Spreadsheet: 96ae58e1-9b8c-4124-9238-4c900b73db72
Sheet: Sheet1

Table S1.  Signal peptide and subcellular localization predictions for classically secreted, membrane and surface-exposed proteins. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11 | Unnamed: 12 | Unnamed: 13 | Unnamed: 14
Locus Tag | Sequence name | Description | SignalP |  |  |  | LipoP |  | Phobius |  | SecretomeP |  | Final Localization
 |  |  | NN |  | HMM
 |  |  | D | ? | Sprob | ? | Type | Score | TM | SP | Score | ? | SosuiGramN | pSORTb
RT0011 | gi_51473225_ref_YP_066982.1_ | hypothetical protein | 0.591 | Y | 0.995 | Y | SpI | 2.69935 | 0 | Y | 0.178054 | N | Periplasmic | Unknown
RT0013 | gi_51473227_ref_YP_066984.1_ | zinc/manganese ABC transporter substrate binding protein | 0.467 | Y | 1 | Y | SpI | 11.5921 | 0 | Y | 0.304647 | N | [NAME] | [NAME]
RT0015 | gi_51473229_ref_YP_066986.1_ | 190 kDa antigen precursor | 0.488 | Y | 0.998 | Y | SpI | 7.12401 | 1 | N | 0.949527 | Y | [NAME] | [NAME]
RT0028 | gi_51473241_ref_YP_066998.1_ | VirB6-like protein of the type IV secretionsystem | 0.538 | Y | 0.963 | Y | SpII | 11.4024 | 6 | Y | 0.097636 | N | [NAME] | [NAME]
RT0029 | gi_51473242_ref_YP_066999.1_ | VirB6-like protein of the type IV secretionsystem | 0.891 | Y | 1 | Y | SpI | 13.4277 | 5 | Y | 0.07776 | N | [NAME] | [NAME]
RT0030 | gi_51473243_ref_YP_067000.1_ | VirB6-like protein of the type IV secretionsystem | 0.627 | Y | 0.996 | Y | SpI | 8.24932 | 6 | Y | 0.446297 | N | [NAME] | [NAME]
RT0031 | gi_51473244_ref_YP_067001.1_ | VirB6-like protein of the type IV secretionsystem | 0.516 | Y | 0.501 | Y | SpI | 0.553791 | 6 | N | 0.122781 | N | [NAME] | [NAME]
RT0032 | gi_51473245_ref_YP_067002.1_ | VirB6-like protein of the type IV secretionsystem | 0.521 | Y | 0.824 | Y | CYT | -0.200913 | 8 | Y | 0.347779 | N | [NAME] | [NAME]
RT0039 | gi_51473251_ref_YP_067008.1_ | hypothetical protein | 0.126 | N | 0.575 | Y | TMH | 0.0882308 | 2 | Y | 0.054037 | N | Unknown | [NAME]
RT0043 | gi_51473255_ref_YP_067012.1_ | hypothetical protein | 0.408 | N | 0.992 | Y | SpI | 2.71394 | 0 | Y | 0.093144 | N | Cytoplasmic | Unknown
RT0044 | gi_51473256_ref_YP_067013.1_ | lipoprotein precursor | 0.467 | Y | 0.998 | Y | SpI | 2.48339 | 0 | Y | 0.406456 | N | Periplasmic | Unknown
RT0050 | gi_51473262_ref_YP_067019.1_ | 30S ribosomal protein S2 | 0.059 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.187526 | N | Extracellular | Cytoplasmic
RT0052 | gi_51473264_ref_YP_067021.1_ | 190 kDa antigen precursor | 0.621 | Y | 0.882 | Y | SpI | 4.85613 | 0 | Y | 0.812166 | Y | Extracellular | Unknown
RT0053 | gi_51473265_ref_YP_067022.1_ | preprotein translocase subunit SecG | 0.266 | N | 0.02 | N | TMH | 4.13936 | 1 | Y | 0.045208 | N | [NAME] | [NAME]
RT0055 | gi_51473266_ref_YP_067023.1_ | proline/betaine transporter ProP1 | 0.446 | Y | 0.003 | N | TMH | 5.63895 | 12 | N | 0.343359 | N | [NAME] | [NAME]
RT0056 | gi_51473267_ref_YP_067024.1_ | hypothetical protein | 0.304 | N | 0.087 | N | TMH | 2.26863 | 9 | Y | 0.186314 | N | [NAME] | [NAME]
RT0057 | gi_51473268_ref_YP_067025.1_ | OmpW-like outer membrane protein | 0.804 | Y | 0.999 | Y | SpI | 11.0268 | 0 | Y | 0.638362 | Y | [NAME] | Unknown
RT0064 | gi_51473275_ref_YP_067032.1_ | hypothetical protein | 0.659 | Y | 1 | Y | SpI | 10.2551 | 0 | Y | 0.881806 | Y | Extracellular | Unknown
