Spreadsheet: 0ab25a88-6875-4f4d-9525-b0bbfcc5f52d
Sheet: Full1

Supplementary Table 1.  SNP name, annotation, length of the contig (Contig Length), number of true SNPs inside the contig (SNPs Contig), SNP position, external PCR primer sequences (F = forward, R = Reverse), tailed extension primer (showing tails in lower case) and variants detected for each tested marker are showed. Unfeasible SNPs are indicated in red colour.
SNP Name | Annotation | Contig Length | SNPs_Contig | SNP Position | Forward PCR-Primer | Reverse PCR-primer | Extension primer | Variants | [NAME]
SmaSNP_211 | Cyclin-dependent kinase 2 interacting protein | 1894 | 2 | 1236 | ACGTTGGATGGCTAGGAGCTGCTTTTCAAC | ACGTTGGATGCTCAGCTCCAGAGAAAATTG | gACCGCAAGATATGAACTGGGTTG | A/T | 1
SmaSNP_212 | Zona pellucida sperm-binding protein 3 | 1404 | 16 | 774 | ACGTTGGATGCCCATATGGGCATGAAAGAG | ACGTTGGATGGCTCAATGAGCAATTGACGG | GGGGACGACGTTTGTCTT | A/G | 6
SmaSNP_213 | Proteasome activator subunit 3 | 2410 | 2 | 389 | ACGTTGGATGCGGAGATAAACCTAACGGTG | ACGTTGGATGTTTTGGTCATTTTGCGCGTC | cGCTCTCAAACCTGAATG | A/G | 3
SmaSNP_214 | Signal sequence receptor, beta | 1180 | 2 | 421 | ACGTTGGATGGTCAAATGGGACAGGATAGC | ACGTTGGATGAAAGTAACCAGCCTTCAGGG | GGACAGGATAGCACCTGCCAGCAATG | C/T | 4
SmaSNP_215 | Mitotic specific cyclin-B1 | 2218 | 16 | 903 | ACGTTGGATGCCATCACAGGAAGCAAACTC | ACGTTGGATGCTCTTGGATGCTGGAGACTG | tGCAAACTCTCTGCTGTGTA | C/T | 2
SmaSNP_216 | Pre-mRNA branch site protein p14 | 930 | 5 | 724 | ACGTTGGATGAGGAAATAAAGAACCGCAGG | ACGTTGGATGGGAATTCTTCAGCCACAAAC | cccctAACCGCAGGCAAATACTTTG | A/T | 1
SmaSNP_217 | Zona Pellucida protein C1 | 1204 | 5 | 811 | ACGTTGGATGCAAGTTTTCTGTCGACGTAG | ACGTTGGATGGTGTTGTCAAGCCCAAAAGG | ggCTGTCGACGTAGAGGTGTAT | A/G | 4
SmaSNP_218 | Mitochondrial ribosomal protein S18A | 1341 | 1 | 980 | ACGTTGGATGAACTTGTCGTTCGGAGGAAG | ACGTTGGATGTGTGTTGCGGTCTGTGTGGA | GAAGCCCGCGTTGGTTCCTAATCT | G/T | 1
SmaSNP_219 | U3 small nucleolar ribonucleoprotein protein IMP3 | 1339 | 2 | 891 | ACGTTGGATGTCCAGGCCTTTTGCTTTTTC | ACGTTGGATGTTTTGATGATCCCCCGTCAG | ccTTTTCAATGAACACTTCTCTT | G/T | 5
SmaSNP_220 | Coatomer subunit epsilon isoform 1 | 1295 | 1 | 923 | ACGTTGGATGGAAAGATGCACACAGATCCC | ACGTTGGATGTACTGCAACGCTAGTCTGTC | CACAGATCCCACCCATT | C/T | 1
SmaSNP_221 | Zona pellucida protein Y1 | 2619 | 2 | 2246 | ACGTTGGATGCCAGAGGATATGTACACTGC | ACGTTGGATGGCAAGAAGTTGCGTAGTTGG | CCCCATCAATCTCATTGC | A/G | 3
SmaSNP_222 | Signal recognition particle 14 kDa protein | 1490 | 6 | 1010 | ACGTTGGATGAATGGGTAGAAATGCGGGTG | ACGTTGGATGGACCGTGGTTACCTTCACTG | taCCATTTCCTCCTCTGATCG | G/T | 4
SmaSNP_223 | Epithelial cell adhesion protein | 1695 | 13 | 1084 | ACGTTGGATGTCGTAGATGCCGTCGTTGTC | [NAME] | CTCCTCTGGCTTTCCGCCTACTGAACG | A/T | 4
SmaSNP_224 | Transcription initiation factor TFIID subunit D11 | 1441 | 17 | 394 | ACGTTGGATGCGCAAGGATCAAAGTTGGTG | ACGTTGGATGCCTCAGAGGGTTTAGGGTTC | TCATCCGAGAGGACGAACTCTGC | C/G | 4
