Spreadsheet: 5289afa9-cb95-4865-9aa1-62bbe900ffe5
Sheet: Sheet1

Unnamed: 0 | TABLE 3S: Comparison 3 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10
 | GENES DOWNREGULATED |  |  |  |  |  |  | GENES UPREGULATED
Locus | [NAME] |  |  | log2 | Fold |  | locus | [NAME] | log2 | fold
MSMEG_5474 | universal stress protein family protein |  |  | -2.1935267 | -4.574222997025968 |  | MSMEG_5438 | dimethyladenosine transferase | 2.8901136 | 7.413288205720915
MSMEG_6092 | [NAME] |  |  | -2.168561 | -4.495747468709524 |  | MSMEG_1558 | conserved hypothetical protein | 1.9785374 | 3.940933485267921
MSMEG_5763 | conserved hypothetical protein |  |  | -2.1543882 | -4.451798209874788 |  | MSMEG_4217 | [NAME] protein | 1.9483947 | 3.859448481866639
MSMEG_0319 | acyltransferase |  |  | -2.0853212 | -4.243695671932452 |  | MSMEG_1247 | conserved hypothetical protein | 1.9463234 | 3.853911386673779
MSMEG_4465 | cutinase |  |  | -2.0543563 | -4.153582758953 |  | MSMEG_2199 | conserved hypothetical protein | 1.9329886 | 3.81845388348346
[NAME] | MmpS1 protein |  |  | -1.9561523 | -3.880257244207276 |  | MSMEG_2288 | conserved hypothetical protein | 1.8592275 | 3.628133394549087
MSMEG_2517 | hydrolase, alpha/beta fold family protein, putative |  |  | -1.8972487 | -3.725021364405773 |  | MSMEG_1244 | conserved hypothetical protein | 1.771457 | 3.413985663486517
MSMEG_2868 | transcriptional regulator, PadR family protein |  |  | -1.8482443 | -3.600617381180902 |  | MSMEG_0581 | 4-aminobutyrate transaminase | 1.6851662 | 3.215774402259089
MSMEG_3523 | probable membrane protein |  |  | -1.6520784 | -3.142860853696708 |  | MSMEG_3235 | ABC-type amino acid transport system, secreted component | 1.5237986 | 2.875471622289227
MSMEG_1623 | short chain dehydrogenase |  |  | -1.6511861 | -3.14091761025796 |  | MSMEG_3564 | bacterioferritin | 1.5098603 | 2.847824615406382
MSMEG_6694 | conserved domain protein |  |  | -1.6391178 | -3.11475308198057 |  | MSMEG_4598 | putative conserved lipoprotein lpph | 1.4378101 | 2.709093337203108
MSMEG_1562 | conserved hypothetical alanine and proline rich protein; this gene contains a frame shift which is not the result of sequencing error |  |  | -1.6176946 | -3.06884248872029 |  | MSMEG_1245 | phosphoadenosine phosphosulfate reductase | 1.4024287 | 2.643462205220122
MSMEG_6599 | regulatory protein, LuxR; this gene contains a frame shift which is not the result of sequencing error |  |  | -1.6039408 | -3.039724977217409 |  | MSMEG_6091 | negative regulator of genetic competence [NAME]/mecB | 1.3860024 | 2.61353485553709
MSMEG_4770 | conserved hypothetical protein |  |  | -1.5999333 | -3.031292984264306 |  | MSMEG_5308 | conserved hypothetical protein | 1.3808256 | 2.604173554932507
MSMEG_2600 | regulatory protein |  |  | -1.5854057 | -3.000921748566075 |  | MSMEG_0732 | chaperone ClpB | 1.3632113 | 2.572571723268095
MSMEG_1164 | putative transporter; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error |  |  | -1.568059 | -2.965055275088785 |  | MSMEG_2658 | beta-lactamase | 1.2994008 | 2.461266367283581
MSMEG_3979 | alpha/beta hydrolase; this gene contains a frame shift which is not the result of sequencing error |  |  | -1.5382991 | -2.904518663135145 |  | MSMEG_3106 | quinone oxidoreductase | 1.2920876 | 2.448821471974275
MSMEG_4439 | acetyltransferase |  |  | -1.485235 | -2.799627724256089 |  | MSMEG_5486 | peptidase S1 and S6, chymotrypsin/Hap | 1.2845786 | 2.43610885497025
MSMEG_5817 | conserved hypothetical protein |  |  | -1.479347 | -2.788225026390373 |  | MSMEG_5245 | universal stress protein family protein | 1.281457 | 2.430843475926787
MSMEG_6070 | ribosomal protein L31 |  |  | -1.4716681 | -2.773423823323727 |  | MSMEG_3174 | [NAME] peptidase | 1.2798107 | 2.428071153966689
MSMEG_1569 | hypothetical protein |  |  | -1.4664292 | -2.763370873448673 |  | MSMEG_0391 | [NAME] protein | 1.2760352 | 2.421725254323817
MSMEG_5568 | clavaldehyde dehydrogenase |  |  | -1.4537985 | -2.739283339817104 |  | MSMEG_2750 | iron-dependent repressor IdeR | 1.2668421 | 2.406342668338341
MSMEG_0721 | RemQ protein; this gene contains a frame shift which is not the result of sequencing error |  |  | -1.4482517 | -2.728771703783748 |  | MSMEG_3544 | conserved hypothetical protein | 1.260305 | 2.395463780444523
MSMEG_2264 | peptidase M52, hydrogen uptake protein |  |  | -1.4481252 | -2.728532447061061 |  | MSMEG_5538 | [NADP+] succinate-semialdehyde dehydrogenase | 1.2511462 | 2.38030459597914
MSMEG_0050 | conserved hypothetical protein |  |  | -1.4343469 | -2.70259793807387 |  | MSMEG_1060 | putative [NAME] protein | 1.2470379 | 2.373535947943585
MSMEG_6526 | pyridoxamine 5'-phosphate oxidase family protein |  |  | -1.4306667 | -2.695712611948112 |  | MSMEG_0066 | early secretory antigenic target, 6 kDa | 1.2452307 | 2.370564586317798
MSMEG_5165 | integral membrane protein |  |  | -1.4175749 | -2.67136090596774 |  | [NAME] | universal stress protein family protein | 1.2335993 | 2.351529286545849
MSMEG_6527 | transcriptional regulator, TetR family protein |  |  | -1.4121883 | -2.661405425102392 |  | MSMEG_1642 | ABC transporter, ATP-binding protein | 1.2255803 | 2.338494928526292
MSMEG_6372 | membrane protein |  |  | -1.3923559 | -2.625070010674324 |  | MSMEG_2321 | phosphoserine phosphatase | 1.2255098 | 2.33838065637614
MSMEG_3561 | glutamine synthetase, catalytic domain |  |  | -1.3752598 | -2.594146220153152 |  | MSMEG_2078 | antigen 85-C | 1.2196975 | 2.328978788400263
[NAME] | conserved hypothetical protein |  |  | -1.3728211 | -2.58976483651858 |  | MSMEG_5302 | aerobic C4-dicarboxylate transport protein | 1.2158607 | 2.322793174794118
MSMEG_0081 | conserved hypothetical protein |  |  | -1.372028 | -2.588341543324234 |  | MSMEG_2983 | conserved hypothetical protein | 1.1972365 | 2.293000230590259
MSMEG_2222 | hypothetical protein |  |  | -1.3714477 | -2.587300635498688 |  | MSMEG_0736 | conserved hypothetical protein | 1.182131 | 2.269117001516502
MSMEG_6316 | [NAME] |  |  | -1.3702687 | -2.585187104041007 |  | MSMEG_3545 | hypothetical protein | 1.1695276 | 2.249380305552818
MSMEG_1674 | hypothetical protein |  |  | -1.3674382 | -2.580120060478441 |  | MSMEG_6084 | AraC-family transcriptional regulator; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00165 | 1.1568724 | 2.22973521850877
MSMEG_2586 | conserved hypothetical protein, putative |  |  | -1.3627188 | -2.571693661513672 |  | MSMEG_2417 | conserved hypothetical protein | 1.1529268 | 2.223645488016345
MSMEG_1271 | hypothetical protein |  |  | -1.3593465 | -2.565689347247314 |  | MSMEG_3070 | LprG protein | 1.1303356 | 2.189096571366374
MSMEG_0352 | conserved hypothetical protein |  |  | -1.3493133 | -2.547908201996563 |  | MSMEG_5244 | two component transcriptional regulatory protein devr | 1.1240764 | 2.1796196462775
MSMEG_1344 | translocase |  |  | -1.3436859 | -2.537989147156932 |  | MSMEG_4276 | branched-chain amino acid aminotransferase | 1.1003805 | 2.144112344061427
