Spreadsheet: 7a38cf04-cdca-4545-81d2-21445f2d89e6
Sheet: Sheet1

Previously reported genomic islands present in S. Typhimurium SL1344 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8
Island Name | SL1344 Start | SL1344 Stop | [NAME] gene | Right flanking SL1344 gene | Left flanking LT2 gene | Right flanking LT2 gene
SPI-6 (SCI) | 304335 | 351198 | SL0259 | SL0304 | STM0264 | STM0308
SPI-16 | 613123 | 618077 | SL0545 | SL0550 | STM0552 | STM0561
SPI-14 | 924730 | 933210 | SL0829 | SL0837 | STM0853 | STM0861
Gifsy-2 | 1054601 | 1103074 | SL0941 | SL0998 | STM1004 | STM1058
SPI-5 | 1131870 | 1140774 | SL1025 | SL1036 | STM1085 | STM1097
SPI-11 | 1282489 | 1297609 | SL1176 | SL1192 | STM1238 | STM1256
SPI-2 | 1418592 | 1458341 | SL1312 | SL1357 | STM1378 | STM1425
sopE2 | 1908239 | 1925863 | SL1781 | SL1807 | STM1852 | STM1873
ST64B | 2039439 | 2079774 | SL1927 | SL1977 | STM1999 | STM2001
sseK2 | 2228762 | 2231728 | SL2111 | SL2117 | STM2135 | STM2140
SPI-12 | 2328547 | 2344417 | SL2205 | SL2222 | [NAME] | STM2246
SPI-17 | 2503615 | 2511512 | SL2362 | SL2367 | [NAME] | STM2399
Gifsy-1 | 2726717 | 2777229 | SL2545 | SL2601 | [NAME] | STM2637
SPI-9 | 2838155 | 2855064 | SL2660 | SL2664 | STM2688 | STM2692
Fels-2 | 2855065 | 2935199 | SL2664 | SL2755 | STM2692 | STM2770
SopE(phi) | 2862587 | 2865953 | SL2672 | SL2677 | STM2701 | STM2707
pipB2 | 2935199 | 2950948 | SL2754 | SL2764 | STM2769 | STM2781
SPI-1 | 3028764 | 3072003 | SL2840 | SL2887 | STM2860 | STM2908
SPI-15 | 3205215 | 3218141 | SL3000 | SL3014 | STM3022 | STM3038
SPI-13 | 3296925 | 3316830 | SL3090 | SL3109 | STM3115 | STM3135
SPI-3 | 3970670 | 3987005 | SL3717 | SL3730 | [NAME] | [NAME]
Cryptic | 4438004 | 4459626 | SL4129 | SL4156 | [NAME] | STM4220
[NAME] | 4498109 | 4522828 | SL4192 | SL4199 | STM4256 | STM4263
SPI-10 | 4751679 | 4773247 | SL4416 | SL4429 | STM4486 | STM4499
S. Typhimurium SL1344 insertions with respect to S. bongori
Island Name | SL1344 Start | SL1344 Stop | [NAME] gene | Right flanking SL1344 gene | Left flanking LT2 gene | Right flanking LT2 gene | Left flanking SBG gene | Right flanking SBG gene
- | 58747 | 74019 | SL0050 | SL0065 | STM0049 | STM0064 | SBG0047 | SBG0048
- | 229715 | 237206 | SL0195 | SL0203 | [NAME] | STM0202 | [NAME] | SBG0192
- | 478803 | 485712 | SL0419 | SL0427 | STM0425 | STM0433 | SBG0378 | SBG0379
- | 574269 | 595539 | SL0506 | SL0526 | [NAME] | STM0533 | SBG0453 | SBG0454
- | 603057 | 612193 | SL0535 | SL0545 | STM0542 | STM0552 | SBG0460 | SBG0462
- | 716450 | 724968 | [NAME] | SL0650 | [NAME] | STM0661 | SBG0557 | SBG0558
- | 822538 | 833670 | SL0737 | SL0747 | STM0760 | STM0770 | SBG0652 | SBG0653
- | 1387002 | 1396469 | SL1283 | SL1292 | [NAME] | STM1358 | SBG1201 | SBG1202
- | 1583248 | 1592912 | SL1478 | SL1488 | STM1549 | STM1558 | SBG1374 | SBG1377
- | 2392017 | 2398180 | SL2255 | SL2262 | STM2286 | STM2293 | [NAME] | SBG2082
- | 2464868 | 2472051 | SL2325 | SL2331 | STM2356 | STM2362 | SBG2142 | [NAME]
- | 2559820 | 2577694 | SL2414 | SL2435 | STM2451 | STM2472 | SBG2247 | SBG2248
- | 2618515 | 2620520 | SL2466 | SL2471 | [NAME] | STM2510 | SBG2285 | SBG2288
- | 3145876 | 3154226 | SL2952 | SL2960 | STM2972 | STM2980 | [NAME] | SBG2588
- | 3261160 | 3269628 | SL3054 | SL3062 | STM3078 | STM3086 | SBG2688 | SBG2689