SmaSNP_225 | Acidic ribosomal protein P1 | 961 | 2 | 471 | ACGTTGGATGAGACTTCACTCCTCCCTCAA | ACGTTGGATGGATCACAACGATGGATGCAG | gAATATTAAATTCAGTCAGGGGAA | A/G | 5
SmaSNP_226 | Alcohol dehydrogenase Class-3 | 1464 | 8 | 1130 | ACGTTGGATGTTCGGAGGCTGGAAGAGTGT | ACGTTGGATGACTCATCCACCTTCAGCTTC | cGGCTGGAAGAGTGTGGAGAG | C/T | 1
SmaSNP_227 | Thioredoxin protein 4A | 1454 | 9 | 557 | ACGTTGGATGTTTTCGGCGATGCTGTAGAG | ACGTTGGATGAGTGCTCGTGATCCGCTTC | TAGAGAACCTCGTCCAT | A/G | 3
SmaSNP_228 | Novel protein similar to vertebrate THAP domain containing 4 (THAP4) | 2449 | 4 | 482 | ACGTTGGATGTCTGGAATGACAAAGGTTGC | ACGTTGGATGGTTGTATAACTGTAGAGCTG | GGTTGCTAAAATAGGAGTCAGAT | A/G | 1
SmaSNP_229 | Tumor suppressor candidate 2 | 1211 | 3 | 958 | ACGTTGGATGCCGTCTTAACACACATTCAC | ACGTTGGATGTGAGACGTAGAGCGTTAGAC | CACACATGTACACATACAAAGACA | A/G | 3
SmaSNP_230 | Optic atrophy 3 protein | 1243 | 1 | 675 | ACGTTGGATGGTTCAGCCACATGAATAGCC | ACGTTGGATGCTCATGTCCACCTCTTTCAC | CCTGATGACTTCACACATTGTCC | C/T | 2
[NAME] | RNA 3'-terminal phosphate cyclase | 1293 | 3 | 508 | ACGTTGGATGTTCTTCATCAGAGGAAGGGC | ACGTTGGATGAAGAACTCTCTGAAGGCCAC | gACAGGTCGACAGTCGGGTCCAC | A/C | 4
SmaSNP_232 | RAD1 homolog | 3598 | 2 | 1602 | ACGTTGGATGAATCACTCCACCTCCTCGTC | ACGTTGGATGCAGTACCTGGTCAGGAACGA | CTCGTCGGGACAACAGTAATA | A/G | 1
SmaSNP_233 | Ubiquitin carrier protein | 1640 | 7 | 413 | ACGTTGGATGGTGTATTCTTCTGCCAGGTC | ACGTTGGATGATGCCAAGTGATCCAGTCTC | ATGCTCTGGCTGAGGGTTGTT | G/T | 2
[NAME] | chromatin accessibility complex protein 1 | 1363 | 9 | 659 | ACGTTGGATGTCCAAGACTCTGTGTTGTTG | ACGTTGGATGATGCGGAAGTGGAAGTGAAG | CTCCACCTGATTTCACAT | A/G | 4
SmaSNP_235 | Nucleolar protein 16 | 1146 | 3 | 637 | ACGTTGGATGTTCTGCACTCGGAGAGAATC | ACGTTGGATGTTCCTCGACTCGCTCGCTG | ctAGCTCCCTCTACTGGACCGTCGG | A/G | 5
SmaSNP_236 | Isopentenyl-diphosphate Delta-isomerase 1 | 1707 | 3 | 932 | ACGTTGGATGTTGAAGAGGAAGGTCTCTGC | ACGTTGGATGGATGTTGAACAAGGCCAAGC | GCGATGAGGCTGAACCA | C/G | 5
SmaSNP_237 | Ran-specific GTPase-activating protein | 1980 | 14 | 775 | ACGTTGGATGGATTCATAATGCACCTCCAC | ACGTTGGATGGGAGAGGATAATGTAGCCTG | GCACCTCCACCACACCT | G/T | 5
SmaSNP_238 | Forkhead box H1 | 1482 | 2 | 676 | ACGTTGGATGAGGAGCAGACAGTCGAAGC | ACGTTGGATGTCGCATCGGATCTGAACAGC | aCCTCTCCCCTCTCCTGACCCTGCG | A/G | 2
SmaSNP_239 | Stathmin | 1333 | 7 | 241 | ACGTTGGATGTACAGAGAGAAGTCATGTGC | ACGTTGGATGCTAGTTTGCTCCTGCAGGTC | CATATTAATACAAAAGCTAAAATCAG | C/T | 5
SmaSNP_240 | Ubiquinol-cytochrome c reductase core I protein | 1891 | 6 | 1071 | ACGTTGGATGAGGAGAACCTGTGTCACAGC | ACGTTGGATGGTGACAAAGTGAATGCCCAG | CCTTTCACTCCTCATACAG | C/T | 1
SmaSNP_241 | BolA-like protein 3 | 1149 | 5 | 590 | ACGTTGGATGTCCCCTTTGTTCACAGTAGC | ACGTTGGATGACAGGCACACCAACAGTTAC | CAGTATATAAGAGGATATTGTGTT | C/G | 4
[NAME] | Importin alpha protein | 1572 | 4 | 1424 | ACGTTGGATGGCAGGTCAAAGACGCTAAAG | ACGTTGGATGTTTCCATCTCACCGAGCTTC | AAAGTAATTCTGGTCATACTGG | A/G | 5