RT0080 | gi_51473291_ref_YP_067048.1_ | hypothetical protein | 0.423 | N | 0.999 | Y | SpII | 10.4171 | 0 | Y | 0.946079 | Y | [NAME] | Unknown
RT0087 | gi_51473298_ref_YP_067055.1_ | cell division protein FtsH | 0.468 | Y | 0.728 | Y | TMH | 0.924398 | 2 | N | 0.057099 | N | [NAME] | [NAME]
RT0103 | gi_51473314_ref_YP_067071.1_ | hypothetical protein | 0.551 | Y | 0.996 | Y | SpII | 9.08272 | 0 | Y | 0.762292 | Y | [NAME] | Unknown
RT0112 | gi_51473323_ref_YP_067080.1_ | protease activity modulator protein HflC | 0.404 | N | 0.963 | Y | CYT | -0.200913 | 1 | N | 0.072825 | N | [NAME] | Cytoplasmic
RT0113 | gi_51473324_ref_YP_067081.1_ | serine protease | 0.373 | N | 0.696 | Y | CYT | -0.200913 | 0 | Y | 0.03723 | N | Cytoplasmic | Unknown
RT0117 | gi_51473328_ref_YP_067085.1_ | succinate dehydrogenase flavoprotein subunit | 0.275 | N | 0.46 | N | SpI | 0.209758 | 0 | N | 0.068336 | N | Extracellular | [NAME]
RT0139 | gi_51473349_ref_YP_067106.1_ | glutamine-binding periplasmic protein GlnH | 0.18 | N | 0.106 | N | CYT | -0.200913 | 0 | Y | 0.072767 | N | Cytoplasmic | Periplasmic
RT0146 | gi_51473356_ref_YP_067113.1_ | multidrug resistance protein B | 0.292 | N | 0.793 | Y | TMH | 5.68924 | 14 | N | 0.349611 | N | [NAME] | [NAME]
RT0150 | gi_51473359_ref_YP_067116.1_ | outer membrane protein Omp1 | 0.43 | N | 0.991 | Y | SpI | 0.855085 | 0 | Y | 0.181442 | N | [NAME] | [NAME]
RT0151 | gi_51473360_ref_YP_067117.1_ | membrane associated zinc metalloprotease | 0.078 | N | 0.001 | N | CYT | -0.200913 | 3 | Y | 0.155568 | N | [NAME] | [NAME]
RT0157 | gi_51473366_ref_YP_067123.1_ | hypothetical protein | 0.12 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.282918 | N | Extracellular | Cytoplasmic
RT0165 | gi_51473374_ref_YP_067131.1_ | post-proline cleaving enzyme | 0.19 | N | 0.437 | N | CYT | -0.200913 | 0 | Y | 0.178518 | N | Cytoplasmic | Periplasmic
RT0174 | gi_51473383_ref_YP_067140.1_ | [NAME] | 0.365 | N | 0.787 | Y | SpII | 17.5699 | 0 | Y | 0.106176 | N | Periplasmic | [NAME]
RT0177 | gi_51473386_ref_YP_067143.1_ | serine protease | 0.385 | N | 0.688 | Y | SpI | 0.647565 | 0 | Y | 0.308024 | N | Extracellular | Periplasmic
RT0178 | gi_51473387_ref_YP_067144.1_ | hypothetical protein | 0.173 | N | 0.38 | N | SpII | -0.0215585 | 0 | Y | 0.076124 | N | Cytoplasmic | Cytoplasmic
RT0187 | gi_51473396_ref_YP_067153.1_ | hypothetical protein | 0.576 | Y | 0.999 | Y | SpI | 5.29931 | 0 | Y | 0.04871 | N | [NAME] | Unknown
RT0188 | gi_51473397_ref_YP_067154.1_ | hypothetical protein | 0.656 | Y | 0.987 | Y | SpI | 3.9314 | 0 | Y | 0.29943 | N | [NAME] | Unknown
RT0216 | gi_51473423_ref_YP_067180.1_ | outer membrane protein TolC precursor | 0.621 | Y | 0.998 | Y | SpI | 5.89993 | 0 | Y | 0.350559 | N | [NAME] | [NAME]
RT0218 | gi_51473425_ref_YP_067182.1_ | hypothetical protein | 0.66 | Y | 0.898 | Y | SpI | 2.47731 | 0 | Y | 0.935626 | Y | Periplasmic | Unknown
RT0220 | gi_51473427_ref_YP_067184.1_ | tail specific periplasmic protease precursor | 0.185 | N | 0.283 | N | CYT | -0.200913 | 0 | Y | 0.074036 | N | Cytoplasmic | [NAME]
RT0222 | gi_51473429_ref_YP_067186.1_ | hypothetical protein | 0.197 | N | 0.149 | N | CYT | -0.200913 | 0 | Y | 0.386332 | N | Cytoplasmic | Cytoplasmic
RT0224 | gi_51473431_ref_YP_067188.1_ | hypothetical protein | 0.263 | N | 0.032 | N | SpII | 0.953128 | 0 | Y | 0.049478 | N | Cytoplasmic | [NAME]
