Spreadsheet: c7d3bdc8-975d-41d7-a4bd-3f51de015e0c
Sheet: Sheet1

Table S4.  Annotation of 180 filtered genes located within PAV segments | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8
Gene_id | Chromosome | annotation | GO_term | is_chr6a | Closest rice gene b | rice annotation | [NAME] gene c | Arabidopsis annotation
GRMZM2G081377 | chr2 | Putative uncharacterized protein | 0 | No
GRMZM2G025971 | chr2 | Agmatine coumaroyltransferase | transferase activity, transferring acyl groups other than amino-acyl groups | No | Os09g0544000 | Transferase family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR003480 : Transferase";Representative_sequence "Os09g0544000") | [NAME] | ( HCT (HYDROXYCINNAMOYL-COA SHIKIMATE/QUINATE HYDROXYCINNAMOYL TRANSFERASE); quinate O-hydroxycinnamoyltransferase/ shikimate O-hydroxycinnamoyltransferase/ transferase )
GRMZM2G145095 | chr2 | Enzyme of the cupin superfamily | 0 | No | Os04g0509400 | Cupin, RmlC-type domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR008579 : Protein of unknown function DUF861, cupin_3";InterPro_id " | AT3G04300.1 | ( FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579
GRMZM2G145075 | chr2 | Putative uncharacterized protein | ATP binding; calcium ion binding; protein amino acid phosphorylation; protein serine/threonine kinase activity | No | Os09g0471200 | EGF-like calcium-binding domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0004672 : protein kinase activity";GO_id "GO:0004674 : protein serine/threonine kinase activity";GO_id | AT1G21210.1 | ( WAK4 (wall associated kinase 4); ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase )
GRMZM2G118992 | chr2 | Enzyme of the cupin superfamily | 0 | No | Os04g0509400 | Cupin, RmlC-type domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR008579 : Protein of unknown function DUF861, cupin_3";InterPro_id " | AT3G04300.1 | ( FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Protein of unknown function DUF861, cupin-3 (InterPro:IPR008579
GRMZM2G054130 | chr2 | Putative uncharacterized protein | 0 | No | Os07g0530300 | Protein of unknown function DUF1715, eukaryotic family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR013179 : Protein of unknown function DUF1715, e | AT2G20830.2 | ( folic acid binding / transferase )
GRMZM2G031904 | chr2 | Putative uncharacterized protein | 0 | No
GRMZM2G463267 | chr2 | 26S proteasome non-ATPase regulatory subunit 13 | 0 | No | Os03g0214600 | Similar to 26S proteasome subunit-like protein (26S proteasome subunit RPN9a).";category "II : Similar to known protein";GO_id "No significant hit available";InterPro_id "IPR000717 : Proteasome component region PCI";R | AT4G19006.1 | ( 26S proteasome regulatory subunit, putative (RPN9) )
GRMZM2G162266 | chr2 | Putative uncharacterized protein | 0 | No | Os04g0595200 | Similar to UPF0195 protein CG30152.";category "II : Similar to known protein";GO_id "No significant hit available";InterPro_id "IPR002744 : Protein of unknown function DUF59";Representative_sequence "AK068599") | AT1G68310.2 | ( vacuolar sorting signal binding )
GRMZM2G094662 | chr2 |  |  | No
GRMZM2G347361 | chr2 | Putative uncharacterized protein | 0 | No
GRMZM2G120449 | chr2 | Erg28 like protein | integral to membrane | No | Os12g0633200 | Erg28-like family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005554 : molecular function unknown";GO_id "GO:0016021 : integral to membrane";InterPro_id "IPR005352 : Erg28-like";Representa | AT1G10030.1 | ( ERG28 (Arabidopsis homolog of yeast ergosterol28) )
GRMZM2G075145 | chr2 | N-acetyltransferase ESCO1 | DNA repair; DNA-directed DNA polymerase activity; damaged DNA binding | No | Os04g0498900 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "J065071K10") | AT4G31400.1 | ( DNA-directed DNA polymerase/ damaged DNA binding )
GRMZM2G367348 | chr2 | Os01g0382000 protein (Putative pathogenesis-related protein 1) | extracellular region | No
GRMZM2G066546 | chr2 | Putative uncharacterized protein | 0 | No
GRMZM2G044438 | chr2 | Putative uncharacterized protein | 0 | No |  |  | [NAME] | ( unknown protein )
AC208892.3_FG005 | chr2 | Putative uncharacterized protein | 0 | No | Os07g0671800 | Similar to Stress-related protein-like protein (Fragment).";category "II : Similar to known protein";GO_id "No significant hit available";InterPro_id "IPR008802 : Rubber elongation factor";Representative_sequence "AK1 | AT3G05500.1 | ( rubber elongation factor (REF) family protein )
GRMZM2G375310 | chr2 | Putative uncharacterized protein | 0 | No
GRMZM2G121868 | chr2 |  |  | No
GRMZM2G176289 | chr4 | Putative uncharacterized protein | nucleus; regulation of transcription; transcription regulator activity | No | Os02g0705500 | Basic helix-loop-helix dimerisation region bHLH domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005634 : nucleus";GO_id "GO:0030528 : transcription regulator activity";GO_id | AT4G34530.1 | ( CIB1 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 1); DNA binding / transcription factor )
GRMZM2G007860 | chr2 |  |  | No
GRMZM2G094908 | chr3 | Putative uncharacterized protein | 0 | No
GRMZM2G159431 | chr1 | Homeobox protein HD1 | nucleus; regulation of transcription, DNA-dependent; sequence-specific DNA binding; transcription factor activity | No | Os03g0123500 | Similar to HOS66 protein.";category "II : Similar to known protein";GO_id "GO:0003677 : DNA binding";GO_id "GO:0003700 : transcription factor [NAME] "GO:0005634 : nucleus";GO_id "GO:0043565 : sequence-specifi | AT1G62990.1 | ( KNAT7 (KNOTTED-LIKE HOMEOBOX OF ARABIDOPSIS THALIANA 7); DNA binding / transcription activator/ transcription factor )
