS) transport protein, pseudogene | [NAME] | template | 1114348 | 1114602 |  | Similar to Q9CKS3 Bcr from Pasteurella multocida (399 aa). FASTA: opt: 568 Z-score: 616.5 E(): 1.9e-26 Smith-Waterman score: 568; 30.518 identity in 367 aa overlap. Contains a frameshift after aa 85 Putative drug transport protein.
SNP258831 | 1124777 | 1085716 | C | T | G | S | aliphatic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1115c | preprotein translocase, subunit D, membrane protein | [NAME] | complement | 1124736 | 1126673 |  | Similar to Q8ECM5 Protein-export membrane protein SecD from Shewanella oneidensis (616 aa). FASTA: opt: 1254 Z-score: 1367.1 E(): 3e-68 Smith-Waterman score: 1583; 40.683 identity in 644 aa overlap. Promotes in cooperation with SecF the release of the mature peptide into the periplasm.
SNP261293 | 1125641 | 1086580 | T | C | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1115c | preprotein translocase, subunit D, membrane protein | [NAME] | complement | 1124736 | 1126673 |  | Similar to Q8ECM5 Protein-export membrane protein SecD from Shewanella oneidensis (616 aa). FASTA: opt: 1254 Z-score: 1367.1 E(): 3e-68 Smith-Waterman score: 1583; 40.683 identity in 644 aa overlap. Promotes in cooperation with SecF the release of the mature peptide into the periplasm.
SNP210706 | 1125743 | 1086682 | G | T | P | T | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1115c | preprotein translocase, subunit D, membrane protein | [NAME] | complement | 1124736 | 1126673 |  | Similar to Q8ECM5 Protein-export membrane protein SecD from Shewanella oneidensis (616 aa). FASTA: opt: 1254 Z-score: 1367.1 E(): 3e-68 Smith-Waterman score: 1583; 40.683 identity in 644 aa overlap. Promotes in cooperation with SecF the release of the mature peptide into the periplasm.
SNP288793 | 1126201 | 1087140 | G | T | S | Y | polar, hydrophilic, neutral | aromatic, hydrophobic, polar | Non-Conservative | Petrosino [12] | FTT1115c | preprotein translocase, subunit D, membrane protein | [NAME] | complement | 1124736 | 1126673 |  | Similar to Q8ECM5 Protein-export membrane protein SecD from Shewanella oneidensis (616 aa). FASTA: opt: 1254 Z-score: 1367.1 E(): 3e-68 Smith-Waterman score: 1583; 40.683 identity in 644 aa overlap. Promotes in cooperation with SecF the release of the mature peptide into the periplasm.
SNP6168 | 1150248 | 1111197 | T | A | C | S | polar, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | [NAME] | Ferrochelatase | hemH | template | 1150233 | 1151234 | 4.99.1.1 | Similar to HEMZ_RHIME (Q92M52) Ferrochelatase (EC 4.99.1.1) from Rhizobium meliloti (Sinorhizobium meliloti) (339 aa). FASTA: opt: 1069 Z-score: 1243.4 E(): 2.3e-61 Smith-Waterman score: 1069; 48.160 identity in 326 aa overlap.
SNP154814 | 1151025 | 1111974 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | [NAME] | Ferrochelatase | hemH | template | 1150233 | 1151234 | 4.99.1.1 | Similar to HEMZ_RHIME (Q92M52) Ferrochelatase (EC 4.99.1.1) from Rhizobium meliloti (Sinorhizobium meliloti) (339 aa). FASTA: opt: 1069 Z-score: 1243.4 E(): 2.3e-61 Smith-Waterman score: 1069; 48.160 identity in 326 aa overlap.
SNP218164 | 1195849 | 1156786 | T | G | N | K | polar, hydrophilic, neutral | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT1179 | GTP binding translational elongation factor [NAME] and G family protein | bipA | template | 1194341 | 1196158 |  | Similar to Q9KNJ4 GTP-binding protein TypA from Vibrio cholerae (609 aa). FASTA: opt: 2972 Z-score: 3319.9 E(): 5e-177 Smith-Waterman score: 2972; 73.045identity in 601 aa overlap.
SNP187528 | 1195928 | 1156865 | A | G | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1179 | GTP binding translational elongation factor [NAME] and G family protein | bipA | template | 1194341 | 1196158 |  | Similar to Q9KNJ4 GTP-binding protein TypA from Vibrio cholerae (609 aa). FASTA: opt: 2972 Z-score: 3319.9 E(): 5e-177 Smith-Waterman score: 2972; 73.045identity in 601 aa overlap.
SNP73062 | 1196126 | 1157063 | A | G | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1179 | GTP binding translational elongation factor [NAME] and G family protein | bipA | template | 1194341 | 1196158 |  | Similar to Q9KNJ4 GTP-binding protein TypA from Vibrio cholerae (609 aa). FASTA: opt: 2972 Z-score: 3319.9 E(): 5e-177 Smith-Waterman score: 2972; 73.045identity in 601 aa overlap.
[NAME] | 1199562 | 1160497 | C | T | S | N | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Petrosino [12] | FTT1182c | VacJ lipoprotein, pseudogene | vacJ | complement | 1199393 | 1199881 |  | Similar to Q9Z674 [NAME] from Zymomonas mobilis (256 aa). FASTA: opt: 348 Z-score: 428.0 E(): [NAME] score: 348; 33.333 identity in 234 aa overlap. Contains an in-frame stop codon
SNP163396 | 1247085 | 698114 | T | C | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | [NAME] | [NAME] transferase | lgt | template | 1246307 | 1247113 | 2.4.99.- | Similar to [NAME] diacylglyceryl transferase from Pseudomonas aeruginosa (266 aa). FASTA: opt: 1070 Z-score: 1270.0 E(): 7.6e-63 Smith-Waterman score: 1070; 56.757 identity in 259 aa overlap.
SNP225566 | 1247102 | 698097 | A | G | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | [NAME] | [NAME] transferase | lgt | template | 1246307 | 1247113 | 2.4.99.- | Similar to [NAME] diacylglyceryl transferase from Pseudomonas aeruginosa (266 aa). FASTA: opt: 1070 Z-score: 1270.0 E(): 7.6e-63 Smith-Waterman score: 1070; 56.757 identity in 259 aa overlap.
SNP229135 | 1254756 | 690636 | G | A | P | S | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1235c | glycosyl transferases group 1 family protein | [NAME] | complement | 1254094 | 1255158 | 2.-.-.- | Similar to Q8FZH8 Lipopolysaccharide core biosynthesis mannosyltransferase LpcC from Brucella suis (354 aa). FASTA: opt: 825 Z-score: 1005.6 E(): 4e-48 Smith-Waterman score: 825; 38.352 identity in 352 aa overlap.