SmaSNP_243 | ce ceroid-lipofuscinosis neuronal protein 5 | 1713 | 10 | 780 | ACGTTGGATGGGATCTATTACGAGACGTGG | ACGTTGGATGTGGGAGCAGTCGTAAGACTC | CCCCGGCCCCAACGCCACG | G/T | 4
SmaSNP_244 | SSU rRNA; | Psetta maxima (turbot) | 1139 | 4 | 754 | ACGTTGGATGCATCCAGGACTGCTGAAATG | ACGTTGGATGGCATCAGTACCAGATGTCAG | agaacTGAAGCCACGTCCTGCTG | C/T | 1
SmaSNP_245 | Chromobox protein homolog 3 | 1230 | 13 | 118 | ACGTTGGATGTGCGATAGCCCAGGTTTTTG | ACGTTGGATGAAGATGCTGCCTTTACCACG | CGCCAGAGATAAAGAGGTG | G/T | 3
SmaSNP_246 | [NAME] protein 208 | 1781 | 2 | 314 | ACGTTGGATGTGGCTAGATTTATGGCAGCG | ACGTTGGATGATCTACGAGGAGAATGAGGC | aAGCGAATATCGCATTAGCTCC | A/C | 3
[NAME] | Ribosomal protein L18a | 784 | 3 | 274 | ACGTTGGATGTGAGGATCTTCGCCAACAAC | ACGTTGGATGTCTTCATCTTCCTCAGCTGG | gctCCAACAACCATGTTGTGGC | A/C | 5
SmaSNP_248 | Pre-mRNA-processing factor 19 | 2454 | 1 | 1840 | ACGTTGGATGATCTGAGCTAACTTTGCTTC | ACGTTGGATGGCTGCTGTGGTTTCAATGAG | TTGCTTCTTTAGTGTGTTAGTTGTCA | C/T | 1
SmaSNP_249 | Alpha-L-fucosidase | 1476 | 7 | 1136 | ACGTTGGATGTCTGAAACTGGAGGCTGTTC | ACGTTGGATGTTAAGTCCCAAATGCGAGCC | CAGTGAGCCTGAAACACCTC | A/G | 6
SmaSNP_250 | Protein phosphatase 2 (Formerly 2A) | 3328 | 1 | 2340 | ACGTTGGATGAAAGCAGATGGAGCAGCAAG | ACGTTGGATGCTCTGGGAAGATGAGCTATC | aTGTTTGTTTTCACTGAGCTTCCTCCC | A/G | 3
[NAME] | Solute carrier family 25 (Mitochondrial carrier; dicarboxylate transporter), member 10 | 2479 | 2 | 994 | ACGTTGGATGGCGGTGGAATGAATTAAAGG | ACGTTGGATGGCAGTTTAACACCAGATTTC | cccccAAATTTTAACTCGCAAGTGG | A/C | 6
SmaSNP_252 | LON peptidase N-terminal domain and RING finger protein 1 | 2699 | 6 | 1963 | ACGTTGGATGCGAAAGAACGACAATCCACG | ACGTTGGATGGGCACACACAATGGCCAATC | [NAME] | G/T | 3
SmaSNP_253 | IK cytokine | 2073 | 10 | 1235 | ACGTTGGATGAGAGAGAGAGAACGTGAGAG | ACGTTGGATGCCACTCGAGGTTTCTCAAAG | ggCAAGGAGGAGGACATCAA | A/G | 4
SmaSNP_254 | Mki67 (FHA domain) interacting nucleolar phosphoprotein | 1873 | 1 | 697 | ACGTTGGATGAGCAGCTCGAGAAGATGAAG | ACGTTGGATGAAGTCGTATTCGATGCCGTG | tgggCTCCTGCGGAAAGAAAC | A/G | 6
[NAME] | General transcription factor IIIA | 1429 | 44 | 477 | ACGTTGGATGACAGCTGAAAGGCCTCTTGC | ACGTTGGATGCTGTGACAAAAAGTTCACCG | AGCACGTGGTTCTCGAAA | C/T | 3
SmaSNP_256 | Ribonuclease UK114 | 2168 | 5 | 498 | ACGTTGGATGCGTCAACGATGTGTACAAGC | ACGTTGGATGTTCAATCTCGACCAGTCCAC | AAGCAGTTCTTTAGCAGTAGCTATCC | C/T | 1
SmaSNP_257 | Inner centromere protein | 2946 | 11 | 589 | ACGTTGGATGGAGTACACCTGTTGGGAAAG | ACGTTGGATGAGTGATGGAGTACGACTGTG | TGGGAAAGGTGGTGGCCTCAA | A/G | 6
[NAME] | Ubiquitin (Ribosomal protein L40) | 1593 | 2 | 864 | ACGTTGGATGTGTTGTAGTCAGACAGGGTG | ACGTTGGATGTCCAGGATAAGGAAGGCATC | aTTGCTTGCCGGCGAAGATCA | C/T | 1
SmaSNP_259 | Beta-galactoside-binding lectin | 1121 | 2 | 569 | ACGTTGGATGGTCAGCCTTACATGCTTATC | ACGTTGGATGATCTGCACATGTCAACAGGC | tCCTTACATGCTTATCACTTATTTACG | C/T | 3
SmaSNP_260 | Enoyl-Coenzyme A hydratase | 2017 | 1 | 1151 | [NAME] | ACGTTGGATGGGGTAGATGAGTACTGTGTC | CCCACTGGACTCAAATCTAAT | A/T | 5
