Spreadsheet: 60da23fb-e828-4c75-9aae-afa5368250d6
Sheet: Sheet1

Supplentary Table 3. Primers used for PCR and sequencing of SNP haboring regions. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7
Genome_pos | Reference | Strain | Agy99_nt | SNP | Results | Forward primer | Reversed primer
446933 | NC_008611 | NM20/02 | T | C | Multiple bands | GTATTCCGCGTAGATGCTGG | TTGTGAGGAAGCAACGACAG
1238622 | NC_008611 | NM20/02 | C | T | Multiple sequences | CATAGCGTGGTGGTGTATCG | ACCCAACTGTGGTTGGTGAT
1456807 | NC_008611 | NM20/02 | A | C | Multiple sequences | GTCAGCTGCATGACTTCGTC | ATCAACGCTGAGGGTGAGTC
1674860 | NC_008611 | NM20/02 | T | C | Multiple sequences | TAGTGATGAAGGGCTACCGC | TTGGCCGCATAGAGTTCTTC
1827152 | NC_008611 | NM20/02 | T | C | Multiple sequences | ACCAGCAGAACCTGATCTCG | CCGTAGCACTTCCAAACCAT
9877 | NC_008611 | NM20/02 | A | G | Error in Agy99 | GATGACGACAGCGAGCTCTA | CGACGTACCGGAGATGAAG
1645178 | NC_008611 | NM20/02 | C | G | Error in Agy99 | AAGAATCTACGGGCCGAACT | TGAACTCCTCGACCATCTCC
2366378 | NC_008611 | NM20/02 | A | C | Error in Agy99 | GTAGCCATAGATGGTCGCGT | ACTCGGGGTGGTCGTTTC
32013 | NC_008611 | NM20/02 | T | C | Validated | TTCGATACAGAACGTGAGCG | ACCGATGGAGTAAATGTCGG
453370 | NC_008611 | NM20/02 | A | G | Validated | GATTCGTCTTCGGGGAATCT | CTGCTAGCCGAACAGGTGAT
479253 | NC_008611 | NM20/02 | G | C | Validated | GGTCTGCCACTGATCGATTT | GTCGATGGCCAATACGACTT
554471 | NC_008611 | NM20/02 | T | C | Validated | CTCTTCCTGCACGTGTCATC | AAGTCCAGCGAGTGCAATTC
642364 | NC_008611 | NM20/02 | T | C | Validated | CAGAAGTGTCGAGGAGGTGG | TACCGACCCGAGAGATCAAC
661062 | NC_008611 | NM20/02 | T | C | Validated | GATCATCATTCCGCCCTG | AGGAACTACCACCGGAGGAC
753327 | NC_008611 | NM20/02 | C | T | Validated | CTGGATCTGGCGATACATCA | TCTTGCTCGATGGACAGTTG
1183060 | NC_008611 | NM20/02 | T | C | Validated | AGGGTTCTTCTTCCGGTGAC | GTTTGCGATCACCCGTTC
1260409 | NC_008611 | NM20/02 | A | G | Validated | TTGGGGTTGTTGTTACCCAT | TCTACGTTGCGGTAGTGGTG
1289632 | NC_008611 | NM20/02 | T | C | Validated | ATTTCATGCTCTGGGACCTG | CATACAGCTCTGCGCTCAAC
1321620 | NC_008611 | NM20/02 | G | C | Validated | AAAGACCGGACAGATCAACG | ACTTCTTCGAGATTGGTGGC
1699678 | NC_008611 | NM20/02 | A | C | Validated | CGAGTTGCTCTAGGTGGGAC | ACATGGTCGGCTACGTCTTG