SNP332581 | 1270637 | 674756 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1249 | mycobacterial cell entry (mce) related family protein | N\A | template | 1270088 | 1270813 |  | Similar to Q9HZ27 Hypothetical protein PA3213 from Pseudomonas aeruginosa (312 aa). FASTA: opt: 282 Z-score: 315.9 E(): 1.1e-09 Smith-Waterman score: 282; 23.661 identity in 224 aa overlap. The archetype (Rv0169) for mce related family proteins, was isolated as being necessary for colonization of, and survival within, the macrophage MEDLINE:93377076. ORF ftt1249
SNP23753 | 1279744 | 665649 | A | G | E | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT1257 | HlyD family secretion protein | emrA1 | template | 1279038 | 1280060 |  | Similar to Q83DE0 [NAME] resistance protein from Coxiella burnetii (331 aa). FASTA: opt: 742 Z-score: 834.3 E(): 1.4e-38 Smith-Waterman score: 742; 37.695 identity in 321 aa overlap.
SNP94943 | 1288854 | 569185 | G | A | E | K | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT1267 | LysR transcriptional regulator family protein | N\A | template | 1288617 | 1289513 |  | Similar to Q8E7Z8 Transcriptional regulator, [NAME] family from Shewanella oneidensis (289 aa). FASTA: opt: 561 Z-score: 683.5 E(): 3.5e-30 Smith-Waterman score: 561; 32.423identity in 293 aa overlap. ORF ftt1267
SNP191021 | 1289094 | 568945 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1267 | LysR transcriptional regulator family protein | N\A | template | 1288617 | 1289513 |  | Similar to Q8E7Z8 Transcriptional regulator, [NAME] family from Shewanella oneidensis (289 aa). FASTA: opt: 561 Z-score: 683.5 E(): 3.5e-30 Smith-Waterman score: 561; 32.423identity in 293 aa overlap. ORF ftt1267
SNP166031 | 1289499 | 568540 | A | C | K | Q | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1267 | LysR transcriptional regulator family protein | N\A | template | 1288617 | 1289513 |  | Similar to Q8E7Z8 Transcriptional regulator, [NAME] family from Shewanella oneidensis (289 aa). FASTA: opt: 561 Z-score: 683.5 E(): 3.5e-30 Smith-Waterman score: 561; 32.423identity in 293 aa overlap. ORF ftt1267
SNP139190 | 1289832 | 568207 | G | T | L | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1268c | Chaperone protein dnaJ (heat shock protein 70 family cofactor) | dnaJ | complement | 1289527 | 1290651 |  | Similar to DNAJ_FRATU (P48207) Chaperone protein dnaJ from Francisella tularensis ssp. [NAME] strain LVS (371 aa). FASTA: opt: 2489 Z-score: 2932.9 E(): 1.8e-155 Smith-Waterman score: 2489; 98.663 identity in 374 aa overlap.
SNP136906 | 1290907 | 567141 | A | C | S | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1269c | Chaperone protein dnaK (heat shock protein family 70 protein) | dnaK | complement | 1290740 | 1292668 |  | Similar to DNAK_FRATU (P48205) Chaperone protein dnaK (Heat shock protein 70) from Francisella tularensis ssp. [NAME] strain LVS (642 aa). FASTA: opt: 4023 Z-score: 4265.8 E(): 0 Smith-Waterman score: 4023; 99.221 identity in 642 aa overlap.
SNP153336 | 1291516 | 566532 | C | A | A | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1269c | Chaperone protein dnaK (heat shock protein family 70 protein) | dnaK | complement | 1290740 | 1292668 |  | Similar to DNAK_FRATU (P48205) Chaperone protein dnaK (Heat shock protein 70) from Francisella tularensis ssp. [NAME] strain LVS (642 aa). FASTA: opt: 4023 Z-score: 4265.8 E(): 0 Smith-Waterman score: 4023; 99.221 identity in 642 aa overlap.
SNP183813 | 1335468 | 1378607 | A | G | H | R | aromatic, polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | [NAME] | major facilitator superfamily (MFS) transport protein | yieO | template | 1335104 | 1336510 |  | Similar to Q8UHQ9 MFS permease from Agrobacterium tumefaciens (strain C58 / ATCC 33970) (475 aa). FASTA: opt: 757 Z-score: 760.1 E(): 1.9e-34 Smith-Waterman score: 766; 32.735 identity in 446 aa overlap.
SNP280340 | 1335771 | 1378910 | G | A | R | H | polar, hydrophilic, charged(+) | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | [NAME] | major facilitator superfamily (MFS) transport protein | yieO | template | 1335104 | 1336510 |  | Similar to Q8UHQ9 MFS permease from Agrobacterium tumefaciens (strain C58 / ATCC 33970) (475 aa). FASTA: opt: 757 Z-score: 760.1 E(): 1.9e-34 Smith-Waterman score: 766; 32.735 identity in 446 aa overlap.
SNP296787 | 1335846 | 1378985 | A | G | H | R | aromatic, polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | [NAME] | major facilitator superfamily (MFS) transport protein | yieO | template | 1335104 | 1336510 |  | Similar to Q8UHQ9 MFS permease from Agrobacterium tumefaciens (strain C58 / ATCC 33970) (475 aa). FASTA: opt: 757 Z-score: 760.1 E(): 1.9e-34 Smith-Waterman score: 766; 32.735 identity in 446 aa overlap.
