Spreadsheet: 33355a17-b47a-44ab-bcf6-6e9599b44023
Sheet: Table_S4

Table S4: The 100 Most Extreme XP-EHH SNPs
rsID | Chr | Pos_36 | Pos_37 | IHH_Pygmy | IHH_Bantu | XPEHH_raw | XPEHH | XPEHH_Abs | p-value_Pygmy-Bantu | [NAME] | Genes
rs11864151 | 16 | 35077050 | 35219549 | 0.387448 | 0.00648181 | 4.09058 | 21.132287 |  | 0.559920582 | 0.835702361
rs1568527 | 3 | 90063529 | 89980839 | 0.0227184 | 0.299493 | -2.57891 | -12.961384 |  | 0.574213447 | 0.841807219
rs8189643 | 16 | 35122124 | 35264623 | 0.373084 | 0.0384727 | 2.27186 | 11.835198 |  | 0.291329817 | 0.629174473
rs1448050 | 16 | 35015014 | 35157513 | 0.895308 | 0.239236 | 1.31972 | 6.967967 |  | 0.627690499 | 0.860449037
rs6845295 | 4 | 48357353 | 48662596 | 0.462556 | 1.84946 | -1.38588 | -6.862751 |  | 0.799914271 | 0.941075613 | FRYL;RNU5E-3P
rs4260065 | 16 | 34935609 | 35078108 | 0.832744 | 0.230139 | 1.28604 | 6.795799 |  | 0.675606394 | 0.883548345
rs1702800 | 4 | 48355642 | 48660885 | 0.584632 | 2.25141 | -1.34833 | -6.6708 |  | 0.043371822 | 0.275376648 | FRYL;RNU5E-3P
rs2354312 | 4 | 48365505 | 48670748 | 0.491397 | 1.8809 | -1.34226 | -6.639771 |  | 0.377449748 | 0.698981015 | FRYL;RNU5E-3P
rs7667288 | 4 | 48354150 | 48659393 | 0.60841 | 2.24808 | -1.30698 | -6.459424 |  | 0.377449748 | 0.698981015 | FRYL;RNU5E-3P
rs9313036 | 5 | 3223573 | 3170573 | 7.17869 | 25.1495 | -1.25372 | -6.187164 |  | 0.180590968 | 0.508531746
[NAME] | 4 | 48378315 | 48683558 | 0.561586 | 1.95291 | -1.24631 | -6.149285 |  | 0.063874665 | 0.348300919 | FRYL
rs776581 | 4 | 48352326 | 48657569 | 0.65035 | 2.25138 | -1.24179 | -6.12618 |  | 0.063874665 | 0.348300919 | FRYL;RNU5E-3P
rs11863937 | 16 | 35031940 | 35174439 | 0.858945 | 0.271698 | 1.15101 | 6.105541 |  | 0.614957461 | 0.860449037
rs2358619 | 3 | 53318976 | 53343936 | 19.4147 | 6.29855 | 1.12571 | 5.97621 |  | 0.539110443 | 0.834990791 | TKT;DCP1A
rs17841540 | 16 | 34960690 | 35103189 | 0.867559 | 0.284412 | 1.11526 | 5.922791 |  | 0.150851136 | 0.480954168
rs13082092 | 3 | 53348244 | 53373204 | 19.4257 | 6.37874 | 1.11362 | 5.914407 |  | 0.717702851 | 0.890262507 | TKT;DCP1A
rs1038395 | 3 | 53349727 | 53374687 | 19.3911 | 6.385 | 1.11086 | 5.900299 |  | 0.328037459 | 0.669464202 | TKT;DCP1A
rs7633832 | 3 | 114954982 | 113472292 | 6.19858 | 20.5038 | -1.19629 | -5.893589 |  | 0.692037347 | 0.883548345 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs1661091 | 5 | 3221780 | 3168780 | 7.70346 | 25.4291 | -1.19422 | -5.883007 |  | 0.001838452 | 0.0919226
rs1215655 | 5 | 3223620 | 3170620 | 7.75324 | 25.5437 | -1.19228 | -5.87309 |  | 0.737372852 | 0.904751966
rs12637463 | 3 | 53314823 | 53339783 | 19.5443 | 6.47411 | 1.10487 | 5.869678 |  | 0.521469582 | 0.827729495 | TKT;DCP1A
