Spreadsheet: 09881c99-a0ff-44ff-9732-724ce8748c9e
Sheet: Sheet1

Table S7. Alternative splice junctions connecting to unannotated upstream promoters in the human genome | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10
chr | start | end | id | coverage 1) | strand | anchor_sizes | anchor_starts 2) | gene / transcript IDs | annotation_source | junction_type 3)
chr1 | 2331720 | 2334939 | JUNC001 | 2 | - | 30,44 | 0,3175 | PEX10 | RefSeq gene | alternative
chr1 | 2331734 | 2333710 | JUNC002 | 2 | - | 16,21 | 0,1955 | PEX10 | RefSeq gene | annotated
chr1 | 2507876 | 2508403 | JUNC003 | 1 | + | 14,14 | 0,513 | C1orf93 | RefSeq gene | alternative
chr1 | 2508232 | 2508402 | JUNC004 | 1 | + | 15,13 | 0,157 | C1orf93 | RefSeq gene | annotated
chr1 | 24701500 | 24713400 | [NAME] | 1 | + | 40,10 | 0,11890 | RCAN3 | RefSeq gene | alternative
chr1 | 24702169 | 24713419 | JUNC006 | 2 | + | 25,29 | 0,11221 | RCAN3 | RefSeq gene | annotated
chr1 | 26310456 | 26313410 | JUNC007 | 6 | + | 42,41 | 0,2913 | PDIK1L | RefSeq gene | alternative
chr1 | 26310976 | 26313380 | JUNC008 | 1 | + | 17,11 | 0,2393 | PDIK1L | RefSeq gene | annotated
chr1 | 26986872 | 26989852 | JUNC009 | 2 | + | 12,16 | 0,2964 | PIGV | RefSeq gene | alternative
chr1 | 26987050 | 26989847 | [NAME] | 2 | + | 17,11 | 0,2786 | PIGV | RefSeq gene | alternative
chr1 | 26987331 | 26989849 | JUNC011 | 1 | + | 15,13 | 0,2505 | PIGV | RefSeq gene | annotated
chr1 | 43766988 | 43776495 | JUNC012 | 8 | + | 26,40 | 0,9467 | PTPRF | RefSeq gene | alternative
chr1 | 43769307 | 43776486 | [NAME] | 12 | + | 41,31 | 0,7148 | PTPRF | RefSeq gene | annotated
chr1 | 45923844 | 45924696 | JUNC014 | 3 | - | 35,26 | 0,826 | GPBP1L1 | RefSeq gene | annotated
chr1 | 45923862 | 45925262 | JUNC015 | 1 | - | 17,11 | 0,1389 | GPBP1L1 | RefSeq gene | alternative
chr1 | 52871283 | 52881156 | JUNC016 | 1 | + | 16,34 | 0,9839 | FAM159A | RefSeq gene | alternative
chr1 | 52871893 | 52881130 | JUNC017 | 1 | + | 42,8 | 0,9229 | FAM159A | RefSeq gene | annotated
chr1 | 84808963 | 84820590 | JUNC018 | 2 | - | 28,42 | 0,11585 | CTBS | RefSeq gene | alternative
chr1 | 84808974 | 84812520 | JUNC019 | 1 | - | 17,11 | 0,3535 | CTBS | RefSeq gene | annotated
chr1 | 144286722 | 144289456 | JUNC020 | 6 | + | 39,38 | 0,2696 | PIAS3 | RefSeq gene | alternative
chr1 | 144287442 | 144289429 | JUNC021 | 1 | + | 17,11 | 0,1976 | PIAS3 | RefSeq gene | annotated
chr1 | 149165432 | 149166815 | [NAME] | 2 | + | 16,12 | 0,1371 | SETDB1 | RefSeq gene | alternative
chr1 | 149165528 | 149166840 | JUNC023 | 3 | + | 35,37 | 0,1275 | SETDB1 | RefSeq gene | annotated
chr1 | 152203160 | 152207636 | JUNC024 | 2 | + | 17,15 | 0,4461 | CREB3L4 | RefSeq gene | alternative
chr1 | 152206969 | 152207634 | JUNC025 | 1 | + | 15,13 | 0,652 | CREB3L4 | RefSeq gene | alternative
chr1 | 152207242 | 152207636 | [NAME] | 2 | + | 22,15 | 0,379 | CREB3L4 | RefSeq gene | alternative
chr1 | 152207271 | 152207659 | JUNC027 | 2 | + | 13,38 | 0,350 | CREB3L4 | RefSeq gene | annotated
chr1 | 204046818 | 204048580 | JUNC028 | 8 | - | 20,22 | 0,1740 | SLC41A1 | RefSeq gene | annotated
chr1 | 204046820 | 204049466 | JUNC029 | 7 | - | 18,21 | 0,2625 | SLC41A1 | RefSeq gene | alternative
chr1 | 242278897 | 242283731 | JUNC030 | 17 | + | 21,19 | 0,4815 | ZNF238 | RefSeq gene | alternative
chr1 | 242281223 | 242283729 | JUNC031 | 1 | + | 11,17 | 0,2489 | ZNF238 | RefSeq gene | alternative
chr1 | 242281352 | 242283731 | JUNC032 | 4 | + | 17,19 | 0,2360 | ZNF238 | RefSeq gene | annotated
chr2 | 27335288 | 27339199 | JUNC033 | 3 | - | 18,16 | 0,3895 | SLC30A3 | RefSeq gene | annotated
chr2 | 27335290 | 27340393 | JUNC034 | 1 | - | 16,12 | 0,5091 | SLC30A3 | RefSeq gene | alternative
chr2 | 69801461 | 69862193 | JUNC035 | 6 | + | 46,38 | 0,60694 | ANXA4 | RefSeq gene | alternative
