Spreadsheet: e03a7359-e276-4d4f-9657-a7a18f580648
Sheet: Table1 -total_top30

Table S1. Top 30 up and top 30 down regulated genes in AD total brain.
GENE | CHROMOSOME | FPKM NORM | FPKM AD | TEST STAT | FOLD CHANGE | P VALUE | significant (after [NAME])
IGHA1 | chr14 | 0.234092 | 5.275364 | 3.73868 | 22.53543051449857 | 0.00018499 | yes
RP11-552E20.3 | chr6 | 1.87539 | 14.272193 | 5.75307 | 7.610253333973199 | 8.763500000000001e-09 | yes
PCYT1A | chr3 | 0.413637 | 3.021956 | 2.65156 | 7.305816452590073 | 0.00801203 | yes
SLC7A9 | chr19 | 0.705822 | 4.834326 | 2.55606 | 6.849214107806218 | 0.0105864 | yes
RAD54L | chr1 | 0.436495 | 2.391719 | 2.22712 | 5.479373188696321 | 0.0259394 | yes
OAS1 | chr12 | 3.82773 | 20.973536 | 5.4553 | 5.47936662199267 | 4.88893e-08 | yes
MTIF2 | chr2 | 3.75753 | 16.176999 | 4.96127 | 4.305221515197483 | 7.00349e-07 | yes
STAB1 | chr3 | 0.729626 | 2.887364 | 2.1476 | 3.957320599868974 | 0.0317452 | yes
CD22 | chr19 | 9.83818 | 36.883742 | 12.6526 | 3.749041184446717 | 0 | yes
AC018730.1 | chr2 | 9.4161 | 32.907895 | 8.03433 | 3.494854026613991 | 8.88178e-16 | yes
RBM6 | chr3 | 14.3402 | 49.546033 | 8.54106 | 3.455044769250081 | 0 | yes
ANKRD18A | chr9 | 5.26774 | 18.141531 | 5.16881 | 3.443892637070167 | 2.35593e-07 | yes
XAF1 | chr17 | 2.38659 | 8.173141 | 2.18752 | 3.424610427429931 | 0.0287046 | yes
PLOD3 | chr7 | 13.0263 | 43.222077 | 10.0759 | 3.318062458257525 | 0 | yes
LY6H | chr8 | 58.0765 | 177.168595 | 22.1832 | 3.050607302437303 | 0 | yes
IFI35 | chr17 | 3.41493 | 9.801358 | 2.42969 | 2.870149022088301 | 0.0151116 | yes
IFI44L | chr1 | 2.68768 | 7.714032 | 2.42969 | 2.870145255387546 | 0.0151116 | yes
P4HA2 | chr5 | 5.84792 | 16.2642 | 5.88699 | 2.781193997181904 | 3.93283e-09 | yes
TPR | chr1 | 6.8165 | 18.675066 | 4.27591 | 2.739685469082374 | 1.90355e-05 | yes
[NAME] | chr12 | 11.1964 | 29.462361 | 11.611 | 2.631413757993641 | 0 | yes
MRPS5 | chr2 | 5.09841 | 13.34723 | 3.20932 | 2.617920096657585 | 0.00133051 | yes
EIF6 | chr20 | 3.26834 | 7.834942 | 2.10437 | 2.397223667060342 | 0.0353464 | yes
BST2 | chr19 | 13.8224 | 32.8197 | 6.14852 | 2.374385056140757 | 7.82075e-10 | yes
KIAA1522 | chr1 | 8.43986 | 18.82886 | 10.0027 | 2.230944589128256 | 0 | yes
RASAL1 | chr12 | 8.65024 | 19.255365 | 6.02693 | 2.22599199559781 | 1.67102e-09 | yes
CUL9 | chr6 | 8.99015 | 19.396258 | 5.76499 | 2.157501042807962 | 8.16649e-09 | yes
MED13L | chr17 | 5.45619 | 11.626412 | 2.45143 | 2.130866410443918 | 0.0142289 | yes
LASS4 | chr19 | 2.66991 | 5.638425 | 2.49844 | 2.111840848567929 | 0.0124742 | yes
[NAME] | chr22 | 5.61533 | 11.834026 | 2.24509 | 2.107449784785578 | 0.0247626 | yes
NOL8 | chr9 | 4.39909 | 9.254133 | 2.52223 | 2.103647117926662 | 0.0116614 | yes
PTCH1 | chr9 | 7.0517 | 0.279992 | -4.46656 | -25.18536243892683 | 7.94873e-06 | yes