SNP232951 | 1348311 | 1391450 | T | G | D | E | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(-) | Conservative | Petrosino [12] | FTT1321 | Peptidase M16 family protein | N\A | template | 1348123 | 1349376 | 3.4.-.- | Similar to Q83AI4 Peptidase, [NAME] family from Coxiella burnetii (459 aa). FASTA: opt: 868 Z-score: 1053.1 E(): [NAME] score: 868; 34.158 identity in 404 aa overlap. ORF ftt1321
SNP357616 | 1349452 | 1392591 | A | G | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1322 | Peptidase M16 family protein | N\A | template | 1349383 | 1350606 | 3.4.-.- | Similar to Q83AI5 Peptidase, [NAME] family from Coxiella burnetii (443 aa). FASTA: opt: 605 Z-score: 727.1 E(): 1.3e-32 Smith-Waterman score: 605; 28.607 identity in 402 aa overlap. ORF ftt1322
SNP79504 | 1349525 | 1392664 | A | G | D | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT1322 | Peptidase M16 family protein | N\A | template | 1349383 | 1350606 | 3.4.-.- | Similar to Q83AI5 Peptidase, [NAME] family from Coxiella burnetii (443 aa). FASTA: opt: 605 Z-score: 727.1 E(): 1.3e-32 Smith-Waterman score: 605; 28.607 identity in 402 aa overlap. ORF ftt1322
SNP171361 | 1350440 | 1393579 | T | C | F | S | aromatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1322 | Peptidase M16 family protein | N\A | template | 1349383 | 1350606 | 3.4.-.- | Similar to Q83AI5 Peptidase, [NAME] family from Coxiella burnetii (443 aa). FASTA: opt: 605 Z-score: 727.1 E(): 1.3e-32 Smith-Waterman score: 605; 28.607 identity in 402 aa overlap. ORF ftt1322
SNP114728 | 1361977 | 1405115 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1332 | polysaccharide biosynthesis protein (export protein) | N\A | template | 1361242 | 1362501 |  | Similar to Q9X4C7 Repeat unit exporter from Escherichia coli (419 aa). FASTA: opt: 324 Z-score: 369.2 E(): 1.1e-12 Smith-Waterman score: 324; 22.604 identity in 407 aa overlap. ORF ftt1332
SNP175720 | 1406799 | 518365 | A | C | Y | S | aromatic, hydrophobic, polar | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1362 | major facilitator superfamily (MFS) transport protein, pseudogene | N\A | template | 1406603 | 1407331 |  | Similar to AAO90848 (Q83BZ2) Major facilitator family transporter from Coxiella burnetii (429 aa). FASTA: opt: 816 Z-score: 918.3 E(): 2.7e-43 Smith-Waterman score: 1063; 41.966 identity in 417 aa overlap. CDS contains a frameshift after aa 49 and is also interrupted by an IS element Identical to FTT1717 upto aa 307. It is part of the duplicated region 1374371..1408281 (again upto aa 307) which is identical to 1767715..1801625 ORF ftt1362
SNP306776 | 1408394 | 516786 | A | C | Q | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1362 | major facilitator superfamily (MFS) transport protein, pseudogene | N\A | template | 1408282 | 1408617 |  | Similar to AAO90848 (Q83BZ2) Major facilitator family transporter from Coxiella burnetii (429 aa). FASTA: opt: 816 Z-score: 918.3 E(): 2.7e-43 Smith-Waterman score: 1063; 41.966 identity in 417 aa overlap. CDS contains a frameshift after aa 49 and is also interrupted by an IS element Identical to FTT1717 upto aa 307. It is part of the duplicated region 1374371..1408281 (again upto aa 307) which is identical to 1767715..1801625 ORF ftt1362
SNP282935 | 1486894 | 436849 | G | A | S | L | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | [NAME] | major facilitator superfamily (MFS) transport protein, pseudogene | N\A | complement | 1486125 | 1487384 |  | Similar to Q8XAW5 Putative transport protein from E.coli (475 aa). FASTA: opt: 517 Z-score: 580.9 E(): 1.7e-24 Smith-Waterman score: 517; 27.007 identity in 411 aa overlap . Contains a frameshift after aa 45 ORF [NAME]
SNP144871 | 1487310 | 437265 | T | C | I | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | [NAME] | major facilitator superfamily (MFS) transport protein, pseudogene | N\A | complement | 1486125 | 1487384 |  | Similar to Q8XAW5 Putative transport protein from E.coli (475 aa). FASTA: opt: 517 Z-score: 580.9 E(): 1.7e-24 Smith-Waterman score: 517; 27.007 identity in 411 aa overlap . Contains a frameshift after aa 45 ORF [NAME]
SNP5397 | 1492629 | 442585 | G | A | D | N | polar, hydrophilic, charged(-) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1445 | Thioredoxin | trxA1 | template | 1492446 | 1492769 |  | Similar to Q9JYY9 Thioredoxin from Neisseria meningitidis (110 aa). FASTA: opt: 452 Z-score: 595.9 E(): 2.4e-25 Smith-Waterman score: 452; 62.000 identity in 100 aa overlap
SNP187834 | 1499550 | 425108 | A | C | S | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1450c | dTDP-D-glucose 4,6-dehydratase | wbtM | complement | 1499074 | 1500120 | 4.2.1.46 | Similar to Q9RDY1 RmlB protein from Legionella pneumophila (351 aa). FASTA: opt: 1490 Z-score: 1729.8 E(): 1.7e-88 Smith-Waterman score: 1490; 64.392 identity in 337 aa overlap
SNP223360 | 1499853 | 424805 | G | T | L | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1450c | dTDP-D-glucose 4,6-dehydratase | wbtM | complement | 1499074 | 1500120 | 4.2.1.46 | Similar to Q9RDY1 RmlB protein from Legionella pneumophila (351 aa). FASTA: opt: 1490 Z-score: 1729.8 E(): 1.7e-88 Smith-Waterman score: 1490; 64.392 identity in 337 aa overlap
SNP339664 | 1500645 | 424012 | C | T | G | S | aliphatic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1451c | Glucose-1-phosphate thymidylyltransferase | wbtL | complement | 1500637 | 1501521 | 2.7.7.24 | Similar to O66250 Glucose-1-phosphate-thymidylyltransferase from Actinobacillus actinomycetemcomitans (290 aa). FASTA: opt: 1336 Z-score: 1567.4 E(): 1.9e-79 Smith-Waterman score: 1336; 67.466 identity in 292 aa overlap
SNP247527 | 1503079 | 421578 | T | C | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT1453c | O-antigen flippase | wzx | complement | 1502399 | 1503886 |  | Similar to AAO39697(Q84DG4) O antigen flippase from E. coli (464 aa). FASTA: opt: 861 Z-score: 954.5 E(): 2.6e-45 Smith-Waterman score: 861; 31.343identity in 469 aa overlap
[NAME] | 1508569 | 416088 | T | C | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1457c | glycosyl transferase | wbtG | complement | 1507574 | 1508674 | 2.4.1.- | Similar to [NAME] transferase group 1 family protein from Shewanella oneidensis (373 aa). FASTA: opt: 531 Z-score: 625.5 E(): 5.5e-27 Smith-Waterman score: 531; 32.353 identity in 374 aa overlap
