Spreadsheet: 0987b2a5-1682-4462-8e4f-3d38c088e49b
Sheet: Sheet1

Table S5.  Strain-specific ORFs with annotations | Unnamed: 1
C. jejuni RM1221:
CJE0031 | type II restriction-modification enzyme
CJE0032 | membrane protein, putative
CJE0045 | hypothetical protein
CJE0050 | hypothetical protein
CJE0052 | hypothetical protein
CJE0053 | hypothetical protein
CJE0140 | methyl-accepting chemotaxis protein
CJE0169 | hypothetical protein
CJE0202 | hypothetical protein
CJE0203 | hypothetical protein
CJE0204 | hypothetical protein
CJE0205 | hypothetical protein
CJE0206 | hypothetical protein
CJE0207 | hypothetical protein
CJE0208 | conserved domain protein
CJE0209 | hypothetical protein
CJE0210 | hypothetical protein
CJE0211 | pathogenicity domain protein
CJE0212 | pathogenicity protein, homolog
CJE0213 | hypothetical protein
CJE0214 | hypothetical protein
CJE0216 | hypothetical protein
CJE0217 | conserved hypothetical protein
CJE0218 | hypothetical protein
CJE0219 | hypothetical protein
CJE0220 | DNA adenine methylase (dam) [2.1.1.72]
CJE0221 | phage virion morphogenesis protein, putative
CJE0222 | tail tape measure protein, [NAME] family
CJE0223 | hypothetical protein
CJE0224 | hypothetical protein
CJE0225 | conserved domain protein
CJE0226 | phage major tail tube protein, putative
CJE0227 | major tail sheath protein
CJE0228 | hypothetical protein
CJE0230 | hypothetical protein
CJE0231 | tail fiber protein H, putative
CJE0232 | phage tail protein, putative
CJE0233 | baseplate assembly protein J, putative
CJE0234 | baseplate assembly protein W, putative
CJE0235 | hypothetical protein
CJE0236 | baseplate assembly protein V, putative
CJE0237 | conserved hypothetical protein
CJE0238 | hypothetical protein
CJE0239 | [NAME], putative
CJE0240 | hypothetical protein
CJE0241 | conserved hypothetical protein
CJE0242 | hypothetical protein
CJE0243 | hypothetical protein
CJE0244 | Mu-like prophage I protein, putative
CJE0245 | hypothetical protein
[NAME] | conserved hypothetical protein
CJE0247 | conserved domain protein
CJE0248 | hypothetical protein
CJE0249 | phage uncharacterized protein
CJE0250 | hypothetical protein
[NAME] | prophage MuSo1, F protein, putative
CJE0252 | phage tail protein, putative
CJE0253 | tail protein X, putative
CJE0254 | tail protein D, putative
CJE0255 | DNA-binding protein, putative
CJE0256 | extracellular deoxyribonuclease (dns) [3.1.21.1]
CJE0257 | conserved domain protein
CJE0258 | conserved domain protein
CJE0259 | hypothetical protein
CJE0260 | hypothetical protein
CJE0261 | hypothetical protein
CJE0262 | conserved hypothetical protein TIGR01671
CJE0263 | hypothetical protein
CJE0264 | hypothetical protein
CJE0265 | host-nuclease inhibitor protein Gam, putative
CJE0266 | conserved hypothetical protein
CJE0267 | hypothetical protein
CJE0268 | conserved domain protein
CJE0269 | bacteriophage DNA transposition protein B, putative
CJE0270 | bacteriophage DNA transposition protein A, putative
CJE0271 | hypothetical protein
CJE0272 | transcriptional regulator, putative
CJE0273 | hypothetical protein
CJE0296 | conserved domain protein
CJE0310 | D12 class [NAME] adenine-specific DNA methyltransferase, putative
CJE0392 | hypothetical protein
CJE0393 | hypothetical protein
CJE0408 | hypothetical protein
CJE0465 | hypothetical protein
CJE0473 | hypothetical protein
CJE0474 | [NAME], putative
CJE0479 | hypothetical protein
CJE0487 | hypothetical protein
[NAME] | hypothetical protein
CJE0531 | hypothetical protein
CJE0544 | site-specific recombinase, phage integrase family
CJE0545 | DNA binding domain, excisionase family
[NAME] | pentapeptide repeat family protein
CJE0547 | hypothetical protein
CJE0548 | phage anti-repressor protein, putative
CJE0549 | hypothetical protein
CJE0550 | site-specific DNA-methyltransferase, putative
CJE0551 | conserved domain protein
CJE0552 | hypothetical protein
CJE0553 | hypothetical protein
CJE0554 | hypothetical protein
CJE0555 | hypothetical protein
CJE0556 | conserved domain protein
CJE0557 | conserved domain protein
CJE0558 | hypothetical protein
CJE0559 | hypothetical protein
CJE0560 | hypothetical protein
CJE0561 | hypothetical protein
CJE0562 | conserved domain protein
[NAME] | hypothetical protein
CJE0564 | hypothetical protein
CJE0565 | hypothetical protein
CJE0566 | DNA/RNA non-specific endonuclease
CJE0567 | hypothetical protein
CJE0568 | conserved hypothetical protein
CJE0569 | phage repressor protein, putative
CJE0570 | hypothetical protein
[NAME] | hypothetical protein
CJE0572 | [NAME], putative
CJE0573 | hypothetical protein
CJE0574 | hypothetical protein
CJE0575 | hypothetical protein
[NAME] | conserved domain protein
CJE0577 | terminase B protein, putative
CJE0578 | conserved domain protein
CJE0579 | hypothetical protein
CJE0580 | hypothetical protein
CJE0581 | hypothetical protein
CJE0582 | hypothetical protein
CJE0583 | hypothetical protein
CJE0584 | hypothetical protein
CJE0585 | hypothetical protein
CJE0586 | hypothetical protein
CJE0587 | hypothetical protein
CJE0588 | hypothetical protein
CJE0589 | hypothetical protein
CJE0590 | hypothetical protein
CJE0591 | hypothetical protein
CJE0592 | hypothetical protein
CJE0593 | conserved domain protein
CJE0594 | conserved hypothetical protein
CJE0596 | hypothetical protein
CJE0597 | hypothetical protein
CJE0599 | hypothetical protein
[NAME] | hypothetical protein
CJE0601 | hypothetical protein
CJE0670 | GTP-binding protein
CJE0721 | hypothetical protein
CJE0731 | type III restriction/modification enzyme, methylase subunit
[NAME] | hypothetical protein
CJE0762 | hypothetical protein
CJE0773 | hypothetical protein
CJE0776 | potassium-transporting ATPase, C subunit, putative
CJE0799 | hypothetical protein
CJE0837 | haemagglutination domain protein
CJE0838 | hypothetical protein
CJE0839 | conserved domain protein
CJE0840 | conserved domain protein
CJE0841 | conserved domain protein
CJE0842 | conserved domain protein
[NAME] | hypothetical protein
[NAME] | hypothetical protein
CJE1029 | hypothetical protein
CJE1046 | hypothetical protein
[NAME] | hypothetical protein
CJE1049 | hypothetical protein
CJE1050 | hypothetical protein
CJE1051 | hypothetical protein
CJE1052 | hypothetical protein
CJE1054 | conserved domain protein
CJE1055 | hypothetical protein
CJE1068 | membrane protein, putative
CJE1069 | conserved domain protein
CJE1092 | hypothetical protein
CJE1093 | conserved hypothetical protein
CJE1094 | site-specific recombinase, phage integrase family
CJE1095 | hypothetical protein
CJE1096 | conserved domain protein
CJE1097 | hypothetical protein
CJE1098 | hypothetical protein
CJE1099 | hypothetical protein
CJE1100 | death-on-curing family protein
CJE1101 | hypothetical protein
CJE1102 | hypothetical protein
CJE1103 | conserved hypothetical protein
CJE1104 | hypothetical protein
CJE1105 | hypothetical protein
CJE1106 | hypothetical protein
CJE1107 | TraG protein, homolog
CJE1108 | hypothetical protein
CJE1109 | hypothetical protein
CJE1110 | hypothetical protein
CJE1111 | hypothetical protein
[NAME] | hypothetical protein
CJE1113 | hypothetical protein
CJE1114 | hypothetical protein
CJE1115 | conserved domain protein
CJE1116 | hypothetical protein
CJE1117 | conserved domain protein
CJE1118 | hypothetical protein
CJE1119 | hypothetical protein