MSMEG_0223 | conserved hypothetical protein |  |  | -1.3402807 | -2.532005783302179 |  | MSMEG_2396 | conserved hypothetical protein | 1.1000845 | 2.14367247830082
MSMEG_3892 | hypothetical protein |  |  | -1.3364848 | -2.525352535448952 |  | MSMEG_3902 | ATPase, AAA family protein | 1.0901053 | 2.128895743926317
MSMEG_4878 | 2Fe-2S iron-sulfur cluster binding domain protein |  |  | -1.3337481 | -2.520566644291449 |  | MSMEG_1064 | phosphate/sulphate permease | 1.0621079 | 2.087980010241516
MSMEG_5388 | conserved hypothetical protein |  |  | -1.3328943 | -2.519075391420068 |  | MSMEG_1403 | cutinase superfamily protein | 1.0615989 | 2.087243475952496
MSMEG_2538 | MarR-family protein transcriptional regulator |  |  | -1.3326694 | -2.518682726384739 |  | MSMEG_0641 | binding-protein-dependent transport systems inner membrane component | 1.0543485 | 2.076780151234557
MSMEG_4051 | hypothetical protein |  |  | -1.3267717 | -2.508407433441192 |  | MSMEG_3894 | proteasome alpha subunit | 1.0505255 | 2.071284173157717
MSMEG_6377 | hypothetical protein |  |  | -1.321339 | -2.498979384737177 |  | MSMEG_5246 | conserved hypothetical protein | 1.04648 | 2.065484165230655
MSMEG_3911 | oxidoreductase |  |  | -1.3130579 | -2.484676279632021 |  | MSMEG_3102 | transaldolase | 1.0459739 | 2.064759716768575
MSMEG_1273 | conserved hypothetical protein |  |  | -1.3097725 | -2.479024449250374 |  | MSMEG_0777 | F420-dependent glucose-6-phosphate dehydrogenase | 1.038231 | 2.053707898660442
MSMEG_4811 | conserved hypothetical protein |  |  | -1.3056066 | -2.471876388542985 |  | MSMEG_5078 | glucose-1-phosphate adenylyltransferase | 1.0311023 | 2.043585068775961
MSMEG_3161 | conserved hypothetical protein |  |  | -1.303923 | -2.468993434330907 |  | MSMEG_5468 | conserved hypothetical protein | 1.0310938 | 2.043573028516986
[NAME] | conserved domain protein |  |  | -1.2995995 | -2.461605376771475 |  | MSMEG_3199 | quinolinate synthetase complex, A subunit | 1.0159571 | 2.022244027331733
[NAME] | L-carnitine dehydratase/bile acid-inducible protein F |  |  | -1.2912538 | -2.447406594009052 |  | MSMEG_1605 | phosphate transport system regulatory protein PhoU | 1.0085375 | 2.011870576984266
MSMEG_0853 | conserved hypothetical protein |  |  | -1.2888633 | -2.44335467665603 |  | MSMEG_3634 | IMP dehydrogenase family protein | 1.0085254 | 2.011853703333768
MSMEG_0173 | hypothetical protein |  |  | -1.2780842 | -2.425167174007043 |  | MSMEG_5136 | helix-turn-helix motif | 1.0070844 | 2.009845216613571
MSMEG_0533 | [NAME] protein |  |  | -1.2600951 | -2.395115285954778 |  | MSMEG_2389 | DNA-binding protein [NAME] | 1.0018495 | 2.002565595585131
MSMEG_3431 | choline dehydrogenase |  |  | -1.2580773 | -2.391767741697368 |  | MSMEG_0643 | extracellular solute-binding protein, family protein 5, putative | 1.0012302 | 2.001706146643533
MSMEG_3680 | hypothetical protein |  |  | -1.2559557 | -2.388253038322147 |  | MSMEG_6089 | conserved hypothetical protein | 0.99708796 | 1.995967126859276
MSMEG_3938 | hypothetical protein |  |  | -1.2459041 | -2.371671341912564 |  | MSMEG_3932 | 14 kDa antigen | 0.9938415 | 1.991480702476231
MSMEG_6576 | pyridoxamine 5'-phosphate oxidase family protein |  |  | -1.240127 | -2.362193256851426 |  | MSMEG_4329 | propionyl-CoA carboxylase beta chain | 0.99027807 | 1.986567851890523
MSMEG_6320 | diol dehydrase gamma subunit |  |  | -1.2323018 | -2.349415369499204 |  | MSMEG_6761 | glycerol-3-phosphate dehydrogenase 2 | 0.9893751 | 1.985324865760909
MSMEG_0837 | hypothetical protein |  |  | -1.2274096 | -2.341461960278341 |  | MSMEG_4336 | conserved hypothetical protein | 0.98680997 | 1.98179806935374
MSMEG_6470 | hypothetical protein |  |  | -1.225714 | -2.338711655728557 |  | MSMEG_5247 | PhoH family protein | 0.9796343 | 1.971965484079171
MSMEG_4351 | hypothetical oxidoreductase YjgI |  |  | -1.2233393 | -2.334865263978781 |  | MSMEG_0372 | oxidoreductase, short chain dehydrogenase/reductase family protein | 0.9779374 | 1.969647418939116
MSMEG_6075 | 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase |  |  | -1.2204938 | -2.330264630291639 |  | MSMEG_2329 | methyltransferase, UbiE/COQ5 family protein | 0.976685 | 1.967938314823726
MSMEG_6476 | conserved hypothetical protein |  |  | -1.2184905 | -2.327031112881953 |  | MSMEG_4278 | glycine cleavage system T protein | 0.9698014 | 1.958570961636653
MSMEG_0492 | conserved hypothetical protein |  |  | -1.2165436 | -2.323892929694346 |  | MSMEG_6281 | N-acetylmuramoyl-L-alanine amidase | 0.96767455 | 1.955685724254985
MSMEG_3394 | cupin domain protein |  |  | -1.2004071 | -2.29804508137119 |  | MSMEG_4957 | homoserine dehydrogenase | 0.9654182 | 1.952629456329251
MSMEG_4640 | secreted protein |  |  | -1.1994334 | -2.296494614015032 |  | MSMEG_3631 | integral membrane protein | 0.95772165 | 1.942240223923508
MSMEG_1752 | hypothetical protein |  |  | -1.1894982 | -2.280734005994923 |  | MSMEG_4681 | conserved hypothetical protein | 0.9562283 | 1.940230829191717
MSMEG_2214 | alcohol dehydrogenase B; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error |  |  | -1.1893045 | -2.280427809252977 |  | MSMEG_1001 | acetyltransferase, gnat family protein, putative | 0.9555575 | 1.939328903092377
MSMEG_2498 | conserved hypothetical protein |  |  | -1.1674519 | -2.246146301586535 |  | MSMEG_0313 | phosphogluconate dehydratase | 0.9465923 | 1.927314886834695
MSMEG_1550 | PduH protein |  |  | -1.1651655 | -2.242589401869884 |  | MSMEG_5485 | molybdopterin biosynthesis protein | 0.94465077 | 1.92472291638516
MSMEG_0496 | coenzyme B12-dependent glycerol dehydrogenase small subunit |  |  | -1.1617224 | -2.237243675465395 |  | MSMEG_0314 | glucose-6-phosphate 1-dehydrogenase | 0.9341615 | 1.910779759726953
MSMEG_0962 | TetR-family protein transcriptional regulator |  |  | -1.1594507 | -2.233723633443619 |  | MSMEG_5080 | glycogen synthase | 0.9314861 | 1.907239605434915
MSMEG_1750 | hypothetical protein |  |  | -1.1583712 | -2.232052869569949 |  | MSMEG_4222 | cell division protein FtsZ | 0.9255801 | 1.899447846242982
MSMEG_1121 | conserved hypothetical protein |  |  | -1.1550173 | -2.226869939688396 |  | MSMEG_1788 | conserved hypothetical protein | 0.92423177 | 1.897673468406912
MSMEG_3591 | conserved hypothetical protein |  |  | -1.1528709 | -2.223559330255258 |  | MSMEG_3903 | Low molecular weight antigen MTB12 | 0.92224324 | 1.895059623440603
MSMEG_2712 | hydrogenase assembly chaperone HypC/HupF |  |  | -1.1487556 | -2.217225645899715 |  | MSMEG_0762 | cytochrome P450 FAS1 | 0.92077607 | 1.893133394226113
MSMEG_1687 | hypothetical protein |  |  | -1.1436734 | -2.209428738372727 |  | MSMEG_2608 | cobalt transport protein CbiM | 0.9201804 | 1.892351905438632
MSMEG_4481 | hypothetical protein |  |  | -1.1400762 | -2.203926635268749 |  | MSMEG_0216 | 3-hydroxyacyl-CoA dehydrogenase | 0.91714275 | 1.888371677315983