1755920 | NC_008611 | NM20/02 | T | C | Validated | CTGTATCTGGTTGGCTCGGT | GAAGATGCCGACTAGCAAGG
2250461 | NC_008611 | NM20/02 | T | C | Validated | GGGTGATGCCGAAGAAGTC | ATACCCGACCATCACCGAT
2283072 | NC_008611 | NM20/02 | G | A | Validated | CGGATTGAAGTTCAGACTTGG | CTTCTTCGAGGCTGGTCTTG
2343185 | NC_008611 | NM20/02 | T | C | Validated | [NAME] | CATGACATCCCTGAATAGCG
2348891 | NC_008611 | NM20/02 | C | A | Validated | ACGGACCGGTACTCGTGATA | AATTCACGCCAATTACTCCG
2500819 | NC_008611 | NM20/02 | G | C | Validated | ATCACAATGATGATCGGCAA | CATGCGGCTTCGTTGAGTA
2501883 | NC_008611 | NM20/02 | T | G | Validated | ATAGGGATGACCAACGACCA | GATCGCTATGGAACCGATGT
2507419 | NC_008611 | NM20/02 | A | G | Validated | AGGATGAAGTGCGGAATCAC | AAACGGGAACCTATGTGCTG
2565337 | NC_008611 | NM20/02 | T | C | Validated | ATTACGCATGTCATGATCGC | GCACCGACTACGCGATATTT
2594217 | NC_008611 | NM20/02 | C | G | Validated | GGGTTGAGCAAGTGGTTGAT | GGCGTACAGATTCAGCAGGT
2631719 | NC_008611 | NM20/02 | C | A | Validated | AACGCATAGGTTGGCAGTTC | GTGTTGGAGCTGATGGACCT
2739954 | NC_008611 | NM20/02 | G | A | Validated | GTCAACTTTCATGCCAGGGT | AACGTGTGTTGTTGGACGAA
2829304 | NC_008611 | NM20/02 | A | C | Validated | CCAAGACGACCAAGACGAAT | AGACCACCATCTTGGTCCAG
2936659 | NC_008611 | NM20/02 | A | G | Validated | CAAGAAGCATGGGAACATCC | TGTAGAGCATCGAATCGCAG
3402083 | NC_008611 | NM20/02 | T | G | Validated | TCACCGAAAATCCGAAGAAC | ACGTGAGTGCTCTACCAGGC
3448338 | NC_008611 | NM20/02 | C | T | Validated | GTGGTCCGTACTGCCCTG | CGACATCCTCGATACTGCCT
3497043 | NC_008611 | NM20/02 | T | G | Validated | CTGTCACGGTCGATGGAGTA | ATGGCATTGACGGTGTCTTC
1319292 | NC_008611 | NM31/04 | T | C | No | [NAME] | CGTCTTTTCCTCCGTTCAAG
837718 | NC_008611 | NM31/04 | T | A | No | TTGGAAATTCAGGTCAAGGC | GCACATCGTAGGTGTTGAGC
284138 | NC_008611 | NM31/04 | C | A | No | ACCCGGGTAGGTCCATACAT | [NAME]
369865 | NC_008611 | NM31/04 | A | C | No | AGGTGAATATTGAGCACCCG | AATGCGGTCAACGACAATCT
517882 | NC_008611 | NM31/04 | T | C | No | CGCGGAACTATTCACTGTCA | AACAGCATCATTGCGATACG
621504 | NC_008611 | NM31/04 | G | A | No | CTATAGCAAGCGGGAAATGG | CAGCGGAAAATACCTGTGCT
1709927 | NC_008611 | NM31/04 | A | G | No | GAACGTGGACCATTTTGCTC | TCTACTGTTCGTCGGAAGGC
1222187 | NC_008611 | NM31/04 | A | C | No | ATATCTTCATCGCTGGTGGG | GACCACGTCAAGCGGATT