RT0242 | gi_51473448_ref_YP_067205.1_ | cell division protein FtsQ | 0.246 | N | 0.992 | Y | SpI | 1.93674 | 1 | N | 0.154346 | N | [NAME] | Cytoplasmic
RT0245 | gi_51473451_ref_YP_067208.1_ | cytochrome c | 0.384 | N | 0.602 | Y | SpI | 1.0551 | 1 | N | 0.393627 | N | [NAME] | [NAME]
RT0248 | gi_51473454_ref_YP_067211.1_ | ribonuclease E | 0.042 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.14927 | N | Extracellular | Cytoplasmic
RT0250 | gi_51473456_ref_YP_067213.1_ | penicillin binding protein 4* | 0.26 | N | 0.936 | Y | TMH | 2.03503 | 0 | Y | 0.055663 | N | [NAME] | [NAME]
RT0251 | gi_51473457_ref_YP_067214.1_ | exonuclease III | 0.092 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.164455 | N | [NAME] | Cytoplasmic
RT0261 | gi_51473467_ref_YP_067224.1_ | complex III (mitochondrial electron transport) | 0.326 | N | 0.925 | Y | TMH | 6.22745 | 1 | N | 0.549496 | Y | Extracellular | [NAME]
RT0263 | [NAME]_ | cytochrome c1 heme protein precursor | 0.787 | Y | 1 | Y | SpI | 5.91843 | 1 | Y | 0.260722 | N | [NAME] | Unknown
RT0264 | gi_51473470_ref_YP_067227.1_ | HSP22-like heat shock protein | 0.482 | Y | 0.942 | Y | CYT | -0.200913 | 0 | Y | 0.043296 | N | [NAME] | Unknown
RT0265 | gi_51473471_ref_YP_067228.1_ | peptide chain release factor 2 | 0.024 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.101047 | N | Extracellular | Cytoplasmic
RT0271 | gi_51473476_ref_YP_067233.1_ | [NAME] determining protein | 0.147 | N | 0.875 | Y | TMH | 11.9324 | 9 | N | 0.350554 | N | [NAME] | [NAME]
RT0274 | gi_51473479_ref_YP_067236.1_ | putative monovalent cation/H+ antiporter subunitD | 0.26 | N | 0.944 | Y | TMH | 1.38885 | 13 | Y | 0.35292 | N | [NAME] | [NAME]
RT0275 | gi_51473480_ref_YP_067237.1_ | putative monovalent cation/H+ antiporter subunitD | 0.234 | N | 0.69 | Y | TMH | 7.88103 | 13 | N | 0.384469 | N | [NAME] | [NAME]
RT0277 | gi_51473482_ref_YP_067239.1_ | VirB9-like conjugal transfer protein precursor | 0.328 | N | 0.628 | Y | CYT | -0.200913 | 0 | Y | 0.043071 | N | Extracellular | [NAME]
RT0279 | gi_51473484_ref_YP_067241.1_ | hypothetical protein | 0.546 | Y | 0.699 | Y | SpII | 6.42353 | 0 | Y | 0.079224 | N | Unknown | Unknown
RT0281 | gi_51473486_ref_YP_067243.1_ | VirB9 protein precursor of the type IV secretionsystem | 0.764 | Y | 0.954 | Y | SpI | 2.73972 | 0 | Y | 0.123713 | N | [NAME] | [NAME]
RT0286 | gi_51473491_ref_YP_067248.1_ | hypothetical protein | 0.363 | N | 0.965 | Y | SpI | 0.495237 | 0 | Y | 0.119188 | N | [NAME] | Unknown
RT0287 | gi_51473492_ref_YP_067249.1_ | hypothetical protein | 0.626 | Y | 0.994 | Y | SpI | 7.23242 | 0 | Y | 0.302148 | N | [NAME] | Unknown
RT0289 | gi_51473494_ref_YP_067251.1_ | DNA mismatch repair protein | 0.057 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.104847 | N | [NAME] | Cytoplasmic
RT0291 | gi_51473496_ref_YP_067253.1_ | outer membrane antigenic lipoprotein Bprecursor | 0.253 | N | 0.714 | Y | SpII | 11.8487 | 0 | Y | 0.042347 | N | [NAME] | Unknown
RT0293 | gi_51473498_ref_YP_067255.1_ | translocation protein TolB | 0.591 | Y | 0.749 | Y | CYT | -0.200913 | 0 | Y | 0.625222 | Y | Cytoplasmic | Periplasmic
RT0312 | gi_51473517_ref_YP_067274.1_ | hypothetical protein | 0.341 | N | 0.833 | Y | TMH | 4.22234 | 1 | N | 0.045494 | N | Cytoplasmic | Cytoplasmic