[NAME] | [NAME] | 2364 | 2 | 1741 | ACGTTGGATGTGCGTGAACCCTGTATGATG | ACGTTGGATGGCCATTGGCTCAATATTGTC | gaTTGTGTGGTCATCTGAAAT | A/G | 5
SmaSNP_262 | DNA-directed [NAME] polymerase I subunit RPA34 | 1689 | 4 | 715 | ACGTTGGATGAACAGCGATTCCACCCCTTC | ACGTTGGATGTTGTAGATGAAGGCCCGAAG | ACCTGCGTGGCAGAAAATGAGGC | A/G | 3
SmaSNP_263 | Epithelial membrane protein 2 | 2051 | 10 | 654 | ACGTTGGATGTCACGTTCATCTCCTCCATC | ACGTTGGATGTTGGAGCGAGCACTAGTGTC | TATTTTGTGCTACGCAAAAAGACAGC | A/G | 3
SmaSNP_264 | Retinol dehydrogenase 3 | 1519 | 3 | 436 | ACGTTGGATGGTAACCTTCTTGCGAGACAC | ACGTTGGATGCTCATCCTCACCTTTCTCAG | TGGACAAGCTGGGCTTCC | C/G | 6
SmaSNP_265 | WD repeat-containing protein 54 | 2791 | 1 | 709 | ACGTTGGATGTTACCCCCTAAGCTCATTCC | [NAME] | accccTTCCAGGCAAATTGCTG | A/G | 1
SmaSNP_266 | tRNA pseudouridine synthase 3 | 1406 | 5 | 804 | ACGTTGGATGAGTACAGCATGGCGGTAGAC | ACGTTGGATGCAGTCTCCTGTTTCCAGTTC | aTGCTGTACGACTGCCACTT | C/T | 1
SmaSNP_267 | Transmembrane protein 167 precursor | 1143 | 2 | 506 | ACGTTGGATGACAGGTCTCCCGTTTTTTAC | ACGTTGGATGGGCATGAACAATACGATCCC | GGTCTCCCGTTTTTTACATTATCTA | G/T | 2
SmaSNP_268 | [NAME] A | 2442 | 13 | 952 | ACGTTGGATGTCAACAGCTCGGCGATTAAG | ACGTTGGATGGCAAGATATCAAGGGTGGAG | gGTTTTTGGCTCCAGCGCTGATA | C/T | 6
SmaSNP_269 | Fish virus induced TRIM protein | 3152 | 23 | 306 | ACGTTGGATGGCTGATTCTCTTCCTGGAAC | ACGTTGGATGTTTCTGCGCCATTTCACCTC | GATGGGTGGAAACAACAGTCGTTC | C/G | 3
SmaSNP_270 | Flotillin-1 | 1679 | 2 | 1547 | ACGTTGGATGCGTACGACTTTCACACTATG | ACGTTGGATGATCTTTTACGTTCCCTAAC | TCAATTTAAAAGATAAACATGCAA | C/G | 5
SmaSNP_271 | NAD(P)H dehydrogenase quinone 1 | 1261 | 7 | 1013 | ACGTTGGATGATCTCACATCACAACTGCGG | ACGTTGGATGAGAGGGCGTGAAGGTAAGG | gggGCCCGAATGCAAGGCCTGCTGGA | A/G | 5
SmaSNP_272 | Tyrosine 3-monooxygenase | 3035 | 3 | 842 | ACGTTGGATGCGTTTAACTCACACCAACAC | ACGTTGGATGCGCTCCCATGTCATTTATCC | AAGAGAAAGTTCTAAACGGA | A/T | 1
SmaSNP_273 | Ubiquitin protein ligase E3 component | 3015 | 3 | 2419 | ACGTTGGATGGCGTAAAGGATGTCATGCAC | ACGTTGGATGTCGTGCATCATCTAGTTGTG | caAAGTTTGATAATTTTGTAATGTTG | C/T | 2
SmaSNP_274 | K13213 matrin 3 | 2406 | 3 | 1871 | ACGTTGGATGGCCACTTCCCACATGATCTG | ACGTTGGATGGGTCAAACAGAAGGACAAAC | TGGTAAAAAATAATATATTCCAAACA | C/G | 6
SmaSNP_275 | Dolichol-phosphate mannosyltransferase | 1308 | 4 | 836 | ACGTTGGATGTATTCAGAAGCAGAGGGAGG | ACGTTGGATGAGCCATATACGCCTCCATTG | gGAAGCAGAGGGAGGCTAACTACGAC | A/G | 2
SmaSNP_276 | DNA-directed [NAME] polymerases i II and III subunit rpabc1 | 1199 | 4 | 877 | ACGTTGGATGGCGATATGGACGATGAAGAG | ACGTTGGATGAGCTGCATGATGGTTTTGCG | [NAME] | A/G | 1
SmaSNP_277 | Syndecan 2 | 3478 | 1 | 2308 | ACGTTGGATGAGGAAATGCCTGTATCCATC | ACGTTGGATGTTTAGTGACATTATTGGGG | CTCAAAGTCAACAAACTCC | A/C | 6
SmaSNP_278 | Peptide methionine sulfoxide reductase | 1593 | 6 | 1015 | ACGTTGGATGTTGGCTTTTAGATCGGAAGG | ACGTTGGATGCGATGCGACAAAAACACGAG | gTGGCTTTTAGATCGGAAGGAATCAC | C/G | 3