CJE1120 | hypothetical protein
CJE1122 | conserved domain protein
CJE1123 | conserved domain protein
[NAME] | conserved domain protein
CJE1125 | hypothetical protein
CJE1126 | hypothetical protein
CJE1127 | hypothetical protein
CJE1128 | hypothetical protein
CJE1129 | hypothetical protein
CJE1130 | hypothetical protein
CJE1131 | hypothetical protein
CJE1132 | hypothetical protein
CJE1133 | hypothetical protein
CJE1134 | hypothetical protein
CJE1135 | hypothetical protein
CJE1137 | conserved hypothetical protein
CJE1139 | hypothetical protein
CJE1141 | hypothetical protein
CJE1142 | conserved domain protein
CJE1143 | hypothetical protein
[NAME] | hypothetical protein
CJE1145 | hypothetical protein
CJE1146 | hypothetical protein
CJE1147 | hypothetical protein
CJE1148 | hypothetical protein
CJE1149 | hypothetical protein
CJE1150 | hypothetical protein
CJE1151 | hypothetical protein
CJE1152 | hypothetical protein
CJE1153 | hypothetical protein
CJE1154 | hypothetical protein
CJE1155 | hypothetical protein
CJE1278 | lipooligosaccharide biosynthesis galactosyltransferase, putative
CJE1281 | conserved hypothetical protein
CJE1349 | hypothetical protein
CJE1375 | hypothetical protein
CJE1376 | hypothetical protein
CJE1384 | hypothetical protein
CJE1421 | site-specific DNA-methyltransferase
CJE1422 | emm-like protein
CJE1424 | hypothetical protein
CJE1425 | hypothetical protein
CJE1426 | hypothetical protein
CJE1427 | hypothetical protein
CJE1428 | hypothetical protein
CJE1429 | conserved hypothetical protein
CJE1430 | RloG protein, putative
CJE1431 | hypothetical protein
CJE1432 | hypothetical protein
CJE1433 | hypothetical protein
CJE1434 | conserved domain protein
CJE1435 | DNA-binding protein Roi
CJE1437 | hypothetical protein
CJE1438 | hypothetical protein
CJE1439 | hypothetical protein
CJE1440 | signal peptidase I, putative
CJE1442 | conserved domain protein
CJE1444 | hypothetical protein
CJE1446 | hypothetical protein
CJE1447 | hypothetical protein
[NAME] | conserved hypothetical protein
CJE1449 | hypothetical protein
CJE1451 | hypothetical protein
CJE1455 | hypothetical protein
CJE1456 | hypothetical protein
CJE1462 | hypothetical protein
CJE1463 | conserved hypothetical protein
CJE1470 | toxin-antitoxin protein, putative
CJE1495 | conserved domain protein
CJE1500 | polysaccharide deacetylase family protein
CJE1503 | hypothetical protein
CJE1515 | formyltransferase, putative
CJE1527 | hypothetical protein
CJE1550 | hypothetical protein
CJE1551 | hypothetical protein
CJE1552 | hypothetical protein
CJE1602 | capsular polysaccharide biosynthesis protein, putative
CJE1603 | capsular polysaccharide biosynthesis protein, putative
CJE1611 | GDP-mannose 4,6-dehydratase (wcbK) [4.2.1.47]
[NAME] | capsular polysaccharide biosynthesis protein, putative
CJE1614 | hypothetical protein
CJE1615 | capsular polysaccharide biosynthesis glycosyltransferase WcbB, putative
CJE1616 | capsular polysaccharide biosynthesis protein, putative
CJE1629 | conserved domain protein
CJE1630 | hypothetical protein
CJE1672 | hypothetical protein
CJE1687 | hypothetical protein
CJE1692 | conserved hypothetical protein
CJE1698 | hypothetical protein
CJE1721 | RloC protein, putative
CJE1725 | 4-carboxymuconolactone decarboxylase, putative
[NAME] | hypothetical protein
CJE1727 | conserved hypothetical protein
CJE1733 | arsenical-resistance protein, putative
CJE1760 | conserved domain protein
CJE1761 | metallo-beta-lactamase domain protein
CJE1829 | hypothetical protein
CJE1840 | hypothetical protein
CJE1877 | hypothetical protein
C. jejuni NCTC 11168:
ald'_6967960 | aldehyde dehydrogenase N-terminus
flgE2_6969144 | flagellar hook subunit protein
glpT'_6967766 | glycerol-3-phosphate transporter (possible pseudogene)
kdpB_6968135 | potassium-transporting ATPase B chain
kdpD'_6968136 | truncated KdpD protein
kfiD_6968870 | putative UDP-glucose 6-dehydrogenase
metC'_6968823 | putative cystathionine beta-lyase, N-terminus
neuA1_6968577 | acylneuraminate cytidylyltransferase
[NAME] | N-acetylneuraminic acid synthetase
[NAME] | putative N-acetylglucosamine-6-phosphate 2-epimerase/N-acetylglucosamine-6-phosphatase
tonB2_6969047 | putative tonB transport protein
wlaJ_6968556 | putative integral membrane protein
Cj0008_6967513 | hypothetical protein Cj0008
Cj0014c_6967519 | putative integral membrane protein
Cj0033_6967538 | putative integral membrane protein
Cj0170_6967663 | hypothetical protein Cj0170
Cj0171_6967664 | hypothetical protein Cj0171
Cj0203_6967696 | putative transmembrane transport protein
Cj0246c_6967723 | putative MCP-domain signal transduction protein
Cj0247c_6967724 | hypothetical protein Cj0247c
Cj0344_6967819 | hypothetical protein Cj0344
Cj0416_6967890 | hypothetical protein Cj0416
Cj0417_6967891 | hypothetical protein Cj0417
Cj0423_6967897 | putative integral membrane protein
Cj0424_6967898 | putative acidic periplasmic protein
Cj0425_6967899 | putative periplasmic protein
Cj0455c_6967926 | putative membrane protein
Cj0522_6967990 | putative membrane protein
Cj0523_6967991 | putative membrane protein
Cj0524_6967992 | hypothetical protein Cj0524
Cj0566_6968033 | hypothetical protein Cj0566
Cj0567_6968034 | hypothetical protein Cj0567
Cj0568_6968035 | hypothetical protein Cj0568
Cj0569_6968036 | hypothetical protein Cj0569
Cj0628_6968095 | putative lipoprotein
Cj0629_6968096 | possible lipoprotein
Cj0672_6968134 | putative periplasmic protein
Cj0736_6968193 | hypothetical protein Cj0736
Cj0737_6968194 | putative periplasmic protein
Cj0738_6968195 | hypothetical protein Cj0738
Cj0739_6968196 | hypothetical protein Cj0739
Cj0740_6968197 | hypothetical protein Cj0740
Cj0741_6968198 | hypothetical protein Cj0741
Cj0747_6968199 | hypothetical protein Cj0747
Cj0814_6968260 | hypothetical protein Cj0814
Cj0815_6968261 | hypothetical protein Cj0815
Cj0816_6968262 | hypothetical protein Cj0816
Cj0818_6968264 | putative lipoprotein
Cj0864_6968310 | putative periplasmic protein
Cj0873c_6968313 | hypothetical protein Cj0873c
Cj0874c_6968314 | cytochrome C
Cj0876c_6968315 | putative periplasmic protein
Cj0877c_6968316 | very hypothetical protein Cj0877c
Cj0952c_6968389 | putative membrane protein
Cj0967_6968403 | putative periplasmic protein
Cj0968_6968404 | putative periplasmic protein
Cj0970_6968405 | hypothetical protein Cj0970
Cj0971_6968406 | hypothetical protein Cj0971
Cj0973_6968408 | hypothetical protein Cj0973
Cj0974_6968409 | very hypothetical protein Cj0974
Cj0986c_6968421 | putative integral membrane protein
Cj0987c_6968422 | putative integral membrane protein
Cj0988c_6968423 | very hypothetical protein Cj0988c
Cj1055c_6968491 | putative integral membrane protein
Cj1140_6968574 | hypothetical protein Cj1140
Cj1144c_6968578 | hypothetical protein Cj1144c
Cj1145c_6968579 | hypothetical protein Cj1145c
Cj1158c_6968591 | small hydrophobic protein
Cj1159c_6968592 | small hydrophobic protein
Cj1160c_6968593 | small hydrophobic protein
Cj1301_6968735 | hypothetical protein Cj1301
Cj1305c_6968739 | hypothetical protein Cj1305c (617 family)
Cj1306c_6968740 | hypothetical protein Cj1306c (617 family)
Cj1321_6968755 | putative transferase
Cj1322_6968756 | hypothetical protein Cj1322
Cj1323_6968757 | hypothetical protein Cj1323
Cj1336_6968770 | hypothetical protein Cj1336 (1318 family)
Cj1422c_6968851 | possible sugar transferase