RT0319 | gi_51473524_ref_YP_067281.1_ | hypothetical protein | 0.12 | N | 0.007 | N | CYT | -0.200913 | 0 | Y | 0.083295 | N | [NAME] | Unknown
RT0322 | gi_51473527_ref_YP_067284.1_ | dTDP-4-keto-L-rhamnose reductase. | 0.312 | N | 0.024 | N | CYT | -0.200913 | 0 | Y | 0.083799 | N | Unknown | Cytoplasmic
RT0331 | gi_51473536_ref_YP_067293.1_ | efflux transporter | 0.51 | Y | 0.838 | Y | SpI | 1.76498 | 0 | Y | 0.052287 | N | Unknown | [NAME]
RT0338 | gi_51473543_ref_YP_067300.1_ | hypothetical protein | 0.314 | N | 0.977 | Y | TMH | 0.29567 | 1 | N | 0.09489 | N | [NAME] | Unknown
RT0340 | gi_51473545_ref_YP_067302.1_ | 3-methyladenine DNA glycosylase | 0.257 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.087786 | N | Extracellular | Unknown
RT0341 | gi_51473546_ref_YP_067303.1_ | hypothetical protein | 0.194 | N | 0.238 | N | CYT | -0.200913 | 0 | Y | 0.052431 | N | Cytoplasmic | Unknown
RT0347 | gi_51473552_ref_YP_067309.1_ | hypothetical protein | 0.19 | N | 0.996 | Y | TMH | 5.19072 | 9 | Y | 0.341647 | N | [NAME] | [NAME]
RT0348 | gi_51473553_ref_YP_067310.1_ | hypothetical protein | 0.157 | N | 0.023 | N | CYT | -0.200913 | 0 | Y | 0.03521 | N | Cytoplasmic | Unknown
RT0354 | gi_51473558_ref_YP_067315.1_ | apolipoprotein N-acyltransferase | 0.645 | Y | 0.968 | Y | TMH | 17.7021 | 7 | N | 0.096211 | N | [NAME] | [NAME]
RT0355 | gi_51473559_ref_YP_067316.1_ | hypothetical protein | 0.529 | Y | 0.987 | Y | SpI | 0.272387 | 0 | Y | 0.078422 | N | Cytoplasmic | Unknown
RT0358 | gi_51473562_ref_YP_067319.1_ | hypothetical protein | 0.222 | N | 0.765 | Y | TMH | 3.3787 | 4 | N | 0.203786 | N | [NAME] | [NAME]
RT0363 | gi_51473567_ref_YP_067324.1_ | proline/betaine transporter ProP3 | 0.295 | N | 0.002 | N | TMH | 3.3535 | 11 | Y | 0.396644 | N | [NAME] | [NAME]
RT0367 | gi_51473571_ref_YP_067328.1_ | CTP synthetase | 0.339 | N | 0.217 | N | CYT | -0.200913 | 0 | Y | 0.086794 | N | [NAME] | Cytoplasmic
RT0377 | gi_51473579_ref_YP_067336.1_ | D-alanyl-D-alanine carboxypeptidase. | 0.641 | Y | 0.738 | Y | SpI | -0.0701768 | 0 | Y | 0.728164 | Y | [NAME] | [NAME]
RT0379 | gi_51473581_ref_YP_067338.1_ | periplasmic protein | 0.522 | Y | 0.999 | Y | SpI | 9.05853 | 0 | Y | 0.075139 | N | Periplasmic | Periplasmic
RT0382 | gi_51473584_ref_YP_067341.1_ | hypothetical protein | 0.251 | N | 0.62 | Y | CYT | -0.200913 | 1 | N | 0.034023 | N | Cytoplasmic | Cytoplasmic
RT0383 | gi_51473585_ref_YP_067342.1_ | hypothetical protein | 0.285 | N | 0.005 | N | CYT | -0.200913 | 0 | Y | 0.259658 | N | [NAME] | Cytoplasmic
RT0384 | gi_51473586_ref_YP_067343.1_ | protocatechuate oxygenase | 0.55 | Y | 0.412 | N | CYT | -0.200913 | 0 | Y | 0.636772 | Y | Extracellular | Cytoplasmic
RT0385 | gi_51473587_ref_YP_067344.1_ | thiol-disulfide interchange protein | 0.497 | Y | 0.424 | N | CYT | -0.200913 | 1 | N | 0.054598 | N | [NAME] | [NAME]
RT0388 | gi_51473590_ref_YP_067347.1_ | soluble lytic transglycosylase domain-containingprotein | 0.76 | Y | 1 | Y | SpI | 8.83972 | 0 | Y | 0.324426 | N | Cytoplasmic | Periplasmic
RT0390 | gi_51473592_ref_YP_067349.1_ | carboxypeptidase IIW | 0.665 | Y | 0.998 | Y | SpI | 6.84331 | 0 | Y | 0.045452 | N | Periplasmic | Cytoplasmic
RT0391 | gi_51473593_ref_YP_067350.1_ | hypothetical protein | 0.026 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.301584 | N | [NAME] | Cytoplasmic