SNP17185 | 1508831 | 415826 | A | G | F | S | aromatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1458c | Membrane protein/O-antigen protein | wzy | complement | 1508671 | 1509900 |  | membrane protein/O-antigen polymerase (personal communication from authors)
SNP362119 | 1510558 | 414099 | C | T | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1459c | NAD dependent epimerase | wbtF | complement | 1509917 | 1510888 | 5.1.3.2 | Similar to Q8KN66 WbpP from Pseudomonas aeruginosa (341 aa). FASTA: opt: 1033 Z-score: 1225.7 E(): 2e-60 Smith-Waterman score: 1033; 51.562identity in 320 aa overlap
SNP165761 | 1511313 | 413344 | T | C | S | G | polar, hydrophilic, neutral | aliphatic, neutral | Non-Conservative | Petrosino [12] | FTT1460c | UDP-glucose/GDP-mannose dehydrogenase | wbtE | complement | 1510888 | 1512198 | 1.1.1.- | Similar to Q8EMC3 Vi polysaccharide biosynthesis from Oceanobacillus iheyensis (437 aa). FASTA: opt: 1817 Z-score: 2048.6 E(): 2.9e-106 Smith-Waterman score: 1817; 59.268 identity in 437 aa overlap
SNP338941 | 1515135 | 409522 | T | A | K | N | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1464c | dTDP-glucose 4,6-dehydratase | wbtA | complement | 1514715 | 1516451 | 4.2.1.46 | Similar to Q9S4V4 PglF from Campylobacter jejuni (590 aa). FASTA: opt: 1343 Z-score: 1435.9 E(): 3.9e-72 Smith-Waterman score: 1378; 43.543identity in 604 aa overlap
SNP31618 | 1528042 | 614744 | T | C | S | P | polar, hydrophilic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1475 | Galactose-1-phosphate uridylyltransferase | galT | template | 1527544 | 1528569 | 2.7.7.12 | Similar to [NAME] uridylyltransferase from Pasteurella multocida (348 aa). FASTA: opt: 1312 Z-score: 1558.0 E(): 6.2e-79 Smith-Waterman score: 1312; 56.231identity in 329 aa overlap
SNP280769 | 1528863 | 613923 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1476 | Galactokinase | galK | template | 1528572 | 1529720 | 2.7.1.6 | Similar to GAL1_ACTPL Galactokinase from Actinobacillus pleuropneumoniae (384 aa) FASTA: opt: 959 Z-score: 1098.0 E(): 2.6e-53 Smith-Waterman score: 959; 38.710identity in 372 aa overlap
SNP101291 | 1530217 | 612569 | T | C | K | R | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Conservative | Petrosino [12] | FTT1478c | 3-deoxy-D-manno-octulosonate cytidyltransferase | kdsB | complement | 1530105 | 1530857 | 2.7.7.38 | Similar to AAO90028 (Q83E52) 3-deoxy-D-manno-octulosonate cytidyltransferase from Coxiella burnetti (249 aa). FASTA: opt: 828 Z-score: 927.9 E(): 7.8e-44 Smith-Waterman score: 828; 52.033 identity in 246 aa overlap
SNP46917 | 1530604 | 612182 | C | G | S | T | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Petrosino [12] | FTT1478c | 3-deoxy-D-manno-octulosonate cytidyltransferase | kdsB | complement | 1530105 | 1530857 | 2.7.7.38 | Similar to AAO90028 (Q83E52) 3-deoxy-D-manno-octulosonate cytidyltransferase from Coxiella burnetti (249 aa). FASTA: opt: 828 Z-score: 927.9 E(): 7.8e-44 Smith-Waterman score: 828; 52.033 identity in 246 aa overlap
SNP349938 | 1530680 | 612106 | T | C | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1478c | 3-deoxy-D-manno-octulosonate cytidyltransferase | kdsB | complement | 1530105 | 1530857 | 2.7.7.38 | Similar to AAO90028 (Q83E52) 3-deoxy-D-manno-octulosonate cytidyltransferase from Coxiella burnetti (249 aa). FASTA: opt: 828 Z-score: 927.9 E(): 7.8e-44 Smith-Waterman score: 828; 52.033 identity in 246 aa overlap
SNP203266 | 1565845 | 757361 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1511 | conserved hypothetical membrane protein | N\A | template | 1565788 | 1566672 |  | Similar to AAO90839 Membrane protein, putative from Coxiella burnetii (305 aa). FASTA: opt: 693 Z-score: 824.9 E(): 4.3e-38 Smith-Waterman score: 693; 38.776 identity in 294 aa overlap. ORF ftt1511
[NAME] | 1566262 | 756944 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1511 | conserved hypothetical membrane protein | N\A | template | 1565788 | 1566672 |  | Similar to AAO90839 Membrane protein, putative from Coxiella burnetii (305 aa). FASTA: opt: 693 Z-score: 824.9 E(): 4.3e-38 Smith-Waterman score: 693; 38.776 identity in 294 aa overlap. ORF ftt1511
SNP186390 | 1614231 | 370131 | T | C | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1553c | Ribonuclease R | rnr | complement | 1614025 | 1616322 | 3.1.-.- | Similar to [NAME] R from (808 aa). FASTA: opt: 1840 Z-score: 1989.4 E(): 5.9e-103 Smith-Waterman score: 1863; 41.602 identity in 774 aa overlap
SNP137448 | 1615431 | 368931 | C | T | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1553c | Ribonuclease R | rnr | complement | 1614025 | 1616322 | 3.1.-.- | Similar to [NAME] R from (808 aa). FASTA: opt: 1840 Z-score: 1989.4 E(): 5.9e-103 Smith-Waterman score: 1863; 41.602 identity in 774 aa overlap
SNP48951 | 1615460 | 368902 | T | C | K | R | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Conservative | Petrosino [12] | FTT1553c | Ribonuclease R | rnr | complement | 1614025 | 1616322 | 3.1.-.- | Similar to [NAME] R from (808 aa). FASTA: opt: 1840 Z-score: 1989.4 E(): 5.9e-103 Smith-Waterman score: 1863; 41.602 identity in 774 aa overlap
SNP101393 | 1616040 | 368322 | T | C | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1553c | Ribonuclease R | rnr | complement | 1614025 | 1616322 | 3.1.-.- | Similar to [NAME] R from (808 aa). FASTA: opt: 1840 Z-score: 1989.4 E(): 5.9e-103 Smith-Waterman score: 1863; 41.602 identity in 774 aa overlap
SNP155954 | 1618084 | 366278 | C | T | R | K | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Conservative | Petrosino [12] | FTT1556c | signal peptidase I | lepB | complement | 1617909 | 1618772 | 3.4.21.89 | Similar to AAO90612 9 83CL5) Signal peptidase I from Coxiella burnetii (259 aa). FASTA: opt: 716 Z-score: 839.6 E(): 6.5e-39 Smith-Waterman score: 717; 39.416 identity in 274 aa overlap
SNP222965 | 1633004 | 351389 | T | A | Q | L | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1571c | UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase | lpxD | complement | 1632082 | 1633095 | 2.3.1.- | Similar to Q83DT0 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase from Coxiella burnetii (342 aa). FASTA: opt: 1026 Z-score: 1121.9 E(): 1.2e-54 Smith-Waterman score: 1024; 47.041 identity in 338 aa overlap paralog of FTT0286