777933 | NC_008611 | NM31/04 | T | G | No | CCTATGGCAACGGAGGAGT | GTCGATATGTGCCACACCAC
932946 | NC_008611 | NM31/04 | G | T | No | GAGCCCGATGTTGTTATTGC | GCGTTCCTCAAGTTGGTTCA
994764 | NC_008611 | NM31/04 | C | G | No | GGGTGCGAATTCTCAACATT | CCGTGAGTTTACTGCCAACA
84015 | NC_008611 | NM31/04 | T | G | No | GTATCAGGGGAACCCAGGTC | GGCGACGTCAACTACGTCAT
291568 | NC_008611 | NM31/04 | T | C | No | ACACCGGCAACGGCTACTAC | TGTAGGCGACGGTCGAAG
1757195 | NC_008611 | NM31/04 | C | G | No | ACGATGTGGAATCCCAGGTA | GCATCGTTCTGCTGTACTCG
1125937 | NC_008611 | NM31/04 | C | A | No | ACGGATACAAGGACACGACC | GATCGCGACATTGGAGATG
812093 | NC_008611 | NM31/04 | G | T | No | CAACTACCGTCCGCAGTTCT | TCGAGGGCAAAGTAGACGAT
864321 | NC_008611 | NM31/04 | T | G | No | CATCTGGTCGAGCTCAGTGG | CAGTGTCACAATCGCCTCAA
1197914 | NC_008611 | NM31/04 | A | G | No | GATCGAGACGTTTCTGACCG | GCGGTTCGGTCTACTACCAC
1531076 | NC_008611 | NM31/04 | T | G | No | GGATTCCGTTCACGAAGGT | AAGCCGGATATATGTGGACG
321891 | NC_008611 | NM31/04 | G | C | No | AGACAGCACGTTGAGTGTCG | GCTGAATGTCAGGGGAATGT
1055484 | NC_008611 | NM31/04 | T | G | No | GGGTACATGAAGTCCTGCGT | TCAACCAGTTCGTCCAGGAG
39425 | NC_008611 | NM31/04 | G | T | No | CCATAGTGGTCGACGAAACA | CAGCAACGTCTGTGTGCC
637740 | NC_008611 | NM31/04 | T | C | No | TCTACTCGATGATCTGGGGC | AGGTTCAGCCGGTCATACAC
293549 | NC_008611 | NM31/04 | C | G | No | CTCAGCCATGGTGAAATCAA | AAACCTGTCAGAATGGACGC
1887260 | NC_008611 | Jp8756 | C | G | No | GCCGAGAAAGATGTACGAGC | [NAME]
996221 | NC_008611 | NM31/04 | C | G | No | ATCGGTTTTGTCGCACTTTC | GATCCACCGAACTGCTTACC
1575100 | NC_008611 | NM31/04 | A | C | No | TCACCCGGGTTAGTAGGTCA | TGACTACGACGCGATACTGG
12819 | NC_008611 | NM31/04 | G | T | No | [NAME] | CGTCCCTAGGACTCGCTTAG
196174 | NC_008611 | NM31/04 | A | C | No | ATCGACAGGCTGGTGAACA | CTGGAGATCTACCTGGTCGC
595512 | NC_008611 | NM31/04 | C | A | No | GATAGATTCCTGCGATCCGA | AGTGATCTCGTTCGCGATTT
50673 | NC_008611 | NM31/04 | C | G | No | TGAGTCGAGTCGGTGACATC | GAAAACGACATGACGCTGAA
630887 | NC_008611 | NM31/04 | G | T | No | GTGCCAGTAGGAGGTCTTGC | ACTTTTCGGCAACTTCGCTA
1089218 | NC_008611 | NM31/04 | A | C | No | AGCATTAGTTTGCCCCCTTT | ACAGTCTTGGTCATCATGCG
1525618 | NC_008611 | NM31/04 | G | T | No | GCTCCTACTTCTGCGAGCAT | [NAME]
1272925 | NC_008611 | NM31/04 | A | C | No | GGGATCAACGAACCAGTCAT | CGTAGCGAGGAGGATCTGTC