RT0393 | gi_51473595_ref_YP_067352.1_ | hypothetical protein | 0.295 | N | 0.858 | Y | SpI | 3.23922 | 1 | N | 0.41981 | N | [NAME] | Unknown
RT0395 | gi_51473597_ref_YP_067354.1_ | hypothetical protein | 0.581 | Y | 0.763 | Y | SpII | 8.37673 | 0 | Y | 0.577819 | Y | Periplasmic | Unknown
RT0396 | gi_51473598_ref_YP_067355.1_ | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase | 0.05 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.128646 | N | [NAME] | Cytoplasmic
RT0397 | gi_51473599_ref_YP_067356.1_ | cell division protein FtsW | 0.219 | N | 0.956 | Y | TMH | 5.86413 | 8 | N | 0.375299 | N | [NAME] | [NAME]
RT0398 | gi_51473600_ref_YP_067357.1_ | N-acetylglucosaminyl transferase | 0.128 | N | 0.995 | Y | CYT | -0.200913 | 2 | Y | 0.327862 | N | [NAME] | [NAME]
RT0399 | gi_51473601_ref_YP_067358.1_ | hypothetical protein | 0.428 | N | 0.705 | Y | SpII | 14.314 | 0 | Y | 0.863003 | Y | Periplasmic | Unknown
RT0406 | gi_51473608_ref_YP_067365.1_ | hypothetical protein | 0.568 | Y | 0.981 | Y | SpI | 4.77358 | 0 | Y | 0.216296 | N | [NAME] | Unknown
RT0417 | gi_51473619_ref_YP_067376.1_ | hypothetical protein | 0.069 | N | 0.025 | N | CYT | -0.200913 | 0 | Y | 0.276707 | N | [NAME] | Cytoplasmic
RT0429 | gi_51473631_ref_YP_067388.1_ | NAD(P)H-dependent glycerol-3-phosphatedehydrogenase | 0.312 | N | 0.864 | Y | SpI | 0.496273 | 0 | Y | 0.064535 | N | Cytoplasmic | Cytoplasmic
RT0432 | gi_51473634_ref_YP_067391.1_ | NADP-thioredoxin reductase. | 0.469 | Y | 0.929 | Y | SpI | 3.9318 | 0 | Y | 0.095401 | N | Periplasmic | Cytoplasmic
RT0434 | gi_51473636_ref_YP_067393.1_ | DNA helicase II | 0.119 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.107508 | N | [NAME] | Cytoplasmic
RT0437 | gi_51473639_ref_YP_067396.1_ | ATP-dependent protease La. | 0.387 | N | 0.001 | N | CYT | -0.200913 | 0 | Y | 0.165558 | N | Cytoplasmic | Cytoplasmic
RT0438 | gi_51473640_ref_YP_067397.1_ | cell surface antigen [NAME] | 0.591 | Y | 1 | Y | SpI | 15.9346 | 0 | Y | 0.647806 | Y | Extracellular | Unknown
RT0444 | gi_51473645_ref_YP_067402.1_ | hypothetical protein | 0.165 | N | 0.926 | Y | CYT | -0.200913 | 1 | N | 0.08946 | N | Unknown | Unknown
RT0445 | gi_51473646_ref_YP_067403.1_ | hypothetical protein | 0.239 | N | 0.869 | Y | CYT | -0.200913 | 0 | Y | 0.360117 | N | Cytoplasmic | Unknown
RT0459 | [NAME]_ | hypothetical protein | 0.104 | N | 0.025 | N | TMH | 6.75758 | 1 | Y | 0.377393 | N | [NAME] | Unknown
RT0465 | gi_51473665_ref_YP_067422.1_ | hypothetical protein | 0.384 | N | 0.737 | Y | TMH | 7.50004 | 1 | N | 0.056113 | N | [NAME] | Cytoplasmic
RT0470 | gi_51473668_ref_YP_067425.1_ | putrescine-ornithine antiporter | 0.513 | Y | 0.244 | N | TMH | 13.7695 | 12 | N | 0.101877 | N | [NAME] | [NAME]
RT0475 | gi_51473673_ref_YP_067430.1_ | hypothetical protein | 0.2 | N | 0.001 | N | CYT | -0.200913 | 5 | Y | 0.175448 | N | [NAME] | [NAME]
RT0482 | gi_51473679_ref_YP_067436.1_ | hypothetical protein | 0.036 | N | 0 | N | CYT | -0.200913 | 1 | N | 0.282555 | N | [NAME] | Cytoplasmic
RT0491 | gi_51473688_ref_YP_067445.1_ | hypothetical protein | 0.428 | N | 0.015 | N | TMH | 2.48336 | 1 | N | 0.181289 | N | [NAME] | Unknown
RT0492 | gi_51473689_ref_YP_067446.1_ | hypothetical protein | 0.384 | N | 0.721 | Y | CYT | -0.200913 | 0 | Y | 0.053951 | N | Cytoplasmic | Unknown