rs17307574 | 3 | 53320663 | 53345623 | 19.5003 | 6.4706 | 1.10316 | 5.860937 |  | 0.569182759 | 0.840904329 | TKT;DCP1A
rs10212375 | 3 | 114954026 | 113471336 | 6.25734 | 20.5101 | -1.18716 | -5.846917 |  | 0.188156746 | 0.508531746 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs9811353 | 3 | 114966669 | 113483979 | 6.27339 | 20.5122 | -1.1847 | -5.834342 |  | 0.781117729 | 0.935470334 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs13070720 | 3 | 114956444 | 113473754 | 6.29842 | 20.51 | -1.18062 | -5.813486 |  | 0.188156746 | 0.508531746 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs12695295 | 3 | 114957556 | 113474866 | 6.29842 | 20.51 | -1.18062 | -5.813486 |  | 0.188156746 | 0.508531746 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
[NAME] | 5 | 3216688 | 3163688 | 7.7616 | 25.1941 | -1.17742 | -5.797128 |  | 0.404238241 | 0.728357191
rs6445576 | 3 | 53337350 | 53362310 | 19.5497 | 6.57386 | 1.08986 | 5.792949 |  | 0.556289553 | 0.834990791 | TKT;DCP1A
rs1661102 | 5 | 3216438 | 3163438 | 7.80473 | 25.2415 | -1.17376 | -5.778418 |  | 0.979897785 | 0.99896009
rs9288983 | 3 | 114971389 | 113488699 | 6.3694 | 20.5303 | -1.17039 | -5.761191 |  | 0.188156746 | 0.508531746 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs10461029 | 3 | 53307403 | 53332363 | 19.603 | 6.64651 | 1.08159 | 5.750674 |  | 0.569182759 | 0.840904329 | TKT;DCP1A
rs3732834 | 3 | 53299955 | 53324915 | 20.106 | 6.89293 | 1.07052 | 5.694085 |  | 0.341889289 | 0.679056923 | PRKCD;TKT;DCP1A
rs16861296 | 3 | 114936957 | 113454267 | 6.48266 | 20.5673 | -1.15457 | -5.680321 |  | 0.418440543 | 0.740569561 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs9865965 | 3 | 114933185 | 113450495 | 6.46352 | 20.5049 | -1.15449 | -5.679912 |  | 0.797111021 | 0.940623475 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs2566972 | 3 | 114943119 | 113460429 | 6.4606 | 20.4936 | -1.15439 | -5.679401 |  | 0.109817441 | 0.443706832 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs11865835 | 16 | 31417317 | 31509816 | 22.9118 | 7.87758 | 1.06763 | 5.679312 |  | 0.000681374 | 0.0919226 | ZNF843;ITGAD;COX6A2;ARMC5;TGFB1I1;SLC5A2;C16orf58;AHSP;VN1R64P
rs13063111 | 3 | 53300945 | 53325905 | 20.1285 | 6.93105 | 1.06613 | 5.671644 |  | 0.556289553 | 0.834990791 | PRKCD;TKT;DCP1A
rs2712348 | 3 | 114943304 | 113460614 | 6.4731 | 20.4765 | -1.15162 | -5.665241 |  | 0.245262449 | 0.607085284 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs2566970 | 3 | 114944813 | 113462123 | 6.4731 | 20.4765 | -1.15162 | -5.665241 |  | 0.246161794 | 0.607085284 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs1215656 | 5 | 3223720 | 3170720 | 8.0618 | 25.3883 | -1.14715 | -5.642391 |  | 0.945154873 | 0.987304456