chr2 | 69822776 | 69862197 | JUNC036 | 7 | + | 35,42 | 0,39379 | ANXA4 | RefSeq gene | annotated
chr2 | 85642259 | 85659657 | [NAME] | 3 | + | 19,15 | 0,17383 | [NAME] | RefSeq gene | alternative
chr2 | 85658263 | 85659658 | JUNC038 | 3 | + | 20,16 | 0,1379 | [NAME] | RefSeq gene | annotated
chr2 | 85762129 | 85775968 | JUNC039 | 2 | + | 13,15 | 0,13824 | GNLY | RefSeq gene | alternative
chr2 | 85775083 | 85775967 | JUNC040 | 3 | + | 21,14 | 0,870 | GNLY | RefSeq gene | annotated
chr2 | 113015580 | 113021484 | JUNC041 | 2 | + | 12,16 | 0,5888 | POLR1B | RefSeq gene | alternative
chr2 | 113021214 | 113021489 | JUNC042 | 5 | + | 13,21 | 0,254 | POLR1B | RefSeq gene | annotated
chr2 | 176750438 | 176761434 | JUNC043 | 3 | - | 30,42 | 0,10954 | uc002uku.2 | [NAME] | alternative
chr2 | 176750451 | 176750705 | [NAME] | 14 | - | 17,21 | 0,233 | uc002uku.2 | [NAME] | annotated
chr2 | 201924384 | 201935591 | JUNC045 | 2 | - | 35,30 | 0,11177 | ALS2CR12 | RefSeq gene | alternative
chr2 | 201924403 | 201929966 | JUNC046 | 2 | - | 16,17 | 0,5546 | ALS2CR12 | RefSeq gene | annotated
chr2 | 213721580 | 213723177 | JUNC047 | 2 | - | 33,28 | 0,1569 | IKZF2 | RefSeq gene | annotated
chr2 | 213721600 | 213725131 | JUNC048 | 1 | - | 13,37 | 0,3494 | IKZF2 | RefSeq gene | alternative
chr2 | 219960111 | 219972851 | JUNC049 | 3 | - | 18,20 | 0,12720 | DNPEP | RefSeq gene | alternative
chr2 | 219960117 | 219960745 | JUNC050 | 4 | - | 12,21 | 0,607 | DNPEP | RefSeq gene | annotated
chr2 | 238851301 | 238862051 | JUNC051 | 3 | - | 34,28 | 0,10722 | PER2 | RefSeq gene | alternative
chr2 | 238851317 | 238861740 | [NAME] | 2 | - | 18,12 | 0,10411 | PER2 | RefSeq gene | annotated
chr2 | 242278729 | 242292756 | JUNC053 | 2 | + | 12,16 | 0,14011 | [NAME] | RefSeq gene | alternative
chr2 | 242290178 | 242292761 | [NAME] | 2 | + | 12,21 | 0,2562 | [NAME] | RefSeq gene | annotated
chr3 | 47819451 | 47821831 | JUNC055 | 1 | + | 38,12 | 0,2368 | DHX30 | RefSeq gene | alternative
chr3 | 47819685 | 47821839 | JUNC056 | 8 | + | 21,20 | 0,2134 | DHX30 | RefSeq gene | annotated
chr3 | 51982945 | 51986938 | JUNC057 | 1 | + | 16,12 | 0,3981 | ABHD14A | RefSeq gene | alternative
chr3 | 51984245 | 51986943 | JUNC058 | 4 | + | 15,17 | 0,2681 | ABHD14A | RefSeq gene | annotated
chr3 | 148594377 | 148613022 | JUNC059 | 2 | + | 42,28 | 0,18617 | ZIC1 | RefSeq gene | alternative
chr3 | 148611549 | 148613013 | JUNC060 | 6 | + | 22,19 | 0,1445 | ZIC1 | RefSeq gene | annotated
chr3 | 180805219 | 180817486 | [NAME] | 2 | + | 17,22 | 0,12245 | NDUFB5 | RefSeq gene | alternative
chr3 | 180816509 | 180817481 | JUNC062 | 2 | + | 22,17 | 0,955 | NDUFB5 | RefSeq gene | annotated
chr3 | 186783263 | 186790609 | [NAME] | 1 | + | 36,14 | 0,7332 | SENP2 | RefSeq gene | alternative
chr3 | 186786979 | 186790615 | JUNC064 | 4 | + | 17,20 | 0,3616 | SENP2 | RefSeq gene | annotated
chr4 | 55682100 | 55686887 | [NAME] | 1 | - | 14,14 | 0,4773 | KDR | RefSeq gene | alternative
chr4 | 55682102 | 55686166 | JUNC066 | 1 | - | 12,16 | 0,4048 | KDR | RefSeq gene | annotated
chr4 | 145784303 | 145786325 | JUNC067 | 1 | - | 33,17 | 0,2005 | uc003ijq.1 | [NAME] | annotated
chr4 | 145784310 | 145787608 | JUNC068 | 3 | - | 26,40 | 0,3258 | uc003ijq.1 | [NAME] | alternative
chr4 | 152366651 | 152366782 | JUNC069 | 2 | - | 37,13 | 0,118 | SH3D19 | RefSeq gene | annotated
chr4 | 152366666 | 152368374 | JUNC070 | 3 | - | 22,13 | 0,1695 | SH3D19 | RefSeq gene | alternative
chr4 | 159344298 | 159352071 | [NAME] | 3 | + | 12,17 | 0,7756 | TMEM144 | RefSeq gene | alternative
chr4 | 159351166 | 159352076 | JUNC072 | 167 | + | 22,22 | 0,888 | TMEM144 | RefSeq gene | annotated
chr5 | 32567744 | 32624389 | JUNC073 | 2 | + | 35,15 | 0,56630 | SUB1 | RefSeq gene | alternative
chr5 | 32621442 | 32624404 | JUNC074 | 30 | + | 46,30 | 0,2932 | SUB1 | RefSeq gene | annotated