SmaSNP_279 | Methyltransferase-like protein 21D | 1789 | 12 | 209 | ACGTTGGATGGCTTCACTTTTAAGGCACGG | ACGTTGGATGTTCCTGTCGCGGCCAACAT | aTCGACTTCTCTCACAAAATATTC | G/T | 4
SmaSNP_280 | RNA-binding protein 8A | 1144 | 9 | 181 | ACGTTGGATGATCCATAGGAAAGTCCTCGC | ACGTTGGATGGTATCAACGCAGAGTACGGG | CCCGCTTCGTGAAGATCCAG | G/T | 4
SmaSNP_281 | Phosphatidylinositol transfer protein beta isoform-like isoform 2 | 3870 | 1 | 789 | ACGTTGGATGAGCTGTACATTCGCAAGCAC | ACGTTGGATGAAGCAGAGCAAACTGTCCAC | CAAGCACAGATGAGGTA | C/T | 1
SmaSNP_282 | Zona pellucida protein C | 2096 | 2 | 596 | ACGTTGGATGAAGGCTAACGACGTCATATC | ACGTTGGATGCCTCATTTGTGGGTGGTTTC | TCATATCAAATGAGTTTCCTGA | A/T | 2
SmaSNP_283 | AP-2 complex subunit alpha-2-like | 2884 | 2 | 1584 | ACGTTGGATGGTGCAAAAAGTCAGTTTGGG | ACGTTGGATGCGTGTCAAATTTAAGCACAAC | cGTTTGGGTGCTATCATTG | G/T | 1
SmaSNP_284 | Apoptosis regulator BAX | 2710 | 5 | 343 | ACGTTGGATGCCTGATCACAGAGGTCATTG | ACGTTGGATGTTACTTTCGCAGAGGCAAGG | AGGATATGCCCGCGGAG | A/G | 1
SmaSNP_285 | Borealin | 1493 | 1 | 979 | ACGTTGGATGCTCTTTTTGACGTAGTCGGG | ACGTTGGATGCCAGCTCAGAGGATGAAAAC | tTGTTGCTCTCCCCTTCTTCGTTAT | G/T | 3
SmaSNP_286 | Brain protein 44 | 1883 | 3 | 535 | ACGTTGGATGCGGCCATGGTTTGACGTTAG | [NAME] | GAGCAGTGGGTGTAGCGTGTT | C/T | 3
[NAME] | Exosome component 8 | 1784 | 1 | 1351 | ACGTTGGATGCGATTACATCGGCGATGAAC | ACGTTGGATGTGTGTTCGTCTCGGTTCCGT | gggGAACTGGCTGGCAGCCTGG | A/G | 5
SmaSNP_288 | Atrophin-1 domain containing protein | 2418 | 2 | 1951 | ACGTTGGATGCCCAGAACGTATATTGGAGG | ACGTTGGATGTGAATCTATGTGCAGGGCAG | GTATATTGGAGGAAGCCT | G/T | 4
SmaSNP_289 | similar to connectin/[NAME] | 1685 | 1 | 727 | ACGTTGGATGCGTTATCATTATTGCTCACTG | ACGTTGGATGGGCTCAGGTGAAACCAATAG | TCACTGAAACATTGTTGAC | A/T | 5
SmaSNP_290 | Ubiquitin carboxyl-terminal hydrolase L5 | 2084 | 7 | 984 | ACGTTGGATGGAATCCGTTGTTCACTTGGC | ACGTTGGATGACCAGCAGCTAATACCCTTG | GCGCTTTGTTTCTCCTT | C/T | 2
SmaSNP_291 | Replication factor [NAME] | 1214 | 2 | 208 | ACGTTGGATGACTTGAGAGGCGGACAGAAG | ACGTTGGATGAGTCACAGTGCGGTGACATC | GGGCAGAATCTGAAGAG | A/G | 3
SmaSNP_292 | Histone deacetylase complex subunit SAP18 | 838 | 3 | 664 | ACGTTGGATGGCCTTTCTGAACACGCATAC | ACGTTGGATGTCCAAGATGATGCAAAAGAG | tacacACACATGTAAACACAAAGCAA | C/T | 2
SmaSNP_293 | Replication protein A 14 kDa subunit | 750 | 1 | 248 | ACGTTGGATGGTTTGTTGATGTGCTGCGAC | ACGTTGGATGACAGCCAAGAGACTGTGAAC | gggtgTGGGGACATCCAGTATT | C/G | 6
SmaSNP_294 | Vacuolar protein-sorting-associated protein 25 | 1299 | 7 | 252 | ACGTTGGATGTGTCGTGTTCTGGGAATTTC | ACGTTGGATGAGAATTAGCTCCCGACCTTC | GGGAATTTCTTTGAGATGACT | A/G | 7
SmaSNP_295 | Nucleolar protein family A, member 3 | 728 | 13 | 261 | ACGTTGGATGGCGACAGAATCGATCAAATG | ACGTTGGATGCACGTGGAATCGAAAGGAAG | GATCAAATGTCGTCGATC | C/T | 7
SmaSNP_296 | Carbonic anhydrase | 1615 | 2 | 412 | ACGTTGGATGTTGCCATCCACAGTGTGCTC | ACGTTGGATGCCTACAACAGCCTGCAGTTC | [NAME] | G/T | 6