SNP361410 | 1656478 | 313009 | T | C | N | S | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Petrosino [12] | FTT1592c | Chitinase, fragment | N\A | complement | 1655865 | 1657025 |  | Similar to Q9ZNL0 Chitinase A from Clostridium paraputrificum (832 aa). FASTA: opt: 196 Z-score: 216.1 E(): 0.00035 Smith-Waterman score: 203; 22.770identity in 426 aa overlap ORF ftt1592c
SNP330411 | 1681767 | 302656 | C | T | L | F | aliphatic, hydrophobic, neutral | aromatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | [NAME] | Adenine-specific methylase, HemK family | hemK | template | 1680888 | 1681832 | 2.1.1.- | Similar to Q87MM8 Putative adenine-specific methylase from Vibrio parahaemolyticus (310 aa). FASTA: opt: 1066 Z-score: 1250.0 E(): 8.9e-62 Smith-Waterman score: 1066; 47.368 identity in 304 aa overlap
SNP210406 | 1706832 | 277272 | C | T | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1641c | HsdR protein, fragment | hsdR2 | complement | 1706464 | 1707042 | 3.1.21.3 | Similar to Q8RN28 HsdR from Campylobacter jejuni (1031 aa). FASTA: 647 Z-score: 728.9 E(): 9.4e-33 Smith-Waterman score: 649; 57.222 identity in 180 aa overlap. No start codon due to truncation at N-terminal according to FASTA hits. FTT1641c also has a partial match to Q8RN31 (110-360 aa). Potential deletion between FTT1641c and FTT1642c
SNP349303 | 1752580 | 1813797 | T | C | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1683c | major facilitator superfamily (MFS) transport protein | N\A | complement | 1752569 | 1753720 |  | Similar to Q8NM37 Permeases of the major facilitator superfamily from Corynebacterium glutamicum (398 aa). FASTA: opt: 440 z-score: 489.8 E(): 2e-19 Smith-Waterman score: 440; 24.211 identity in 380 aa overlap ORF ftt1683c
[NAME] | 1752679 | 1813698 | T | C | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1683c | major facilitator superfamily (MFS) transport protein | N\A | complement | 1752569 | 1753720 |  | Similar to Q8NM37 Permeases of the major facilitator superfamily from Corynebacterium glutamicum (398 aa). FASTA: opt: 440 z-score: 489.8 E(): 2e-19 Smith-Waterman score: 440; 24.211 identity in 380 aa overlap ORF ftt1683c
SNP163893 | 1764441 | 272906 | A | G | T | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | [NAME] | Chaperone protein, groEL | [NAME] | template | 1764306 | 1765940 | 1.3.1.- | Similar to CH60_FRATU (P94798) 60 kDa chaperonin (protein Cpn60) from Francisella tularensis ssp. [NAME] strain LVS (544 aa). FASTA: opt: 3359 Z-score: 3417.9 E(): 1.6e-182 99.265 identity in 544 aa overlap
SNP315843 | 1765276 | 272071 | A | T | Q | L | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | [NAME] | Chaperone protein, groEL | [NAME] | template | 1764306 | 1765940 | 1.3.1.- | Similar to CH60_FRATU (P94798) 60 kDa chaperonin (protein Cpn60) from Francisella tularensis ssp. [NAME] strain LVS (544 aa). FASTA: opt: 3359 Z-score: 3417.9 E(): 1.6e-182 99.265 identity in 544 aa overlap
SNP217183 | 1765617 | 271730 | T | C | Y | H | aromatic, hydrophobic, polar | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | [NAME] | Chaperone protein, groEL | [NAME] | template | 1764306 | 1765940 | 1.3.1.- | Similar to CH60_FRATU (P94798) 60 kDa chaperonin (protein Cpn60) from Francisella tularensis ssp. [NAME] strain LVS (544 aa). FASTA: opt: 3359 Z-score: 3417.9 E(): 1.6e-182 99.265 identity in 544 aa overlap
SNP163604 | 1765937 | 271410 | G | A | M | I | hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | [NAME] | Chaperone protein, groEL | [NAME] | template | 1764306 | 1765940 | 1.3.1.- | Similar to CH60_FRATU (P94798) 60 kDa chaperonin (protein Cpn60) from Francisella tularensis ssp. [NAME] strain LVS (544 aa). FASTA: opt: 3359 Z-score: 3417.9 E(): 1.6e-182 99.265 identity in 544 aa overlap
SNP284509 | 1774810 | 53984 | G | A | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1699 | hypothetical protein | pdpA1 | template | 1773304 | 1775766 |  | Similar to AAP58968.1 (Q7X3I9) PdpA from Francisella novicida (820 aa). BLAST Score = 1545 bits (4000), Expect = 0.0 Identities = 777/820 (94), Positives = 787/820 (95). Identical to FTT1344. It is part of the duplicated region 1767715..1801625 which is identical to 1374371..1408281
SNP265812 | 1776188 | 52606 | A | G | N | D | polar, hydrophilic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1700 | hypothetical protein | pdpB1 | template | 1775771 | 1779052 |  | Similar to AAP58967.1 (Q7X3J0) PdpB from Francisella novicida (1093 aa). BLAST Score = 1914 bits (4959), Expect = 0.0 Identities = 975/1093 (89),Positives = 988/1093 (90). This protein is identical to FTT1345. It is part of the duplicated region 1767715..1801625 which is identical to 1374371..140828
SNP120634 | 1776462 | 52332 | G | T | W | L | aromatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1700 | hypothetical protein | pdpB1 | template | 1775771 | 1779052 |  | Similar to AAP58967.1 (Q7X3J0) PdpB from Francisella novicida (1093 aa). BLAST Score = 1914 bits (4959), Expect = 0.0 Identities = 975/1093 (89),Positives = 988/1093 (90). This protein is identical to FTT1345. It is part of the duplicated region 1767715..1801625 which is identical to 1374371..140828
[NAME] | 1777006 | 51788 | G | T | K | N | polar, hydrophilic, charged(+) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1700 | hypothetical protein | pdpB1 | template | 1775771 | 1779052 |  | Similar to AAP58967.1 (Q7X3J0) PdpB from Francisella novicida (1093 aa). BLAST Score = 1914 bits (4959), Expect = 0.0 Identities = 975/1093 (89),Positives = 988/1093 (90). This protein is identical to FTT1345. It is part of the duplicated region 1767715..1801625 which is identical to 1374371..140828
SNP197512 | 1777718 | 51076 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1700 | hypothetical protein | pdpB1 | template | 1775771 | 1779052 |  | Similar to AAP58967.1 (Q7X3J0) PdpB from Francisella novicida (1093 aa). BLAST Score = 1914 bits (4959), Expect = 0.0 Identities = 975/1093 (89),Positives = 988/1093 (90). This protein is identical to FTT1345. It is part of the duplicated region 1767715..1801625 which is identical to 1374371..140828
SNP30952 | 1777733 | 51061 | G | A | D | N | polar, hydrophilic, charged(-) | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1700 | hypothetical protein | pdpB1 | template | 1775771 | 1779052 |  | Similar to AAP58967.1 (Q7X3J0) PdpB from Francisella novicida (1093 aa). BLAST Score = 1914 bits (4959), Expect = 0.0 Identities = 975/1093 (89),Positives = 988/1093 (90). This protein is identical to FTT1345. It is part of the duplicated region 1767715..1801625 which is identical to 1374371..140828