MSMEG_1688 | cupin domain protein |  |  | -1.1396905 | -2.203337501141609 |  | MSMEG_3069 | aminoglycosides/tetracycline-transport integral membrane protein | 0.9160929 | 1.886998008045301
MSMEG_4602 | hypothetical protein |  |  | -1.1381301 | -2.20095568855182 |  | MSMEG_2313 | ribonucleoside-diphosphate reductase, beta subunit | 0.91575706 | 1.886558791414659
MSMEG_3382 | transcriptional regulator, ArsR family protein |  |  | -1.136359 | -2.198255380612428 |  | [NAME] | enoyl-CoA hydratase | 0.9114315 | 1.88091088819277
MSMEG_1250 | ISMsm7, transposase orfA |  |  | -1.1358702 | -2.197510715112742 |  | [NAME] | aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B | 0.90990674 | 1.878924035392292
MSMEG_0972 | cytochrome C biogenesis protein transmembrane region |  |  | -1.1303011 | -2.189044222861281 |  | MSMEG_5249 | [NAME] | 0.90936035 | 1.878212567692661
MSMEG_1462 | ferredoxin |  |  | -1.1225331 | -2.177289279597944 |  | MSMEG_2823 | This gene is disrupted by an IS1549 element.; IS1549, transposase, interruption-N; identified by similarity to GP:2935133; match to protein family HMM PF01609 | 0.9083446 | 1.8768906507842
MSMEG_0601 | conserved hypothetical protein |  |  | -1.1221024 | -2.176639371958717 |  | MSMEG_3621 | NADH dehydrogenase | 0.9074296 | 1.875700648453011
MSMEG_4751 | hypothetical protein |  |  | -1.1128923 | -2.1627880645912 |  | MSMEG_5776 | phosphate transport system regulatory protein PhoU | 0.9044065 | 1.871774320603925
MSMEG_4399 | conserved hypothetical protein |  |  | -1.1058705 | -2.152287046101645 |  | MSMEG_5362 | hypothetical protein | 0.9023603 | 1.869121431605198
[NAME] | conserved hypothetical protein |  |  | -1.103826 | -2.149239115486962 |  | MSMEG_1932 | MmpS3 protein | 0.8964341 | 1.861459335310545
MSMEG_3711 | hypothetical protein |  |  | -1.1032901 | -2.148440912597477 |  | MSMEG_1738 | probable conserved transmembrane protein | 0.89615816 | 1.861103333553209
MSMEG_0849 | oxygenase |  |  | -1.1030931 | -2.148147563031424 |  | MSMEG_2379 | 3-isopropylmalate dehydrogenase | 0.8945198 | 1.858991018422586
MSMEG_6067 | ribosomal protein L33 |  |  | -1.1021638 | -2.14676429721966 |  | [NAME] | conserved hypothetical protein | 0.89202034 | 1.855773116586327
MSMEG_2123 | dihydroxyacetone kinase, DhaK subunit |  |  | -1.0958097 | -2.137330037367057 |  | MSMEG_3689 | sodium:solute symporter | 0.8919262 | 1.855652026004847
MSMEG_3098 | conserved hypothetical protein |  |  | -1.093335 | -2.13366695079801 |  | MSMEG_4219 | conserved hypothetical protein | 0.88954186 | 1.852587725474962
MSMEG_5840 | conserved hypothetical protein |  |  | -1.0890661 | -2.127362812996443 |  | MSMEG_4932 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | 0.8864228 | 1.848586817228444
MSMEG_2139 | hypothetical protein |  |  | -1.085251 | -2.121744591628401 |  | MSMEG_2723 | protein RecA | 0.8862418 | 1.848354908740317
MSMEG_5280 | cysteine dioxygenase type I superfamily protein |  |  | -1.0838742 | -2.119720723507567 |  | MSMEG_1243 | conserved hypothetical protein | 0.8848727 | 1.846601674503319
[NAME] | UDP-N-acetylmuramoylalanyl-D-glutamate-2, 6-diaminopimelate ligase |  |  | -1.083862 | -2.119702798386353 |  | MSMEG_2081 | putative acyl-CoA dehydrogenase | 0.8811725 | 1.841871609944023
MSMEG_5319 | alkylhydroperoxidase AhpD core |  |  | -1.0834107 | -2.119039822332885 |  | MSMEG_2575 | conserved hypothetical protein | 0.8805177 | 1.841035824251911
MSMEG_1871 | conserved hypothetical protein |  |  | -1.0821565 | -2.117198445759653 |  | MSMEG_0710 | co-chaperone GrpE | 0.88048303 | 1.840991582091734
MSMEG_1408 | arginine/ornithine antiporter; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error |  |  | -1.0759935 | -2.108173348276398 |  | MSMEG_0695 | isoniazid inductible protein IniA | 0.8786498 | 1.838653723062654
MSMEG_0521 | conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error |  |  | -1.072388 | -2.102911301422504 |  | [NAME] | oligopeptide transport ATP-binding protein AppF | 0.87624085 | 1.835586180059002
MSMEG_0583 | probable membrane protein |  |  | -1.0679417 | -2.096440231164737 |  | MSMEG_4236 | MraZ protein | 0.8734164 | 1.831996059121033
MSMEG_4922 | conserved hypothetical protein |  |  | -1.0661857 | -2.093890066755014 |  | MSMEG_4263 | ubiquinol-cytochrome c reductase cytochrome b subunit | 0.86940926 | 1.826914680956726
MSMEG_6539 | conserved hypothetical protein |  |  | -1.0645211 | -2.091475502846225 |  | MSMEG_2962 | protein-export membrane protein SecF | 0.8676782 | 1.824723918329791
MSMEG_0570 | conserved hypothetical protein |  |  | -1.0639931 | -2.090710201114237 |  | MSMEG_4934 | ATP:cob(I)alamin adenosyltransferase | 0.8645312 | 1.820747923745734
MSMEG_3315 | hypothetical protein |  |  | -1.0632981 | -2.089703270604215 |  | [NAME] | malate:quinone-oxidoreductase | 0.8626196 | 1.818336993676245
MSMEG_4488 | hydrolase, nudix family protein |  |  | -1.062142 | -2.088029362986062 |  | MSMEG_2326 | ABC-type molybdenum transport system, ATPase component | 0.8613076 | 1.816684133142821
MSMEG_1800 | hypothetical protein |  |  | -1.0549028 | -2.077578227319814 |  | MSMEG_3227 | pyruvate kinase | 0.85874045 | 1.813454376558053
MSMEG_2251 | nitrate/nitrite response regulator protein |  |  | -1.0526066 | -2.074274174418075 |  | [NAME] | proteasome component | 0.85606265 | 1.810091528498057
MSMEG_2301 | glyoxalase/bleomycin resistance protein/dioxygenase |  |  | -1.047115 | -2.066393485007593 |  | MSMEG_6946 | ribosomal protein L34 | 0.8559511 | 1.809951576603607
MSMEG_1079 | hypothetical protein |  |  | -1.0436833 | -2.061484051530158 |  | MSMEG_3479 | thiol peroxidase | 0.85092485 | 1.803656801815503
MSMEG_6497 | hypothetical protein |  |  | -1.0342301 | -2.048020420070761 |  | MSMEG_6904 | myo-inositol-1-phosphate synthase | 0.8501029 | 1.802629492905528
MSMEG_4015 | hypothetical protein |  |  | -1.0333154 | -2.046722342177303 |  | MSMEG_2611 | [NAME] oxidoreductase family protein | 0.849721 | 1.80215237676214
MSMEG_0249 | integral membrane protein |  |  | -1.0277066 | -2.038780698260228 |  | MSMEG_3950 | universal stress protein family protein | 0.8442932 | 1.795384941694113
MSMEG_3256 | mucin-associated surface protein |  |  | -1.0239825 | -2.033524679626087 |  | MSMEG_0642 | hypothetical ABC transporter permease protein YliD | 0.8441594 | 1.795218439862994
MSMEG_3948 | acyltransferase, ws/dgat/mgat subfamily protein |  |  | -1.0114075 | -2.01587683989729 |  | MSMEG_6076 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | 0.84265906 | 1.793352461320044
MSMEG_6659 | hypothetical protein |  |  | -1.011376 | -2.015832825448341 |  | MSMEG_4199 | conserved hypothetical protein | 0.84260213 | 1.793281695469767
MSMEG_2457 | hypothetical protein |  |  | -1.005394 | -2.0074916681156 |  | MSMEG_0388 | Macrocin-O-methyltransferase | 0.8365037 | 1.785717296306145
MSMEG_1277 | hypothetical protein |  |  | -1.0040779 | -2.005661166890404 |  | [NAME] | antigen 85-C | 0.83644676 | 1.785646819363009