GRMZM2G542205 | chr4 | TPR domain containing protein | binding | No | Os04g0674100 | Thioredoxin-like fold domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR012335 : Thioredoxin fold";InterPro_id "IPR012336 : Thioredoxi | AT3G17670.1 | ( binding )
GRMZM2G179259 | chr4 |  |  | No
GRMZM2G154078 | chr3 | Vegetative cell wall protein gp1 | 0 | No
GRMZM2G401294 | chr3 | Putative uncharacterized protein | 0 | No | Os04g0387600 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK063862") | AT3G48660.1 | ( unknown protein )
GRMZM2G099960 | chr3 | Putative uncharacterized protein | 0 | No
GRMZM2G027100 | chr3 | Putative uncharacterized protein | 0 | No
GRMZM2G471517 | chr3 | Putative uncharacterized protein | 0 | No
GRMZM2G145109 | chr2 | Putative uncharacterized protein | ATP binding; calcium ion binding; protein amino acid phosphorylation; protein serine/threonine kinase activity | No | Os09g0471200 | EGF-like calcium-binding domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0004672 : protein kinase activity";GO_id "GO:0004674 : protein serine/threonine kinase activity";GO_id | AT1G21210.1 | ( WAK4 (wall associated kinase 4); ATP binding / calcium ion binding / protein kinase/ protein serine/threonine kinase )
GRMZM2G094930 | chr3 | Membrane protein | 0 | No
AC204539.4_FG002 | chr2 | Putative uncharacterized protein | 0 | No | Os09g0485800 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK108749")
GRMZM2G057223 | chr3 | Putative uncharacterized protein | 0 | No | Os07g0204100 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "J090040E21")
GRMZM2G364410 | chr3 | Putative uncharacterized protein | 0 | No | Os01g0153500 | Protein of unknown function DUF674 family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR007750 : Protein of unknown function DUF674";Representative_ | AT3G09110.1 | ( unknown protein )
GRMZM2G077375 | chr3 | cDNA clone:J013111A08, full insert sequence (Os01g0681000 protein) (Putative uncharacterized protein P0019E03.16) | 0 | No | Os01g0681000 | Protein of unknown function UPF0089 family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005554 : molecular function unknown";InterPro_id "IPR004255 : Protein of unknown function UPF0089";In | AT3G49210.1 | ( unknown protein )
GRMZM2G425629 | chr3 | Late embryogenesis abundant protein, group 3 | 0 | No | Os01g0705200 | InterPro";category "III : InterPro domain-containing protein";GO_id "No signif
GRMZM2G112222 | chr3 | Putative uncharacterized protein | 0 | No | Os02g0286200 | Lipase, class 3 family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0004806 : triacylglycerol lipase activity";GO_id "GO:0006629 : lipid metabolism";InterPro_id "IPR002921 : Lipase, class 3" | AT4G10955.1 | ( lipase class 3 family protein )
GRMZM2G072652 | chr3 |  |  | No
GRMZM2G470454 | chr3 | POT family protein | membrane; oligopeptide transport; transporter activity | No | Os01g0872000 | TGF-beta receptor, type I/II extracellular region family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005215 : transporter activity";GO_id "GO:0006857 : oligopeptide transport";GO_id "GO:00 | AT1G72140.1 | ( proton-dependent oligopeptide transport (POT) family protein )
GRMZM2G137174 | chr3 | Putative uncharacterized protein | hydrolase activity; lipid metabolic process | No | Os01g0898500 | Similar to [NAME] (Fragment).";category "II : Similar to known protein";GO_id "GO:0006629 : lipid metabolism";InterPro_id "IPR002641 : Patatin";Representative_sequence "AK106563") | AT4G37050.1 | ( PLP4 (PATATIN-LIKE PROTEIN 4); nutrient reservoir )
GRMZM2G398407 | chr3 | Putative uncharacterized protein | 0 | No | Os11g0247500 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK110848")
GRMZM2G133121 | chr3 | Putative uncharacterized protein | 0 | No | Os01g0199900 | Similar to Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC).";category "II : Similar to known protein";GO_id "GO:0003824 : catalytic activity";GO_id "GO:0004638 : phosp | AT2G37690.1 | ( phosphoribosylaminoimidazole carboxylase, putative / AIR carboxylase, putative )
GRMZM2G055629 | chr3 | Putative uncharacterized protein | 0 | No
GRMZM2G587376 | chr2 |  |  | No
GRMZM2G108807 | chr1 | Actin-depolymerizing factor 6 (Putative uncharacterized protein) | [NAME]; intracellular | No | Os03g0780400 | Similar to [NAME]-depolymerizing factor 6 (ADF-6) (AtADF6).";category "II : Similar to known protein";GO_id "GO:0003779 : actin binding";GO_id "GO:0005622 : intracellular";InterPro_id "IPR002108 : [NAME]-binding, cofili | AT2G31200.1 | ( ADF6 (ACTIN DEPOLYMERIZING FACTOR 6); [NAME] )
GRMZM2G160201 | chr1 | Putative uncharacterized protein | 0 | No | Os11g0187000 | WD40-like domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003723 : RNA binding";GO_id "GO:0003964 : RNA-directed DNA polymerase activity";GO_id "GO:0006278 : RNA-dependent DN
GRMZM2G063082 | chr1 |  |  | No
AC177897.2_FG022 | chr1 | Putative uncharacterized protein | 0 | No | Os07g0119400 | Similar to Pectinesterase like protein.";category "II : Similar to known protein";GO_id "GO:0005507 : copper ion binding";GO_id "GO:0016491 : oxidoreductase activity";InterPro_id "IPR001117 : Multicopper oxidase, type | AT5G66920.1 | ( sks17 (SKU5 Similar 17); copper ion binding / oxidoreductase )
GRMZM2G445630 | chr1 |  |  | No