Cj1429c_6968858 | hypothetical protein Cj1429c
Cj1431c_6968860 | hypothetical protein Cj1431c
Cj1432c_6968861 | putative sugar transferase
Cj1433c_6968862 | hypothetical protein Cj1433c
[NAME] | hypothetical protein Cj1435c
Cj1436c_6968865 | putative aminotransferase
Cj1437c_6968866 | putative aminotransferase
Cj1438c_6968867 | putative sugar transferase
Cj1440c_6968869 | putative sugar transferase
Cj1442c_6968871 | hypothetical protein Cj1442c
Cj1456c_6968884 | putative periplasmic protein
Cj1520_6968944 | hypotetical protein Cj1520
Cj1523c_6968947 | hyopthetical protein Cj1523c
Cj1549c_6968968 | putative type I restriction enzyme R protein
[NAME] | putative ATP/GTP-binding protein
Cj1551c_6968970 | putative type I restriction enzyme S protein
[NAME] | hypothetical protein Cj1552c
Cj1553c_6968973 | putative type I restriction enzyme M protein
Cj1555c_6968974 | hypothetical protein Cj1555c
Cj1556_6968975 | hypothetical protein Cj1556
Cj1558_6968976 | putative membrane protein
Cj1561_6968978 | putative transcriptional regulator
Cj1562_6968979 | hypothetical protein Cj1562
Cj1589_6969006 | hypothetical protein Cj1589
Cj1668c_6969084 | putative periplasmic protein
[NAME] | putative lipoprotein
Cj1678_6969094 | possible lipoprotein
Cj1679_6969095 | hypothetical protein Cj1679
Cj1722c_6969137 | hypothetical protein Cj1722c
[NAME] | putative periplasmic protein
C. lari RM2100:
[NAME] | flagellar hook protein FlgE (flgG)
CLA0002 | conserved hypothetical protein
CLA0058 | anaerobic ribonucleoside-triphosphate reductase activating protein (nrdG)
[NAME] | anaerobic ribonucleoside-triphosphate reductase, putative [1.17.4.2]
CLA0060 | membrane associated lipoprotein precursor (putative)
CLA0074 | conserved hypothetical protein
CLA0075 | Uncharacterized protein containing a von Willebrand factor type A (vWA) domain, putative
CLA0085 | radical SAM domain protein protein
CLA0086 | hypothetical protein
CLA0094 | YsaH
CLA0104 | adenosine deaminase (add) [3.5.4.4]
[NAME] | conserved domain protein
CLA0113 | probable periplasmic protein [NAME] [imported], putative
CLA0117 | conserved hypothetical protein
CLA0119 | major outer membrane protein
CLA0126 | threonine efflux protein, putative
[NAME] | transformation system protein (ctsG)
CLA0151 | filamentous haemagglutinin domain protein
CLA0157 | iron(III) ABC transporter, ATP-binding protein
CLA0158 | similar to mobilization/cell filamentation proteins (fic)
CLA0161 | hypothetical protein
CLA0163 | hook assembly protein, flagella (flgD), putative
CLA0164 | conserved hypothetical protein
CLA0165 | conserved hypothetical protein
CLA0168 | carbonic anhydrase VCA0274 [imported], putative
CLA0179 | probable periplasmic protein Cj0200c [imported]
CLA0181 | conserved domain protein
CLA0199 | conserved hypothetical protein
CLA0204 | GGDEF domain protein
[NAME] | hypothetical protein
CLA0221 | hypothetical protein
CLA0223 | hypothetical protein
CLA0224 | probable helicase Cj0945c [imported]
CLA0225 | hypothetical protein
CLA0228 | type IIS restriction /modification enzyme
CLA0229 | membrane protein, putative
CLA0230 | hypothetical protein
[NAME] | transporter, BCCT family (opuD)
CLA0238 | hypothetical protein
CLA0264 | [NAME], putative
CLA0270 | probable membrane protein Cj0152c [imported]
[NAME] | C4-dicarboxylate anaerobic carrier, putative
CLA0310 | peptidase T (pepT) [3.4.11.14]
CLA0334 | conserved hypothetical protein
CLA0341 | probable ATP /GTP binding protein Cj0017c [imported], putative
CLA0356 | methyl-accepting chemotaxis protein (tlpA)
CLA0362 | flagellar protein G (flaG), putative
CLA0363 | conserved hypothetical protein
CLA0364 | conserved hypothetical protein
[NAME] | conserved hypothetical protein
[NAME] | hypothetical protein
CLA0372 | probable acyl carrier protein Cj1308 [imported]-related protein
[NAME] | conserved hypothetical protein
CLA0374 | conserved hypothetical protein
CLA0399 | NADP-specific glutamate dehydrogenase (gdhA)
CLA0406 | hypothetical protein
CLA0421 | conserved hypothetical protein
CLA0422 | ImpB/MucB/SamB family protein
CLA0448 | glycosyl transferase CpsJ (V)
[NAME] | beta-1,3-galactosyltransferase
CLA0450 | hypothetical protein
CLA0455 | formyltransferase, putative
CLA0456 | LmbE-related protein
CLA0463 | probable ATPase [imported]
CLA0474 | conserved hypothetical protein
[NAME] | probable lipoprotein Cj1649 [imported], putative
CLA0477 | Copper/zinc superoxide dismutase (sodC)
CLA0482 | sensor histidine kinase, putative
CLA0483 | response regulator (drrA)
CLA0484 | conserved hypothetical protein
CLA0488 | probable periplasmic protein Cj0093 [imported], putative
CLA0496 | methyl-accepting chemotaxis protein (tlpA)
[NAME] | methyl-accepting chemotaxis protein, putative
CLA0513 | probable periplasmic protein Cj1680c [imported], putative
CLA0522 | conserved hypothetical protein
CLA0565 | conserved hypothetical protein
CLA0581 | probable endonuclease Cj0139 [imported]
CLA0582 | membrane associated lipoprotein precursor
[NAME] | proline dipeptidase TC0863 [imported] (pepQ) [3.4.13.9]
CLA0597 | [NAME], putative
CLA0608 | conserved hypothetical protein
CLA0616 | universal stress protein family domain protein
[NAME] | conserved hypothetical protein
[NAME] | membrane associated lipoprotein precursor
CLA0619 | hypothetical protein
[NAME] | transcriptional regulator, [NAME] family, putative
CLA0628 | conserved hypothetical protein
CLA0634 | C4-dicarboxylate anaerobic carrier, putative
CLA0651 | Putative glycerol-3-phosphate cytidyltransferase (tagD2) [2.7.7.39]
CLA0652 | conserved hypothetical protein
[NAME] | teichoic acid biosynthesis protein
CLA0654 | hypothetical protein
CLA0656 | capsular polysaccharide biosynthesis protein, putative
CLA0659 | conserved hypothetical protein
CLA0667 | probable sugar transferase Cj1422c [imported]
CLA0668 | probable sugar transferase Cj1422c [imported], putative
CLA0669 | conserved hypothetical protein
CLA0670 | conserved hypothetical protein
CLA0678 | conserved hypothetical protein
CLA0683 | conserved hypothetical protein
CLA0686 | conserved hypothetical protein
CLA0696 | [NAME] transporter (pnuC)
[NAME] | Protein of unknown function (DUF319) family
CLA0702 | hypothetical protein
CLA0704 | RloE
CLA0705 | RloG
CLA0707 | conserved hypothetical protein
CLA0715 | conserved hypothetical protein
[NAME] | formate dehydrogenase, alpha subunit ([NAME]) [1.2.1.2]
CLA0736 | conserved hypothetical protein
CLA0744 | hypothetical protein
CLA0745 | methyl-accepting chemotaxis protein (tlpA)
CLA0751 | conserved hypothetical protein
CLA0753 | probable membrane protein Cj1472c [imported]
CLA0759 | conserved hypothetical protein
CLA0765 | conserved hypothetical protein
CLA0766 | conserved hypothetical protein
CLA0776 | hypothetical protein
CLA0783 | TPR-domain containing protein, putative
CLA0785 | membrane protein, putative
[NAME] | xanthine guanine phosphoribosyl transferase (gpt) (gptA-1)
CLA0793 | biotin sulfoxide reductase (bisC)
CLA0794 | conserved hypothetical protein
CLA0797 | major outer membrane protein
CLA0817 | Putative heme iron utilization protein, putative
CLA0819 | bacteroid development protein BacA
CLA0820 | proline permease (putP)
CLA0821 | hypothetical protein
CLA0824 | conserved hypothetical protein
CLA0825 | cell wall-associated hydrolase, putative