chr5 | 43591839 | 43593214 | JUNC075 | 4 | - | 19,16 | 0,1359 | PAIP1 | RefSeq gene | annotated
chr5 | 43591847 | 43593511 | JUNC076 | 2 | - | 11,17 | 0,1647 | PAIP1 | RefSeq gene | alternative
chr5 | 56505498 | 56507053 | JUNC077 | 8 | + | 12,22 | 0,1533 | GPBP1 | RefSeq gene | alternative
chr5 | 56505782 | 56507046 | [NAME] | 1 | + | 13,15 | 0,1249 | GPBP1 | RefSeq gene | annotated
chr5 | 110101827 | 110105666 | JUNC079 | 3 | + | 20,20 | 0,3819 | SLC25A46 | RefSeq gene | alternative
chr5 | 110102982 | 110105668 | JUNC080 | 12 | + | 20,22 | 0,2664 | SLC25A46 | RefSeq gene | annotated
chr5 | 132020818 | 132023020 | JUNC081 | 2 | + | 17,12 | 0,2190 | IL13 | RefSeq gene | alternative
chr5 | 132021930 | 132023024 | JUNC082 | 2 | + | 21,16 | 0,1078 | IL13 | RefSeq gene | annotated
chr5 | 133888003 | 133899458 | JUNC083 | 1 | + | 16,12 | 0,11443 | PHF15 | RefSeq gene | alternative
chr5 | 133889581 | 133899464 | JUNC084 | 3 | + | 19,18 | 0,9865 | PHF15 | RefSeq gene | alternative
chr5 | 133889854 | 133899458 | JUNC085 | 3 | + | 21,12 | 0,9592 | PHF15 | RefSeq gene | annotated
chr5 | 175892107 | 175896558 | JUNC086 | 2 | - | 16,12 | 0,4439 | RNF44 | RefSeq gene | annotated
chr5 | 175892108 | 175897350 | [NAME] | 1 | - | 15,13 | 0,5229 | RNF44 | RefSeq gene | alternative
chr5 | 176786215 | 176790495 | JUNC088 | 2 | + | 11,17 | 0,4263 | GRK6 | RefSeq gene | alternative
chr5 | 176786471 | 176790512 | [NAME] | 19 | + | 33,34 | 0,4007 | GRK6 | RefSeq gene | annotated
chr6 | 33025624 | 33026294 | JUNC090 | 14 | - | 20,21 | 0,649 | HLA-DMA | RefSeq gene | annotated
chr6 | 33025632 | 33044122 | JUNC091 | 3 | - | 12,21 | 0,18469 | HLA-DMA | RefSeq gene | alternative
chr6 | 44202845 | 44210295 | [NAME] | 2 | + | 11,20 | 0,7430 | TMEM63B | RefSeq gene | alternative
chr6 | 44203374 | 44210292 | JUNC093 | 4 | + | 19,17 | 0,6901 | TMEM63B | RefSeq gene | annotated
chr6 | 46757290 | 46771546 | [NAME] | 3 | + | 45,30 | 0,14226 | TDRD6 | RefSeq gene | alternative
chr6 | 46769848 | 46771535 | JUNC095 | 3 | + | 22,19 | 0,1668 | TDRD6 | RefSeq gene | annotated
chr6 | 86407867 | 86410201 | [NAME] | 2 | - | 21,15 | 0,2319 | SYNCRIP | RefSeq gene | alternative
chr6 | 86407875 | 86409248 | [NAME] | 1 | - | 13,15 | 0,1358 | SYNCRIP | RefSeq gene | annotated
chr6 | 105505038 | 105512677 | JUNC098 | 1 | + | 39,11 | 0,7628 | LIN28B | RefSeq gene | alternative
chr6 | 105511787 | 105512698 | [NAME] | 3 | + | 41,32 | 0,879 | LIN28B | RefSeq gene | annotated
chr6 | 160130889 | 160131983 | JUNC100 | 30 | + | 21,22 | 0,1072 | MRPL18 | RefSeq gene | alternative
chr6 | 160131066 | 160131973 | JUNC101 | 1 | + | 16,12 | 0,895 | MRPL18 | RefSeq gene | alternative
chr6 | 160131645 | 160131979 | JUNC102 | 2 | + | 16,18 | 0,316 | MRPL18 | RefSeq gene | annotated
chr7 | 4967416 | 4982499 | JUNC103 | 1 | + | 8,42 | 0,15041 | RNF216L | RefSeq gene | alternative
chr7 | 4980303 | 4982470 | JUNC104 | 1 | + | 15,13 | 0,2154 | RNF216L | RefSeq gene | annotated
chr7 | 27114207 | 27128077 | JUNC105 | 2 | + | 22,15 | 0,13855 | ENST00000297027 | ENSEMBL transcript | alternative
chr7 | 27120115 | 27128079 | [NAME] | 2 | + | 22,17 | 0,7947 | ENST00000297027 | ENSEMBL transcript | alternative
chr7 | 27122473 | 27128076 | [NAME] | 1 | + | 14,14 | 0,5589 | ENST00000297027 | ENSEMBL transcript | annotated
chr7 | 50314226 | 50329229 | JUNC108 | 3 | + | 30,41 | 0,14962 | IKZF1 | RefSeq gene | alternative
chr7 | 50315047 | 50329209 | JUNC109 | 7 | + | 17,21 | 0,14141 | IKZF1 | RefSeq gene | annotated
chr7 | 65212824 | 65230162 | JUNC110 | 1 | + | 13,37 | 0,17301 | CRCP | RefSeq gene | alternative
chr7 | 65217374 | 65230147 | JUNC111 | 10 | + | [NAME] | 0,12751 | CRCP | RefSeq gene | annotated
chr7 | 77152544 | 77168314 | JUNC112 | 1 | - | 37,13 | 0,15757 | uc003ugj.1 | [NAME] | alternative
chr7 | 77152564 | 77163183 | JUNC113 | 2 | - | 17,35 | 0,10584 | uc003ugj.1 | [NAME] | annotated