RT0496 | gi_51473693_ref_YP_067450.1_ | hypothetical protein | 0.143 | N | 0.001 | N | CYT | -0.200913 | 0 | N | 0.255614 | N | Extracellular | Cytoplasmic
RT0502 | gi_51473699_ref_YP_067456.1_ | hypothetical protein | 0.106 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.154365 | N | Extracellular | Cytoplasmic
RT0521 | gi_51473715_ref_YP_067472.1_ | biotin--protein ligase | 0.069 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.180476 | N | [NAME] | Cytoplasmic
RT0546 | gi_51473739_ref_YP_067496.1_ | hypothetical protein | 0.459 | Y | 0.416 | N | CYT | -0.200913 | 0 | Y | 0.219405 | N | [NAME] | [NAME]
RT0547 | gi_51473740_ref_YP_067497.1_ | 3-hydroxyacyl-CoA dehydrogenase | 0.342 | N | 0.626 | Y | CYT | -0.200913 | 0 | N | 0.101972 | N | Cytoplasmic | Cytoplasmic
[NAME] | gi_51473741_ref_YP_067498.1_ | 2-octaprenyl-6-methoxyphenyl hydroxylase | 0.345 | N | 0.969 | Y | SpI | 0.70092 | 0 | Y | 0.051072 | N | Cytoplasmic | Unknown
RT0551 | gi_51473744_ref_YP_067501.1_ | hypothetical protein | 0.231 | N | 0.141 | N | SpII | 6.89618 | 0 | Y | 0.698666 | Y | [NAME] | Extracellular
RT0554 | gi_51473747_ref_YP_067504.1_ | hypothetical protein | 0.273 | N | 0.516 | Y | TMH | 11.9772 | 5 | N | 0.410721 | N | [NAME] | [NAME]
RT0555 | gi_51473748_ref_YP_067505.1_ | cell division protein FtsI/ penicillin-bindingprotein | 0.181 | N | 0.56 | Y | CYT | -0.200913 | 1 | N | 0.10474 | N | [NAME] | [NAME]
RT0556 | gi_51473749_ref_YP_067506.1_ | hypothetical protein | 0.152 | N | 0.027 | N | CYT | -0.200913 | 1 | N | 0.098745 | N | Extracellular | Unknown
RT0561 | gi_51473754_ref_YP_067511.1_ | hypothetical protein | 0.636 | Y | 0.993 | Y | SpI | 9.03644 | 0 | Y | 0.936804 | Y | Extracellular | Unknown
RT0565 | gi_51473757_ref_YP_067514.1_ | protein export protein PrsA precursor | 0.736 | Y | 0.892 | Y | SpII | 11.5828 | 0 | Y | 0.808357 | Y | Unknown | [NAME]
RT0576 | gi_51473766_ref_YP_067523.1_ | Sco2-like protein | 0.261 | N | 0.706 | Y | CYT | -0.200913 | 0 | Y | 0.035471 | N | [NAME] | [NAME]
RT0577 | gi_51473767_ref_YP_067524.1_ | cytochrome c-type biogenesis protein [NAME] | 0.193 | N | 0.512 | Y | CYT | -0.200913 | 1 | N | 0.079518 | N | Cytoplasmic | Unknown
RT0579 | gi_51473769_ref_YP_067526.1_ | MviN-like protein | 0.195 | N | 0.023 | N | CYT | -0.200913 | 13 | Y | 0.368578 | N | [NAME] | [NAME]
RT0582 | gi_51473772_ref_YP_067529.1_ | ATP-dependent DNA helicase [NAME] | 0.039 | N | 0 | N | CYT | -0.200913 | 0 | Y | 0.319923 | N | Cytoplasmic | Cytoplasmic
RT0584 | gi_51473774_ref_YP_067531.1_ | D-alanine ligase. | 0.153 | N | 0.213 | N | CYT | -0.200913 | 0 | Y | 0.235809 | N | Cytoplasmic | Cytoplasmic
RT0586 | gi_51473776_ref_YP_067533.1_ | transcription-repair coupling factor | 0.425 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.255468 | N | [NAME] | Cytoplasmic
RT0591 | gi_51473781_ref_YP_067538.1_ | bicyclomycin resistance protein | 0.475 | Y | 0.324 | N | TMH | 6.84544 | 11 | Y | 0.39188 | N | [NAME] | [NAME]
RT0601 | gi_51473791_ref_YP_067548.1_ | hypothetical protein | 0.214 | N | 0.302 | N | TMH | 5.57402 | 1 | Y | 0.41197 | N | Unknown | [NAME]
RT0603 | gi_51473792_ref_YP_067549.1_ | nitrogen regulation protein NtrY | 0.369 | N | 0.986 | Y | TMH | 10.4891 | 4 | N | 0.095226 | N | [NAME] | [NAME]