CLA0827 | hypothetical protein
CLA0848 | hypothetical protein
CLA0861 | probable membrane protein Cj1245c [imported], putative
CLA0864 | Na+/H+ antiporter
CLA0871 | conserved hypothetical protein
CLA0881 | conserved hypothetical protein
CLA0882 | conserved hypothetical protein
[NAME] | cell wall-associated hydrolase, putative
[NAME] | hypothetical protein
CLA0902 | xanthine/uracil permease family protein VC2712 [imported]
CLA0916 | ribonuclease P protein component (rnpA) [3.1.26.5]
CLA0922 | type IIS restriction /modification enzyme
CLA0923 | hypothetical protein
CLA0925 | arylsulfate sulfotransferase
CLA0927 | conserved hypothetical protein
CLA0935 | hypothetical protein
CLA0945 | probable integral membrane protein Cj0852c [imported]
CLA1010 | Glycosyl transferase family 8 family
CLA1011 | ABC transporter, permease component CAC0985 [imported]
CLA1014 | probable periplasmic protein Cj0776c [imported]
CLA1058 | amino acid ABC transporter, permease protein SP0711 [imported] (glnP)
CLA1069 | rhodanese family protein
CLA1084 | probable periplasmic protein Cj1626c [imported]
CLA1096 | hypothetical protein
CLA1099 | dynein heavy chain, putative
CLA1109 | hypothetical protein
CLA1130 | conserved hypothetical protein
[NAME] | hypothetical protein
CLA1133 | conserved hypothetical protein
CLA1135 | flagellar hook-associated protein 2 (fliD), putative
CLA1143 | conserved hypothetical protein
CLA1168 | conserved hypothetical protein
CLA1177 | cytochrome c, putative
[NAME] | membrane protein, putative
CLA1179 | thiol:disulfide interchange protein (dsbC), putative
CLA1180 | cytochrome c biogenesis protein (ycf5)
CLA1181 | hypothetical protein
CLA1198 | conserved hypothetical protein
CLA1200 | conserved hypothetical protein
CLA1201 | hypothetical protein
CLA1202 | hypothetical protein
CLA1203 | hypothetical protein
CLA1205 | hypothetical protein
CLA1206 | hypothetical protein
CLA1207 | hypothetical protein
CLA1208 | exonuclease family
CLA1209 | Family of unknown function (DUF450) family
CLA1210 | conserved hypothetical protein
CLA1216 | hypothetical protein
CLA1218 | hypothetical protein
CLA1222 | hypothetical protein
CLA1228 | hypothetical protein
CLA1235 | antirepressor, putative
CLA1236 | hypothetical protein
CLA1237 | hypothetical protein
CLA1238 | conserved hypothetical protein
CLA1239 | hypothetical protein
CLA1244 | conserved hypothetical protein
CLA1245 | probable transcription regulator [NAME] [imported]
[NAME] | conserved hypothetical protein
CLA1248 | peptidylarginine deiminase family protein
CLA1249 | conserved hypothetical protein
CLA1250 | ATPase, AAA family, putative
[NAME] | hypothetical protein
CLA1252 | conserved hypothetical protein
CLA1253 | endonuclease, probable [imported]
CLA1254 | hypothetical protein
CLA1255 | conserved hypothetical protein
CLA1256 | conserved hypothetical protein
CLA1257 | conserved hypothetical protein
CLA1258 | hypothetical protein
CLA1259 | hypothetical protein
CLA1260 | conserved hypothetical protein
[NAME] | hypothetical protein
CLA1262 | conserved hypothetical protein
CLA1263 | hypothetical protein
CLA1264 | Protein of unknown function [NAME] family
CLA1265 | Protein of unknown function [NAME] family
CLA1266 | Regulatory SIR2 family protein, putative
CLA1267 | hypothetical protein
CLA1269 | hypothetical protein
[NAME] | MW0823 (ndh)
CLA1286 | conserved hypothetical protein
CLA1287 | conserved hypothetical protein
CLA1293 | sodium/glutamate symporter (gltS)
CLA1303 | conserved hypothetical protein
CLA1315 | hypothetical protein
CLA1334 | probable periplasmic protein Cj1078 [imported], putative
CLA1335 | transformation system protein (ctsT)
CLA1342 | methyl-accepting chemotaxis protein
CLA1345 | drug transporter, putative
CLA1346 | transcriptional regulator, MarR family, putative
CLA1352 | MadN protein VC0075 [imported]
[NAME] | formyltetrahydrofolate deformylase VC1992 [imported] (purU) [3.5.1.10]
CLA1407 | putative potassium channel protein, putative
CLA1414 | Probable sigma(54) modulation protein; SSU ribosomal protein S30P, putative
CLA1423 | conserved hypothetical integral membrane protein
CLA1454 | conserved hypothetical protein
CLA1468 | highly acidic protein Cj1178c [imported]
[NAME] | methyl-accepting chemotaxis protein, putative
CLA1486 | major outer membrane protein Cj1259 [imported]
CLA1494 | hypothetical protein
CLA1502 | [NAME] (thiM) [2.7.1.50]
CLA1530 | conserved hypothetical protein
CLA1541 | [NAME], putative
CLA1552 | conserved hypothetical protein
CLA1558 | conserved hypothetical protein
CLA1581 | sodium- and chloride-dependent transporter
[NAME] | [NAME], putative
CLA1594 | thiol:disulfide interchange protein DsbE, putative
CLA1595 | hypothetical protein
CLA1604 | magnesium transporter, putative
CLA1605 | [NAME] (tpx) [1.11.1.-]
CLA1607 | cysteine synthase (cysK) [4.2.99.8]
C. upsaliensis RM3195:
CUP0001 | conserved hypothetical protein
CUP0002 | type II DNA modification enzyme
CUP0003 | hypothetical protein
CUP0004 | hypothetical protein
CUP0016 | major antigenic peptide PEB2 Cj0778 [imported]
CUP0023 | ulcer associated adenine specific DNA methyltransferase
CUP0024 | conserved hypothetical protein
CUP0025 | hypothetical protein
CUP0026 | major facilitator family transporter
CUP0028 | arsenical resistence operon repressor
CUP0029 | transcription regulator (ArsR family) BH2996 [imported] ([NAME])
CUP0039 | hypothetical protein
CUP0042 | hypothetical protein
CUP0068 | hypothetical protein
CUP0121 | general glycosylation pathway protein (pglB)
CUP0141 | helicase domain protein
CUP0142 | ATP-dependent RNA helicase, DEAD/DEAH box family
CUP0159 | capsule biosynthesis phosphatase subfamily
CUP0166 | conserved hypothetical protein
CUP0177 | hypothetical protein
CUP0183 | conserved hypothetical protein
CUP0184 | RloF, putative
CUP0185 | capsular polysaccharide biosynthesis protein, putative
CUP0186 | replicative DNA helicase (dnaB) [3.6.1.-]
CUP0187 | hypothetical protein
CUP0188 | conserved hypothetical protein
CUP0189 | conserved hypothetical protein
CUP0190 | hypothetical protein
[NAME] | hypothetical protein
CUP0192 | hypothetical protein
CUP0193 | conserved hypothetical protein
CUP0198 | probable DNA methylase HsdM VC1769 [imported]
CUP0199 | type I restriction-modification system specificity subunit, putative
CUP0200 | probable type I restriction enzyme HsdR VC1765 [imported]
CUP0209 | glutamyl-tRNA(Gln) amidotransferase subunit C, putative
CUP0212 | probable lipoprotein Cj0396c [imported]
CUP0225 | hypothetical protein
CUP0226 | hypothetical protein
CUP0234 | conserved hypothetical protein
[NAME] | modification methylase
CUP0236 | hypothetical protein
CUP0237 | adenine specific DNA methyltransferase (MFOKI)
[NAME] | conserved hypothetical protein
CUP0274 | phosphorylcholine transferase (licD)
[NAME] | [NAME] (licC)
CUP0276 | choline transporter (licB)
CUP0277 | [NAME] (licA)
CUP0285 | hypothetical protein
CUP0286 | hypothetical protein
CUP0287 | [NAME] family protein [3.1.31.1]
CUP0288 | hypothetical protein
CUP0289 | hypothetical protein
CUP0295 | conserved hypothetical protein
CUP0306 | probable integral membrane protein Cj0999c [imported]
CUP0307 | membrane protein, putative
CUP0308 | hypothetical protein
CUP0309 | hypothetical protein
[NAME] | hypothetical protein