rs7643417 | 3 | 53303923 | 53328883 | 20.1178 | 6.97806 | 1.05883 | 5.634327 |  | 0.303576683 | 0.629174473 | TKT;DCP1A
rs9879760 | 3 | 114940638 | 113457948 | 6.54456 | 20.5396 | -1.14372 | -5.624857 |  | 0.781117729 | 0.935470334 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs1026364 | 3 | 114852700 | 113370010 | 10.6852 | 33.4882 | -1.14233 | -5.617752 |  | 0.27802028 | 0.620033184 | SIDT1-AS1;SIDT1;KIAA2018;NAA50;ATP6V1A
rs2279319 | 3 | 53298954 | 53323914 | 19.9617 | 6.94987 | 1.05509 | 5.615209 |  | 0.621280801 | 0.860449037 | PRKCD;TKT;DCP1A
rs11925433 | 3 | 53354493 | 53379453 | 19.2623 | 6.73065 | 1.05148 | 5.596755 |  | 0.42527594 | 0.741106459 | TKT;DCP1A
rs16861260 | 3 | 114848803 | 113366113 | 11.0924 | 34.6206 | -1.13819 | -5.596588 |  | 0.267979814 | 0.620033184 | SIDT1-AS1;SIDT1;KIAA2018;NAA50;ATP6V1A
rs4877475 | 9 | 81000851 | 81811031 | 21.3404 | 66.4095 | -1.13524 | -5.581508 |  | 0.63527905 | 0.867275154
rs2075754 | 19 | 47067084 | 42375244 | 7.14289 | 22.2229 | -1.135 | -5.580281 |  | 0.364297427 | 0.690611236 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1;ATP1A3
rs2769958 | 9 | 81029543 | 81839723 | 17.665 | 54.9389 | -1.13464 | -5.578441 |  | 0.950280539 | 0.987304456
rs1366610 | 19 | 47065138 | 42373298 | 7.15098 | 22.2246 | -1.13395 | -5.574914 |  | 0.364297427 | 0.690611236 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1;ATP1A3
rs2075750 | 19 | 47065519 | 42373679 | 7.15098 | 22.2246 | -1.13395 | -5.574914 |  | 0.364297427 | 0.690611236 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1;ATP1A3
[NAME] | 19 | 47066676 | 42374836 | 7.15601 | 22.2296 | -1.13347 | -5.57246 |  | 0.715430132 | 0.890262507 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1;ATP1A3
rs1048892 | 3 | 114947549 | 113464859 | 6.63035 | 20.5962 | -1.13345 | -5.572358 |  | 0.781117729 | 0.935470334 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs7254214 | 19 | 47060578 | 42368738 | 7.16628 | 22.2518 | -1.13304 | -5.570262 |  | 0.938179636 | 0.987304456 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1
rs873282 | 19 | 47059746 | 42367906 | 7.15698 | 22.2047 | -1.13222 | -5.56607 |  | 0.359105339 | 0.690611236 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1
rs273465 | 9 | 81025557 | 81835737 | 17.7585 | 54.9828 | -1.13016 | -5.55554 |  | 0.147679588 | 0.480954168
rs7648021 | 3 | 114920726 | 113438036 | 8.87628 | 27.309 | -1.12383 | -5.523182 |  | 0.182420686 | 0.508531746 | SIDT1;KIAA2018;NAA50;ATP6V1A
rs10122209 | 9 | 81002163 | 81812343 | 21.7058 | 66.4395 | -1.11871 | -5.497009 |  | 0.648520912 | 0.879350389
rs273464 | 9 | 81019156 | 81829336 | 18.0858 | 55.2634 | -1.11698 | -5.488165 |  | 0.156997109 | 0.490615966