328722 | NC_008611 | NM31/04 | A | C | No | TCGAATCAGCTGCCATAGTG | ACGTTCGTGCGTACCTATCC
503678 | NC_008611 | NM31/04 | A | C | No | ACGAAAATGGCAATGCAGTA | ATGTGCACACCAGTTCGATG
1177130 | NC_008611 | Jp8756 | C | T | No | CATGTTTTGGAGGTCGGAAC | GGCCAACACATCGAGAAACT
655327 | NC_008611 | NM31/04 | A | C | No | GGGTGATCTTGTGTGCCTG | GTGTGGTGGAAAGCCCTGT
267280 | NC_008611 | NM31/04 | C | A | Multiple sequences | CGACGAATGTTCAACGGTAA | TTCTGCTCGAGAATGTGGG
1120077 | NC_008611 | NM31/04 | A | C | No | GGTTCATTCTGACCAGCCTC | CCGGAAGTAGTGCTCGTAGG
5217 | NC_008611 | NM31/04 | C | T | Validated | GTGGTGACCTCGCTCAAGAT | TGTCAGCGACCTCGACACT
421882 | NC_008611 | NM31/04 | C | G | No | ACCTTCGACTGCAGTGATCC | TTCGTGTTCTGTGAGCTTGG
1259303 | NC_008611 | Jp8756 | C | A | Validated | ACTGGTGATACATCGACGGC | CACGATCACCGAGCTACTCA
1009532 | NC_008611 | NM31/04 | C | T | Validated | ATTCCTCGATACAACGCTGC | CTCCCATAGCCGGATTAGGT
648886 | NC_008611 | Jp8756 | A | G | Validated | TGACCATCATCATGGGACTG | ATGCGAGCAGGAACAACAG
811383 | NC_008611 | Jp8756 | T | C | Validated | GTGTGCCCTACATCCTGGTC | GTAGACCTGGCCCTCGAACT
1266749 | NC_008611 | Jp8756 | G | A | Validated | AGAGCTGCGTGGGTAGTGAC | ATGCCAATGGAGACAGGAAC
1266361 | NC_008611 | NM31/04 | G | A | Validated | CTGCAGGACTCAAACGATCA | AGTACATCAGGAACCGGTCG
818461 | NC_008611 | Jp8756 | C | T | Validated | CTGACCGGTGATTCGTTCTT | GCCATGACTACACGGGACTT
1799372 | NC_008611 | Jp8756 | T | C | Validated | GCTACGTTACTCACGTCCCC | CCATTTACCAGGTAGCCGAC
1166649 | NC_008611 | Jp8756 | C | T | Validated | GTACACAGTTCGACCCCACC | ACCGTCTTCACCAATATCGC
544478 | NC_008611 | Jp8756 | A | G | Failed PCR | [NAME] | AGGACAGCATCGAGCAATTC
92931 | NC_008611 | Jp8756 | G | T | Validated | GGGTACGAGGTGATCGTCAG | GACTGCATCGATACCGACAG
1695491 | NC_008611 | Jp8756 | C | T | Validated | GATTTTGACGAAGACCAGGG | GGTCTCCAGGTTGTGGTTGT
1678319 | NC_008611 | Jp8756 | C | T | Validated | TCGTACGGTCCTACAAGTTGC | ATTGGTCAACATGGTCCAGC
959615 | NC_008611 | Jp8756 | G | A | Validated | CAGTGAGCTGCACCAGGC | TTGGACATCAAGCAATTCCA
127479 | NC_008611 | Jp8756 | T | C | Validated | ATGAAGGTGATGATCTGCCC | ACGACGAGTACGTCTCCACC
1390741 | NC_008611 | Jp8756 | A | G | Validated | GGCTGCTGGATGTCATTTCT | ATTGAAAGGTTGCGTTGGAC
622973 | NC_008611 | NM31/04 | C | T | Validated | CCCATCGAGTGAGTGGATTT | TGATTACGGCCCTGATTGAT