CUP0317 | Protein of unknown function (DUF465) family
CUP0322 | probable sugar transferase Cj1422c [imported]
CUP0323 | hypothetical protein
CUP0324 | conserved domain protein
[NAME] | sensor histidine kinase HpkA (hpkA)
CUP0326 | phosphate regulon response regulator PhoB (drrA)
[NAME] | phosphate ABC transporter, permease protein SP2086 [imported] (pstA)
CUP0329 | phosphate ABC transporter, permease protein (pstC)
CUP0330 | phosphate ABC transporter, periplasmic phosphate-binding protein
CUP0331 | hypothetical protein
CUP0333 | hypothetical protein
CUP0334 | probable efflux protein Cj0309c [imported]
CUP0344 | trat complement resistance protein precursor
CUP0350 | 4-hydroxythreonine-4-phosphate dehydrogenase (pdxA) [1.1.1.262]
CUP0359 | conserved hypothetical protein
CUP0360 | hypothetical protein
CUP0362 | type II restriction enzyme M protein (hsdM)
[NAME] | probable lipoprotein Cj0818 [imported]-related protein
CUP0396 | conserved hypothetical protein
CUP0428 | PPE, putative
CUP0429 | hypothetical protein
CUP0430 | hypothetical protein
CUP0431 | hypothetical protein
CUP0435 | conserved hypothetical protein
CUP0436 | conserved hypothetical protein
CUP0438 | twin-arginine translocation protein TatB, putative
CUP0442 | hypothetical protein
CUP0446 | hypothetical protein
CUP0450 | hypothetical protein
[NAME] | transporter, LysE family
CUP0479 | hypothetical protein
CUP0486 | methyl-accepting chemotaxis protein (tlpA)
CUP0490 | probable fumarate lyase Cj1394 [imported]
CUP0496 | conserved hypothetical protein
[NAME] | hypothetical protein
CUP0519 | hypothetical protein
CUP0520 | hypothetical protein
CUP0521 | hypothetical protein
CUP0522 | hypothetical protein
CUP0523 | hypothetical protein
CUP0524 | phage-related protein
CUP0525 | hypothetical protein
CUP0526 | conserved hypothetical protein
CUP0541 | glycerophosphoryl diester phosphodiesterase VCA0136 [imported] (glpQ-2) [3.1.4.46]
CUP0586 | hypothetical protein
CUP0595 | hypothetical protein
CUP0596 | conserved hypothetical protein
CUP0597 | conserved hypothetical protein
CUP0598 | RepA
CUP0606 | conserved hypothetical protein
CUP0623 | hypothetical protein
[NAME] | conserved hypothetical integral membrane protein (atoE)
CUP0625 | conserved hypothetical integral membrane protein (atoE)
CUP0627 | CoA transferase, subunit A (PigHeart)
CUP0628 | CoA transferase, subunit A (scoA)
CUP0629 | acetyl coenzyme A acetyltransferase (thiolase) (fadA) (b2224)
CUP0630 | acetyl coenzyme A acetyltransferase (thiolase) (fadA) (atoB)
CUP0642 | PARA protein
CUP0643 | hypothetical protein
[NAME] | predicted protein
CUP0645 | hypothetical protein
CUP0646 | RelA/SpoT domain protein
CUP0647 | conserved hypothetical protein
CUP0648 | conserved hypothetical protein
CUP0649 | conserved hypothetical protein
CUP0650 | conserved hypothetical protein
CUP0651 | VirB4 homolog, putative
CUP0652 | hypothetical protein
CUP0667 | conserved hypothetical protein
CUP0680 | flagellar biosynthesis protein FlhF, putative
CUP0686 | conserved hypothetical protein
CUP0687 | conserved hypothetical protein
CUP0694 | hypothetical protein
CUP0713 | hypothetical protein
CUP0740 | hypothetical protein
CUP0741 | hypothetical protein
CUP0742 | hypothetical protein
CUP0745 | NAD(P)H-flavin oxidoreductase, putative
CUP0746 | NAD(P)H-flavin oxidoreductase
CUP0753 | hypothetical protein
CUP0758 | capsular polysaccharide biosynthesis protein, putative
CUP0770 | cytosine specific DNA methyltransferase ([NAME])
CUP0771 | cytosine specific DNA methyltransferase ([NAME])
CUP0772 | hypothetical protein
CUP0773 | hypothetical protein
CUP0780 | hypothetical protein
CUP0798 | adenine specific DNA methyltransferase (mod)
CUP0799 | type III restriction/modification enzyme, methylase subunit
[NAME] | type III restriction enzyme R protein (res) (res)
CUP0801 | hypothetical protein
CUP0802 | hypothetical protein
CUP0806 | hypothetical protein
CUP0812 | probable integral membrane protein Cj1055c [imported]
[NAME] | hypothetical protein
CUP0814 | probable integral membrane protein Cj1055c [imported]
CUP0835 | hypothetical protein
CUP0882 | hypothetical protein
CUP0883 | putative glycosyltransferase
CUP0884 | hypothetical protein
CUP0887 | hypothetical protein
CUP0889 | hypothetical protein
CUP0894 | hypothetical protein
CUP0899 | hypothetical protein
CUP0914 | amino acid adenylation domain protein, putative
CUP0916 | conserved hypothetical protein
CUP0918 | probable acyl carrier protein Cj1308 [imported]-related protein
CUP0922 | hypothetical protein
[NAME] | conserved domain protein
CUP0926 | hypothetical protein
CUP0928 | hypothetical protein
CUP0929 | hypothetical protein
CUP0930 | hypothetical protein
CUP0931 | hypothetical protein
CUP0932 | conserved hypothetical protein
CUP0933 | hypothetical protein
CUP0934 | hypothetical protein
CUP0935 | hypothetical protein
CUP0936 | hypothetical protein
CUP0937 | hypothetical protein
CUP0938 | hypothetical protein
CUP0939 | hypothetical protein
CUP0940 | conserved hypothetical protein
CUP0941 | hypothetical protein
CUP0942 | hypothetical protein
CUP0943 | hypothetical protein
CUP0944 | hypothetical protein
CUP0945 | C-5 cytosine-specific DNA methylase
CUP0946 | hypothetical protein
CUP0947 | hypothetical protein
CUP0948 | conserved domain protein
CUP0949 | hypothetical protein
[NAME] | phage uncharacterized protein, putative
CUP0951 | hypothetical protein
CUP0952 | hypothetical protein
CUP0953 | conserved hypothetical protein
[NAME] | conserved hypothetical protein
CUP0955 | conserved hypothetical protein
[NAME] | conserved hypothetical protein
CUP0957 | hypothetical protein
CUP0958 | hypothetical protein
CUP0959 | hypothetical protein
[NAME] | hypothetical protein
CUP0961 | hypothetical protein
[NAME] | DNA primase, putative
CUP0963 | hypothetical protein
CUP0964 | hypothetical protein
CUP0965 | site-specific recombinase, phage integrase family, putative
CUP0966 | hypothetical protein
CUP0967 | hypothetical protein
CUP0968 | hypothetical protein
[NAME] | hypothetical protein
CUP0970 | hypothetical protein
CUP0971 | hypothetical protein
CUP0972 | hypothetical protein
CUP0973 | hypothetical protein
CUP0974 | hypothetical protein
CUP0975 | hypothetical protein
CUP0976 | hypothetical protein
CUP0977 | conserved hypothetical protein
[NAME] | conserved hypothetical protein
CUP0987 | transcriptional regulator, [NAME] family, putative
CUP0988 | hypothetical protein
CUP0989 | fibronectin/fibrinogen-binding protein, putative
CUP0990 | hypothetical protein
CUP0991 | hypothetical protein
CUP0992 | hypothetical protein
CUP0993 | hypothetical protein
CUP0994 | hypothetical protein
CUP0995 | conserved hypothetical protein
CUP0996 | conserved hypothetical protein
CUP1004 | type I restriction-modification system S subunit, putative
CUP1005 | conserved hypothetical protein
CUP1006 | type I restriction-modification system M subunit
CUP1007 | type I restriction-modification system, R subunit (R.EcoAI)
CUP1010 | homoserine dehydrogenase [1.1.1.3]
CUP1011 | homoserine dehydrogenase [1.1.1.3]
CUP1020 | [NAME], putative
CUP1058 | type IIS restriction enzyme R protein (MBOIIR)
CUP1059 | type IIS restriction enzyme R protein (MBOIIR), putative
CUP1061 | type IIS restriction enzyme M2 protein (mod)
CUP1062 | type IIS restriction enzyme M2 protein (mod)
CUP1063 | conserved hypothetical protein