MSMEG_5128 | conserved hypothetical protein |  |  | -1.0038785 | -2.005383976501011 |  | MSMEG_0383 | conserved hypothetical protein | 0.83549786 | 1.784472736750726
MSMEG_4503 | hypothetical protein |  |  | -0.9873074 | -1.982481495687307 |  | MSMEG_2415 | hemerythrin HHE cation binding region | 0.8354282 | 1.784386576220383
MSMEG_1223 | hypothetical protein |  |  | -0.97972316 | -1.972086947205126 |  | MSMEG_5782 | phosphate ABC transporter, phosphate-binding protein PstS | 0.8295974 | 1.777189348792909
MSMEG_4157 | putative transposase |  |  | -0.97655374 | -1.96775927502299 |  | MSMEG_2735 | diaminopimelate epimerase | 0.82959163 | 1.777182241010775
MSMEG_3311 | acyl carrier protein |  |  | -0.97601354 | -1.967022608891682 |  | MSMEG_6081 | conserved hypothetical protein | 0.82891715 | 1.776351577780323
MSMEG_1816 | hypothetical protein; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error; identified by Glimmer2; putative |  |  | -0.9743339 | -1.964733859536649 |  | MSMEG_3073 | 6,7-dimethyl-8-ribityllumazine synthase | 0.8271951 | 1.774232528895542
MSMEG_6456 | conserved hypothetical protein |  |  | -0.9702794 | -1.959219991405712 |  | MSMEG_3123 | FeS assembly protein SufD | 0.82576555 | 1.772475332930586
MSMEG_1270 | hypothetical protein |  |  | -0.9663345 | -1.953870025282918 |  | MSMEG_4342 | metallo-beta-lactamase family protein | 0.82173777 | 1.767533758947626
MSMEG_1221 | rifampin ADP-ribosyl transferase |  |  | -0.9661363 | -1.953601617595759 |  | MSMEG_0990 | methylthioadenosine phosphorylase | 0.82148826 | 1.767228095448724
MSMEG_2482 | hypothetical protein |  |  | -0.9638574 | -1.950518118877977 |  | MSMEG_1188 | conserved hypothetical protein | 0.82122666 | 1.766907677796502
MSMEG_4045 | muconolactone delta-isomerase |  |  | -0.96079427 | -1.946381172294237 |  | MSMEG_1831 | Transcription factor WhiB | 0.8198942 | 1.765276531329876
MSMEG_5864 | cytochrome P450 51 |  |  | -0.95178723 | -1.934267370648873 |  | MSMEG_4287 | integral membrane protein | 0.81967986 | 1.765014285147985
MSMEG_0847 | NADH-ubiquinone/plastoquinone oxidoreductase chain 4l family protein |  |  | -0.94470364 | -1.924793452404425 |  | [NAME] | ZbpA protein | 0.8196111 | 1.764930165159533
MSMEG_2676 | IS1137, transposase orfA |  |  | -0.9425936 | -1.92198036822671 |  | MSMEG_0987 | hypothetical protein | 0.8178669 | 1.762797676318425
MSMEG_6886 | transcriptional regulator |  |  | -0.9412394 | -1.920177128750274 |  | [NAME] | Transcription factor WhiB | 0.8164051 | 1.761012439300096
[NAME] | hypothetical protein |  |  | -0.94031227 | -1.918943547248653 |  | MSMEG_0944 | DNA binding domain, excisionase family protein | 0.81384146 | 1.757885934391839
MSMEG_1994 | HpcH/HpaI aldolase |  |  | -0.9382265 | -1.916171247571462 |  | MSMEG_3099 | 6-phosphogluconolactonase | 0.81313294 | 1.757022833376205
MSMEG_3430 | SAM-dependent methyltransferase |  |  | -0.9380726 | -1.915966850233155 |  | MSMEG_4788 | virulence factor [NAME] family protein; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error | 0.81050164 | 1.753821158395413
MSMEG_3909 | conserved hypothetical protein |  |  | -0.9352357 | -1.912203015436221 |  | MSMEG_2382 | 5-carboxymethyl-2-hydroxymuconate delta-isomerase | 0.8075249 | 1.750206196676956
MSMEG_1716 | IS3 family protein element, transposase orfA |  |  | -0.9312822 | -1.906970069140234 |  | MSMEG_6583 | antigen 85-C | 0.80720377 | 1.74981666101495
MSMEG_0644 | cupin domain protein |  |  | -0.9291145 | -1.904106931115536 |  | MSMEG_1472 | ribosomal protein S5 | 0.80263984 | 1.744289905868254
MSMEG_0776 | conserved hypothetical protein |  |  | -0.9261165 | -1.900154200134981 |  | MSMEG_2758 | sigma factor MysA | 0.8023982 | 1.743997775581019
MSMEG_6827 | hypothetical protein |  |  | -0.92514515 | -1.898875278727371 |  | MSMEG_0006 | DNA gyrase, A subunit | 0.7978175 | 1.738469191029057
MSMEG_6762 | transcriptional regulator |  |  | -0.923704 | -1.896979384121293 |  | MSMEG_2755 | conserved hypothetical protein | 0.7974285 | 1.738000503376919
MSMEG_5391 | hypothetical protein |  |  | -0.92248356 | -1.895375323328135 |  | MSMEG_3228 | acyl-CoA thioesterase II | 0.796669 | 1.737085782005462
MSMEG_3836 | conserved hypothetical protein |  |  | -0.92234355 | -1.895191390747035 |  | [NAME] | putative acyl-CoA dehydrogenase | 0.7942108 | 1.734128491441378
MSMEG_0773 | acetyltransferase |  |  | -0.9181194 | -1.889650466346623 |  | MSMEG_3882 | glyoxalase family protein | 0.7934607 | 1.733227100884989
MSMEG_2158 | hypothetical protein |  |  | -0.90972924 | -1.878692878778274 |  | MSMEG_6082 | carbonic anhydrase | 0.7918281 | 1.731266834842768
MSMEG_3333 | putative fatty acid desaturase, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error |  |  | -0.9021514 | -1.868850805320087 |  | MSMEG_3884 | conserved hypothetical protein | 0.79168 | 1.731089120598933
MSMEG_5646 | conserved hypothetical protein |  |  | -0.90075 | -1.867036329055159 |  | MSMEG_3074 | conserved hypothetical protein | 0.79036975 | 1.729517665924913
MSMEG_1173 | transcriptional regulator, ArsR family protein |  |  | -0.8994769 | -1.865389497646945 |  | [NAME] | glutaredoxin | 0.78963494 | 1.728636992429285
MSMEG_2064 | two-component system response regulator |  |  | -0.88941205 | -1.852421041881363 |  | MSMEG_2374 | ketol-acid reductoisomerase | 0.78736335 | 1.725917315305485
MSMEG_5550 | protein-glutamate methylesterase; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF01339 |  |  | -0.8885368 | -1.851297561341066 |  | MSMEG_5415 | enolase | 0.781752 | 1.719217412749108
[NAME] | probable membrane protein |  |  | -0.8817803 | -1.842647744458599 |  | MSMEG_3859 | glycosyl transferase, group 2 family protein | 0.78006715 | 1.717210798305568
MSMEG_0162 | NAD-dependent formate dehydrogenase delta subunit |  |  | -0.87843204 | -1.838376218109848 |  | MSMEG_3238 | 3-mercaptopyruvate sulfurtransferase | 0.7799289 | 1.717046250004261
MSMEG_2901 | conserved hypothetical protein |  |  | -0.876727 | -1.836204828190166 |  | MSMEG_0371 | MaoC like domain protein | 0.7795298 | 1.716571320540713
MSMEG_1685 | hypothetical protein |  |  | -0.8757668 | -1.834983130448144 |  | MSMEG_6114 | inorganic pyrophosphatase | 0.7782993 | 1.715107850838276
MSMEG_2341 | conserved hypothetical protein |  |  | -0.87072766 | -1.828584961319654 |  | MSMEG_4560 | periplasmic binding protein | 0.7762824 | 1.712711790647812
MSMEG_4304 | regulatory protein |  |  | -0.86924297 | -1.826704116612926 |  | MSMEG_1610 | glutamine-hydrolyzing GMP synthase | 0.7742416 | 1.710290744546258
[NAME] | hypothetical protein |  |  | -0.86580807 | -1.822360106124756 |  | MSMEG_5355 | hypothetical protein | 0.76976985 | 1.704997767256345
MSMEG_1912 | muconolactone delta-isomerase 1 |  |  | -0.85945135 | -1.814348191508669 |  | [NAME] | phosphate ABC transporter, permease protein PstC | 0.7690141 | 1.704104844924453