rs4536493 | 16 | 31411252 | 31503751 | 23.6763 | 8.47821 | 1.02697 | 5.471462 |  | 0.003927502 | 0.118581413 | ZNF843;ITGAD;COX6A2;ARMC5;TGFB1I1;SLC5A2;C16orf58;AHSP;VN1R64P
rs9827682 | 3 | 114932941 | 113450251 | 6.79266 | 20.6246 | -1.11064 | -5.455756 |  | 0.246161794 | 0.607085284 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs7600040 | 2 | 176076561 | 176368315 | 3.78824 | 11.4743 | -1.10821 | -5.443334 |  | 0.117812948 | 0.455811638
[NAME] | 5 | 3213085 | 3160085 | 8.08548 | 24.4739 | -1.10754 | -5.439909 |  | 0.403743241 | 0.728357191
rs9646737 | 2 | 176098106 | 176389860 | 3.77176 | 11.4124 | -1.10715 | -5.437915 |  | 0.714848783 | 0.890262507
rs6792447 | 3 | 114991025 | 113508335 | 6.26651 | 18.9343 | -1.10575 | -5.430759 |  | 0.474850265 | 0.776284002 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs2818865 | 9 | 81027325 | 81837505 | 18.1135 | 54.7048 | -1.1053 | -5.428458 |  | 0.178080765 | 0.508531746
rs6433539 | 2 | 176066288 | 176358042 | 3.80233 | 11.4791 | -1.10491 | -5.426465 |  | 0.605006091 | 0.860449037
rs1661110 | 5 | 3214133 | 3161133 | 8.13006 | 24.4311 | -1.10029 | -5.402848 |  | 0.08267946 | 0.393711714
rs17082152 | 9 | 80996102 | 81806282 | 22.1496 | 66.523 | -1.09973 | -5.399985 |  | 0.943979211 | 0.987304456
rs461401 | 5 | 3209508 | 3156508 | 8.19616 | 24.4797 | -1.09418 | -5.371614 |  | 0.0512967 | 0.306248955
rs16863236 | 2 | 176064745 | 176356499 | 3.85322 | 11.4865 | -1.09227 | -5.361851 |  | 0.117441511 | 0.455811638
rs2008265 | 2 | 176004658 | 176296412 | 4.08391 | 12.1656 | -1.09156 | -5.358221 |  | 0.325827852 | 0.668364825
rs9812118 | 3 | 53355093 | 53380053 | 20.0186 | 7.32956 | 1.00474 | 5.357825 |  | 0.717702851 | 0.890262507 | TKT;DCP1A
rs9830102 | 3 | 114890992 | 113408302 | 9.28119 | 27.6378 | -1.09119 | -5.35633 |  | 0.926150972 | 0.987304456 | SIDT1-AS1;SIDT1;KIAA2018;NAA50;ATP6V1A
rs9881563 | 3 | 114896721 | 113414031 | 9.28119 | 27.6378 | -1.09119 | -5.35633 |  | 0.926150972 | 0.987304456 | SIDT1;KIAA2018;NAA50;ATP6V1A
rs9860642 | 3 | 114901901 | 113419211 | 9.28119 | 27.6378 | -1.09119 | -5.35633 |  | 0.926150972 | 0.987304456 | SIDT1;KIAA2018;NAA50;ATP6V1A
rs9848993 | 3 | 114980604 | 113497914 | 6.38539 | 18.9943 | -1.09013 | -5.350911 |  | 0.886685068 | 0.982683571 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs6565237 | 16 | 31425849 | 31518348 | 23.2769 | 8.5366 | 1.0031 | 5.349442 |  | 0.017397227 | 0.193302522 | ZNF843;ITGAD;COX6A2;ARMC5;TGFB1I1;SLC5A2;C16orf58;AHSP;VN1R64P
rs1554531 | 2 | 176013242 | 176304996 | 4.06557 | 12.0894 | -1.08978 | -5.349122 |  | 0.243400445 | 0.607085284