chr7 | 97337035 | 97376075 | JUNC114 | 2 | - | 26,33 | 0,39007 | ASNS | RefSeq gene | alternative
chr7 | 97337044 | 97339618 | [NAME] | 3 | - | 17,20 | 0,2554 | ASNS | RefSeq gene | annotated
chr7 | 97737861 | 97749620 | JUNC116 | 11 | + | 22,22 | 0,11737 | BRI3 | RefSeq gene | alternative
chr7 | 97749163 | 97749620 | JUNC117 | 12 | + | 22,22 | 0,435 | BRI3 | RefSeq gene | annotated
chr7 | 128099535 | 128102982 | JUNC118 | 1 | + | 32,18 | 0,3429 | FAM71F2 | RefSeq gene | alternative
chr7 | 128099818 | 128102979 | JUNC119 | 5 | + | 22,15 | 0,3146 | FAM71F2 | RefSeq gene | annotated
chr7 | 138675883 | 138680808 | [NAME] | 124 | + | 22,22 | 0,4903 | [NAME] | RefSeq gene | alternative
chr7 | 138676786 | 138680806 | JUNC121 | 5 | + | 22,20 | 0,4000 | [NAME] | RefSeq gene | annotated
chr8 | 28230450 | 28242603 | JUNC122 | 3 | + | 39,33 | 0,12120 | PNOC | RefSeq gene | alternative
chr8 | 28230730 | 28242612 | [NAME] | 7 | + | 22,42 | 0,11840 | PNOC | RefSeq gene | annotated
chr8 | 87588441 | 87589854 | JUNC124 | 3 | - | 16,18 | 0,1395 | FAM82B | RefSeq gene | annotated
chr8 | 87588441 | 87595598 | JUNC125 | 1 | - | 16,12 | 0,7145 | FAM82B | RefSeq gene | alternative
chr8 | 93098731 | 93184293 | JUNC126 | 11 | - | 36,33 | 0,85529 | RUNX1T1 | RefSeq gene | alternative
chr8 | 93098737 | 93157397 | JUNC127 | 3 | - | 30,29 | 0,58631 | RUNX1T1 | RefSeq gene | annotated
chr8 | 120719926 | 120720188 | JUNC128 | 14 | - | 22,20 | 0,242 | ENPP2 | RefSeq gene | alternative
chr8 | 120719926 | 120720188 | JUNC129 | 14 | - | 22,20 | 0,242 | ENPP2 | RefSeq gene | annotated
chr8 | 145186958 | 145190612 | JUNC130 | 14 | - | [NAME] | 0,3632 | OPLAH | RefSeq gene | alternative
chr8 | 145186965 | 145187565 | JUNC131 | 2 | - | 11,22 | 0,578 | OPLAH | RefSeq gene | annotated
chr9 | 34571181 | 34579574 | JUNC132 | 16 | - | 22,22 | 0,8371 | [NAME] | RefSeq gene | annotated
chr9 | 34571181 | 34580248 | JUNC133 | 3 | - | 22,21 | 0,9046 | [NAME] | RefSeq gene | alternative
chr9 | 34571184 | 34580706 | JUNC134 | 4 | - | 19,13 | 0,9509 | [NAME] | RefSeq gene | alternative
chr9 | 135990754 | 135994795 | JUNC135 | 4 | + | 31,33 | 0,4008 | WDR5 | RefSeq gene | alternative
chr9 | 135991101 | 135994801 | JUNC136 | 6 | + | 42,39 | 0,3661 | WDR5 | RefSeq gene | annotated
chr9 | 137730752 | 137731480 | [NAME] | 5 | - | 41,44 | 0,684 | SOHLH1 | RefSeq gene | alternative
chr9 | 137730771 | 137731083 | [NAME] | 10 | - | 22,14 | 0,298 | SOHLH1 | RefSeq gene | annotated
chr9 | 138491919 | 138497825 | JUNC139 | 2 | - | 38,43 | 0,5863 | SEC16A | RefSeq gene | alternative
chr9 | 138491939 | 138497232 | JUNC140 | 3 | - | [NAME] | 0,5271 | SEC16A | RefSeq gene | annotated
chr10 | 8127464 | 8137270 | JUNC141 | 2 | + | 20,15 | 0,9791 | GATA3 | RefSeq gene | alternative
chr10 | 8136820 | 8137299 | JUNC142 | 26 | + | 40,44 | 0,435 | GATA3 | RefSeq gene | annotated
chr10 | 31647459 | 31648461 | JUNC143 | 2 | - | 16,12 | 0,990 | LOC220930 | RefSeq gene | alternative
chr10 | 31647460 | 31647843 | [NAME] | 1 | - | 15,13 | 0,370 | LOC220930 | RefSeq gene | annotated
chr10 | 89564314 | 89567568 | JUNC145 | 2 | - | 35,37 | 0,3217 | ATAD1 | RefSeq gene | annotated
chr10 | 89564329 | 89567915 | JUNC146 | 8 | - | 20,12 | 0,3574 | ATAD1 | RefSeq gene | alternative
chr10 | 127386301 | 127397991 | [NAME] | 1 | - | 17,11 | 0,11679 | uc001lim.1 | [NAME] | annotated
chr10 | 127386304 | 127398068 | JUNC148 | 1 | - | 14,14 | 0,11750 | uc001lim.1 | [NAME] | alternative
chr11 | 894841 | 904766 | JUNC149 | 2 | - | 18,20 | 0,9905 | CHID1 | RefSeq gene | alternative
chr11 | 894842 | 900785 | JUNC150 | 2 | - | 17,11 | 0,5932 | CHID1 | RefSeq gene | annotated
chr11 | 2278402 | 2280708 | JUNC151 | 4 | - | 17,21 | 0,2285 | uc001lvv.1 | [NAME] | alternative
chr11 | 2278405 | 2279581 | JUNC152 | 16 | - | 14,20 | 0,1156 | uc001lvv.1 | [NAME] | annotated