784398 | NC_008611 | Jp8756 | G | A | Validated | GATTCGTTCGAGTGGCTGAT | TGATCTCGGAGAAACCGAAC
1945518 | NC_008611 | Jp8756 | T | C | Validated | CAGACAACACCGACATCGAC | GGTGTAGCTCAACACCAGCA
1551954 | NC_008611 | Jp8756 | G | T | Validated | GCAACACCATCACCACGTT | GACGTCGTCACGGTCAACTA
878453 | NC_008611 | Jp8756 | A | C | Validated | TCACCGTTGATTTGTCTTGC | CTATGCCATCGACCCATCTT
295335 | NC_008611 | Jp8756 | G | T | Validated | GATGGAGCCGAAGACTGC | CTACGGCTTGGGCTAGCAAC
1606880 | NC_008611 | Jp8756 | A | C | Validated | TGTTGGTGCAGGAGGTGAT | AGTTCGTCGAGTTCTACGGC
1860646 | NC_008611 | Jp8756 | C | G | Validated | GCAGTGCATTGTGATCGAAG | CGAGATCGTCTCGAAGTCGT
119244 | NC_008611 | NM31/04 | T | G | Validated | GTATACCGCGCCCTCCAC | CTCAACTCGACGGAGAGGTC
204217 | NC_008611 | Jp8756 | G | A | Validated | GACTGGTCCAGCTCTTCGTC | ATCTATGCCAGCAGCACCTT
1862226 | NC_008611 | Jp8756 | A | G | Validated | GCATTGCTGGAGCTGTTGTA | CTGGTATCGGATCTGGTGCT
962708 | NC_008611 | Jp8756 | A | G | Validated | CTCCTTGGTCACTGCTTGGT | GTCTATGACATCACCGCCG
905730 | NC_008611 | Jp8756 | A | G | Validated | GAATTGACCGCCGAGTTG | GCAGTCGTCGTTGATGTTCA
1891395 | NC_008611 | Jp8756 | G | A | Validated | GTAAACGGTCACACCGTGC | TCCTCCATGGCCAGATAGAG
1131484 | NC_008611 | Jp8756 | T | A | Validated | CGATTCCGTGGAGGACAC | ACAGGTACTTCATCGACGGG
1060649 | NC_008611 | Jp8756 | G | A | Validated | GAACTGATCGGCAACGTCTC | GCTCCACGAAGAACTGACCT
656928 | NC_008611 | Jp8756 | A | G | Validated | GTTCGAGTTGCCATGAAGGT | CGTAGTGCTCTTGTGCCGT
1506702 | NC_008611 | Jp8756 | A | G | Validated | CGATACCACCGACATCGTTT | ATCTATCTCGAGGTGTGGCG
804402 | NC_008611 | Jp8756 | C | T | Validated | TCTGCCCGACTACTTCCAGT | ATACCGCTGCTCATTCTGGT
1428889 | NC_008611 | Jp8756 | C | T | Validated | GGGGAGAATCAGAAGCAGTG | CACCCGATTCATGAAGGAAG
433164 | NC_008611 | Jp8756 | G | T | Validated | GACACGCTGGGCTACATCTC | CAGTGTCGTGCTTGTCCATC
304624 | NC_008611 | Jp8756 | C | T | Validated | [NAME] | GTCATGTTTGTTCCGCAGG
1944770 | NC_008611 | Jp8756 | G | T | Validated | ACTTGAAATCCGGTTTGGTG | ATCCGCTGGTATGTCCAGTC
1629573 | NC_008611 | Jp8756 | G | T | Validated | TCAACGAATTTCCCAACCTC | CATGAAGTGGTACGTCAGCG
1282777 | NC_008611 | Jp8756 | C | T | Validated | CAGATATGGCAGCACCCAG | CTGATGTCCACCCTGCTCTC