MSMEG_3604 | sorbitol utilization protein SOU2 |  |  | -0.85848624 | -1.813134865080366 |  | MSMEG_4268 | cytochrome c oxidase subunit 2 | 0.7655986 | 1.700075243611528
MSMEG_2660 | transcriptional regulator, AsnC family protein |  |  | -0.8570248 | -1.811299102090301 |  | MSMEG_3184 | malto-oligosyltrehalose trehalohydrolase | 0.7650845 | 1.699469534884944
MSMEG_3737 | integral membrane protein |  |  | -0.8532367 | -1.806549392823489 |  | MSMEG_4956 | threonine synthase | 0.762634 | 1.696585338907436
MSMEG_4413 | hypothetical protein |  |  | -0.85106874 | -1.803836702011014 |  | MSMEG_6078 | LpqE protein | 0.7623036 | 1.696196838498568
MSMEG_5112 | hypothetical protein |  |  | -0.848994 | -1.801244468515132 |  | MSMEG_3747 | conserved hypothetical protein; this gene contains a frame shift which is not the result of sequencing error | 0.7622102 | 1.696087030360236
MSMEG_2686 | conserved hypothetical protein |  |  | -0.84562194 | -1.797039275174581 |  | MSMEG_0402 | linear gramicidin synthetase subunit D | 0.7591801 | 1.692528468170529
MSMEG_3639 | conserved hypothetical protein |  |  | -0.84544235 | -1.796815589511283 |  | MSMEG_2407 | morphine 6-dehydrogenase | 0.75792366 | 1.691055090451329
MSMEG_1174 | cadmium inducible protein cadi |  |  | -0.8421463 | -1.792715184565556 |  | [NAME] | antigen 85-A | 0.7576123 | 1.690690169185881
MSMEG_0721 | RemQ protein; this gene contains a frame shift which is not the result of sequencing error |  |  | -0.84123284 | -1.791580464302008 |  | MSMEG_5263 | transcription elongation factor GreA | 0.7551558 | 1.687813853370323
[NAME] | exodeoxyribonuclease VII, small subunit |  |  | -0.8410412 | -1.791342496008071 |  | MSMEG_3051 | [NAME] | 0.75496596 | 1.687591773517991
MSMEG_5536 | chorismate mutase |  |  | -0.8399807 | -1.79002619518969 |  | MSMEG_1635 | nitroreductase family protein | 0.7509632 | 1.682916036510248
MSMEG_6829 | transcriptional regulatory protein |  |  | -0.8370167 | -1.786352382611303 |  | MSMEG_4340 | NAD/mycothiol-dependent formaldehyde dehydrogenase | 0.7496961 | 1.681438602482885
MSMEG_4822 | conserved domain protein |  |  | -0.8345435 | -1.783292677077797 |  | MSMEG_4286 | lipoic acid synthetase | 0.74912846 | 1.680777157037028
[NAME] | conserved hypothetical protein |  |  | -0.82921946 | -1.776723842949353 |  | MSMEG_3255 | [NAME] subfamily protein, putative | 0.7478573 | 1.679296874888326
MSMEG_3499 | conserved hypothetical protein |  |  | -0.8277776 | -1.774949034523554 |  | [NAME] | glycerate kinase | 0.7444341 | 1.675316994011639
MSMEG_4068 | hypothetical protein |  |  | -0.8199256 | -1.76531495267654 |  | MSMEG_2612 | conserved hypothetical protein | 0.74390936 | 1.674707755081152
MSMEG_3712 | hypothetical protein |  |  | -0.8131706 | -1.757068699163276 |  | MSMEG_1833 | conserved hypothetical protein | 0.7438727 | 1.674665199998808
MSMEG_3589 | conserved hypothetical protein |  |  | -0.8084511 | -1.751330177416606 |  | MSMEG_6256 | aspartate-semialdehyde dehydrogenase | 0.74145824 | 1.671864864216153
MSMEG_1948 | hypothetical protein |  |  | -0.8071343 | -1.749732404236274 |  | MSMEG_3904 | LppK protein | 0.7402309 | 1.670443168023742
MSMEG_3140 | ABC transporter ATP-binding protein, possibly in EF-3 subfamily protein |  |  | -0.8064384 | -1.748888604873266 |  | MSMEG_4804 | conserved hypothetical protein | 0.73928773 | 1.669351463297188
MSMEG_2791 | pyridoxamine 5'-phosphate oxidase family protein |  |  | -0.8059133 | -1.748252174944846 |  | MSMEG_5273 | beta-ketoadipyl CoA thiolase | 0.73816866 | 1.668057082472342
MSMEG_1921 | SEC-C motif domain protein |  |  | -0.8034513 | -1.745271277247077 |  | MSMEG_5518 | antigen 34 kDa | 0.7360942 | 1.665660296607469
MSMEG_2195 | transcriptional regulator, TetR family protein |  |  | -0.801355 | -1.742737162067636 |  | MSMEG_1959 | putative membrane protein | 0.73606515 | 1.665626757333342
MSMEG_3425 | TetR-family protein transcriptional regulator |  |  | -0.794501 | -1.734477348747634 |  | MSMEG_1131 | tryptophan-rich sensory protein | 0.73362 | 1.662806162690826
MSMEG_0094 | hypothetical protein |  |  | -0.7940269 | -1.733907456575415 |  | MSMEG_2378 | D-3-phosphoglycerate dehydrogenase | 0.7309592 | 1.659742232333772
MSMEG_3949 | hypothetical protein |  |  | -0.7937651 | -1.733592839989989 |  | MSMEG_3952 | conserved hypothetical protein | 0.72935605 | 1.657898919743476
MSMEG_4037 | hypothetical protein |  |  | -0.7931232 | -1.732821682059196 |  | MSMEG_6616 | S-(hydroxymethyl)glutathione dehydrogenase | 0.7293209 | 1.657858526981685
MSMEG_4498 | hypothetical protein |  |  | -0.78520495 | -1.723337120193581 |  | MSMEG_3151 | [NADH] enoyl-[acyl-carrier-protein] reductase | 0.72809905 | 1.656455044720794
MSMEG_6448 | hypothetical protein |  |  | -0.7806569 | -1.717912909327284 |  | MSMEG_1654 | isocitrate dehydrogenase, NADP-dependent | 0.72464824 | 1.652497672802451
MSMEG_4429 | hypothetical protein |  |  | -0.77800053 | -1.714752703213509 |  | MSMEG_6249 | conserved hypothetical protein | 0.7240815 | 1.651848642635419
MSMEG_6194 | beta-lactamase related protein |  |  | -0.77710444 | -1.713687962845445 |  | MSMEG_2351 | electron transfer flavoprotein, beta subunit | 0.72215796 | 1.649647706482378
MSMEG_6415 | conserved hypothetical protein |  |  | -0.77128494 | -1.706789262960574 |  | MSMEG_4690 | aminopeptidase N | 0.72165525 | 1.649072983545684
MSMEG_3428 | conserved hypothetical protein |  |  | -0.7694308 | -1.704597120165831 |  | MSMEG_2412 | pyruvate carboxylase | 0.7193775 | 1.646471454957589
MSMEG_1755 | anti-sigm factor, ChrR |  |  | -0.76654106 | -1.701186203536748 |  | MSMEG_5685 | DNA-binding protein | 0.7192527 | 1.646329033486295
MSMEG_4813 | conserved domain protein |  |  | -0.76522875 | -1.699639467358291 |  | MSMEG_5223 | conserved hypothetical protein | 0.71865076 | 1.645642273941179
MSMEG_6315 | [NAME] |  |  | -0.75870067 | -1.691966108082717 |  | MSMEG_6507 | glycogen debranching enzyme GlgX | 0.71858746 | 1.645570070968445
MSMEG_5217 | hypothetical protein |  |  | -0.75418127 | -1.686674132376454 |  | MSMEG_1528 | cutinase | 0.71798617 | 1.644884369116854
MSMEG_4953 | putative transcriptional regulator |  |  | -0.754164 | -1.686653941908548 |  | MSMEG_2593 | gnat-family protein acetyltransferase | 0.71743536 | 1.644256484636661
MSMEG_2443 | conserved hypothetical protein |  |  | -0.7511974 | -1.683189254978182 |  | MSMEG_4283 | 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase | 0.717388 | 1.6442025087743
MSMEG_3983 | L-carnitine dehydratase/bile acid-inducible protein F; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF02515 |  |  | -0.7400216 | -1.670200844881686 |  | MSMEG_4258 | anthranilate phosphoribosyltransferase | 0.7164618 | 1.643147281167434
MSMEG_1723 | hypothetical protein |  |  | -0.73767215 | -1.667483111883058 |  | MSMEG_0255 | phosphoenolpyruvate carboxykinase | 0.7147922 | 1.641246801996917
MSMEG_0820 | conserved hypothetical protein |  |  | -0.7345768 | -1.663909306860033 |  | MSMEG_5016 | conserved domain protein | 0.71356964 | 1.639856575583311