- | 3539365 | 3548095 | SL3321 | SL3331 | STM3349 | STM3359 | SBG2977 | [NAME]
- | 3701128 | 3707769 | SL3482 | SL3489 | STM3515 | STM3523 | SBG3123 | SBG3128
- | 3711561 | 3720233 | SL3493 | SL3501 | [NAME] | STM3534 | SBG3127 | SBG3128
- | 3998852 | 4006847 | SL3741 | SL3752 | [NAME] | STM3786 | SBG3348 | SBG3349
- | 4240646 | 4246447 | SL3955 | SL3962 | STM4009 | STM4016 | SBG3532 | SBG3533
- | 4296780 | 4311702 | SL4013 | SL4030 | STM4064 | STM4081 | SBG3576 | SBG3579
- | 4345255 | 4353734 | SL4059 | SL4066 | STM4109 | STM4117 | SBG3607 | SBG3608
- | 4372189 | 4378002 | SL4080 | SL4081 | [NAME] | STM4137 | SBG3620 | SBG3622
- | 4380976 | 4381933 | SL4083 | SL4085 | STM4139 | STM4146 | [NAME] | SBG3625
- | 4536965 | 4541123 | SL4211 | SL4217 | [NAME] | STM4281 | SBG3718 | SBG3719
- | 4678632 | 4701761 | SL4349 | SL4367 | STM4416 | STM4437 | SBG3860 | SBG3861
- | 4797629 | 4806882 | SL4454 | SL4461 | STM4523 | STM4530 | SBG3938 | SBG3941
- | 4846441 | 4851992 | SL4497 | SL4503 | STM4570 | [NAME] | SBG3981 | SBG3983
Non-conserved regions between S. bongori and S. Typhimurium SL1344
Island Name | SL1344 Start | SL1344 Stop | [NAME] gene | Right flanking SL1344 gene | Left flanking LT2 gene | Right flanking LT2 gene | Left flanking SBG gene | Right flanking SBG gene
- | 368159 | 391904 | SL0318 | SL0345 | [NAME] | STM0350 | SBG0262 | SBG0305
- | 783143 | 793335 | SL0699 | SL0710 | STM0718 | STM0728 | SBG0610 | SBG0622
- | 1675952 | 1680743 | SL1558 | SL1563 | [NAME] | STM1633 | SBG1456 | SBG1467
- | 2157075 | 2177742 | SL2058 | SL2075 | STM2081 | STM2098 | SBG1908 | SBG1916
- | 4582601 | 4587350 | SL4251 | SL4259 | STM4315 | STM4322 | SBG3763 | SBG3773
S. bongori non-conserved regions overlapping with annotated islands in S. Typhimurium SL1344
Overlapping Island | SL1344 Start | SL1344 Stop | [NAME] gene | Right flanking SL1344 gene | Left flanking LT2 gene | Right flanking LT2 gene | Left flanking SBG gene | Right flanking SBG gene
SPI-6 | 304124 | 350421 | SL0259 | SL0303 | STM0264 | STM0307 | SBG0247 | SBG0250
SPI-16 | 613237 | 618745 | SL0546 | SL0551 | STM0554 | STM0563 | SBG0463 | SBG0472
SPI-14 | 640285 | 933210 | SL0829 | SL0837 | STM0853 | STM0861 | SBG0738 | SBG0739
Fels-1 | 961777 | 961903 | SL0868 | SL0869 | STM0892 | STM0930 | SBG0788 | SBG0791
Gfisy-2 | 1054601 | 1100462 | SL0941 | SL0997 | STM1004 | STM1057 | SBG0855 | SBG0859
SPI-5 | 1131169 | 1134194 | SL1025 | SL1029 | STM1085 | STM1090 | SBG0886 | SBG0938
SPI-2 | 1433018 | 1458813 | SL1324 | SL1357 | STM1390 | STM1425 | [NAME] | SBG1248
sopE2 | 1911382 | 1925863 | SL1785 | SL1807 | STM1856 | STM1873 | SBG1708 | SBG1710
ST64B | 2036334 | 2094010 | SL1923 | SL1991 | STM1995 | [NAME] | SBG1820 | [NAME]
SPI-12 | 2328397 | 2344417 | SL2195 | SL2222 | [NAME] | STM2246 | SBG2042 | SBG2061
SPI-17 | 2503495 | 2515679 | SL2362 | SL2371 | [NAME] | STM2403 | SBG2172 | SBG2211
SPI-9, sopE, pipB2, [NAME] | 2838155 | 2950948 | SL2660 | SL2764 | STM2688 | STM2781 | [NAME] | SBG2407
SPI-1 | 3067408 | 3072174 | SL2879 | SL2887 | STM2900 | STM2908 | [NAME] | SBG2522
SPI-15 | 3205215 | 3218294 | SL3000 | SL3014 | STM3022 | STM3038 | SBG2627 | SBG2632
SPI-13 | 3296744 | 3311294 | SL3090 | SL3104 | STM3115 | STM3130 | SBG2714 | SBG2727
SPI-10 | 4751372 | 4774523 | SL4416 | SL4430 | STM4486 | STM4500 | SBG3905 | SBG3915