ODZ1 | chrX | 6.27085 | 0.241974 | -5.52209 | -25.91538760362684 | 3.34997e-08 | yes
REV3L | chr6 | 6.05172 | 0.233518 | -5.52209 | -25.91543264330802 | 3.34997e-08 | yes
TBC1D16 | chr17 | 9.30102 | 0.353915 | -4.52941 | -26.28037805687806 | 5.91473e-06 | yes
UBE4A | chr11 | 6.02934 | 0.224741 | -4.55985 | -26.82794861640733 | 5.11908e-06 | yes
WDFY3 | chr4 | 7.07629 | 0.258491 | -4.58965 | -27.37538250848192 | 4.43984e-06 | yes
MYO9A | chr15 | 4.87275 | 0.177997 | -4.58965 | -27.37546138418063 | 4.43984e-06 | yes
PPM1H | chr12 | 9.82115 | 0.332183 | -4.70308 | -29.56548047311271 | 2.56263e-06 | yes
PIP5K3 | chr2 | 3.78538 | 0.125706 | -4.7301 | -30.11296199067666 | 2.24408e-06 | yes
SCN2A2 | chr2 | 15.3231 | 0.50533 | -7.60242 | -30.32295727544377 | 2.90878e-14 | yes
MGAT5 | chr2 | 11.2553 | 0.360656 | -4.78266 | -31.20785457610577 | 1.72987e-06 | yes
ARFGEF2 | chr20 | 7.26151 | 0.232681 | -4.78266 | -31.2080058105303 | 1.72987e-06 | yes
INPP5A | chr10 | 25.053 | 0.7889349999999999 | -4.80825 | -31.75546781420523 | 1.52261e-06 | yes
EBF1 | chr5 | 5.86107 | 0.178416 | -4.85808 | -32.85058514931396 | 1.18528e-06 | yes
NBEA | chr13 | 11.7651 | 0.352269 | -6.90471 | -33.3980565987924 | 5.03042e-12 | yes
CNOT1 | chr16 | 8.0755 | 0.23412 | -4.92975 | -34.49299504527593 | 8.23356e-07 | yes
WDR7 | chr18 | 9.06305 | 0.26275 | -6.97172 | -34.4930542340628 | 3.13105e-12 | yes
MON2 | chr12 | 8.01256 | 0.226308 | -6.08462 | -35.40555349346909 | 1.16767e-09 | yes
CADPS | chr3 | 15.2469 | 0.421937 | -4.99801 | -36.13548942140651 | 5.79238e-07 | yes
TNC | chr9 | 5.54575 | 0.153471 | -4.99801 | -36.13549139576858 | 5.79238e-07 | yes
ITGB8 | chr7 | 7.38908 | 0.20143 | -5.02007 | -36.68311572258353 | 5.16533e-07 | yes
MED13L | chr12 | 7.77748 | 0.210969 | -6.15721 | -36.86551104664667 | 7.403570000000001e-10 | yes
[NAME] | chr18 | 14.4233 | 0.387405 | -5.04179 | -37.23054684374234 | 4.61202e-07 | yes
ABLIM1 | chr10 | 19.2058 | 0.39862 | -6.63663 | -48.18072349606142 | 3.20928e-11 | yes
DAO | chr12 | 10.0459 | 0.20387 | -5.45156 | -49.27600922156276 | 4.99295e-08 | yes
TFRC | chr3 | 9.17108 | 0.180114 | -5.49936 | -50.91819625348391 | 3.81183e-08 | yes
GRM1 | chr6 | 7.96543 | 0.142632 | -5.63384 | -55.84602333277246 | 1.76237e-08 | yes
GRM4 | chr6 | 29.2203 | 0.392424 | -9.56798 | -74.46104213809554 | 0 | yes
RELN | chr7 | 32.1276 | 0.272929 | -6.71219 | -117.7141307812655 | 1.91722e-11 | yes
ANK1 | chr8 | 13.7202 | 0.086115 | -7.14688 | -159.3241595540847 | 8.877340000000001e-13 | yes
RELN | chr7 | 19.4443 | 0.05540399999999999 | -8.27531 | -350.9548047072414 | 2.22045e-16 | yes
Differential gene expression for total brain was calculated using the ratio of AD versus normal FPKM values for every gene identified as expressed by Cufflinks. The genes were ranked on this ratio (fold change), and those with the 30 highest and 30 lowest fold change values are shown here.