GRMZM2G414215 | chr1 | Os02g0614600 protein (Transport protein-like) | 0 | No | Os02g0614600 | Protein of unknown function [NAME], plant family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR008587 : Protein of unknown function [NAME], plant";R
GRMZM2G016741 | chr1 | Putative uncharacterized protein | 0 | No | Os04g0364800 | Barwin-related endoglucanase domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR005132 : Rare lipoprotein A";InterPro_id "IPR009009 : B
GRMZM2G307222 | chr1 | Putative uncharacterized protein | 0 | No | Os04g0364800 | Barwin-related endoglucanase domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR005132 : Rare lipoprotein A";InterPro_id "IPR009009 : B
GRMZM2G162535 | chr1 | Putative uncharacterized protein | 0 | No | Os03g0206400 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK066494")
GRMZM2G382393 | chr1 | Auxin Efflux Carrier family protein | integral to membrane | No | Os09g0554300 | Auxin Efflux Carrier family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005554 : molecular function unknown";GO_id "GO:0016021 : integral to membrane";InterPro_id "[NAME] : Auxin Efflux
GRMZM2G071292 | chr1 | Putative uncharacterized protein | 0 | No | Os03g0194100 | C2 calcium/lipid-binding region, CaLB domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR000008 : C2";InterPro_id "IPR008973 : C2 calci | AT1G50570.2 | ( C2 domain-containing protein )
GRMZM2G437139 | chr1 | Putative uncharacterized protein | 0 | No | Os03g0285100 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK071764") | AT3G53470.1 | ( unknown protein )
GRMZM2G135892 | chr1 | Glutathione S-transferase, N-terminal domain containing protein (Putative uncharacterized protein) | cell redox homeostasis; electron carrier activity; protein disulfide oxidoreductase activity | No | Os08g0558200 | Glutathione S-transferase, N-terminal domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR012335 : Thioredoxin fold";InterPro_id "IPR004 | AT5G03880.1 | ( electron carrier )
AC208564.3_FG004 | chr1 | M24 protein | nucleus; regulation of transcription, DNA-dependent; sequence-specific DNA binding; transcription factor activity | No | Os03g0753100 | Transcription factor, MADS-box domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003700 : transcription factor [NAME] "GO:0005634 : nucleus";GO_id "GO:0043565 : sequen
GRMZM2G304926 | chr1 | Expressed protein | 0 | No
GRMZM2G003699 | chr1 | Predicted CDS Pa_7_9840 | nucleus; regulation of transcription; transcription factor activity | No
GRMZM2G077991 | chr1 | Ribosomal protein L37 | ribosome; structural constituent of ribosome; translation | No | Os08g0128500 | Similar to 60S ribosomal protein L37 (Fragment).";category "II : Similar to known protein";GO_id "GO:0003735 : structural constituent of ribosome";GO_id "GO:0005622 : intracellular";GO_id "GO:0005840 : ribosome";GO_id | [NAME] | ( 60S ribosomal protein L37 (RPL37C) )
GRMZM2G412418 | chr1 | Putative uncharacterized protein | intracellular protein transport; membrane | No | Os01g0707300 | Similar to Vesicle transport v-SNARE 13 (AtVTI13) (Vesicle transport v-SNARE protein VTI13) (Vesicle soluble NSF attachment protein receptor 13).";category "II : Similar to known protein";GO_id "GO:0006886 : intracell | AT3G29100.1 | ( VTI13; [NAME] binding / receptor )
GRMZM2G307210 | chr1 | Putative uncharacterized protein | 0 | No
GRMZM2G401975 | chr10 | OSIGBa0143N19.2 protein | extracellular region; sexual reproduction | No | Os04g0552200 | Beta-expansin 5.";category "I : Identical to known rice protein";GO_id "GO:0005576 : extracellular region";GO_id "GO:0019953 : sexual reproduction";InterPro_id "IPR005795 : Major pollen allergen Lol pI";InterPro_id "I | AT1G65681.1 | ( FUNCTIONS IN: molecular_function unknown; INVOLVED IN: sexual reproduction; LOCATED IN: extracellular region; CONTAINS InterPro DOMAIN/s: [NAME] allergen, N-terminal (InterPro:IPR014734), Rare lipoprotein A (InterPro:IPR005132), [NAME]
AC204539.4_FG001 | chr2 | Putative uncharacterized protein | 0 | No | Os09g0485800 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK108749")
GRMZM2G105233 | chr2 |  |  | No | Os01g0747800 | VQ domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR008889 : VQ";Representative_sequence "AK073166")
GRMZM2G348539 | chr2 | Putative uncharacterized protein | 0 | No | Os07g0119800 | Protein of unknown function DUF538 family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR007493 : Protein of unknown function DUF538";Representative_ | AT1G09310.1 | ( unknown protein )
GRMZM2G076212 | chr2 | Putative uncharacterized protein | ATP binding; protein amino acid phosphorylation; protein serine/threonine kinase activity | No | Os04g0655300 | Protein kinase-like domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0004672 : protein kinase activity";GO_id "GO:0004674 : protein serine/threonine kinase activity";GO_id "GO: | AT4G32300.1 | ( SD2-5 (S-DOMAIN-2 5); carbohydrate binding / kinase/ protein kinase )
GRMZM2G046733 | chr2 | Putative uncharacterized protein | 0 | No | Os07g0119800 | Protein of unknown function DUF538 family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR007493 : Protein of unknown function DUF538";Representative_ | AT1G09310.1 | ( unknown protein )
GRMZM2G468747 | chr2 | Putative uncharacterized protein | 0 | No | Os07g0119800 | Protein of unknown function DUF538 family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR007493 : Protein of unknown function DUF538";Representative_ | AT1G09310.1 | ( unknown protein )