SmaSNP_297 | UPF0414 [NAME] | 1957 | 3 | 1433 | ACGTTGGATGTCTAATCGCTGCCCTTAACC | ACGTTGGATGTTCGAGCAATATCTGATGCC | TGCCAGTCTGCTGTTATGAAG | C/T | 4
SmaSNP_298 | Queuine tRNA-ribosyltransferase | 1605 | 1 | 120 | ACGTTGGATGCACACCACACTTCAGAAAGC | ACGTTGGATGTTTTGTCACTGAGCACTCCG | CACTTCAGAAAGCCAAATG | C/T | 2
SmaSNP_299 | NHP2-like protein 1 | 1091 | 3 | 305 | ACGTTGGATGTCTGTTCAGGGTTTTGGTGG | ACGTTGGATGTGACCAAAACCATCCTGGAC | CCCTTCCGCAGCTGCTTGTAGTT | C/G | 3
SmaSNP_300 | Histone-lysine N-methyltransferase SETD8-A | 1941 | 3 | 276 | ACGTTGGATGAAAGGAAACGAACCAGCGAC | ACGTTGGATGTTTGCTTGGACTCCGTAGAC | AGGATTGTATAGGCAAGG | C/T | 1
SmaSNP_301 | Zona pellucida glycoprotein 2 | 1615 | 3 | 220 | ACGTTGGATGTAACCCTGGGCAGAAACATC | ACGTTGGATGTGGTCAATGCCAACATGGAG | GGCAGAAACATCACAAAT | A/G | 2
SmaSNP_302 | Fast skeletal [NAME] light chain 2 | 1924 | 14 | 976 | ACGTTGGATGGAACGGAGGTAGAGATCTTG | ACGTTGGATGAGAACATCTGCTACGTCATC | cGATGATTTACTCTTCCTTGTCTTCTC | A/G | 2
SmaSNP_303 | Astacin like metallo-protease | 1546 | 13 | 831 | ACGTTGGATGAAAACGGCTGCTTGTACACG | ACGTTGGATGTTTACGTAGGAGTCCCTGTC | GAGCACGGTGCAGCACGAGG | C/T | 2
SmaSNP_304 | Microsomal glutathione S-transferase 3 | 1445 | 2 | 553 | ACGTTGGATGATCATCCCGAGCAAAGCCAG | ACGTTGGATGAGAGAGGTGTATGCACATGG | AAAGCCAGGTTGCCAAA | A/G | 4
SmaSNP_305 | [NAME] related protein 2/3 complex subunit 4 | 1117 | 5 | 637 | ACGTTGGATGACTCCTTTAGTTCTCCACCC | ACGTTGGATGCAATGTTTGTCTGTGGTCCC | cGTTCTCCACCCTTATGCTGATTG | C/T | 1
SmaSNP_306 | [NAME] | 1438 | 1 | 1304 | ACGTTGGATGATGCTCGTTGGTGAATGGAC | ACGTTGGATGCCATCTGAACGCACTAGAAG | gGTTGTGTCAGTGTCATGATTG | C/G | 1
SmaSNP_307 | Dynein light chain Tctex-type 3 | 2189 | 4 | 220 | ACGTTGGATGTCCACTTGTTCACCAGACTC | ACGTTGGATGACTCTGAGGAGGCTGATAAC | GACTCTGGCTGTAGTCGTCAGCGCC | C/G | 3
SmaSNP_308 | Ependymin-1 | 1203 | 19 | 222 | ACGTTGGATGGAATGACAAGGCTGATGGTG | ACGTTGGATGGAAGATGTCTGCAGCTGTTG | [NAME] | A/G | 5
SmaSNP_309 | C-4 methylsterol oxidase | 1642 | 3 | 421 | ACGTTGGATGCAACCACTTCTGTATCCAGC | ACGTTGGATGCCCAGTCGTATGGGATGTTG | aCACTTCTGTATCCAGCTGCCTTT | A/G | 2
SmaSNP_310 | Dynein light chain LC8-type | 1309 | 50 | 533 | ACGTTGGATGGATAACAAGACTGCAGCAAG | ACGTTGGATGCATTTGCTACCACGTTCCTG | cGACTGCAGCAAGCAGGAAA | G/T | 5
SmaSNP_311 | Rho-related GTP-binding protein RhoF | 4885 | 1 | 1227 | ACGTTGGATGGGTTTCTTTTCCACCAGCAG | ACGTTGGATGCAGTTAGCTCTTTTCTAGTC | gtcTTCGAAACTTATCTTCGAAA | A/T | 5
SmaSNP_312 | Golgi SNAP receptor complex member 1 | 1483 | 6 | 287 | ACGTTGGATGTGTTCATGATTTTGTATCC | [NAME] | TCTATTGTGATTCACTTTACAT | A/T | 4
SmaSNP_313 | Glycine cleavage system H protein | 1040 | 3 | 426 | ACGTTGGATGTGAGGTCAACACACTACTGG | ACGTTGGATGATCTTCATCAGCCAGCCATC | ctTCAACACACTACTGGCAGACAACCC | A/T | 5
SmaSNP_314 | Ribosomal L1 domain-containing protein 1 | 1639 | 2 | 744 | ACGTTGGATGGCATGAAAGGACAAGTGATG | ACGTTGGATGGAGAGATGAGGTGTAGATGG | cAGATCATCCATATAAAGAGTCAATC | A/G | 4