CUP1074 | type IIS restriction enzyme
CUP1081 | hypothetical protein
CUP1112 | conserved hypothetical protein
CUP1118 | shikimate kinase [imported] [2.7.1.71]
CUP1119 | shikimate kinase VC2629 [imported] (aroK) [2.7.1.71]
CUP1120 | HNH endonuclease domain protein
CUP1121 | adenine specific DNA methyltransferase (hpaim)
CUP1124 | methyl-accepting chemotaxis protein (tlpA)
CUP1137 | capsular polysaccharide biosynthesis protein, putative
CUP1148 | hypothetical protein
CUP1152 | iron(III) ABC transporter, periplasmic iron-binding protein, putative
CUP1153 | iron(III) ABC transporter, periplasmic iron-binding protein, putative
CUP1154 | probable hemin ABC transporter, permease protein VCA0914 [imported], putative
CUP1155 | hemin ABC transporter, ATP-binding protein
CUP1156 | pseudoazurin
CUP1157 | conserved hypothetical protein
CUP1168 | hypothetical protein
CUP1169 | hypothetical protein
CUP1170 | ABC transporter tungsten-binding protein
CUP1175 | conserved hypothetical protein
CUP1184 | hypothetical protein
CUP1186 | conserved hypothetical protein
CUP1188 | hypothetical protein
[NAME] | hypothetical protein
CUP1190 | hypothetical protein
CUP1199 | hypothetical protein
CUP1200 | [NAME], putative
CUP1202 | membrane protein, putative
CUP1235 | conserved hypothetical protein
CUP1236 | conserved hypothetical protein
CUP1245 | conserved hypothetical protein
CUP1246 | hypothetical protein
CUP1247 | conserved hypothetical protein
CUP1254 | conserved hypothetical protein
CUP1255 | GDP-fucose synthetase (fcl)
CUP1256 | dTDP-4-dehydrorhamnose 3,5-epimerase
CUP1257 | GDP-fucose synthetase (fcl)
CUP1259 | conserved hypothetical protein
CUP1260 | conserved hypothetical protein
CUP1262 | WbdK
CUP1263 | Glycosyl transferase family 8 family
CUP1264 | conserved hypothetical protein
CUP1265 | conserved hypothetical protein
CUP1266 | glycosyl transferase CpsJ (V)
CUP1270 | glycosyltransferase
CUP1272 | hypothetical protein
CUP1273 | hypothetical protein
CUP1274 | hypothetical protein
CUP1275 | acylneuraminate cytidylyltransferase, putative
CUP1276 | 3-deoxy-D-manno-octulosonate cytidylyltransferase
CUP1277 | conserved domain protein
CUP1278 | 443aa long hypothetical amidophosphoribosyltransferase, putative
CUP1279 | hypothetical protein
[NAME] | 4-hydroxy-2-ketovalerate aldolase, putative
CUP1283 | cytosine specific DNA methyltransferase (BSP6IM)
CUP1284 | conserved hypothetical protein
CUP1309 | hypothetical protein
CUP1320 | conserved hypothetical protein
CUP1321 | conserved hypothetical protein
[NAME] | capsule polysaccharide biosynthesis protein
CUP1342 | quinone-reactive Ni/Fe hydrogenase, small subunit precursor
CUP1343 | ferrous iron transport protein B (feoB)
CUP1355 | hypothetical protein
CUP1356 | hypothetical protein
CUP1357 | probable periplasmic protein Cj0057 [imported]
CUP1358 | probable periplasmic protein Cj0057 [imported]
CUP1359 | probable periplasmic protein Cj0058 [imported]
CUP1361 | conserved hypothetical protein
CUP1362 | conserved hypothetical protein
CUP1363 | hypothetical protein
CUP1364 | hypothetical protein
CUP1370 | conserved hypothetical protein
CUP1378 | hypothetical protein
[NAME] | type I restriction-modification system, M subunit (hsdM) [2.1.1.-]
CUP1392 | type I restriction enzyme R protein (hsdR) (hsdR_2)
CUP1393 | anti-codon nuclease masking agent (prrB) (hsdS_4)
CUP1432 | conserved hypothetical protein
CUP1436 | radical SAM enzyme, Cfr family
CUP1437 | hypothetical protein
[NAME] | putative type II restriction enzyme
CUP1439 | m4C-methyltransferase, putative
CUP1440 | hypothetical protein
CUP1441 | hypothetical protein
CUP1442 | hypothetical protein
CUP1443 | hypothetical protein
CUP1444 | hypothetical protein
CUP1445 | hypothetical protein
CUP1446 | hypothetical protein
CUP1447 | hypothetical protein
[NAME] | DNA helicase
CUP1449 | oxidoreductase, aldo/keto reductase family
CUP1450 | conserved hypothetical protein
CUP1451 | conserved hypothetical protein
CUP1452 | sodium:solute symporter family protein
CUP1453 | sodium:solute symporter family protein
[NAME] | sodium:solute symporter family protein
CUP1455 | hypothetical protein
CUP1457 | methyltransferase, [NAME] family subfamily
CUP1458 | hypothetical protein
[NAME] | hypothetical protein
CUP1466 | conserved hypothetical protein
CUP1467 | conserved hypothetical protein
CUP1468 | adenine/cytosine DNA methyltransferase
CUP1469 | hypothetical protein
CUP1473 | hypothetical protein
CUP1474 | cytosine specific DNA methyltransferase ([NAME])
CUP1476 | hypothetical protein
CUP1477 | putative type II DNA modification enzyme (methyltransferase)
CUP1481 | hypothetical protein
CUP1485 | hypothetical protein
CUP1486 | hypothetical protein
CUP1487 | hypothetical protein
CUP1489 | ulcer associated adenine specific DNA methyltransferase
CUP1490 | site-specific DNA-methyltransferase (cytosine-specific) (adenine-specifi)
CUP1491 | conserved hypothetical protein
CUP1496 | hypothetical protein
CUP1497 | hypothetical protein
CUP1498 | Protein of unknown function (DUF497) superfamily
CUP1499 | conserved hypothetical protein
CUP1500 | conserved hypothetical protein
CUP1501 | hypothetical protein
CUP1502 | hypothetical protein
CUP1503 | hypothetical protein
[NAME] | hypothetical protein
CUP1506 | hypothetical protein
[NAME] | hypothetical protein
CUP1510 | LysE/YggA family protein VC0481 [imported]
CUP1511 | transporter, LysE family
CUP1518 | hypothetical protein
CUP1519 | hypothetical protein
CUP1520 | hypothetical protein
CUP1521 | hypothetical protein
CUP1522 | CBS domain protein
CUP1526 | hypothetical protein
CUP1538 | hypothetical protein
CUP1540 | conserved hypothetical protein
CUP1546 | conserved hypothetical protein
CUP1548 | hypothetical protein
CUP1549 | hypothetical protein
CUP1550 | conserved hypothetical protein
CUP1551 | hypothetical protein
CUP1552 | hypothetical protein
CUP1553 | hypothetical protein
CUP1554 | [NAME], putative
CUP1555 | conserved hypothetical protein
CUP1567 | hypothetical protein
CUP1568 | hypothetical protein
CUP1569 | hypothetical protein
CUP1577 | adenine specific DNA methyltransferase (mod) (mod_1)
[NAME] | hypothetical protein
CUP1584 | hypothetical protein
CUP1585 | hypothetical protein
CUP1586 | DNA helicase, putative
CUP1587 | hypothetical protein
CUP1588 | hypothetical protein
CUP1589 | hypothetical protein
[NAME] | conserved hypothetical protein
CUP1591 | hypothetical protein
CUP1592 | conserved hypothetical protein
CUP1597 | membrane protein, putative
CUP1603 | hypothetical protein
CUP1621 | conserved hypothetical protein
CUP1637 | hypothetical protein
CUP1638 | conserved hypothetical protein
[NAME] | hypothetical protein
CUP1640 | hypothetical protein
CUP1644 | conserved hypothetical protein
CUP1651 | conserved hypothetical protein
CUP1661 | ulcer associated adenine specific DNA methyltransferase
CUP1662 | hypothetical protein
[NAME] | hypothetical protein
CUP1664 | hypothetical protein
CUP1665 | type II DNA modification methyltransferase
CUP1674 | [NAME], subtilase family
CUP1680 | hypothetical protein
CUP1681 | hypothetical protein
CUP1685 | oxidoreductase, short-chain dehydrogenase/reductase family, putative
CUP1686 | conserved hypothetical protein
CUP1687 | conserved hypothetical protein
CUP1688 | probable transcription regulator Cj0480c [imported]