GRMZM2G334734 | chr2 | Putative uncharacterized protein | 0 | No | Os07g0119800 | Protein of unknown function DUF538 family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR007493 : Protein of unknown function DUF538";Representative_ | AT1G09310.1 | ( unknown protein )
GRMZM2G420280 | chr2 | B0308C03.2 protein (OSJNBa0084A10.13 protein) | regulation of transcription, DNA-dependent | No | Os04g0432100 | GRAS transcription factor domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR005202 : GRAS transcription factor";Representative_sequenc | AT1G63100.1 | ( scarecrow transcription factor family protein )
GRMZM2G108819 | chr1 | Putative uncharacterized protein | 0 | No | Os03g0780200 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK107920") | AT1G31335.1 | ( unknown protein )
GRMZM2G401983 | chr10 | Os05g0246300 protein | extracellular region; sexual reproduction | No | Os02g0658600 | Similar to Beta-expansin (Fragment).";category "II : Similar to known protein";GO_id "GO:0005576 : extracellular region";GO_id "GO:0019953 : sexual reproduction";InterPro_id "IPR005795 : Major pollen allergen Lol pI"; | AT2G45110.1 | ( [NAME] (ARABIDOPSIS THALIANA EXPANSIN B4) )
GRMZM2G493160 | chr4 | Putative uncharacterized protein P0423B08.31 | 0 | No
GRMZM2G086530 | chr10 | OSJNBa0086O06.19 protein | intracellular; zinc ion binding | No | Os11g0707300 | Similar to Transcriptional regulator SUPERMAN.";category "II : Similar to known protein";GO_id "GO:0003676 : nucleic acid binding";GO_id "GO:0005634 : nucleus";GO_id "GO:0008270 : zinc ion binding";InterPro_id "IPR007 | AT2G37740.1 | ( ZFP10 (ZINC-FINGER PROTEIN 10); nucleic acid binding / transcription factor/ zinc ion binding )
GRMZM2G107299 | chr10 | Putative uncharacterized protein | 0 | No
GRMZM2G088795 | chr10 | Acc oxidase | oxidoreductase activity | No | Os05g0149400 | Similar to 1-aminocyclopropane-1-carboxylic acid oxidase.";category "II : Similar to known protein";GO_id "No significant hit available";InterPro_id "IPR005123 : 2OG-Fe(II) oxygenase";Representative_sequence "AK061064 | AT1G77330.1 | ( 1-aminocyclopropane-1-carboxylate oxidase, putative / ACC oxidase, putative )
GRMZM2G072632 | chr10 | Auxin Efflux Carrier family protein | integral to membrane | No | Os09g0554300 | Auxin Efflux Carrier family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005554 : molecular function unknown";GO_id "GO:0016021 : integral to membrane";InterPro_id "[NAME] : Auxin Efflux | AT5G65980.1 | ( auxin efflux carrier family protein )
GRMZM2G074309 | chr10 | Terpene synthase 5 | lyase activity; magnesium ion binding; metabolic process | No | Os01g0337100 | Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0008152 : metabolism";GO_id "GO:0016829 : lyase activity";InterP | AT3G14490.1 | ( terpene synthase/cyclase family protein )
GRMZM2G117319 | chr10 | Terpene synthase 4 | lyase activity; magnesium ion binding; metabolic process | No | Os01g0337100 | Terpenoid cylases/protein prenyltransferase alpha-alpha toroid domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0008152 : metabolism";GO_id "GO:0016829 : lyase activity";InterP | AT3G14490.1 | ( terpene synthase/cyclase family protein )
GRMZM2G038015 | chr1 | Putative uncharacterized protein | nucleus; protein dimerization activity; regulation of transcription, DNA-dependent; sequence-specific DNA binding; transcription factor activity | No | Os03g0306700 | Eukaryotic transcription factor, DNA-binding domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005634 : nucleus";GO_id "GO:0043565 : sequence-specific DNA binding";GO_id "GO:00
GRMZM2G112538 | chr1 | Putative uncharacterized protein (Pathogenesis-related protein 10) | defense response; response to biotic stimulus | No | Os03g0300400 | Pathogen-related protein (JIOsPR10).";category "I : Identical to known rice protein";GO_id "No significant hit available";InterPro_id "IPR000916 : Bet v I allergen";Representative_sequence "AK121376")
GRMZM2G112524 | chr1 | Putative uncharacterized protein (Pathogenesis-related protein 10) | defense response; response to biotic stimulus | No | Os03g0300400 | Pathogen-related protein (JIOsPR10).";category "I : Identical to known rice protein";GO_id "No significant hit available";InterPro_id "IPR000916 : Bet v I allergen";Representative_sequence "AK121376")
GRMZM2G112488 | chr1 | Putative uncharacterized protein (Pathogenesis-related protein 10) | defense response; response to biotic stimulus | No | Os03g0300400 | Pathogen-related protein (JIOsPR10).";category "I : Identical to known rice protein";GO_id "No significant hit available";InterPro_id "IPR000916 : Bet v I allergen";Representative_sequence "AK121376")
GRMZM2G055070 | chr10 | Putative uncharacterized protein | nucleus; regulation of transcription, DNA-dependent; transcription factor activity | No | Os08g0173700 | Similar to Ethylene-responsive transcription factor 4 (Ethylene-responsive element binding factor 4) (Related to APETALA-2 protein 5) (EREBP-4) (AtERF4).";Source_of_ | AT1G12890.1 | ( [NAME] domain-containing transcription factor, putative )
GRMZM2G041175 | chr7 | Putative uncharacterized protein (Senescence-associated protein DH) | integral to membrane | No | Os09g0425900 | Similar to Senescence-associated protein 5.";category "II : Similar to known protein";GO_id "GO:0016021 : integral to membrane";InterPro_id "IPR000301 : CD9/CD37/CD63 antigen";Representative_sequence "AK061801") | AT2G23810.1 | ( TET8 (TETRASPANIN8) )