chr11 | 6473178 | 6475414 | JUNC153 | 2 | + | 38,24 | 0,2212 | C11orf47 | RefSeq gene | alternative
chr11 | 6475120 | 6475412 | JUNC154 | 4 | + | 17,22 | 0,270 | C11orf47 | RefSeq gene | annotated
chr11 | 7650658 | 7652075 | JUNC155 | 4 | - | 40,43 | 0,1374 | CYB5R2 | RefSeq gene | alternative
chr11 | 7650676 | 7651540 | [NAME] | 11 | - | 22,16 | 0,848 | CYB5R2 | RefSeq gene | alternative
chr11 | 7650680 | 7651422 | [NAME] | 20 | - | [NAME] | 0,720 | CYB5R2 | RefSeq gene | alternative
chr11 | 7650684 | 7651239 | JUNC158 | 2 | - | 14,14 | 0,541 | CYB5R2 | RefSeq gene | annotated
chr11 | 8940285 | 8943026 | [NAME] | 2 | - | 21,14 | 0,2727 | TMEM9B | RefSeq gene | alternative
chr11 | 8940290 | 8942343 | JUNC160 | 1 | - | 16,12 | 0,2041 | TMEM9B | RefSeq gene | annotated
chr11 | 18228224 | 18245028 | JUNC161 | 1550 | + | 15,22 | 0,16782 | SAA1 | RefSeq gene | alternative
chr11 | 18244398 | 18245027 | [NAME] | 14 | + | 21,21 | 0,608 | SAA1 | RefSeq gene | annotated
chr11 | 58094729 | 58100810 | [NAME] | 2 | - | 33,28 | 0,6053 | [NAME] | RefSeq gene | alternative
chr11 | 58094740 | 58099829 | JUNC164 | 7 | - | 22,21 | 0,5068 | [NAME] | RefSeq gene | annotated
chr11 | 62135946 | 62138325 | JUNC165 | 5 | + | 22,20 | 0,2359 | ROM1 | RefSeq gene | alternative
chr11 | 62136129 | 62138320 | JUNC166 | 6 | + | 17,15 | 0,2176 | ROM1 | RefSeq gene | alternative
chr11 | 62137904 | 62138323 | JUNC167 | 7 | + | 15,18 | 0,401 | ROM1 | RefSeq gene | annotated
chr11 | 64459493 | 64461568 | JUNC168 | 1 | - | 15,13 | 0,2062 | GPHA2 | RefSeq gene | alternative
chr11 | 64459495 | 64459920 | JUNC169 | 3 | - | 13,39 | 0,386 | GPHA2 | RefSeq gene | annotated
chr11 | 65997202 | 66006261 | [NAME] | 3 | + | 11,22 | 0,9037 | DPP3 | RefSeq gene | alternative
chr11 | 66004476 | 66006281 | JUNC171 | 11 | + | 36,42 | 0,1763 | DPP3 | RefSeq gene | annotated
chr11 | 70837550 | 70843834 | JUNC172 | 3 | + | 29,31 | 0,6253 | [NAME] | RefSeq gene | alternative
chr11 | 70842039 | 70843841 | JUNC173 | 9 | + | 36,38 | 0,1764 | [NAME] | RefSeq gene | annotated
chr11 | 94113763 | 94167851 | [NAME] | 2 | + | 39,27 | 0,54061 | AMOTL1 | RefSeq gene | alternative
chr11 | 94141347 | 94167865 | JUNC175 | 5 | + | 27,41 | 0,26477 | AMOTL1 | RefSeq gene | annotated
chr11 | 111254960 | 111258315 | JUNC176 | 1 | + | 14,14 | 0,3341 | C11orf1 | RefSeq gene | alternative
chr11 | 111255523 | 111258315 | JUNC177 | 2 | + | 16,14 | 0,2778 | C11orf1 | RefSeq gene | annotated
chr11 | 118284559 | 118285849 | JUNC178 | 4 | - | 15,17 | 0,1273 | BCL9L | RefSeq gene | annotated
chr11 | 118284561 | 118294761 | JUNC179 | 20 | - | 13,17 | 0,10183 | BCL9L | RefSeq gene | alternative
chr12 | 12401306 | 12405428 | JUNC180 | 4 | + | 13,22 | 0,4100 | LOH12CR1 | RefSeq gene | alternative
chr12 | 12401690 | 12405436 | JUNC181 | 1 | + | 20,30 | 0,3716 | LOH12CR1 | RefSeq gene | annotated
chr12 | 52187175 | 52187443 | [NAME] | 23 | - | 18,20 | 0,248 | NPFF | RefSeq gene | annotated
chr12 | 52187175 | 52187896 | JUNC183 | 2 | - | 18,12 | 0,709 | NPFF | RefSeq gene | alternative
chr12 | 56452407 | 56453076 | JUNC184 | 1 | + | 40,10 | 0,659 | FAM119B | RefSeq gene | alternative
chr12 | 56452935 | 56453078 | JUNC185 | 1 | + | 16,12 | 0,131 | FAM119B | RefSeq gene | annotated
chr12 | 101393693 | 101398240 | JUNC186 | 1 | - | 14,14 | 0,4533 | IGF1 | RefSeq gene | annotated
chr12 | 101393695 | 101399632 | JUNC187 | 5 | - | 12,22 | 0,5915 | IGF1 | RefSeq gene | alternative
chr12 | 123023455 | 123024396 | JUNC188 | 2 | + | 17,11 | 0,930 | ZNF664 | RefSeq gene | alternative
chr12 | 123023792 | 123024402 | [NAME] | 1 | + | 11,17 | 0,593 | ZNF664 | RefSeq gene | alternative
chr12 | 123023807 | 123024425 | JUNC190 | 14 | + | 45,40 | 0,578 | ZNF664 | RefSeq gene | alternative
chr12 | 123024501 | 123038554 | JUNC191 | 2 | + | 19,12 | 0,14041 | ZNF664 | RefSeq gene | annotated