CUP1689 | probable transcription regulator Cj0480c [imported]
CUP1705 | conserved hypothetical protein
CUP1706 | hypothetical protein
CUP1707 | lipooligosaccharide 5G8 epitope biosynthesis-associated protein (lex2B)
CUP1712 | hypothetical protein
CUP1726 | probable periplasmic protein Cj0659c [imported], putative
CUP1727 | probable transmembrane protein Cj0660c [imported], putative
CUP1731 | Type I restriction modification DNA specificity domain protein (hsdS)
CUP1732 | restriction and modification enzyme CjeI
CUP1734 | restriction modification enzyme Cj1051c [imported]
CUP1735 | hypothetical protein
CUP1739 | protein containing aminopeptidase domain [imported]
CUP1744 | type I restriction-modification system, M subunit, putative
CUP1745 | putative type I specificity subunit HsdS
[NAME] | Type I restriction modification DNA specificity domain, putative
CUP1747 | conserved hypothetical protein
CUP1748 | Polysaccharide deacetylase family
CUP1761 | conserved hypothetical protein
CUP1764 | TfoX domain protein, putative
CUP1769 | adenine specific DNA methyltransferase (HINFIM)
CUP1770 | hypothetical protein
CUP1779 | hypothetical protein
CUP1780 | hypothetical protein
CUP1783 | cytochrome c oxidase subunit 1
CUP1797 | hypothetical protein
CUP1798 | hypothetical protein
CUP1799 | hypothetical protein
CUP1801 | hypothetical protein
CUP1824 | probable membrane protein Cj0080 [imported]
CUP1825 | cytolethal distending toxin A (cdtA)
CUP1828 | hypothetical protein
CUP1829 | conserved hypothetical protein
CUP1831 | hypothetical protein
CUP1832 | hypothetical protein
CUP1833 | hypothetical protein
CUP1834 | hypothetical protein
C. coli RM2228:
CCO0001 | 50S ribosomal protein L3
CCO0008 | hypothetical protein
CCO0025 | conserved hypothetical protein
CCO0026 | YeeE/[NAME] family protein family
[NAME] | hypothetical protein
CCO0035 | Tat (twin-arginine translocation) pathway signal sequence domain protein
CCO0036 | Chain B, Stru
CCO0037 | Chain B, Stru
CCO0038 | hypothetical protein
CCO0039 | sodium:solute symporter family protein
CCO0040 | Protein of unknown function, DUF485 superfamily
CCO0048 | hypothetical protein
CCO0064 | hypothetical protein
CCO0067 | conserved hypothetical protein
CCO0068 | conserved hypothetical protein
CCO0069 | conserved hypothetical protein
CCO0072 | probable integral membrane protein Cj0033 [imported]
CCO0073 | probable integral membrane protein Cj0033 [imported]
CCO0074 | conserved hypothetical protein
CCO0092 | hypothetical protein
CCO0093 | probable periplasmic protein Cj0057 [imported]
CCO0094 | hypothetical protein
CCO0095 | probable periplasmic protein Cj0057 [imported]
CCO0096 | conserved hypothetical protein
CCO0097 | hypothetical protein
CCO0098 | hypothetical protein
CCO0099 | probable periplasmic protein Cj0057 [imported]
CCO0102 | hypothetical protein
CCO0103 | probable periplasmic protein Cj0057 [imported]
CCO0105 | hypothetical protein
CCO0106 | hypothetical protein
CCO0107 | conserved hypothetical protein
CCO0108 | conserved hypothetical protein
CCO0109 | hypothetical protein
[NAME] | probable periplasmic protein Cj0057 [imported]
CCO0111 | conserved hypothetical protein
[NAME] | hypothetical protein
CCO0145 | probable periplasmic protein Cj0093 [imported], putative
CCO0159 | Na+/H+ antiporter Cj1654c [imported]
CCO0160 | Na+/H+ antiporter Cj1654c [imported]
CCO0181 | filamentous hemagglutinin, intein-containing, putative
[NAME] | hemagglutinin/hemolysin-related protein
CCO0183 | Hemolysin, putative
CCO0184 | Hemolysin, putative
CCO0185 | hypothetical protein
CCO0186 | hypothetical protein
[NAME] | filamentous hemagglutinin 1, putative
CCO0188 | hypothetical protein
CCO0189 | hypothetical protein
CCO0190 | hemolysin activation protein HecB, putative
CCO0196 | hypothetical protein
CCO0203 | hypothetical protein
CCO0204 | hypothetical protein
CCO0212 | conserved hypothetical protein
CCO0213 | methyl-accepting chemotaxis protein, putative
CCO0216 | conserved hypothetical protein
CCO0217 | conserved hypothetical protein
CCO0231 | hypothetical protein
CCO0249 | conserved hypothetical protein
CCO0250 | hypothetical protein
[NAME] | [NAME], putative
[NAME] | probable integral membrane protein Cj0564 [imported]-related protein
CCO0253 | hypothetical protein
CCO0254 | hypothetical protein
CCO0257 | glcG protein
CCO0281 | hypothetical protein
CCO0284 | hypothetical protein
CCO0291 | Hypothetical cytosolic protein, putative
CCO0292 | conserved hypothetical protein
CCO0320 | conserved hypothetical protein
CCO0321 | conserved hypothetical protein
CCO0332 | TM2 domain protein, putative
CCO0347 | hypothetical protein
CCO0348 | prpE protein VC1340 [imported]
[NAME] | carboxyphosphonoenolpyruvate phosphonomutase VC1336 [imported]
CCO0350 | 2-methylcitrate synthase (citZ)
CCO0352 | ID867
[NAME] | membrane protein [imported], putative
CCO0354 | hypothetical protein
CCO0355 | probable periplasmic protein Cj0413 [imported], putative
CCO0356 | hypothetical protein
CCO0371 | phosphoglycerate transporter protein pgtP [imported]
CCO0372 | phosphoglycerate transporter protein pgtP [imported]
CCO0373 | phosphoglycerate transporter protein pgtP [imported]
CCO0374 | phosphoglycerate transporter protein pgtP [imported]
CCO0375 | Transporter protein
[NAME] | [NAME], putative
CCO0383 | conserved hypothetical protein
CCO0384 | Helix-turn-helix domain protein
CCO0411 | tricarboxylate transport protein TctA, putative
CCO0412 | tricarboxylate transport protein TctB, putative
CCO0413 | tricarboxylate transport protein TctC, putative
CCO0447 | phosphoglucosamine mutase
CCO0448 | PUTATIVE PHOSPHOSUGAR ISOMERASE PROTEIN (mrsA)
CCO0449 | phosphoglucosamine mutase (mrsA)
CCO0509 | [NAME], putative
CCO0510 | integral membrane protein
CCO0511 | integral membrane protein
CCO0533 | membrane protein [imported], putative
[NAME] | conserved hypothetical protein
CCO0535 | L-carnitine dehydratase (caiB-2)
CCO0536 | citE, putative
CCO0537 | iron-regulated outer membrane virulence protein, putative
CCO0557 | probable transcription regulator Cj0466 [imported]
[NAME] | glutamine ABC transporter, permease protein (glnP) (glnP)
CCO0561 | conserved hypothetical protein
CCO0575 | DNA-directed [NAME] polymerase, beta subunit (rpoB)
CCO0576 | DNA-directed RNA polymerase beta chain , fragment
CCO0592 | conserved hypothetical protein
CCO0599 | ammonium transporter (amt)
CCO0601 | conserved hypothetical protein
[NAME] | oxidoreductase, Gfo/Idh/MocA family, putative
CCO0603 | B. subtilis YxjH and YxjG proteins homolog lmo0845 [imported]
CCO0610 | probable secreted proteinase Cj0511 [imported]
CCO0611 | protease (prc)
CCO0650 | probable integral membrane protein Cj0557c [imported]
[NAME] | probable integral membrane protein Cj0557c [imported]
CCO0654 | hypothetical protein
CCO0658 | conserved hypothetical protein
[NAME] | probable periplasmic protein Cj1275c [imported]
CCO0667 | probable periplasmic protein Cj1275c [imported]
CCO0700 | conserved hypothetical protein
CCO0734 | probable periplasmic protein Cj0659c [imported], putative
CCO0751 | hypothetical protein
CCO0764 | hypothetical protein
CCO0804 | hypothetical protein
CCO0814 | hypothetical protein
CCO0815 | hypothetical protein
CCO0819 | serine O-acetyltransferase
CCO0834 | accessory colonization factor [NAME] [imported], putative