SmaSNP_315 | N-alpha-acetyltransferase 50 | 1939 | 2 | 1369 | ACGTTGGATGGGGAATTAACAGGCTGGAA | ACGTTGGATGACGAAAGGAAGGCTCAAAGG | AGGCTGGAAAATAGTTAATTCA | A/T | 2
SmaSNP_316 | [NAME] isoform 1 | 1051 | 11 | 783 | ACGTTGGATGAGCTTGCTCACTACTGAGAC | ACGTTGGATGTATACCCCTTATGATCCCCG | ACAGCAAATCCAGCGTAGC | C/T | 4
SmaSNP_317 | [NAME]:fj40d12 protein n = 7 Tax = Euteleostomi RepID = A3KP21_DANRE | 1969 | 7 | 645 | ACGTTGGATGAGGATAAACATCTCTTGGAC | ACGTTGGATGGCATCTGAATTCTGATGTTG | tACATAATAACGACTCAAATATTG | A/G | 2
SmaSNP_318 | Mucin multi-domain protein | 2518 | 7 | 1380 | ACGTTGGATGCACTTTTACACAATGCGGAG | ACGTTGGATGTTGTAAAGAAATTGCACAG | TTCTTTTCTTTTTTAGCACTAC | C/G | 2
SmaSNP_319 | Adenosine kinase | 2437 | 3 | 400 | ACGTTGGATGTAGTGACCCATTACCAAACC | ACGTTGGATGGCATTTTATTGGTGGAGCTT | CCATAGAAACTTCTCAGACC | A/G | 1
SmaSNP_320 | No homology found | 2396 | 6 | 1559 | ACGTTGGATGAGGGAAAGAGCCTTTACTTC | ACGTTGGATGTCAAAGGAAGCTCGAAGCTG | GCCTTTACTTCCTTCTCTT | A/G | 2
SmaSNP_321 | Zymogen granule membrane protein 16 | 1263 | 5 | 593 | ACGTTGGATGCCCACTGTTACATTGTTCCG | ACGTTGGATGCTGGGTGATGATCTACTATTG | CAGAGAACTGATTGATCCT | A/G | 3
SmaSNP_322 | 6-pyruvoyl tetrahydrobiopterin synthase | 1175 | 1 | 549 | ACGTTGGATGAGTGACCTCGCCTTAACAAG | ACGTTGGATGCTCTTGCACTTTATACACTC | TTAACAAGAATACAAATTCGAC | C/T | 6
SmaSNP_323 | Proteasome subunit beta | 1591 | 2 | 1286 | ACGTTGGATGGTACGAAGGGTTTGCTTGTC | ACGTTGGATGCCTTCACTTGGGCTTTACTC | gCTGCTGTTGAGCAGCCGAAGAAT | C/T | 2
[NAME] | RING finger protein 4 | 1061 | 11 | 384 | ACGTTGGATGCATAGCCTTCAGTGTTGTCC | ACGTTGGATGAACAGAGCAACGAAGAGGAC | tAGTGTTGTCCATCACAT | A/G | 1
SmaSNP_325 | [NAME] | 1653 | 1 | 551 | ACGTTGGATGCCACACCATCAAGACAAAGG | ACGTTGGATGCTTCTGCTGCAGGTTATCAC | GACAAAGGATGGAGTGTCC | C/G | 7
SmaSNP_326 | Choline transporter-like protein 2 | 3125 | 5 | 680 | ACGTTGGATGCGTCCACTAAATGGTGTGAG | ACGTTGGATGCATTCCCACTGAAACCAGAC | tGTGTGAGCCTGAGCGAGG | A/G | 2
SmaSNP_327 | small nuclear ribonucleoprotein polypeptide A' | 1151 | 1 | 298 | ACGTTGGATGGGGTGTCTCCATTTGTTCAG | ACGTTGGATGAGGCCGAGATCTGAGACAAG | aaTCCTCTTCTTCCACCAGGTCA | A/G | 4
SmaSNP_328 | RNA-binding proteins (RRM domain) | 1460 | 5 | 647 | ACGTTGGATGCAACCATACTGAAAGCAACC | ACGTTGGATGCATCAACCTTCAGAGAGGAG | TTGGTATTGTAGGACATTCAACCCT | C/T | 4
SmaSNP_329 | Type II keratin | 2399 | 16 | 617 | ACGTTGGATGCTGGCCCTTGTGTATTTGAG | ACGTTGGATGGGGATCACTTGCTGTTTTTC | TGTGTATTTGAGGCCATGTTTAC | C/G | 3
SmaSNP_330 | Novel protein similar to vertebrate thyroid hormone receptor interactor 12 (TRIP12) | 2191 | 4 | 1539 | ACGTTGGATGTTTGGAACAGCACTTGACAC | ACGTTGGATGCGGTTGTCACTTTTTTCCCC | tCTACACACAGATAAATTATACATC | C/T | 5
SmaSNP_331 | nucleotide-binding oligomerization domain containing 2-like | 2144 | 22 | 950 | ACGTTGGATGACAACTGGAGAGCAACACAC | ACGTTGGATGAACATCTTCAGACCACCACG | AGCAACACACATTGACA | G/T | 5
[NAME] | Ribosomal protein S6 kinase | 3056 | 12 | 157 | ACGTTGGATGGTGCTGTGGCTGAATAATCC | ACGTTGGATGGAGAGTTTTGCCACCAAACA | TCCATGAACCAGCTGTC | A/C | 6