chr13 | 75002362 | 75009810 | JUNC192 | 2 | - | 41,10 | 0,7438 | COMMD6 | RefSeq gene | annotated
chr13 | 75002381 | 75021473 | [NAME] | 5 | - | 22,14 | 0,19078 | COMMD6 | RefSeq gene | alternative
chr13 | 100849480 | 100866702 | JUNC194 | 4 | - | 37,38 | 0,17184 | NALCN | RefSeq gene | annotated
chr13 | 100849503 | 100867001 | JUNC195 | 1 | - | 14,36 | 0,17462 | NALCN | RefSeq gene | alternative
chr14 | 20969816 | 20994065 | [NAME] | 5 | - | 41,35 | 0,24214 | CHD8 | RefSeq gene | alternative
chr14 | 20969843 | 20975206 | JUNC197 | 1 | - | 14,14 | 0,5349 | CHD8 | RefSeq gene | annotated
chr14 | 22838646 | 22846253 | JUNC198 | 1 | + | 15,13 | 0,7594 | BCL2L2 | RefSeq gene | alternative
chr14 | 22841439 | 22846254 | JUNC199 | 4 | + | 14,14 | 0,4801 | BCL2L2 | RefSeq gene | alternative
chr14 | 22845975 | 22846253 | JUNC200 | 2 | + | 15,13 | 0,265 | BCL2L2 | RefSeq gene | annotated
chr14 | 23680324 | 23680532 | [NAME] | 10 | - | 41,46 | 0,162 | FAM158A | RefSeq gene | annotated
chr14 | 23680354 | 23680678 | JUNC202 | 1 | - | 11,17 | 0,307 | FAM158A | RefSeq gene | alternative
chr14 | 95070728 | 95080052 | [NAME] | 2 | + | 12,16 | 0,9308 | GLRX5 | RefSeq gene | alternative
chr14 | 95071453 | 95080047 | JUNC204 | 2 | + | 21,11 | 0,8583 | GLRX5 | RefSeq gene | annotated
chr15 | 27880159 | 27901543 | JUNC205 | 7 | - | 38,47 | 0,21337 | TJP1 | RefSeq gene | annotated
chr15 | 27880159 | 28035771 | [NAME] | 14 | - | 38,45 | 0,155567 | TJP1 | RefSeq gene | alternative
chr15 | 39476591 | 39481675 | JUNC207 | 3 | - | 39,42 | 0,5042 | NDUFAF1 | RefSeq gene | annotated
chr15 | 39476609 | 39481953 | JUNC208 | 8 | - | 21,17 | 0,5327 | NDUFAF1 | RefSeq gene | alternative
chr15 | 77968729 | 77976290 | JUNC209 | 31 | - | 22,22 | 0,7539 | MTHFS | RefSeq gene | annotated
chr15 | 77968734 | 77976590 | JUNC210 | 2 | - | 17,33 | 0,7823 | MTHFS | RefSeq gene | alternative
chr16 | 550193 | 553294 | JUNC211 | 16 | + | 43,38 | 0,3063 | [NAME] | RefSeq gene | alternative
chr16 | 550650 | 553272 | JUNC212 | 1 | + | 12,16 | 0,2606 | [NAME] | RefSeq gene | annotated
chr16 | 3477926 | 3494758 | JUNC213 | 1 | + | 12,38 | 0,16794 | CLUAP1 | RefSeq gene | alternative
chr16 | 3491077 | 3494735 | JUNC214 | 1 | + | 13,15 | 0,3643 | CLUAP1 | RefSeq gene | annotated
chr16 | 20818807 | 20834397 | JUNC215 | 6 | + | 20,19 | 0,15571 | LYRM1 | RefSeq gene | alternative
chr16 | 20819339 | 20834389 | JUNC216 | 2 | + | 19,11 | 0,15039 | LYRM1 | RefSeq gene | annotated
chr16 | 22356302 | 22373539 | JUNC217 | 1 | + | 12,16 | 0,17221 | uc002dkq.2 | [NAME] | alternative
chr16 | 22370469 | 22373540 | JUNC218 | 1 | + | 11,17 | 0,3054 | uc002dkq.2 | [NAME] | annotated
chr16 | 24976887 | 25051267 | JUNC219 | 4 | + | 42,44 | 0,74336 | LCMT1 | RefSeq gene | alternative
chr16 | 25047348 | 25051264 | JUNC220 | 12 | + | 40,41 | [NAME] | LCMT1 | RefSeq gene | annotated
chr16 | 28178281 | 28236245 | JUNC221 | 9 | + | 43,39 | 0,57925 | [NAME] | RefSeq gene | alternative
chr16 | 28212077 | 28236247 | JUNC222 | 13 | + | 45,41 | 0,24129 | [NAME] | RefSeq gene | annotated
chr16 | 30569611 | 30570439 | JUNC223 | 10 | + | 17,22 | 0,806 | PRR14 | RefSeq gene | alternative
chr16 | 30569927 | 30570438 | JUNC224 | 32 | + | 22,21 | 0,490 | PRR14 | RefSeq gene | annotated
chr16 | 56120719 | 56128383 | JUNC225 | 2 | - | 18,11 | 0,7653 | CCDC102A | RefSeq gene | alternative
chr16 | 56120726 | 56127929 | JUNC226 | 1 | - | 11,17 | 0,7186 | CCDC102A | RefSeq gene | annotated
chr16 | 56589913 | 56591819 | JUNC227 | 1 | - | 14,14 | 0,1892 | ZNF319 | RefSeq gene | alternative
chr16 | 56589915 | 56590913 | [NAME] | 1 | - | 12,16 | 0,982 | ZNF319 | RefSeq gene | annotated
chr16 | 83948715 | 84225050 | JUNC229 | 2 | + | 35,30 | 0,276305 | [NAME] | RefSeq gene | alternative
chr16 | 84204462 | 84225048 | [NAME] | 2 | + | 43,28 | 0,20558 | [NAME] | RefSeq gene | annotated