MSMEG_2135 | putative CrcB protein |  |  | -0.7228673 | -1.650458999783289 |  | MSMEG_6919 | proline-rich 28 kDa antigen | 0.7118402 | 1.637891964700201
MSMEG_2666 | multimeric flavodoxin WrbA |  |  | -0.72083694 | -1.648137879288597 |  | MSMEG_0436 | allophanate hydrolase subunit 1 | 0.70534647 | 1.630536198726606
MSMEG_5585 | hypothetical protein |  |  | -0.716875 | -1.643617959775797 |  | MSMEG_4756 | holo-(acyl-carrier-protein) synthase | 0.705286 | 1.630467856870003
MSMEG_3760 | conserved hypothetical protein |  |  | -0.7047854 | -1.62990219982269 |  | MSMEG_6257 | [NAME], monofunctional class | 0.7038775 | 1.628876811475582
MSMEG_2262 | [NAME], small subunit |  |  | -0.703034 | -1.627924734997763 |  | MSMEG_5243 | helix-turn-helix motif | 0.70361435 | 1.628579728702759
MSMEG_0527 | 2-hydroxycyclohexnecarboxyl-CoA dehydrogenase |  |  | -0.69141513 | -1.614866753916467 |  | MSMEG_3507 | fructose-bisphosphate aldolase class-I | 0.701927 | 1.626676084788044
MSMEG_4802 | conserved domain protein |  |  | -0.69037765 | -1.613705878161355 |  | MSMEG_3103 | transketolase | 0.70034814 | 1.624896852937039
MSMEG_6417 | conserved hypothetical protein |  |  | -0.6878919 | -1.610927872022032 |  | MSMEG_5524 | succinyl-CoA synthetase, alpha subunit | 0.70015997 | 1.624684932265544
MSMEG_4819 | conserved domain protein |  |  | -0.6848336 | -1.607516560330202 |  | MSMEG_3085 | phosphoglycerate kinase | 0.6998771 | 1.624366410636102
MSMEG_5337 | putative regulatory protein, FmdB family; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM TIGR02605 |  |  | -0.6751398 | -1.596751493591457 |  | MSMEG_4936 | ATP synthase F1, beta subunit | 0.69865286 | 1.622988592892822
MSMEG_2035 | amine oxidase [flavin-containing] B |  |  | -0.673504 | -1.594942042675185 |  | MSMEG_2696 | putative conserved membrane alanine rich protein | 0.6948464 | 1.618712083842051
MSMEG_0869 | hypothetical protein |  |  | -0.6721567 | -1.593453257951254 |  | MSMEG_4692 | conserved hypothetical protein | 0.69379777 | 1.617535942480831
MSMEG_3732 | hypothetical protein |  |  | -0.6692546 | -1.590251117135111 |  | MSMEG_3580 | antigen 85-C | 0.69328266 | 1.616958509145283
MSMEG_3670 | transporter, small multidrug resistance (SMR) family protein |  |  | -0.6636272 | -1.584060239446783 |  | MSMEG_2337 | isopentenyl-diphosphate delta-isomerase, type 2 | 0.6928799 | 1.616507162676136
MSMEG_6380 | hypothetical protein |  |  | -0.66120327 | -1.581401030634814 |  | MSMEG_0699 | conserved hypothetical proline rich protein | 0.69250387 | 1.616085884470352
MSMEG_4359 | hypothetical protein |  |  | -0.65470034 | -1.574288926010029 |  | MSMEG_2198 | ThiF family protein | 0.6922496 | 1.615801080033847
MSMEG_4448 | transcriptional modulator of MazE |  |  | -0.64908534 | -1.568173667867791 |  | MSMEG_1789 | conserved hypothetical protein | 0.6897768 | 1.613033945930241
MSMEG_2998 | conserved hypothetical protein |  |  | -0.6403511 | -1.558708446650282 |  | MSMEG_3289 | gp61 protein | 0.6847729 | 1.607448927046825
MSMEG_2806 | two-component system response regulator |  |  | -0.63014656 | -1.547722215020263 |  | [NAME] | Ppx/GppA phosphatase family protein | 0.68421507 | 1.606827513735693
MSMEG_4507 | conserved hypothetical protein |  |  | -0.6286535 | -1.546121289862765 |  | MSMEG_2824 | IS1549, transposase | 0.68381125 | 1.60637781489756
MSMEG_6557 | dehydrogenase |  |  | -0.6206104 | -1.537525566204813 |  | MSMEG_1512 | dTDP-glucose 4,6-dehydratase | 0.6821741 | 1.604555953899052
MSMEG_2722 | hydrogenase nickel insertion protein HypA |  |  | -0.6170384 | -1.53372348202033 |  | MSMEG_4221 | conserved hypothetical protein | 0.6805166 | 1.602713551842362
MSMEG_6574 | conserved hypothetical protein |  |  | -0.616827 | -1.533498759968053 |  | MSMEG_2332 | amino acid carrier protein | 0.68013835 | 1.602293402802097
MSMEG_4396 | isochorismatase hydrolase |  |  | -0.6122727 | -1.528665443689831 |  | MSMEG_0791 | glycine oxidase ThiO | 0.67988056 | 1.602007120321653
MSMEG_3665 | TrkA domain protein |  |  | -0.6085061 | -1.52467959686459 |  | MSMEG_0792 | thiamine biosynthesis protein ThiS | 0.6762279 | 1.597956239300307
MSMEG_5546 | membrane spanning protein |  |  | -0.6072797 | -1.523384054518147 |  | MSMEG_6201 | Transglycosylase | 0.67430186 | 1.595824344455047
MSMEG_6322 | bifunctional wax ester synthase/acyl-CoA diacylglycerol acyltransferase |  |  | -0.599508 | -1.515199752224599 |  | MSMEG_5791 | conserved hypothetical protein | 0.6737513 | 1.595215463573921
MSMEG_5252 | pantothenate kinase |  |  | -0.5951913 | -1.510672886080779 |  | MSMEG_3644 | transcriptional regulator, MerR family protein | 0.6734511 | 1.594883561232591
MSMEG_0212 | lyase |  |  | -0.5937723 | -1.509187755203128 |  | MSMEG_1762 | piperideine-6-carboxylic acid dehydrogenase | 0.67290276 | 1.594277492555005
MSMEG_3568 | conserved hypothetical protein |  |  | -0.58823574 | -1.503407118502138 |  | [NAME] | transcriptional repressor, CopY family protein | 0.6708508 | 1.592011547095191
MSMEG_6066 | 30S ribosomal protein S14 |  |  | -0.5878279 | -1.502982175680951 |  | MSMEG_5268 | conserved hypothetical protein | 0.6686044 | 1.589534577407379
MSMEG_2800 | NADPH-dependent fmn reductase |  |  | -0.5808404 | -1.495720283223772 |  | MSMEG_4325 | malonyl CoA-acyl carrier protein transacylase | 0.6678898 | 1.58874743937114
MSMEG_2763 | conserved hypothetical protein |  |  | -0.5688214 | -1.483311294341207 |  | MSMEG_0969 | glutamate-1-semialdehyde-2,1-aminomutase | 0.6676638 | 1.588498579571092
MSMEG_4605 | ankyrin; this gene contains a premature stop which is not the result of sequencing error |  |  | -0.5639159 | -1.478276254602278 |  | MSMEG_0584 | hypothetical protein | 0.6651689 | 1.585753910621772
MSMEG_4345 | conserved hypothetical protein |  |  | -0.5637809 | -1.478137931566733 |  | MSMEG_3226 | glutamate synthase, NADH/nadph, small subunit | 0.66505164 | 1.585625028257992
MSMEG_5469 | acetyltransferase, GNAT family protein |  |  | -0.56177425 | -1.476083413065775 |  | MSMEG_0403 | integral membrane protein | 0.6636809 | 1.584119202440066
MSMEG_4266 | hypothetical protein |  |  | -0.5600853 | -1.474356386705572 |  | MSMEG_2625 | transcription termination factor [NAME] | 0.6618607 | 1.582121832585687
MSMEG_3817 | conserved hypothetical protein |  |  | -0.55544746 | -1.469624374883992 |  | MSMEG_4920 | acetyl-CoA acetyltransferase | 0.6604005 | 1.580521324157934
MSMEG_6581 | oxidoreductase, short chain dehydrogenase/reductase family protein |  |  | -0.55389583 | -1.468044631836316 |  | MSMEG_5556 | MFS permease | 0.6599946 | 1.580076709496818
MSMEG_4836 | FadE12_1 |  |  | -0.549975 | -1.464060325493638 |  | [NAME] | Fe-S metabolism associated SufE | 0.65874857 | 1.578712614554634
MSMEG_3438 | hypothetical protein |  |  | -0.52904207 | -1.44297076428841 |  | MSMEG_6746 | oxidoreductase, aldo/keto reductase family protein | 0.65873545 | 1.578698257663722