RT0612 | gi_51473801_ref_YP_067558.1_ | zinc/manganese ABC transporter permease protein | 0.208 | N | 0.956 | Y | TMH | 14.7002 | 7 | Y | 0.427508 | N | [NAME] | [NAME]
RT0621 | gi_51473810_ref_YP_067567.1_ | permease | 0.355 | N | 0.185 | N | TMH | 8.66566 | 7 | Y | 0.398608 | N | [NAME] | [NAME]
RT0628 | gi_51473816_ref_YP_067573.1_ | 30S ribosomal protein S11 | 0.448 | Y | 0.14 | N | CYT | -0.200913 | 0 | N | 0.88283 | Y | Periplasmic | Cytoplasmic
RT0629 | gi_51473817_ref_YP_067574.1_ | 30S ribosomal protein S13 | 0.208 | N | 0.153 | N | CYT | -0.200913 | 0 | Y | 0.370384 | N | Cytoplasmic | Cytoplasmic
RT0644 | gi_51473832_ref_YP_067589.1_ | 50S ribosomal protein L16 | 0.408 | N | 0.377 | N | CYT | -0.200913 | 0 | Y | 0.315642 | N | Unknown | Cytoplasmic
RT0658 | [NAME]_ | cell division protein FtsZ | 0.142 | N | 0.025 | N | CYT | -0.200913 | 0 | N | 0.090627 | N | Extracellular | Cytoplasmic
RT0661 | gi_51473847_ref_YP_067604.1_ | ATP-dependent RNA helicase RhlE | 0.038 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.077013 | N | Extracellular | Cytoplasmic
RT0667 | gi_51473852_ref_YP_067609.1_ | hypothetical protein | 0.608 | Y | 0.993 | Y | SpI | 3.93991 | 0 | Y | 0.277674 | N | Cytoplasmic | Unknown
RT0668 | gi_51473853_ref_YP_067610.1_ | organic solvent tolerance protein OstA | 0.383 | N | 0.507 | Y | CYT | -0.200913 | 0 | Y | 0.346638 | N | [NAME] | [NAME]
RT0681 | gi_51473866_ref_YP_067623.1_ | prenyltransferase | 0.26 | N | 0.9 | Y | CYT | -0.200913 | 8 | N | 0.354022 | N | [NAME] | [NAME]
RT0691 | gi_51473875_ref_YP_067632.1_ | lipid A export ATP-binding/permease proteinMsbA | 0.197 | N | 0.585 | Y | TMH | 0.191244 | 6 | N | 0.282763 | N | [NAME] | [NAME]
RT0692 | gi_51473876_ref_YP_067633.1_ | hypothetical protein | 0.879 | Y | 0.998 | Y | SpI | 12.8061 | 0 | Y | 0.956818 | Y | Periplasmic | [NAME]
RT0693 | gi_51473877_ref_YP_067634.1_ | bicyclomycin resistance protein | 0.033 | N | 0 | N | CYT | -0.200913 | 11 | Y | 0.230465 | N | [NAME] | [NAME]
RT0694 | gi_51473878_ref_YP_067635.1_ | hypothetical protein | 0.141 | N | 0.924 | Y | TMH | 2.9089 | 4 | N | 0.070314 | N | [NAME] | [NAME]
RT0697 | gi_51473881_ref_YP_067638.1_ | hypothetical protein | 0.478 | Y | 0.999 | Y | SpI | 2.71346 | 4 | N | 0.08424 | N | [NAME] | [NAME]
RT0699 | gi_51473883_ref_YP_067640.1_ | rickettsial outer membrane protein B | 0.79 | Y | 1 | Y | SpI | 19.4282 | 0 | Y | 0.94405 | Y | Extracellular | [NAME]
RT0702 | gi_51473886_ref_YP_067643.1_ | hypothetical protein | 0.098 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.061056 | N | Extracellular | Unknown
RT0720 | gi_51473903_ref_YP_067660.1_ | acyl-carrier-protein S-malonyltransferase | 0.104 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.061381 | N | Extracellular | Cytoplasmic
RT0722 | gi_51473904_ref_YP_067661.1_ | acetyl-CoA acetyltransferase | 0.513 | Y | 0.551 | Y | SpI | 0.337269 | 0 | N | 0.228236 | N | Cytoplasmic | Cytoplasmic
RT0733 | gi_51473915_ref_YP_067672.1_ | hypothetical protein | 0.458 | Y | 0.803 | Y | SpII | 3.83443 | 0 | Y | 0.207491 | N | [NAME] | Cytoplasmic
RT0734 | gi_51473916_ref_YP_067673.1_ | [NAME] translocase protein A | 0.59 | Y | 0.386 | N | CYT | -0.200913 | 0 | Y | 0.109762 | N | Unknown | Unknown
RT0744 | gi_51473926_ref_YP_067683.1_ | hypothetical protein | 0.105 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.288729 | N | [NAME] | Cytoplasmic