CCO0835 | accessory colonization factor [NAME] [imported], putative
CCO0836 | major antigenic peptide PEB2 Cj0778 [imported]
CCO0847 | transporter, LysE family
CCO0874 | conserved hypothetical protein
CCO0877 | hypothetical protein
CCO0878 | probable lipoprotein Cj0818 [imported]-related protein
CCO0917 | ferric uptake regulation protein, putative
CCO0918 | hypothetical protein
CCO0919 | periplasmic solute binding protein for ABC transport system Cj0143c [imported] (fimA)
CCO0920 | adhesion protein, putative
CCO0921 | membrane protein, putative
CCO0922 | hypothetical protein
CCO0923 | hypothetical protein
CCO0924 | hypothetical protein
CCO0925 | hypothetical protein
CCO0926 | hypothetical protein
CCO0929 | hypothetical protein
CCO0948 | probable lipoprotein Cj0946 [imported]
CCO0949 | probable lipoprotein Cj0946 [imported]
CCO0955 | inner membrane protein, putative
CCO0968 | conserved hypothetical protein
CCO0970 | hypothetical protein
CCO1004 | sodium:alanine symporter family protein
CCO1005 | sodium/alanine symporter VC2356 [imported]
CCO1009 | probable periplasmic protein Cj0908 [imported]
CCO1016 | probable hydrolase Cj0915 [imported]
CCO1034 | oxaloacetate decarboxylase, alpha subunit (oadA) [6.4.1.1]
CCO1035 | probable pyruvate carboxylase (EC 6.4.1.1) B chain Cj0933c [imported] [6.4.1.1]
CCO1040 | conserved hypothetical protein
CCO1041 | conserved hypothetical protein
CCO1075 | conserved hypothetical protein
CCO1076 | hypothetical protein
CCO1077 | hypothetical protein
CCO1078 | hypothetical protein
CCO1084 | branched chain amino acid ABC transporter, permease protein (livH)
CCO1123 | hypothetical protein
[NAME] | hypothetical protein
CCO1125 | VgrG protein, putative
CCO1131 | hypothetical protein
CCO1135 | nitroreductase family protein [imported]
CCO1136 | nitroreductase Cj1066 [imported]
CCO1140 | LapB
CCO1141 | LapB
CCO1142 | conserved hypothetical protein
CCO1143 | transporter, MFS superfamily (transport)
CCO1170 | oxidoreductase, short-chain dehydrogenase/reductase family, putative [1.1.1.5]
CCO1171 | hypothetical protein
CCO1173 | hypothetical protein
CCO1214 | conserved hypothetical protein
CCO1215 | bifunctional alpha-2,3/-2,8-sialyltransferase
CCO1216 | hypothetical protein
CCO1217 | sialyl transferase
CCO1218 | conserved hypothetical protein
CCO1229 | transcription termination factor Cj1156 [imported]
CCO1254 | ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (fbcH) (petB)
CCO1255 | ubiquinol cytochrome c oxidoreductase, cytochrome b subunit (fbcH) (petB) [1.10.2.2]
CCO1270 | hypothetical protein
CCO1271 | D-methionine-binding lipoprotein MetQ
CCO1277 | hypothetical protein
CCO1278 | hydrolase, carbon-nitrogen family
CCO1279 | polysaccharide deacetylase family protein
CCO1280 | conserved hypothetical protein
CCO1281 | cobalamin synthesis protein/P47K family protein
CCO1298 | sodium/pantothenate symporter [imported], putative
CCO1299 | hypothetical protein
CCO1304 | conserved hypothetical protein
CCO1306 | cytochrome c family protein (Nmr,36Structure)
CCO1307 | conserved hypothetical protein
[NAME] | putative periplasmic protein
CCO1309 | putative periplasmic protein
[NAME] | putative periplasmic protein
CCO1311 | hypothetical protein
CCO1312 | filamentous haemagglutinin domain protein
CCO1325 | hypothetical protein
CCO1326 | hypothetical protein
CCO1331 | hypothetical protein
CCO1339 | ISCco1, transposase
CCO1340 | [NAME] [imported], putative
CCO1342 | hypothetical protein
CCO1349 | membrane protein, putative
CCO1367 | DNA ligase (NAD) (EC 6.5.1.2) Cj0586 [imported] (containsBRCTdom) [6.5.1.2]
CCO1368 | DNA ligase (NAD) (EC 6.5.1.2) Cj0586 [imported] [6.5.1.2]
CCO1369 | conserved domain protein
CCO1370 | ABC transporter ATP-binding protein
CCO1400 | conserved hypothetical protein
CCO1401 | conserved hypothetical protein
CCO1409 | conserved hypothetical protein
CCO1415 | conserved hypothetical protein
CCO1416 | conserved hypothetical protein
CCO1417 | conserved hypothetical protein
CCO1419 | conserved hypothetical protein
CCO1429 | conserved hypothetical protein
CCO1432 | hypothetical protein
CCO1446 | conserved hypothetical protein
CCO1447 | conserved hypothetical protein
CCO1467 | toxin-like outer membrane protein, putative
CCO1468 | vacuolating cytotoxin precursor, putative
CCO1469 | hypothetical protein
CCO1484 | integral membrane protein, putative
CCO1497 | conserved hypothetical protein
CCO1498 | conserved hypothetical protein
CCO1500 | C4-dicarboxylate anaerobic carrier, putative
CCO1501 | C4-dicarboxylate anaerobic carrier, putative
CCO1514 | hypothetical protein
[NAME] | haloacid dehalogenase-like hydrolase, putative
CCO1529 | Domain of unknown function (DUF386) superfamily
[NAME] | Putative cyclase superfamily
CCO1531 | UDP-glucose 4-epimerase, putative
CCO1532 | D-3-phosphoglycerate dehydrogenase (serA) [1.1.1.95]
CCO1533 | 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase, putative
[NAME] | acylneuraminate cytidylyltransferase, putative
CCO1535 | glycosyl transferase, group 2 family protein domain protein
CCO1536 | hypothetical protein
CCO1537 | DcbE, putative
CCO1538 | alpha-2,3-sialyltransferase
CCO1539 | adenylylsulfate [NAME] (cysC) [2.7.1.25]
CCO1540 | transporter, sodium/sulfate symporter family, putative
CCO1541 | sulfate adenylyltransferase, subunit 1/adenylylsulfate kinase
CCO1542 | sulfate adenylyltransferase, subunit 2
CCO1543 | 3'(2'),5'-bisphosphate nucleotidase (cysQ) [3.1.3.7]
CCO1544 | alpha-2,3-sialyltransferase
CCO1545 | ISCCo1, transposase
CCO1546 | Glycosyl transferase family 8 family
CCO1547 | capsular polysaccharide synthesis-C (ggaB)
CCO1548 | minor teichoic acids biosynthesis protein ggab (ggaB)
[NAME] | hypothetical protein
CCO1563 | [NAME], putative
CCO1575 | membrane protein, putative
CCO1587 | DnaJ-related protein
CCO1588 | conserved hypothetical protein
CCO1610 | hypothetical protein
CCO1627 | AgrC, putative
CCO1628 | hypothetical protein
CCO1629 | hypothetical protein
CCO1637 | hypothetical protein
CCO1638 | ISCco1, transposase orfB
CCO1639 | ISCco1, transposase orfA
CCO1640 | hypothetical protein
CCO1648 | hypothetical protein
CCO1649 | hypothetical protein
CCO1654 | conserved hypothetical protein
CCO1656 | modulator of drug activity (mda66) (mdaB)
CCO1657 | modulator of drug activity (mda66) (mdaB)
CCO1662 | conserved hypothetical protein
CCO1663 | Helicase conserved C-terminal domain protein
CCO1667 | conserved hypothetical protein
CCO1669 | NADP(H) oxidoreductase CC0205 [imported]
CCO1670 | hypothetical protein
CCO1671 | catalase-like protein
CCO1675 | arsenite efflux transporter (arsC)
CCO1676 | arsenite efflux transporter (arsC)
CCO1688 | hypothetical protein
CCO1689 | hypothetical protein
CCO1694 | major facilitator family transporter, putative
CCO1707 | integral membrane protein, putative
CCO1708 | integral membrane protein, putative
CCO1710 | hypothetical protein
[NAME] | hypothetical protein
CCO1740 | hypothetical protein
CCO1757 | conserved hypothetical protein
CCO1758 | conserved hypothetical protein
CCO1784 | hypothetical protein
CCO1785 | hypothetical protein
CCO1786 | hypothetical protein
CCO1801 | hypothetical protein
Table S4.  Column 1 indicates the gene symbol or locus name_Genbank protein accession number of the CDS, while column 2 shows the annotation.