MSMEG_3725 | coenzyme PQQ biosynthesis protein A |  |  | -0.5264406 | -1.440371141629796 |  | MSMEG_4999 | bacterial extracellular solute-binding protein, family protein 5 | 0.6578208 | 1.577697700586623
MSMEG_3642 | glycine dehydrogenase |  |  | -0.52479947 | -1.438733586741396 |  | MSMEG_4757 | fatty acid synthase | 0.6547491 | 1.574342134500439
MSMEG_2020 | [NAME] family protein, authentic frameshift; this gene contains a frame shift which is not the result of sequencing error; identified by similarity to RF:NP_457306.1 |  |  | -0.5236999 | -1.437637453788037 |  | MSMEG_0702 | monooxygenase | 0.6541538 | 1.573692646900612
MSMEG_4827 | aminoglycoside phosphotransferase |  |  | -0.49688506 | -1.411163411065563 |  | MSMEG_3101 | glucose-6-phosphate 1-dehydrogenase | 0.6516616 | 1.570976500286954
MSMEG_0621 | low molecular weight protein antigen 7 |  |  | -0.49006748 | -1.404510568177476 |  | MSMEG_3764 | conserved hypothetical protein | 0.6515751 | 1.570882311709516
MSMEG_3857 | conserved hypothetical protein |  |  | -0.4844936 | -1.399094683545156 |  | MSMEG_5708 | hypothetical protein | 0.65143925 | 1.570734398041829
MSMEG_2143 | hypothetical protein |  |  | -0.48430124 | -1.398908149382048 |  | MSMEG_3896 | conserved hypothetical protein | 0.65093327 | 1.570183608848065
MSMEG_6065 | ribosomal protein S18 |  |  | -0.48086867 | -1.395583716931473 |  | MSMEG_4753 | antioxidant, [NAME]/TSA family protein | 0.6495465 | 1.568675017455336
MSMEG_4616 | acyl-CoA dehydrogenase family protein; this gene contains a frame shift which is not the result of sequencing error |  |  | -0.4769764 | -1.391823623813431 |  | MSMEG_6366 | O-antigen export system, ATP-binding protein | 0.64784384 | 1.566824768686575
MSMEG_6913 | putative transcriptional regulatory protein |  |  | -0.46188697 | -1.377342132322655 |  | MSMEG_3084 | glyceraldehyde-3-phosphate dehydrogenase, type I | 0.64732 | 1.566255960676316
MSMEG_2434 | conserved hypothetical protein |  |  | -0.4529144 | -1.36880259497234 |  | MSMEG_2926 | glycine betaine/carnitine/choline transport ATP-binding protein opuCA | 0.64723396 | 1.566162554488131
MSMEG_4238 | conserved hypothetical protein |  |  | -0.44981357 | -1.365863743753494 |  | MSMEG_3152 | ferrochelatase | 0.6445057 | 1.563203605530324
MSMEG_6271 | 2-isopropylmalate synthase |  |  | -0.4448264 | -1.361150318949739 |  | MSMEG_3688 | conserved hypothetical protein | 0.6436185 | 1.562242593084369
MSMEG_5635 | conserved hypothetical protein |  |  | -0.44272375 | -1.359167960912679 |  | MSMEG_0234 | metallopeptidase | 0.6408839 | 1.559284197732445
MSMEG_4447 | conserved hypothetical protein |  |  | -0.4398876 | -1.356498638870177 |  | MSMEG_4323 | pyruvate dehydrogenase E1 component | 0.6383453 | 1.556542857290847
MSMEG_3888 | conserved hypothetical protein |  |  | -0.41430217 | -1.332653917938921 |  | MSMEG_3625 | urease, alpha subunit | 0.63666797 | 1.554734215257588
[NAME] | acetaldehyde dehydrogenase |  |  | -0.41092724 | -1.329540053280317 |  | MSMEG_2776 | 1-deoxy-D-xylulose-5-phosphate synthase | 0.63518816 | 1.553140301348258
MSMEG_2266 | hypothetical protein |  |  | -0.4100554 | -1.32873683708151 |  | MSMEG_3811 | universal stress protein family protein, putative | 0.634185 | 1.552060719994341
MSMEG_3413 | MerR-family transcriptional regulator; this gene contains a frame shift which is not the result of sequencing error; identified by match to protein family HMM PF00376 |  |  | -0.388509 | -1.309039834843226 |  | MSMEG_0711 | chaperone protein DnaJ | 0.6327432 | 1.550510396974801
MSMEG_2595 | gamma-glutamylisopropylamide synthetase |  |  | -0.3744986 | -1.29638892416108 |  | MSMEG_6544 | transport-associated, putative | 0.6320091 | 1.549721636972682
MSMEG_2174 | superfamily protein I DNA or RNA helicase |  |  | -0.35954985 | -1.283025505221887 |  | MSMEG_4937 | ATP synthase F1, gamma subunit | 0.6304293 | 1.548025568016068
MSMEG_6053 | cob(II)yrinic acid a,c-diamide reductase |  |  | -0.356299 | -1.280137696179959 |  | MSMEG_5122 | ferredoxin | 0.6284478 | 1.545900859024326
MSMEG_4355 | peptide ABC transporter, permease protein |  |  | -0.3560147 | -1.279885454868087 |  | MSMEG_4290 | glutamine synthetase, type I | 0.6244497 | 1.541622678395416
MSMEG_1164 | putative transporter; this region contains one or more premature stops and/or frameshifts which are not the result of sequencing error |  |  | -0.3525946 | -1.276854910165484 |  | MSMEG_4671 | ATP-dependent [NAME] protease, ATP-binding subunit ClpX | 0.6241744 | 1.541328528751625
MSMEG_0063 | PE family protein |  |  | -0.3515056 | -1.275891456149863 |  | MSMEG_2684 | dihydrodipicolinate synthase | 0.62333083 | 1.540427549394556
MSMEG_2759 | hypothetical protein |  |  | -0.33501592 | -1.261391328085546 |  | MSMEG_2726 | glutamate permease | 0.619252 | 1.536078557857473
MSMEG_0895 | bacterial regulatory protein, GntR family protein |  |  | -0.331161 | -1.258025355475941 |  | MSMEG_5770 | hypothetical protein | 0.6104442 | 1.526729210383841
MSMEG_4368 | putative regulatory protein, FmdB family protein |  |  | -0.30026457 | -1.231370208635413 |  | MSMEG_4921 | methylmalonyl-CoA epimerase | 0.6096787 | 1.525919336383621
MSMEG_5115 | hypothetical protein |  |  | -0.2999609 | -1.231111047253755 |  | MSMEG_0933 | conserved hypothetical protein | 0.60948515 | 1.525714634857135
MSMEG_6603 | NADH:flavin oxidoreductase/nadh oxidase |  |  | -0.25666142 | -1.194710790328803 |  | MSMEG_5890 | conserved hypothetical protein | 0.6076347 | 1.523758955565307
MSMEG_1981 | conserved hypothetical protein |  |  | -0.25439185 | -1.192832813325536 |  | MSMEG_6934 | thioredoxin | 0.605895 | 1.521922610589963
MSMEG_4613 | hypothetical protein |  |  | -0.25417778 | -1.192655831517603 |  | MSMEG_4237 | probable conserved transmembrane protein | 0.6045817 | 1.520537819316192
MSMEG_2917 | hypothetical protein |  |  | -0.25241086 | -1.191196037556085 |  | MSMEG_3100 | OpcA protein | 0.6037711 | 1.51968372214152
MSMEG_0138 | virulence factor [NAME] family protein |  |  | -0.22212657 | -1.166451700018643 |  | MSMEG_3810 | hydrolase | 0.60125405 | 1.517034662619288
MSMEG_4677 | hypothetical protein |  |  | -0.20090319 | -1.149417715404816 |  | MSMEG_2752 | sigma factor SigB | 0.59904313 | 1.514711598166621
MSMEG_5329 | conserved hypothetical protein |  |  | -0.1955363 | -1.145149773545958 |  | MSMEG_3254 | RDD family protein, putative | 0.596621 | 1.512170693652639
MSMEG_4580 | conserved domain protein |  |  | -0.18967637 | -1.140507844776075 |  | MSMEG_3808 | excinuclease ABC, A subunit | 0.5963472 | 1.511883735537182
MSMEG_6428 | conserved hypothetical protein |  |  | -0.18926354 | -1.140181532921288 |  | MSMEG_1477 | major facilitator superfamily protein | 0.59048724 | 1.505755198792941
MSMEG_3736 | hypothetical protein |  |  | -0.09596926 | -1.06878321803635 |  | [NAME] | putative thiosulfate sulfurtransferase | 0.59040374 | 1.50566805153236