GRMZM2G051686 | chr6 | Os07g0541400 protein | ATP binding; protein amino acid phosphorylation; protein serine/threonine kinase activity | Yes | Os07g0541400 | Similar to Receptor protein kinase.";category "II : Similar to known protein";GO_id "GO:0004672 : protein kinase activity";GO_id "GO:0004674 : protein serine/threonine kinase activity";GO_id "GO:0005524 : ATP binding" | AT4G23180.1 | ( CRK10 (CYSTEINE-RICH RLK10); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase )
GRMZM2G129092 | chr7 | Pectinesterase inhibitor domain containing protein | enzyme inhibitor activity; pectinesterase activity | No | Os02g0689000 | Pectinesterase inhibitor domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0004857 : enzyme inhibitor activity";GO_id "GO:0030599 : pectinesterase activity";InterPro_id "IPR0071
GRMZM2G088469 | chr7 | Putative uncharacterized protein | 0 | No | Os07g0204100 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "J090040E21")
GRMZM2G066636 | chr7 | Putative uncharacterized protein | catalytic activity; metabolic process | No | Os07g0634400 | Pyrimidine 5-nucleotidase family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003824 : catalytic activity";GO_id "GO:0008152 : metabolism";InterPro_id "IPR005834 : Haloacid dehalogenase-lik | AT3G62040.1 | ( catalytic/ hydrolase )
GRMZM2G458494 | chr7 | Nitrate and chloride transporter | 0 | No | Os12g0484600 | Nodulin-like domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR010658 : [NAME]) | AT2G39210.1 | ( [NAME] protein )
GRMZM2G000453 | chr7 | Putative uncharacterized protein | 0 | No | Os07g0564200 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK072771") | AT1G52855.1 | ( unknown protein )
GRMZM2G370473 | chr7 | Putative uncharacterized protein | small ribosomal subunit; structural constituent of ribosome; translation | No | Os01g0924400 | Similar to Auxin-induced basic helix-loop-helix transcription factor.";category "II : Similar to known protein";GO_id "No significant hit available";InterPro_id "IPR005333 : TCP transcription factor";Representative_se | [NAME] | ( RPS19 (RIBOSOMAL PROTEIN S19); [NAME] binding )
GRMZM2G066290 | chr7 | Pyruvate kinase (EC 2.7.1.40) | glycolysis; magnesium ion binding; potassium ion binding; pyruvate kinase activity | No | Os07g0181000 | Similar to Pyruvate kinase isozyme A, chloroplast precursor (EC 2.7.1.40).";category "II : Similar to known protein";GO_id "[NAME] : pyruvate kinase activity";GO_id "GO:0006096 : glycolysis";InterPro_id "IPR001697 | AT3G22960.1 | ( PKP-ALPHA; pyruvate kinase )
GRMZM2G077162 | chr7 | Putative uncharacterized protein | 0 | No
GRMZM2G382273 | chr7 | Os07g0273700 protein | ATP binding; apoptosis; nucleus; protein binding; regulation of transcription, DNA-dependent; sequence-specific DNA binding; transcription factor activity | No | Os07g0273700 | Transcriptional factor B3 family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003677 : DNA binding";GO_id "GO:0003700 : transcription factor [NAME] "GO:0005524 : ATP binding";GO_id | AT3G14460.1 | ( disease resistance protein (NBS-LRR class), putative )
GRMZM2G137233 | chr7 | Putative uncharacterized protein | 0 | No | Os06g0266100 | Integrase, catalytic region domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0000785 : chromatin";GO_id "GO:0003677 : DNA binding";GO_id "GO:0003682 : chromatin binding";GO_id
GRMZM2G038388 | chr7 | Putative uncharacterized protein | 0 | No | Os04g0512900 | Disease resistance protein family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005524 : ATP binding";GO_id "GO:0006915 : apoptosis";GO_id "GO:0006952 : defense response";GO_id "GO:0042829 : | AT3G14470.1 | ( disease resistance protein (NBS-LRR class), putative )
GRMZM2G381638 | chr7 | Putative uncharacterized protein | 0 | No | Os09g0421700 | Zinc finger, [NAME]-type domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003676 : nucleic acid binding";GO_id "GO:0005634 : nucleus";GO_id "GO:0008270 : zinc ion binding";Inter
GRMZM2G013331 | chr7 | Ribosome inactivating protein | negative regulation of translation; rRNA N-glycosylase activity | No | Os03g0683300 | Ribosome-inactivating protein family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0017148 : negative regulation of protein biosynthesis";GO_id "GO:0030598 : rRNA N-glycosylase activity";Inte
GRMZM2G163535 | chr7 | Putative uncharacterized protein | 0 | No | Os09g0507300 | Similar to L-ascorbate oxidase precursor (EC 1.10.3.3) (Ascorbase) (ASO).";category "II : Similar to known protein";GO_id "GO:0005507 : copper ion binding";GO_id "GO:0016491 : oxidoreductase activity";InterPro_id "IPR | AT4G39830.1 | ( L-ascorbate oxidase, putative )
GRMZM2G013220 | chr7 | Os11g0145400 protein (Putative uncharacterized protein) (Ubiquitin-like protein 5, putative, expressed) (cDNA, clone: J080308D02, full insert sequence) | protein modification process | No | Os12g0143150 | Ubiquitin domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0006464 : protein modification";InterPro_id "IPR000626 : Ubiquitin";Representative_sequence "009-090-F09") | AT3G45180.1 | ( ubiquitin family protein )
GRMZM2G014988 | chr6 | Putative uncharacterized protein | 0 | No
GRMZM2G390009 | chr6 | Putative uncharacterized protein | 0 | No | Os09g0419500 | Zinc finger, RING-type domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0005515 : protein binding";GO_id "GO:0008270 : zinc ion binding";InterPro_id "IPR002867 : Zinc finger, C | AT3G14250.1 | ( protein binding / zinc ion binding )