chr17 | 183685 | 236017 | [NAME] | 2 | - | 40,30 | 0,52302 | [NAME] | RefSeq gene | alternative
chr17 | 183703 | 202518 | [NAME] | 2 | - | 22,16 | 0,18799 | [NAME] | RefSeq gene | annotated
chr17 | 5329244 | 5330734 | JUNC233 | 2 | - | 16,22 | 0,1468 | DERL2 | RefSeq gene | alternative
chr17 | 5329246 | 5330132 | JUNC234 | 4 | - | 14,20 | 0,866 | DERL2 | RefSeq gene | annotated
chr17 | 5329249 | 5330444 | JUNC235 | 2 | - | 11,17 | 0,1178 | DERL2 | RefSeq gene | alternative
chr17 | 6853916 | 6856250 | [NAME] | 1 | - | 16,12 | 0,2322 | uc002gdy.1 | [NAME] | annotated
chr17 | 6853921 | 6856511 | JUNC237 | 1 | - | 11,17 | 0,2573 | uc002gdy.1 | [NAME] | alternative
chr17 | 7081682 | 7083309 | JUNC238 | 4 | - | 21,21 | 0,1606 | PHF23 | RefSeq gene | annotated
chr17 | 7081692 | 7083645 | JUNC239 | 1 | - | 11,17 | 0,1936 | PHF23 | RefSeq gene | alternative
chr17 | 7678382 | 7688960 | JUNC240 | 1 | + | 11,17 | 0,10561 | JMJD3 | RefSeq gene | alternative
chr17 | 7684021 | 7688979 | JUNC241 | 5 | + | 46,36 | 0,4922 | JMJD3 | RefSeq gene | annotated
chr17 | 7967128 | 7968130 | JUNC242 | 12 | - | 41,45 | 0,957 | HES7 | RefSeq gene | annotated
chr17 | 7967138 | 7969149 | JUNC243 | 1 | - | 31,19 | 0,1992 | HES7 | RefSeq gene | alternative
chr17 | 7994866 | 7996401 | JUNC244 | 11 | - | 22,22 | 0,1513 | [NAME] | RefSeq gene | annotated
chr17 | 7994869 | 8000371 | JUNC245 | 20 | - | 19,22 | 0,5480 | [NAME] | RefSeq gene | alternative
chr17 | 24079202 | 24085137 | JUNC246 | 1 | + | 40,10 | 0,5925 | NEK8 | RefSeq gene | alternative
chr17 | 24079359 | 24085135 | JUNC247 | 1 | + | 42,8 | 0,5768 | NEK8 | RefSeq gene | alternative
chr17 | 24079985 | 24085149 | JUNC248 | 5 | + | 20,22 | 0,5142 | NEK8 | RefSeq gene | annotated
chr17 | 24518128 | 24548906 | JUNC249 | 5 | - | 37,42 | 0,30736 | MYO18A | RefSeq gene | alternative
chr17 | 24518148 | 24531467 | [NAME] | 1 | - | 17,11 | [NAME] | MYO18A | RefSeq gene | annotated
chr17 | 24919681 | 24920178 | JUNC251 | 4 | + | 11,17 | 0,480 | TP53I13 | RefSeq gene | alternative
chr17 | 24919956 | 24920178 | JUNC252 | 2 | + | 18,17 | 0,205 | TP53I13 | RefSeq gene | annotated
chr17 | 35077070 | 35079422 | JUNC253 | 5 | + | 16,15 | 0,2337 | PNMT | RefSeq gene | alternative
chr17 | 35077838 | 35079429 | JUNC254 | 2 | + | 11,22 | 0,1569 | PNMT | RefSeq gene | alternative
chr17 | 35078443 | 35079422 | [NAME] | 1 | + | 13,15 | 0,964 | PNMT | RefSeq gene | annotated
chr17 | 71579840 | 71584349 | [NAME] | 1 | + | 12,38 | 0,4471 | GALR2 | RefSeq gene | alternative
chr17 | 71582906 | 71584330 | JUNC257 | 5 | + | 21,19 | 0,1405 | GALR2 | RefSeq gene | annotated
chr18 | 2950810 | 3003131 | JUNC258 | 10 | - | 37,47 | 0,52274 | LPIN2 | RefSeq gene | alternative
chr18 | 2950815 | 3003121 | JUNC259 | 3 | - | 32,37 | 0,52269 | LPIN2 | RefSeq gene | annotated
chr18 | 6918955 | 6919933 | JUNC260 | 4 | - | 12,20 | 0,958 | uc002knh.2 | [NAME] | alternative
chr18 | 6918956 | 6919798 | JUNC261 | 2 | - | 11,17 | 0,825 | uc002knh.2 | [NAME] | annotated
chr18 | 21921509 | 21925078 | JUNC262 | 2 | - | 30,21 | 0,3548 | SS18 | RefSeq gene | alternative
chr18 | 21921525 | 21924476 | JUNC263 | 1 | - | 14,14 | 0,2937 | SS18 | RefSeq gene | annotated
chr19 | 1397294 | 1404022 | JUNC264 | 14 | + | 46,40 | 0,6688 | APC2 | RefSeq gene | alternative
chr19 | 1401295 | 1404027 | JUNC265 | 12 | + | 42,45 | 0,2687 | APC2 | RefSeq gene | annotated
chr19 | 1439266 | 1441792 | JUNC266 | 1 | - | 13,15 | 0,2511 | PCSK4 | RefSeq gene | alternative
chr19 | 1440856 | 1441166 | JUNC267 | 1 | - | 40,10 | 0,300 | PCSK4 | RefSeq gene | annotated
chr19 | 11317282 | 11318030 | [NAME] | 9 | - | 22,21 | 0,727 | uc002mrb.1 | [NAME] | alternative
chr19 | 11317283 | 11317823 | JUNC269 | 7 | - | 21,21 | 0,519 | uc002mrb.1 | [NAME] | annotated
chr19 | 12746691 | 12747234 | JUNC270 | 4 | - | 20,16 | 0,527 | [NAME] | RefSeq gene | annotated