SNP142167 | 1806912 | 87592 | C | T | V | M | aliphatic, hydrophobic, neutral | hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1721c | Amidophosphoribosyltransferase | purF | complement | 1805989 | 1807479 | 2.4.2.14 | Similar [NAME] from Salmonella typhimurium (505 aa). FASTA: opt: 1866 Z-score: 2060.2 E(): 6.7e-107 Smith-Waterman score: 1866; 57.320identity in 485 aa overlap
SNP57026 | 1809876 | 84628 | T | C | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1724c | outer membrane protein tolC precursor | tolC | complement | 1809580 | 1811109 |  | Similar to TOLC_ECOLI (P02930) Outer membrane protein tolC precursor from E. coli (495 aa). FASTA: opt: 548 Z-score: 649.7 E(): 2.7e-28 Smith-Waterman score: 548; 28.000 identity in 425 aa overlap
SNP42971 | 1857785 | 15021 | A | G | I | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Petrosino [12] | FTT1769c | ClpB protein | clpB | complement | 1857772 | 1860351 |  | Similar to FASTA: AAO89660 (Q83F55) ClpB protein from Coxiella burnetii (859 aa). FASTA: opt: 3593 Z-score: 3223.6 E(): 1.1e-171 Smith-Waterman score: 3593; 65.357 identity in 840 aa overlap
[NAME] | 1857956 | 14850 | C | T | G | E | aliphatic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1769c | ClpB protein | clpB | complement | 1857772 | 1860351 |  | Similar to FASTA: AAO89660 (Q83F55) ClpB protein from Coxiella burnetii (859 aa). FASTA: opt: 3593 Z-score: 3223.6 E(): 1.1e-171 Smith-Waterman score: 3593; 65.357 identity in 840 aa overlap
SNP326385 | 1858311 | 14495 | C | T | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Petrosino [12] | FTT1769c | ClpB protein | clpB | complement | 1857772 | 1860351 |  | Similar to FASTA: AAO89660 (Q83F55) ClpB protein from Coxiella burnetii (859 aa). FASTA: opt: 3593 Z-score: 3223.6 E(): 1.1e-171 Smith-Waterman score: 3593; 65.357 identity in 840 aa overlap
SNP257156 | 1868315 | 4491 | G | T | Q | H | polar, hydrophilic, neutral | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT1779 | conserved hypothetical membrane, pseudogene | N\A | template | 1868190 | 1868711 |  | Similar to AAO91223 (Q83AZ7) Membrane protein, putative, from Coxiella burnetii (205 aa). FASTA: opt: 303 Z-score: 367.4 E(): 1.3e-12 Smith-Waterman score: 303; 29.299identity in 157 aa overlap. Contains a frameshift after aa 149. This CDS is disrupted by the insertion of an ISFtu1 element occurring near the C-terminal end. ORF ftt1779
SNP138963 | 1868398 | 4408 | G | A | G | E | aliphatic, neutral | polar, hydrophilic, charged(-) | Non-Conservative | Petrosino [12] | FTT1779 | conserved hypothetical membrane, pseudogene | N\A | template | 1868190 | 1868711 |  | Similar to AAO91223 (Q83AZ7) Membrane protein, putative, from Coxiella burnetii (205 aa). FASTA: opt: 303 Z-score: 367.4 E(): 1.3e-12 Smith-Waterman score: 303; 29.299identity in 157 aa overlap. Contains a frameshift after aa 149. This CDS is disrupted by the insertion of an ISFtu1 element occurring near the C-terminal end. ORF ftt1779
SNP349189 | 1868590 | 4216 | G | T | G | V | aliphatic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1779 | conserved hypothetical membrane, pseudogene | N\A | template | 1868190 | 1868711 |  | Similar to AAO91223 (Q83AZ7) Membrane protein, putative, from Coxiella burnetii (205 aa). FASTA: opt: 303 Z-score: 367.4 E(): 1.3e-12 Smith-Waterman score: 303; 29.299identity in 157 aa overlap. Contains a frameshift after aa 149. This CDS is disrupted by the insertion of an ISFtu1 element occurring near the C-terminal end. ORF ftt1779
SNP209683 | 1874478 | 1880704 | G | C | D | H | polar, hydrophilic, charged(-) | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Petrosino [12] | FTT1786 | conserved hypothetical, pseudogene | N\A | template | 1874256 | 1874747 |  | Similar to O86705 Hypothetical protein SCO6523 from Streptomyces coelicolour (346 aa). FASTA: opt: 659 Z-score: 775.4 E(): 2.5e-35 Smith-Waterman score: 659; 37.262 identity in 263 aa overlap. Contains a frameshift after aa 165. Truncation at N-terminus according to FASTA hits ORF ftt1786
SNP126000 | 1885513 | 1891137 | C | A | G | C | aliphatic, neutral | polar, hydrophobic, neutral | Non-Conservative | Petrosino [12] | FTT1797c | peptide methionine sulfoxide reductase msrA | msrA2 | complement | 1884926 | 1885615 | 1.8.4.6 | Similar to MSA2_CAUCR (Q9A9E9) Peptide methionine sulfoxide reductase from Caulobacter crescentus (196 aa). FASTA opt: 510 Z-score: 598.2 E(): 2e-25 Smith-Waterman score: 510; 39.024 identity in 205 aa overlap
SNP171669 | 7204 | 1872213 | T | G | D | E | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(-) | Conservative | Twine [19] | FTT0007 | Aspartyl-tRNA synthetase | aspS | template | 6044 | 7822 | 6.1.1.12 | Similar to SYD_ECOLI (P21889) Aspartyl-tRNA synthetase from E. coli (590 aa.) FASTA: opt: 2335 Z-score: 2790.0 E(): 1.6e-147 Smith-Waterman score: 2335; 58.853 identity in 593 aa overlap
SNP47305 | 7658 | 1871759 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Twine [19] | FTT0007 | Aspartyl-tRNA synthetase | aspS | template | 6044 | 7822 | 6.1.1.12 | Similar to SYD_ECOLI (P21889) Aspartyl-tRNA synthetase from E. coli (590 aa.) FASTA: opt: 2335 Z-score: 2790.0 E(): 1.6e-147 Smith-Waterman score: 2335; 58.853 identity in 593 aa overlap
SNP162015 | 209681 | 1781687 | G | C | G | A | aliphatic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Twine [19] | FTT0192 | Lysyl-tRNA synthetase | lysU | template | 208813 | 210543 | 6.1.1.6 | Similar to SYK2_ECOLI (P14825) Lysyl-tRNA synthetase, heat inducible, from E. coli (504 aa). FASTA: opt: 2003 Z-score: 2242.9 E(): 4.9e-117 Smith-Waterman score: 2003; 61.066 identity in 488 aa overlap
SNP163882 | 675270 | 1014884 | G | A | A | T | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Twine [19] | FTT0655 | hypothetical protein | N\A | template | 674925 | 675671 |  | Similar to YO32_SHEON (Q8EEF0) Hypothetical UPF0082 protein SO2432 from Shewanella oneidensis (248 aa). FASTA: opt: 1090 Z-score: 1308.8 E(): 5.2e-65 Smith-Waterman score: 1090; 64.516 identity in 248 aa overlap. ORF ftt0655