GRMZM2G082560 | chr6 | Plant viral-response family protein | 0 | Yes | Os09g0444800 | Protein of unknown function [NAME] family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR006904 : Protein of unknown function [NAME]_ | AT1G55240.1 | ( unknown protein )
GRMZM2G161761 | chr6 | Putative uncharacterized protein | 0 | Yes
GRMZM2G009792 | chr6 | Drought inducible 22 kD protein | response to stress | Yes
GRMZM2G143669 | chr4 | Putative uncharacterized protein | binding; metabolic process; oxidoreductase activity | No | Os04g0531900 | Glucose/ribitol dehydrogenase family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0008152 : metabolism";GO_id "GO:0016491 : oxidoreductase activity";InterPro_id "IPR002198 : Short-chain dehy | AT1G01800.1 | ( short-chain dehydrogenase/reductase (SDR) family protein )
GRMZM2G077140 | chr7 | Putative uncharacterized protein | 0 | No
GRMZM2G400497 | chr8 | Chitinase | cell wall macromolecule catabolic process; chitin catabolic process; chitinase activity | No | Os01g0287600 | Similar to Seed chitinase-c.";category "II : Similar to known protein";GO_id "GO:0004568 : chitinase activity";GO_id "GO:0006032 : chitin catabolism";GO_id "GO:0016998 : cell wall catabolism";InterPro_id "IPR000726 : | AT1G02360.1 | ( chitinase, putative )
GRMZM2G036349 | chr9 | PnFL-2 | 0 | No
GRMZM2G095689 | chr9 | Putative uncharacterized protein | 0 | No | Os03g0187400 | Zinc finger, FYVE/PHD-type domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0008270 : zinc ion binding";InterPro_id "IPR011011 : Zinc finger, FYVE/PHD-type";Representative_sequ
GRMZM2G008066 | chr9 | Putative uncharacterized protein | 0 | No | Os07g0209100 | Similar to Seed imbibition protein (Fragment).";category "II : Similar to known protein";GO_id "No significant hit available";InterPro_id "IPR008811 : Raffinose synthase";Representative_sequence "AK120944") | AT3G57520.1 | ( AtSIP2 (Arabidopsis thaliana seed imbibition 2); hydrolase, hydrolyzing O-glycosyl compounds )
GRMZM2G111711 | chr9 | WRKY transcription factor 28 | nucleus; regulation of transcription, DNA-dependent; sequence-specific DNA binding; transcription factor activity | No | [NAME] | Similar to WRKY transcription factor 28.";category "II : Similar to known protein";GO_id "GO:0003700 : transcription factor [NAME] "GO:0005634 : nucleus";GO_id "GO:0043565 : sequence-specific DNA binding";GO_ | AT1G80840.1 | ( WRKY40; transcription factor )
GRMZM2G172396 | chr8 | Putative uncharacterized protein | 0 | No | Os01g0138300 | Protein kinase-like domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0004672 : protein kinase activity";GO_id "GO:0004674 : protein serine/threonine kinase activity";GO_id "GO: | AT1G66910.1 | ( protein kinase, putative )
GRMZM2G139160 | chr8 | C2H2 zinc finger protein | 0 | No | Os01g0785900 | Zinc finger, [NAME]-type domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003676 : nucleic acid binding";GO_id "GO:0005634 : nucleus";GO_id "GO:0008270 : zinc ion binding";Inter | AT5G54630.1 | ( zinc finger protein-related )
GRMZM2G322952 | chr8 |  |  | No
GRMZM2G440125 | chr8 | RING-H2 finger protein ATL5A | protein binding; zinc ion binding | No | Os01g0822800 | Similar to RING-H2 finger protein ATL3C.";category "II : Similar to known protein";GO_id "GO:0005515 : protein binding";GO_id "GO:0008270 : zinc ion binding";InterPro_id "IPR001841 : Zinc finger, RING-type";Representa | AT5G05280.1 | ( zinc finger (C3HC4-type RING finger) family protein )
GRMZM2G336557 | chr8 | Putative uncharacterized protein | 0 | No | Os01g0836900 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK064231") | AT2G39370.1 | ( unknown protein )
GRMZM2G083285 | chr7 | Putative uncharacterized protein | 0 | No
AC234160.1_FG002 | chr8 | Putative uncharacterized protein | 0 | No | Os06g0649900 | Phospholipase D/Transphosphatidylase domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003824 : catalytic activity";GO_id "GO:0008152 : metabolism";InterPro_id "[NAME] : [NAME] | AT5G59970.1 | ( histone H4 )
GRMZM2G066978 | chr6 | Putative uncharacterized protein (cDNA clone:001-031-D12, full insert sequence) (cDNA clone:001-104-D03, full insert sequence) | 0 | Yes | S45168 | 0
GRMZM2G084369 | chr8 | Putative uncharacterized protein (Putative calcium dependent protein kinase) | ATP binding; calcium ion binding; protein amino acid phosphorylation; protein serine/threonine kinase activity | No | Os05g0467000 | Similar to Calcium-dependent protein kinase.";category "II : Similar to known protein";GO_id "GO:0004672 : protein kinase activity";GO_id "GO:0004674 : protein serine/threonine kinase activity";GO_id "GO:0005509 : cal | AT3G51850.1 | ( CPK13; ATP binding / calcium ion binding / calmodulin-dependent protein kinase/ kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase )
GRMZM2G146004 | chr8 | Protein induced upon tuberization | response to stress | No
GRMZM2G096868 | chr7 | Putative uncharacterized protein (Putative uncharacterized protein OSJNBb0052C09.3) | 0 | No | Os02g0129000 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "Os02g0129000")
AC202110.3_FG004 | chr7 | PDR-like ABC transporter | ATP binding; ATPase activity; membrane | No
GRMZM2G417609 | chr7 |  |  | No
GRMZM2G055009 | chr7 | Putative uncharacterized protein | 0 | No | AK106323 | 0