chr19 | 12746693 | 12750126 | JUNC271 | 2 | - | 18,13 | 0,3420 | [NAME] | RefSeq gene | alternative
chr19 | 12746697 | 12750180 | [NAME] | 4 | - | 14,22 | 0,3461 | [NAME] | RefSeq gene | alternative
chr19 | 13089934 | 13107030 | [NAME] | 1 | + | 11,17 | 0,17079 | NACC1 | RefSeq gene | alternative
chr19 | 13090232 | 13107055 | JUNC274 | 9 | + | 36,42 | 0,16781 | NACC1 | RefSeq gene | annotated
chr19 | 21055117 | 21072849 | [NAME] | 1 | + | 31,19 | 0,17713 | ZNF714 | RefSeq gene | alternative
chr19 | 21058676 | 21072847 | JUNC276 | 3 | + | 39,17 | 0,14154 | ZNF714 | RefSeq gene | annotated
chr19 | 44266421 | 44267583 | JUNC277 | 1 | + | 16,12 | 0,1150 | FLJ16165 | RefSeq gene | alternative
chr19 | 44266859 | 44267607 | JUNC278 | 4 | + | 21,36 | 0,712 | FLJ16165 | RefSeq gene | annotated
chr19 | 47470547 | 47482781 | JUNC279 | 18 | + | 22,19 | 0,12215 | CIC | RefSeq gene | alternative
chr19 | 47480751 | 47482780 | JUNC280 | 4 | + | 12,18 | 0,2011 | CIC | RefSeq gene | annotated
chr19 | 63679358 | 63680377 | JUNC281 | 8 | + | 17,20 | 0,999 | ZNF446 | RefSeq gene | alternative
chr19 | 63679661 | 63680379 | JUNC282 | 4 | + | 22,22 | 0,696 | ZNF446 | RefSeq gene | annotated
chr20 | 1110189 | 1112452 | JUNC283 | 4 | - | 42,38 | 0,2225 | C20orf46 | RefSeq gene | annotated
chr20 | 1110219 | 1113802 | JUNC284 | 2 | - | 12,21 | 0,3562 | C20orf46 | RefSeq gene | alternative
chr20 | 36810422 | 36812080 | JUNC285 | 2 | + | 11,17 | 0,1641 | ACTR5 | RefSeq gene | alternative
chr20 | 36810887 | 36812111 | JUNC286 | 6 | + | 23,45 | 0,1179 | ACTR5 | RefSeq gene | annotated
chr20 | 47327416 | 47329065 | JUNC287 | 2 | + | 16,18 | 0,1631 | C20orf199 | RefSeq gene | alternative
chr20 | 47328645 | 47329060 | [NAME] | 1 | + | 15,13 | 0,402 | C20orf199 | RefSeq gene | annotated
chr21 | 43172885 | 43190118 | JUNC289 | 2 | + | 15,13 | 0,17220 | NDUFV3 | RefSeq gene | alternative
chr21 | 43186542 | 43190126 | JUNC290 | 4 | + | 18,21 | 0,3563 | NDUFV3 | RefSeq gene | annotated
chr22 | 36407826 | 36413881 | [NAME] | 6 | + | 19,19 | 0,6036 | NOL12 | RefSeq gene | alternative
chr22 | 36412389 | 36413902 | JUNC292 | 5 | + | 39,40 | 0,1473 | NOL12 | RefSeq gene | annotated
chr22 | 37180813 | 37200508 | JUNC293 | 1 | + | 15,35 | 0,19660 | KDELR3 | RefSeq gene | alternative
chr22 | 37194253 | 37200494 | JUNC294 | 5 | + | 22,21 | 0,6220 | KDELR3 | RefSeq gene | annotated
chr22 | 37427464 | 37434812 | JUNC295 | 1 | + | 11,17 | 0,7331 | GTPBP1 | RefSeq gene | alternative
chr22 | 37432080 | 37434812 | JUNC296 | 4 | + | 18,17 | 0,2715 | GTPBP1 | RefSeq gene | annotated
chrX | 2888427 | 2896211 | JUNC297 | 2 | - | 34,22 | 0,7762 | ARSE | RefSeq gene | alternative
chrX | 2888441 | 2892285 | [NAME] | 6 | - | 20,21 | 0,3823 | ARSE | RefSeq gene | annotated
chrX | 9688837 | 9714307 | JUNC299 | 2 | - | 29,26 | 0,25444 | GPR143 | RefSeq gene | alternative
chrX | 9688850 | 9693641 | [NAME] | 1 | - | 16,34 | 0,4757 | GPR143 | RefSeq gene | annotated
chrX | 70389817 | 70402941 | JUNC301 | 2 | - | 32,23 | 0,13101 | ZMYM3 | RefSeq gene | alternative
chrX | 70389832 | 70391066 | JUNC302 | 1 | - | 17,11 | 0,1223 | ZMYM3 | RefSeq gene | annotated
chrX | 106955673 | 106970570 | [NAME] | 2 | + | 13,15 | 0,14882 | MID2 | RefSeq gene | alternative
chrX | 106956302 | 106970571 | JUNC304 | 2 | + | 14,16 | 0,14253 | MID2 | RefSeq gene | annotated
chrX | 153422764 | 153433436 | [NAME] | 2 | + | 36,40 | 0,10632 | IKBKG | RefSeq gene | alternative
chrX | 153423825 | 153433417 | JUNC306 | 2 | + | 36,21 | 0,9571 | IKBKG | RefSeq gene | annotated
1) Number of spliced reads supporting the junction
2) Start position of each junction anchor, relative to the junction start
3) “annotated” - junction connecting to the annotated first exon; “alternative” - Junction bypassing the annotated first exon and connecting to an upstream site