SNP98006 | 675619 | 1014535 | A | G | N | S | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Twine [19] | FTT0655 | hypothetical protein | N\A | template | 674925 | 675671 |  | Similar to YO32_SHEON (Q8EEF0) Hypothetical UPF0082 protein SO2432 from Shewanella oneidensis (248 aa). FASTA: opt: 1090 Z-score: 1308.8 E(): 5.2e-65 Smith-Waterman score: 1090; 64.516 identity in 248 aa overlap. ORF ftt0655
SNP85959 | 927977 | 1193431 | A | C | Y | S | aromatic, hydrophobic, polar | polar, hydrophilic, neutral | Non-Conservative | Twine [19] | FTT0918 | hypothetical protein | N\A | template | 927667 | 929340 |  | ORF ftt0918
SNP36912 | 929717 | 1191688 | A | G | I | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Twine [19] | FTT0919 | hypothetical protein | N\A | template | 929357 | 930802 |  | ORF ftt0919
SNP153987 | 700266 | 989875 | A | G | Y | H | aromatic, hydrophobic, polar | aromatic, polar, hydrophilic, charged(+) | Non-Conservative | Type IV Pili [17] | FTT0683c | Type IV pili leader peptidase and methylase. | pilD | complement | 700057 | 700875 | 3.4.23.43 | Similar to [NAME] prepilin peptidase PilD from Pseudomonas syringae (pv. [NAME]) (290 aa). FASTA: opt: 784 Z-score: 898.0 E(): 4e-42 Smith-Waterman score: 784; 44.531identity in 256 aa overlap. Cleaves the leader peptide of the fiber building block proteins and methylates the resulting N-terminal residue.
SNP294153 | 871532 | 1249875 | T | C | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Type IV Pili [17] | FTT0861c | Type IV pili fiber building block protein | N\A | complement | 871497 | 872090 |  | Similar to FMA2_BACNO (P17824) Fimbrial protein precursor ([NAME]) from Bacteroides nodosus (Dichelobacter nodosus) (160 aa). FASTA: opt: 169 Z-score: 222.1 E(): 0.00018 Smith-Waterman score: 169; 34.646 identity in 127 aa overlap The pili fiber building block protein has a highly distinct primary structure; a short positively charged leader sequence, and a highly conserved and highly hydrophobic amino-terminal domain which forms the core of the pilus fiber; A variety of studies suggest that the invariant glycine (G) at -1 is required for prepilin cleavage and assembly and that the glutamate (E) at + 5 is essential for assembly and efficient N-terminal methylation but not cleavage. The region near the carboxy terminus is often hydrophilic and is stabilized by one or two disulfide bridges that may be involved in recognition of receptors. The genes with these characteristics are usually termed pilA, pilE, pilV, pilW, pilX and FimU. ([NAME].. 'Type IV Pili and twitching motility'. Annu. Rev. [NAME]. 2002. 56:289-314.) This protein has all the characteristics described above, but shows a weak global homology. ORF ftt0861c
SNP67433 | 897193 | 1224215 | C | T | V | I | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Type IV Pili [17] | FTT0888c | Type IV pili fiber building block protein | N\A | complement | 896762 | 897358 |  | Similar to Q59607 [NAME] precursor from Neisseria gonorrhoeae (169 aa). FASTA: opt: 244 Z-score: 305.7 E(): 3.5e-09 Smith-Waterman score: 244; 30.435 identity in 138 aa overlap. The pili fiber building block protein has a highly distinct primary structure; a short positively charged leader sequence, and a highly conserved and highly hydrophobic amino-terminal domain which forms the core of the pilus fiber; A variety of studies suggest that the invariant glycine (G) at -1 is required for prepilin cleavage and assembly and that the glutamate (E) at + 5 is essential for assembly and efficient N-terminal methylation but not cleavage. The region near the carboxy terminus is often hydrophilic and is stabilized by one or two disulfide bridges that may be involved in recognition of receptors. The genes with these characteristics are usually termed pilA, pilE, pilV, pilW, pilX and FimU. ([NAME].. 'Type IV Pili and twitching motility'. Annu. Rev. [NAME]. 2002. 56:289-314.) This protein has all the characteristics described above. ORF ftt0888c
SNP200083 | 898368 | 1223040 | C | T | S | N | polar, hydrophilic, neutral | polar, hydrophilic, neutral | Conservative | Type IV Pili [17] | FTT0889c | Type IV pili fiber building block protein | N\A | complement | 898028 | 898468 |  | Similar to Q820M2 Fimbrial protein pilin:bacterial general secretion pathway protein H from Nitrosomonas europaea (136 aa). FASTA: opt: 216 Z-score: 280.1 E(): 1e-07 Smith-Waterman score: 218; 32.639 identity in 144 aa overlap. The pili fiber building block protein has a highly distinct primary structure; a short positively charged leader sequence, and a highly conserved and highly hydrophobic amino-terminal domain which forms the core of the pilus fiber; A variety of studies suggest that the invariant glycine (G) at -1 is required for prepilin cleavage and assembly and that the glutamate (E) at + 5 is essential for assembly and efficient N-terminal methylation but not cleavage. The region near the carboxy terminus is often hydrophilic and is stabilized by one or two disulfide bridges that may be involved in recognition of receptors. The genes with these characteristics are usually termed pilA, pilE, pilV, pilW, pilX and FimU. ([NAME].. 'Type IV Pili and twitching motility'. Annu. Rev. [NAME]. 2002. 56:289-314.) This protein has all the characteristics described above. ORF ftt0889c
SNP289947 | 1066831 | 928437 | A | G | L | S | aliphatic, hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Type IV Pili [17] | FTT1057c | Type IV pili lipoprotein | N\A | complement | 1066089 | 1066994 |  | Similar to Q9KRM4 Fimbrial biogenesis and twitching motility protein, putative from Vibrio cholerae (237 aa). FASTA: opt: 249 Z-score: 293.4 E(): 1.9e-08 Smith-Waterman score: 249; 25.346 identity in 217 aa overlap. Tetratrico peptide repeat (TPR) containing protein. Shows a weak similarity to the lipoprotein pilF (Pseudomonas) that has an N-terminal type II (lipoprotein) signal sequence, followed by six tandem degenerated 34-amino acid repeats, which are involved in protein-protein interactions. ORF ftt1057c
SNP236782 | 1147796 | 1108744 | G | C | M | I | hydrophobic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Type IV Pili [17] | FTT1134 | Type IV pili polytopic inner membrane protein | pilC | template | 1147014 | 1148243 |  | Similar to Q888U1 Type IV pilus biogenesis protein PilC from Pseudomonas syringae (pv. [NAME]) (405 aa). FASTA: opt: 1017 Z-score: 1153.2 E(): 2.4e-56 Smith-Waterman score: 1017; 39.055identity in 402 aa overlap. Termed pilF in N. gonorrhoeae.