RT0752 | [NAME]_ | [NAME] | 0.193 | N | 0.876 | Y | SpI | 0.10968 | 0 | Y | 0.063599 | N | Cytoplasmic | Cytoplasmic
[NAME] | gi_51473939_ref_YP_067696.1_ | peptidoglycan-associated lipoprotein precursor | 0.395 | N | 0.985 | Y | SpII | 19.91 | 0 | Y | 0.617933 | Y | Unknown | [NAME]
RT0760 | gi_51473941_ref_YP_067698.1_ | 50S ribosomal protein L32 | 0.443 | Y | 0.099 | N | CYT | -0.200913 | 0 | N | 0.92723 | Y | Cytoplasmic | Unknown
RT0761 | gi_51473942_ref_YP_067699.1_ | hypothetical protein | 0.548 | Y | 0.932 | Y | SpII | 6.85923 | 0 | Y | 0.110251 | N | [NAME] | Unknown
RT0767 | gi_51473948_ref_YP_067705.1_ | hypothetical protein | 0.499 | Y | 0.999 | Y | SpI | 1.12446 | 0 | Y | 0.053133 | N | [NAME] | Unknown
RT0768 | [NAME]_ | murein peptide permease protein AmpG | 0.403 | N | 0.805 | Y | TMH | 10.3552 | 12 | N | 0.316325 | N | [NAME] | [NAME]
RT0773 | gi_51473954_ref_YP_067711.1_ | hypothetical protein | 0.884 | Y | 1 | Y | SpI | 12.3451 | 0 | Y | 0.919113 | Y | Periplasmic | [NAME]
RT0775 | gi_51473956_ref_YP_067713.1_ | hypothetical protein | 0.298 | N | 0.575 | Y | CYT | -0.200913 | 0 | Y | 0.223993 | N | [NAME] | Unknown
RT0794 | gi_51473975_ref_YP_067732.1_ | penicillin-binding protein 1A | 0.562 | Y | 0.95 | Y | TMH | 7.09729 | 1 | N | 0.129432 | N | [NAME] | [NAME]
RT0797 | gi_51473978_ref_YP_067735.1_ | hypothetical protein | 0.623 | Y | 0.998 | Y | SpI | 3.63289 | 0 | Y | 0.038853 | N | Extracellular | Unknown
RT0807 | gi_51473987_ref_YP_067744.1_ | hypothetical protein | 0.488 | Y | 0.815 | Y | TMH | 1.1259 | 0 | Y | 0.181215 | N | [NAME] | Unknown
RT0812 | gi_51473992_ref_YP_067749.1_ | methionine aminopeptidase | 0.2 | N | 0 | N | CYT | -0.200913 | 0 | N | 0.379974 | N | Extracellular | Cytoplasmic
RT0815 | gi_51473995_ref_YP_067752.1_ | outer surface protein | 0.889 | Y | 1 | Y | SpI | 17.0106 | 0 | Y | 0.946448 | Y | [NAME] | Unknown
RT0816 | gi_51473996_ref_YP_067753.1_ | outer surface protein | 0.762 | Y | 1 | Y | SpI | 9.63892 | 0 | Y | 0.782752 | Y | [NAME] | Unknown
RT0818 | gi_51473998_ref_YP_067755.1_ | heme exporter protein C | 0.294 | N | 0.534 | Y | TMH | 14.6486 | 6 | N | 0.38266 | N | [NAME] | [NAME]
RT0821 | gi_51474001_ref_YP_067758.1_ | rickettsial 17 kDa surface antigen precursor | 0.82 | Y | 0.999 | Y | SpII | 21.5057 | 0 | Y | 0.956353 | Y | Periplasmic | Unknown
RT0825 | gi_51474005_ref_YP_067762.1_ | hypothetical protein | 0.485 | Y | 0.91 | Y | SpI | 3.89992 | 0 | Y | 0.215249 | N | Extracellular | Unknown
RT0853 | gi_51474032_ref_YP_067789.1_ | hypothetical protein | 0.597 | Y | 0.997 | Y | SpI | 2.8892 | 0 | Y | 0.039589 | N | Periplasmic | Cytoplasmic
RT0858 | gi_51474036_ref_YP_067793.1_ | hypothetical protein | 0.209 | N | 0.698 | Y | TMH | 1.1453 | 3 | N | 0.261059 | N | [NAME] | [NAME]
RT0860 | gi_51474038_ref_YP_067795.1_ | phosphonate metabolism protein PhnP | 0.079 | N | 0.058 | N | CYT | -0.200913 | 0 | Y | 0.057862 | N | Periplasmic | Cytoplasmic
RT0862 | gi_51474040_ref_YP_067797.1_ | hypothetical protein | 0.099 | N | 0.624 | Y | TMH | 10.0298 | 6 | N | 0.387819 | N | [NAME] | [NAME]
RT0865 | gi_51474042_ref_YP_067799.1_ | succinyl-diaminopimelate desuccinylase | 0.195 | N | 0.001 | N | CYT | -0.200913 | 0 | N | 0.058061 | N | Extracellular | Cytoplasmic
NB:  Proteins highlighted in green also have signals for non-classical secretion mechanisms.