MSMEG_2653 | riboflavin biosynthesis protein RibF |  |  | -0.06764565 | -1.048005036360334 |  | MSMEG_6512 | acyl-CoA dehydrogenase domain protein | 0.59030586 | 1.50556590257816
MSMEG_6330 | prephenate dehydrogenase |  |  | -0.060154494 | -1.042577401433511 |  | MSMEG_0986 | RemM protein | 0.58549166 | 1.500550278804205
MSMEG_2436 | conserved hypothetical protein |  |  | -0.051233634 | -1.036150547041319 |  | MSMEG_1951 | conserved domain protein | 0.5846266 | 1.499650797696999
MSMEG_1638 | Roadblock/LC7 domain protein |  |  | -0.041007165 | -1.028831817470762 |  | [NAME] | hypothetical protein | 0.5845891 | 1.499611817751521
MSMEG_1775 | cytochrome P450 monooxygenase |  |  | -0.030410768 | -1.021302872406149 |  | MSMEG_3793 | translation initiation factor IF-3 | 0.58453524 | 1.499555833927801
 |  |  |  |  |  |  | MSMEG_2372 | acetolactate synthase, large subunit, biosynthetic type | 0.5835024 | 1.498482670899818
 |  |  |  |  |  |  | MSMEG_6565 | conserved hypothetical protein | 0.58230615 | 1.497240678049877
 |  |  |  |  |  |  | MSMEG_1679 | AmiB | 0.5818384 | 1.496755321970785
 |  |  |  |  |  |  | MSMEG_1368 | DNA-directed [NAME] polymerase, beta' subunit | 0.5815641 | 1.496470770526638
 |  |  |  |  |  |  | MSMEG_4244 | 3-deoxy-7-phosphoheptulonate synthase | 0.5790803 | 1.493896604662968
 |  |  |  |  |  |  | MSMEG_5189 | oxidoreductase | 0.577887 | 1.492661465066443
 |  |  |  |  |  |  | MSMEG_4941 | ATP synthase F0, C subunit | 0.5769129 | 1.491653968169772
 |  |  |  |  |  |  | [NAME] | ErfK/YbiS/YcfS/YnhG family protein | 0.57414794 | 1.488797914921274
 |  |  |  |  |  |  | MSMEG_2775 | Na+/H+ antiporter NhaA | 0.57235354 | 1.486947324042021
 |  |  |  |  |  |  | MSMEG_3087 | preprotein translocase, SecG subunit | 0.57231927 | 1.486912003285987
 |  |  |  |  |  |  | MSMEG_6726 | ABC transporter, permease protein | 0.57085896 | 1.485407697909854
 |  |  |  |  |  |  | MSMEG_4475 | LppP protein | 0.57025015 | 1.484780995626826
 |  |  |  |  |  |  | MSMEG_2511 | siderophore utilization protein | 0.56930375 | 1.483807306874487
 |  |  |  |  |  |  | MSMEG_3150 | 3-oxoacyl-(acyl-carrier-protein) reductase | 0.5687864 | 1.483275309421254
 |  |  |  |  |  |  | [NAME] | NAD(P) transhydrogenase, alpha subunit | 0.56824666 | 1.482720491351785
 |  |  |  |  |  |  | [NAME] | molybdopterin biosynthesis protein MoeB | 0.55991083 | 1.474178098572446
 |  |  |  |  |  |  | MSMEG_0435 | allophanate hydrolase subunit 2 | 0.55908495 | 1.473334437397445
 |  |  |  |  |  |  | MSMEG_1790 | conserved hypothetical protein | 0.5589773 | 1.473224505270058
 |  |  |  |  |  |  | MSMEG_5796 | Glycine cleavage T-protein (aminomethyl transferase) | 0.5550232 | 1.469192259190498
 |  |  |  |  |  |  | MSMEG_5037 | oxidoreductase, FAD-binding | 0.5549209 | 1.469088083993917
 |  |  |  |  |  |  | MSMEG_2925 | permease membrane component | 0.55109406 | 1.465196398527898
 |  |  |  |  |  |  | MSMEG_0360 | conserved hypothetical protein | 0.55106634 | 1.465168246456374
 |  |  |  |  |  |  | MSMEG_2656 | guanosine pentaphosphate synthetase I/polyribonucleotide nucleotidyltransferase | 0.550263 | 1.464352619742084
 |  |  |  |  |  |  | MSMEG_2616 | cob(I)alamin adenosyltransferase | 0.5489697 | 1.463040493079149
 |  |  |  |  |  |  | MSMEG_6189 | transcriptional regulator, Crp/Fnr family protein | 0.5437108 | 1.457717138224491
 |  |  |  |  |  |  | MSMEG_1680 | conserved hypothetical protein | 0.54299855 | 1.456997649522247
 |  |  |  |  |  |  | MSMEG_1350 | cyclopropane-fatty-acyl-phospholipid synthase 1 | 0.54262114 | 1.456616547800547
 |  |  |  |  |  |  | MSMEG_5715 | conserved hypothetical protein | 0.5403551 | 1.454330437166381
 |  |  |  |  |  |  | MSMEG_1672 | succinate dehydrogenase, cytochrome b556 subunit | 0.5391951 | 1.453161551702096
 |  |  |  |  |  |  | MSMEG_5512 | magnesium chelatase | 0.5377027 | 1.451659101830889
 |  |  |  |  |  |  | MSMEG_2327 | nudix hydrolase | 0.5376431 | 1.451599132750157
 |  |  |  |  |  |  | MSMEG_5704 | conserved hypothetical protein | 0.53687185 | 1.450823330100353
 |  |  |  |  |  |  | MSMEG_1556 | ribosomal protein [NAME] | 0.5363162 | 1.450264657104856
 |  |  |  |  |  |  | [NAME] | 3-ketoacyl-CoA thiolase | 0.5361095 | 1.450056887463579
 |  |  |  |  |  |  | MSMEG_5183 | 3-Hydroxyacyl-CoA dehydrogenase | 0.5312923 | 1.445223180481216
 |  |  |  |  |  |  | MSMEG_5071 | conserved hypothetical protein | 0.5292746 | 1.443203357472714
 |  |  |  |  |  |  | MSMEG_5541 | glucose-6-phosphate isomerase | 0.5280565 | 1.441985342560649
 |  |  |  |  |  |  | MSMEG_4905 | cysteine synthase B | 0.52788407 | 1.441813007682228
 |  |  |  |  |  |  | MSMEG_2744 | thymidylate synthase | 0.5277329 | 1.441661938019275
 |  |  |  |  |  |  | MSMEG_4940 | bacteriophage lysis protein | 0.5262152 | 1.440146122283516
 |  |  |  |  |  |  | MSMEG_1677 | aspartate ammonia-lyase | 0.5260727 | 1.440003881074004
 |  |  |  |  |  |  | MSMEG_2671 | dihydrofolate reductase | 0.526071 | 1.440002184246133
 |  |  |  |  |  |  | [NAME] | cytochrome P450 107B1 | 0.5245179 | 1.43845281729593
 |  |  |  |  |  |  | MSMEG_4902 | metal-dependent hydrolase of the beta-lactamase superfamily protein III | 0.52448875 | 1.4384237533047
 |  |  |  |  |  |  | MSMEG_4254 | AMP-binding enzyme | 0.52424276 | 1.438178512498572
 |  |  |  |  |  |  | MSMEG_1601 | conserved hypothetical protein | 0.5241566 | 1.438092624797397
 |  |  |  |  |  |  | MSMEG_6190 | metallo-beta-lactamase family protein | 0.5226425 | 1.43658414671406
 |  |  |  |  |  |  | MSMEG_1133 | bifunctional short chain isoprenyl diphosphate synthase | 0.5210889 | 1.435037960046925
 |  |  |  |  |  |  | MSMEG_2383 | glutamyl-tRNA synthetase | 0.5195218 | 1.433480023697619
 |  |  |  |  |  |  | MSMEG_4463 | CalR5 protein | 0.5174387 | 1.431411722777774
 |  |  |  |  |  |  | MSMEG_5800 | amidophosphoribosyltransferase | 0.51658255 | 1.430562520726329
 |  |  |  |  |  |  | MSMEG_6202 | secreted protein | 0.51603425 | 1.430018935024272
 |  |  |  |  |  |  | MSMEG_4367 | formamidase | 0.5159836 | 1.429968730937074
 |  |  |  |  |  |  | MSMEG_2365 | glutamyl-tRNA(Gln) amidotransferase subunit A | 0.5146136 | 1.428611460530986
 |  |  |  |  |  |  | MSMEG_3641 | conserved hypothetical protein | 0.5133293 | 1.427340263759207
 |  |  |  |  |  |  | MSMEG_5892 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) | 0.51181877 | 1.42584659259993
 |  |  |  |  |  |  | MSMEG_0380 | MmpS4 protein | 0.50817424 | 1.422249170886197
 |  |  |  |  |  |  | MSMEG_3223 | TM2 domain protein | 0.5072667 | 1.42135477388413
 |  |  |  |  |  |  | MSMEG_1777 | UsfY protein | 0.50615406 | 1.420259014586675
 |  |  |  |  |  |  | MSMEG_1812 | conserved hypothetical protein | 0.5037064 | 1.417851462184264
 |  |  |  |  |  |  | MSMEG_3858 | conserved hypothetical protein | 0.50191396 | 1.416090982319208
 |  |  |  |  |  |  | MSMEG_0381 | Mmp14a protein | 0.5006953 | 1.414895300127184
 |  |  |  |  |  |  | MSMEG_3155 | band 7 protein | 0.5004744 | 1.414678673303152