SNP282262 | 1169599 | 1130535 | G | T | P | Q | hydrophobic, neutral | polar, hydrophilic, neutral | Non-Conservative | Type IV Pili [17] | FTT1156c | Type IV [NAME] outer membrane protein | pilQ | complement | 1168800 | 1170584 |  | Similar to Q8EK21 Type IV pilus biogenesis protein PilQ from Shewanella oneidensis (684 aa). FASTA: opt: 1014 Z-score: 1145.2 E(): 6.8e-56 Smith-Waterman score: 1014; 31.658 identity in 597 aa overlap. The nearest gene neighbours show similarity to pilN, pilO and pilP. Also required for type II protein secretion.
SNP137653 | 1169612 | 1130548 | C | T | E | K | polar, hydrophilic, charged(-) | polar, hydrophilic, charged(+) | Non-Conservative | Type IV Pili [17] | FTT1156c | Type IV [NAME] outer membrane protein | pilQ | complement | 1168800 | 1170584 |  | Similar to Q8EK21 Type IV pilus biogenesis protein PilQ from Shewanella oneidensis (684 aa). FASTA: opt: 1014 Z-score: 1145.2 E(): 6.8e-56 Smith-Waterman score: 1014; 31.658 identity in 597 aa overlap. The nearest gene neighbours show similarity to pilN, pilO and pilP. Also required for type II protein secretion.
[NAME] | 1169950 | 1130886 | T | C | H | R | aromatic, polar, hydrophilic, charged(+) | polar, hydrophilic, charged(+) | Non-Conservative | Type IV Pili [17] | FTT1156c | Type IV [NAME] outer membrane protein | pilQ | complement | 1168800 | 1170584 |  | Similar to Q8EK21 Type IV pilus biogenesis protein PilQ from Shewanella oneidensis (684 aa). FASTA: opt: 1014 Z-score: 1145.2 E(): 6.8e-56 Smith-Waterman score: 1014; 31.658 identity in 597 aa overlap. The nearest gene neighbours show similarity to pilN, pilO and pilP. Also required for type II protein secretion.
SNP138359 | 1170173 | 1131109 | T | C | K | E | polar, hydrophilic, charged(+) | polar, hydrophilic, charged(-) | Non-Conservative | Type IV Pili [17] | FTT1156c | Type IV [NAME] outer membrane protein | pilQ | complement | 1168800 | 1170584 |  | Similar to Q8EK21 Type IV pilus biogenesis protein PilQ from Shewanella oneidensis (684 aa). FASTA: opt: 1014 Z-score: 1145.2 E(): 6.8e-56 Smith-Waterman score: 1014; 31.658 identity in 597 aa overlap. The nearest gene neighbours show similarity to pilN, pilO and pilP. Also required for type II protein secretion.
[NAME] | 1170248 | 1131184 | A | C | Y | D | aromatic, hydrophobic, polar | polar, hydrophilic, charged(-) | Non-Conservative | Type IV Pili [17] | FTT1156c | Type IV [NAME] outer membrane protein | pilQ | complement | 1168800 | 1170584 |  | Similar to Q8EK21 Type IV pilus biogenesis protein PilQ from Shewanella oneidensis (684 aa). FASTA: opt: 1014 Z-score: 1145.2 E(): 6.8e-56 Smith-Waterman score: 1014; 31.658 identity in 597 aa overlap. The nearest gene neighbours show similarity to pilN, pilO and pilP. Also required for type II protein secretion.
[NAME] | 1170538 | 1131474 | T | C | D | G | polar, hydrophilic, charged(-) | aliphatic, neutral | Non-Conservative | Type IV Pili [17] | FTT1156c | Type IV [NAME] outer membrane protein | pilQ | complement | 1168800 | 1170584 |  | Similar to Q8EK21 Type IV pilus biogenesis protein PilQ from Shewanella oneidensis (684 aa). FASTA: opt: 1014 Z-score: 1145.2 E(): 6.8e-56 Smith-Waterman score: 1014; 31.658 identity in 597 aa overlap. The nearest gene neighbours show similarity to pilN, pilO and pilP. Also required for type II protein secretion.
SNP97108 | 1171314 | 1132250 | G | A | A | V | aliphatic, hydrophobic, neutral | aliphatic, hydrophobic, neutral | Conservative | Type IV Pili [17] | FTT1158c | Type IV pili glycosylation protein | N\A | complement | 1171193 | 1171789 |  | Similar to Q8PH76 [NAME] assembly membrane protein from [NAME] axonopodis (pv. [NAME]) (221 aa). FASTA: opt: 144 Z-score: 177.4 E(): 0.055 Smith-Waterman score: 144; 25.946 identity in 185 aa overlap. Weak similarity to type IV pili glycosylation protein (pilO). The nearest gene neighbours show similarity to pilN, pilP and pilQ, which indicates that this protein could be pilO. [NAME] is required for glycosylation of Pseudomonas aeruginosa pilin. ORF ftt1158c
SNP347103 | 1340423 | 1383562 | A | C | S | A | polar, hydrophilic, neutral | aliphatic, hydrophobic, neutral | Non-Conservative | Type IV Pili [17] | FTT1314c | Type IV pili fiber building block protein | N\A | complement | 1339893 | 1340477 |  | Similar to Q8EBJ4 Type IV pilus biogenesis protein (164 aa). FASTA: opt: 157 Z-score: 204.8 E(): 0.0016 Smith-Waterman score: 157; 27.607 identity in 163 aa overlap. The pili fiber building block protein has a highly distinct primary structure; a short positively charged leader sequence, and a highly conserved and highly hydrophobic amino-terminal domain which forms the core of the pilus fiber; A variety of studies suggest that the invariant glycine (G) at -1 is required for prepilin cleavage and assembly and that the glutamate (E) at + 5 is essential for assembly and efficient N-terminal methylation but not cleavage. The region near the carboxy terminus is often hydrophilic and is stabilized by one or two disulfide bridges that may be involved in recognition of receptors. The genes with these characteristics are usually termed pilA, pilE, pilV, pilW, pilX and FimU. ([NAME].. 'Type IV Pili and twitching motility'. Annu. Rev. [NAME]. 2002. 56:289-314.) This protein has all the characteristics described above, except the glutamate (E) at + 5, but shows a weak global homology. ORF ftt1314c