GRMZM2G169991 | chr7 | Ribosomal protein-like | ribosome | No | Os04g0286500 | Homeodomain-like containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0003677 : DNA binding";GO_id "GO:0005634 : nucleus";InterPro_id "IPR001005 : [NAME], DNA-binding";InterPro_id "IPR009057 | [NAME] | ( DNA binding )
GRMZM2G117281 | chr7 | Putative uncharacterized protein | 0 | No
AC234160.1_FG003 | chr8 | Os01g0508000 protein (Putative beta-glucosidase) | carbohydrate metabolic process; cation binding; hydrolase activity, hydrolyzing O-glycosyl compounds | No | Os01g0508000 | Similar to Beta-glucosidase.";category "II : Similar to known protein";GO_id "GO:0005975 : carbohydrate metabolism";InterPro_id "IPR001360 : Glycoside hydrolase, family 1";InterPro_id "IPR011047 : [NAME] alcoho | AT3G18080.1 | ( BGLU44 (B-S GLUCOSIDASE 44); (R)-amygdalin beta-glucosidase/ 4-methylumbelliferyl-beta-D-glucopyranoside beta-glucosidase/ beta-gentiobiose beta-glucosidase/ cellobiose glucosidase/ esculin beta-glucosidase/ hydrolase, hydrolyzing O-glycosyl compounds )
GRMZM2G067485 | chr4 | Bowman-Birk type trypsin inhibitor | extracellular region; serine-type endopeptidase inhibitor activity | No | Os03g0823400 | Similar to Bowman-Birk type trypsin inhibitor (WTI).";category "II : Similar to known protein";GO_id "GO:0004867 : serine-type endopeptidase inhibitor activity";GO_id "GO:0005576 : extracellular region";InterPro_id "I
GRMZM2G156578 | chr6 | Putative uncharacterized protein | 0 | Yes | Os06g0165800 | Similar to Caffeoyl-CoA 3-O-methyltransferase (Fragment).";category "II : Similar to known protein";GO_id "GO:0008171 : O-methyltransferase activity";GO_id "GO:0008757 : S-adenosylmethionine-dependent methyltransferas | AT4G34050.1 | ( caffeoyl-CoA 3-O-methyltransferase, putative )
GRMZM2G050833 | chr5 | Histone H2A | DNA binding; nucleosome; nucleosome assembly; nucleus | No | Os03g0743400 | Q9SNZ3";category "II : Similar to known protein";GO_id "GO:0000786 : nucleosome";GO_id "GO:0003677 : DNA binding";GO_ | AT3G54560.1 | ( HTA11; DNA binding )
GRMZM2G105417 | chr5 | Putative uncharacterized [NAME] (Putative uncharacterized protein P0025F02.10) | 0 | No | Os04g0450000 | Zinc finger, FYVE/PHD-type domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0008270 : zinc ion binding";InterPro_id "IPR011011 : Zinc finger, FYVE/PHD-type";Representative_sequ
GRMZM2G171565 | chr5 | Putative uncharacterized protein | 0 | No
AC210009.3_FG008 | chr5 |  |  | No
GRMZM2G386817 | chr5 | Putative uncharacterized protein | 0 | No | Os02g0509500 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK105187") | AT3G27030.1 | ( unknown protein )
GRMZM2G350471 | chr5 | Putative uncharacterized protein | 0 | No
GRMZM2G054422 | chr5 |  |  | No
GRMZM2G132384 | chr5 |  |  | No
AC195458.3_FG001 | chr5 |  |  | No
GRMZM2G382009 | chr5 | Putative uncharacterized protein (Putative uncharacterized protein P0575F10.24) | response to wounding; serine-type endopeptidase inhibitor activity | No
GRMZM2G376103 | chr5 | Putative uncharacterized protein P0487D09.31 | 0 | No
GRMZM2G093076 | chr4 | Germin-like protein subfamily 1 member 11 | apoplast; manganese ion binding; nutrient reservoir activity | No | Os12g0154700 | Similar to Nectarin 1 precursor (EC 1.15.1.1) (Superoxide dismutase [Mn]).";category "II : Similar to known protein";GO_id "GO:0045735 : nutrient reservoir activity";InterPro_id "IPR001929 : Germin";InterPro_id "IPR00 | AT5G39110.1 | ( germin-like protein, putative )
GRMZM2G436705 | chr4 |  |  | No
GRMZM2G419994 | chr4 | Wound induced protein | 0 | No | Os02g0160900 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "J075127G12")
GRMZM2G421240 | chr4 | Putative uncharacterized protein | 0 | No | Os02g0176400 | Protein of unknown function DUF872, eukaryotic family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR008590 : Protein of unknown function DUF872, euk | AT4G29850.1 | ( unknown protein )
GRMZM2G119578 | chr4 | Putative uncharacterized protein | carbohydrate binding; carbohydrate metabolic process; isomerase activity | No | Os02g0176900 | Aldose 1-epimerase family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0004034 : aldose 1-epimerase activity";GO_id "GO:0006012 : galactose metabolism";InterPro_id "IPR008183 : Aldose 1-epim | AT5G57330.1 | ( aldose 1-epimerase family protein )
GRMZM2G009854 | chr4 |  |  | No
GRMZM2G452453 | chr4 | Putative uncharacterized protein | 0 | No
AC212343.3_FG002 | chr4 | Plant integral membrane protein TIGR01569 containing protein (Putative uncharacterized protein) | 0 | No
GRMZM2G098527 | chr4 | Putative uncharacterized protein | 0 | No | Os08g0512900 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "J090030E24") | AT2G33585.1 | ( unknown protein )
GRMZM2G029087 | chr5 | Putative uncharacterized protein | 0 | No | Os02g0125300 | Bax inhibitor-1 (BI-1) (OsBI-1).";category "I : Identical to known rice protein";GO_id "GO:0016021 : integral to membrane";GO_id "GO:0043066 : negative regulation of apoptosis";InterPro_id "IPR006214 : Protein of unkn | AT5G47120.1 | ( ATBI1 (BAX INHIBITOR 1) )
GRMZM2G141325 | chr6 | Meiosis 5 | 0 | No | Os06g0553200 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK060896")
GRMZM2G150524 | chr6 | Putative uncharacterized protein | 0 | Yes
GRMZM2G121024 | chr6 | ATFP3 | metal ion binding; metal ion transport | Yes | Os08g0441700 | Peptidase aspartic, catalytic domain containing protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR009007 : Peptidase aspartic, catalytic";Representative | AT5G50740.3 | ( metal ion binding )