rs13061150 | 3 | 114989424 | 113506734 | 6.37173 | 18.9459 | -1.08972 | -5.348815 |  | 0.097022633 | 0.421837535 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs2305546 | 3 | 114986044 | 113503354 | 6.37253 | 18.9459 | -1.08959 | -5.348151 |  | 0.102664374 | 0.427768225 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs7255488 | 19 | 47056640 | 42364800 | 7.56156 | 22.4662 | -1.08893 | -5.344777 |  | 0.612873835 | 0.860449037 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1
rs2603793 | 3 | 114979108 | 113496418 | 6.38957 | 18.9781 | -1.08862 | -5.343192 |  | 0.13904239 | 0.479586725 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs9851731 | 3 | 114985341 | 113502651 | 6.38461 | 18.9458 | -1.08769 | -5.338438 |  | 0.068867067 | 0.363651311 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs4972473 | 2 | 176083343 | 176375097 | 3.87325 | 11.4902 | -1.0874 | -5.336956 |  | 0.605006091 | 0.860449037
rs921741 | 3 | 114926741 | 113444051 | 6.75134 | 19.9854 | -1.08526 | -5.326016 |  | 0.119799541 | 0.455811638 | SIDT1;KIAA2018;NAA50;ATP6V1A
rs2712353 | 3 | 114978338 | 113495648 | 5.95526 | 17.6236 | -1.08496 | -5.324483 |  | 0.334364883 | 0.675484612 | KIAA2018;NAA50;ATP6V1A;GRAMD1C
rs2461759 | 2 | 176008903 | 176300657 | 4.06825 | 12.0278 | -1.08401 | -5.319626 |  | 0.004446803 | 0.118581413
rs4877474 | 9 | 81000812 | 81810992 | 22.7008 | 66.6646 | -1.07728 | -5.285223 |  | 0.680284303 | 0.883548345
rs1215658 | 5 | 3223878 | 3170878 | 8.67359 | 25.448 | -1.07635 | -5.280469 |  | 0.476483671 | 0.776284002
rs7206531 | 16 | 31449916 | 31542415 | 17.1962 | 6.39453 | 0.989245 | 5.278617 |  | 0.221241529 | 0.567285972 | ZNF843;ARMC5;TGFB1I1;SLC5A2;C16orf58;AHSP;VN1R64P
rs16863205 | 2 | 176041810 | 176333564 | 3.89017 | 11.4084 | -1.0759 | -5.278169 |  | 0.44786088 | 0.762446819
[NAME] | 2 | 176042238 | 176333992 | 3.89017 | 11.4084 | -1.0759 | -5.278169 |  | 0.44786088 | 0.762446819
rs6433541 | 2 | 176085593 | 176377347 | 3.91924 | 11.4877 | -1.07538 | -5.275511 |  | 0.924235148 | 0.987304456
rs4972768 | 2 | 176093680 | 176385434 | 3.91924 | 11.4877 | -1.07538 | -5.275511 |  | 0.924235148 | 0.987304456
rs3810153 | 19 | 47077309 | 42385469 | 6.82098 | 19.9387 | -1.07266 | -5.261606 |  | 0.212792744 | 0.552708426 | CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1;ATP1A3
rs6509002 | 19 | 47049909 | 42358069 | 7.69589 | 22.4501 | -1.07061 | -5.251127 |  | 0.554615705 | 0.834990791 | CEACAM6;CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1
rs16863235 | 2 | 176061158 | 176352912 | 3.97099 | 11.5641 | -1.06889 | -5.242335 |  | 0.416088681 | 0.740569561
rs4889544 | 16 | 31331321 | 31423820 | 28.1756 | 10.5761 | 0.979856 | 5.230621 |  | 0.160460261 | 0.49372388 | [NAME]
rs10417985 | 19 | 47068973 | 42377133 | 7.77611 | 22.5836 | -1.06617 | -5.22843 |  | 0.715430132 | 0.890262507 | CEACAM3;LYPD4;DMRTC2;RPS19;CD79A;ARHGEF1;RABAC1;ATP1A3