SmaSNP_333 | Transmembrane 6 superfamily member 2 | 2386 | 3 | 434 | ACGTTGGATGGGTGATTCATGCAGATTCCC | ACGTTGGATGTGTGGCCGACCTGTATATTC | CATGCAGATTCCCAAGATGT | A/T | 3
SmaSNP_334 | PREDICTED: hypothetical protein LOC100712283 [Oreochromis niloticus] | 1711 | 3 | 444 | ACGTTGGATGACCCCAAGTGAAATATCTGC | ACGTTGGATGGAATATTTTGGTCACGTCCT | CACTTCAGAGTCAAATTGTC | C/T | 2
SmaSNP_335 | SSU rRNA; | [NAME] aculeatus (three-spined stickleback) | 1834 | 2 | 623 | ACGTTGGATGCCTTCCAGCAAAATGCTGAG | [NAME] | gGCTGAGTTAAAAAGAAAATACATC | A/G | 5
SmaSNP_336 | [NAME] 1 | 948 | 4 | 707 | [NAME] | ACGTTGGATGGGTGGATGGATGTTTTGGAG | ccgacACGACTCCATAAATCTTGTCTT | A/G | 6
SmaSNP_337 | 1-alkyl-2-acetylglycerophosphocholine esterase | 2246 | 2 | 1694 | ACGTTGGATGGAGCCACAGTCCTTTTCCAG | ACGTTGGATGCCTGCTTCTTAGAAGAAACC | tttgCCAGATAAACTATGTTCCAGT | C/T | 6
SmaSNP_338 | CD151 antigen | 1488 | 5 | 933 | ACGTTGGATGCAGTTACGTTGTGCACTGTC | ACGTTGGATGCCTTATGCGTCTTGGAAGTG | ggaAGATAATCTGAACAGGTTTTAG | C/T | 6
SmaSNP_339 | Arsenite methyltransferase 1 | 3560 | 2 | 2720 | ACGTTGGATGCACGCTGTGAGCCAATGAAA | ACGTTGGATGAAGCAAGATGCTGTCCTGTG | GAGCCAATGAAATGAGGTC | A/T | 4
SmaSNP_340 | Receptor expression-enhancing protein 5 | 1539 | 58 | 437 | ACGTTGGATGGCCTTTTCAGCATCGTTGAG | ACGTTGGATGACCATATCAGGAACAGGCAC | TTCTGGTTCCCCTTCTA | C/T | 2
SmaSNP_341 | Cathepsin S | 3184 | 5 | 1391 | ACGTTGGATGTGATATCAGGACACCCGTTG | ACGTTGGATGTCTTGTGGCTCTTGCTGGG | cTATCAGGACACCCGTTGACTTCTT | C/G | 4
SmaSNP_342 | Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase | 1454 | 3 | 1250 | ACGTTGGATGCCACACCGAGTCGATAAAAG | ACGTTGGATGTCTTCCTCAGGTTTTGACTC | gCCGAGTCGATAAAAGAGAAAGTTT | A/G | 3
SmaSNP_343 | High mobility group protein 2 | 1626 | 1 | 945 | ACGTTGGATGAGTCCGCACAGAACAGAAAG | ACGTTGGATGAAGGGCCAGAAGAATAAGCG | aAGACGGTGGTCTCTTGGGGGCATT | G/T | 4
SmaSNP_344 | Transferrin 1 | 2136 | 4 | 677 | ACGTTGGATGGGAGAACACTGGTGCTAATG | ACGTTGGATGCCATTTCAGGGCAGATCAAC | GGCTAAAGGCAGTAAGTC | A/C | 5
SmaSNP_345 | Argininosuccinate synthase | 2190 | 5 | 1901 | ACGTTGGATGCCAGCACCAAAAAGTAACAG | ACGTTGGATGGCTTAAGACACAGTGGAGAG | cccatTAACAGTTGCTGCCCTGC | A/T | 6
SmaSNP_346 | ATP-binding cassette, sub-family A (ABC1) | 3055 | 1 | 1070 | ACGTTGGATGCTCAATCTCACGTCGTTACC | ACGTTGGATGCTGGCGCAATAGCATGTTTT | aacctTTACCAAGTTTTATAATGCGA | C/T | 5
SmaSNP_347 | [NAME] 1a (skelemin) | 3283 | 2 | 2497 | ACGTTGGATGTCTTGTGTACAGCTGCTTCC | ACGTTGGATGTCACTGTTTGCCTCCTTGAC | cttctAGCTGCTTCCCTCCCTG | C/T | 3
SmaSNP_348 | Retinoic acid receptor responder protein 3 | 1762 | 3 | 934 | ACGTTGGATGCAAGCATTTATGAGTAAGC | ACGTTGGATGCTGAAGAATGTAGTGCATCG | agAAGCAACAAATGATGTCTG | A/G | 4
SmaSNP_349 | Nucleophosmin 1 | 4172 | 3 | 2545 | ACGTTGGATGGTCGTAACGTGTGAGAGTAG | ACGTTGGATGGTGTGTGTACTGAACTTAG | TGAGAGTAGTAATTACAGTGGTCA | A/C | 6
SmaSNP_350 | [NAME], heavy polypeptide 1 | 2357 | 31 | 1199 | ACGTTGGATGTCTGGAACAGACAGAGAGAG | ACGTTGGATGAGGCTTGTGTTCTGAGAGTG | GATGCCAGTGAGCGTGT | G/T | 2