GRMZM2G134020 | chr6 | Putative uncharacterized protein | 0 | Yes | Os12g0111600 | Hypoxia induced protein conserved region family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR007667 : Hypoxia induced protein conserved region";Rep
GRMZM2G003461 | chr6 | Putative MURBZC | 0 | Yes
GRMZM2G098226 | chr6 |  |  | No
GRMZM2G129166 | chr6 | Putative uncharacterized protein | 0 | No | Os05g0487300 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK062926")
AC213621.5_FG002 | chr6 | Putative uncharacterized protein | 0 | No | Os05g0459600 | Protein of unknown function DUF246, plant family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR004348 : Protein of unknown function DUF246, plant";R | AT2G01480.1 | ( unknown protein )
GRMZM2G137326 | chr6 | Putative uncharacterized protein | 0 | No
GRMZM2G062527 | chr6 | [NAME] protein | 0 | No | Os05g0376800 | Gibberellin regulated protein family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR003854 : [NAME] regulated protein";Representative_sequence " | AT1G74670.1 | ( gibberellin-responsive protein, putative )
GRMZM2G175875 | chr5 |  |  | No
GRMZM2G331316 | chr6 | Putative uncharacterized protein | 0 | No
GRMZM2G406758 | chr9 | Os06g0238000 protein (Arm repeat-containing protein-like) | binding; protein ubiquitination; ubiquitin ligase complex; ubiquitin-protein ligase activity | No | Os06g0238000 | U box domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0000151 : ubiquitin ligase complex";GO_id "GO:0004842 : ubiquitin-protein ligase activity";GO_id "GO:0005488 : binding";G | AT5G62560.1 | ( armadillo/beta-catenin repeat family protein / U-box domain-containing protein )
GRMZM2G179616 | chr6 | Os06g0554200 protein (Putative uncharacterized protein P0427B07.43) | 0 | No | Os06g0554200 | Protein of unknown function DUF1677, plant family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR012876 : Protein of unknown function DUF1677, plant" | AT5G25840.1 | ( unknown protein )
GRMZM2G458761 | chr6 | Putative uncharacterized protein | 0 | No | Os06g0694800 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK070249")
GRMZM2G021155 | chr6 | Os06g0694800 protein (Putative uncharacterized protein) (cDNA clone:J023043D01, full insert sequence) (Putative uncharacterized protein P0550B04.34) (Putative uncharacterized protein P0622F03.9) | 0 | No | Os06g0694800 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK070249")
GRMZM2G121840 | chr5 | Putative uncharacterized protein | methylation; methyltransferase activity; nucleic acid binding | No | Os03g0824200 | Putative methylase family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0008168 : methyltransferase activity";GO_id "GO:0008757 : S-adenosylmethionine-dependent methyltransferase activity";In | AT3G13440.1 | ( methyltransferase/ nucleic acid binding )
GRMZM2G362609 | chr5 | Putative uncharacterized protein | 0 | No
GRMZM2G074222 | chr5 | Putative uncharacterized protein | 0 | No | Os08g0544300 | Reverse transcriptase, RNA-dependent DNA polymerase family protein.";category "III : InterPro domain-containing protein";GO_id "No significant hit available";InterPro_id "IPR013103 : Reverse transcriptase, RNA-depende
AC190834.3_FG005 | chr5 | OSJNBa0088A01.10 protein | 0 | No | Os02g0684200 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "Os02g0684200") | AT5G37030.1 | ( tRNA-splicing endonuclease positive effector-related )
GRMZM2G554962 | chr5 | Putative uncharacterized protein | 0 | No | Os04g0444700 | [NAME] (and some other nucleotide) binding motif domain containing protein.";category "III : InterPro domain-containing protein";GO_id "GO:0008757 : S-adenosylmethionine-dependent methyltransferase activity";InterPro_id | AT4G01240.1 | ( unknown protein )
GRMZM2G017869 | chr5 | Putative uncharacterized protein | hydrolase activity, acting on ester bonds; lipid metabolic process | No | Os02g0816200 | Lipolytic enzyme, G-D-S-L family protein.";category "III : InterPro domain-containing protein";GO_id "GO:0006629 : lipid metabolism";InterPro_id "IPR001087 : Lipolytic enzyme, G-D-S-L";Representative_sequence "AK06024 | AT5G33370.1 | ( GDSL-motif lipase/hydrolase family protein )
GRMZM2G128358 | chr5 | Putative uncharacterized protein | 0 | No | Os02g0788500 | Conserved hypothetical protein.";category "IV : Conserved hypothetical protein";GO_id "No significant hit available";InterPro_id "No significant hit available";Representative_sequence "AK061452") | AT3G09250.1 | ( DNA binding / nuclease )
GRMZM2G390498 | chr6 | Superoxide dismutase (EC 1.15.1.1) | metal ion binding; oxidation reduction; superoxide dismutase activity; superoxide metabolic process | No | Os06g0143000 | Iron-superoxide dismutase (EC 1.15.1.1).";category "I : Identical to known rice protein";GO_id "GO:0004784 : superoxide dismutase activity";GO_id "GO:0006801 : superoxide metabolism";GO_id "GO:0046872 : metal ion bind | [NAME] | ( FSD3 (FE SUPEROXIDE DISMUTASE 3); superoxide dismutase )
aYes indicates that gene is located within 2.6Mb deletion on chromosome 6
b use ORF of maize filter gene search against rice gene builder 4 Representative transcripts,  set alignment E-value cut of 1E-10, pick best one |  |  |  | http://rapdb.dna.affrc.go.jp/rapdownload/rep.gff
c use ORF of maize filter gene search against TAIR9 pep,  set alignment E-value cut of 1E-10, pick best one |  |  |  | TAIR9_pep_20090619