Spreadsheet: 4725ab8d-3449-4aa7-902c-333023f5409e
Sheet: Sheet1

Unnamed: 0 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | NKY | NKY.1 | NKY.2 | NKY.3 | NKY.4 | Csuros | Csuros.1 | Csuros.2 | RG | RG.1 | RG.2 | EREM | EREM.1 | EREM.2 | EREM.3 | Dollo | Dollo.1 | Dollo.2 | Dollo.3
BranchId | From | To | From | To | Gains | Losses | Ratio | GRate | LRate | Gains | Losses | Ratio | Gains | Losses | Ratio | Gains | Losses | Ratio | Retained | Gains | Losses | Ratio | Retained
0 | 0 | 1 | Crown | Opistikant | 1331.9 | 65.9 | 0.04947818905323222 | 0.0146 | 0.08197 | 848.880459562213 | 0.149297372580446 | 0.0001758756146388881 |  |  |  | 1122.45 | 1901.44 | 1.694008641810326 | 1016.94 | 621 | 0 | 0 | 688
1 | 0 | 28 | Crown | Arabidopsis thaliana | 1535.3 | 49.5 | 0.0322412557806292 | 0.01684 | 0.06154 | 1591.48669487796 | 361.500616783061 | 0.227146490100429 |  |  |  | 128.6 | 756.99 | 5.886391912908243 | 2161.4 | 1602 | 0 | 0 | 688
2 | 1 | 4 | Opistikant | [NAME] | 110.7 | 573.2 | 5.17795844625113 | 0.00123 | 0.27691 | 96.8450912423387 | 453.65937395813 | 4.684381708340003 | 55 | 703 | 12.78181818181818 | 89.1 | 624.62 | 7.010325476992144 | 1514.77 | 161 | 199 | 1.236024844720497 | 1110
3 | 1 | 2 | Opistikant | Vertebrate | 1358.2 | 679.7 | 0.5004417611544691 | 0.0151 | 0.32836 | 1355.37888874281 | 518.529800476487 | 0.3825718437723731 | 1237 | 898 | 0.7259498787388844 | 1348.47 | 738.41 | 0.5475909734736405 | 1400.99 | 1535 | 181 | 0.1179153094462541 | 1128
4 | 2 | 3 | Vertebrate | Mammal | 51.9 | 30.7 | 0.5915221579961465 | 0.00058 | 0.01117 | 52.0044190933638 | 29.8496332981094 | 0.5739826310629526 | 45 | 40 | 0.8888888888888888 | 54.35 | 34.17 | 0.6287028518859246 | 2715.29 | 115 | 16 | 0.1391304347826087 | 2647
5 | 2 | 35 | Vertebrate | Fugu rubripes | 63 | 124.6 | 1.977777777777778 | 0.00071 | 0.04532 | 62.9956554409569 | 123.589827802012 | 1.961878592053818 | 55 | 135 | 2.454545454545455 | 59.66 | 122.11 | 2.046765001676165 | 2627.34 | 78 | 54 | 0.6923076923076923 | 2609
6 | 3 | 39 | Mammal | Homo sapiens | 26.8 | 138.6 | 5.171641791044776 | 0.0003 | 0.05003 | 5.32406973067185 | 38.073027886982 | 7.151113680507247 | 4 | 39 | 9.75 | 5.63 | 38.27 | 6.797513321492008 | 2731.37 | 10 | 35 | 3.5 | 2727
7 | 3 | 36 | Mammal | Mus musculus | 5.3 | 38.2 | 7.207547169811321 | 6e-05 | 0.01378 | 26.7549026751432 | 138.503860831453 | 5.17676563855083 | 27 | 141 | 5.222222222222222 | 26.64 | 138.28 | 5.19069069069069 | 2631.36 | 28 | 132 | 4.714285714285714 | 2630
8 | 4 | 5 | [NAME] | Dikarya | 17.4 | 132.7 | 7.626436781609195 | 0.00019 | 0.08253 | 14.177484962275 | 115.278019607775 | 8.131062731825802 | 120 | 97 | 0.8083333333333333 | 0 | 131.34 |  | 1472.53 | 57 | 158 | 2.771929824561404 | 1113
9 | 4 | 43 | [NAME] | Rhizopus oryzae | 148.2 | 808.8 | 5.457489878542511 | 0.00164 | 0.50312 | 148.237338797858 | 753.168140176798 | 5.080826101471279 | 136 | 969 | 7.125 | 149.11 | 805.98 | 5.405271276239017 | 797.89 | 194 | 518 | 2.670103092783505 | 753
10 | 5 | 9 | Dikarya | Ascomycota | 348.2 | 688.8 | 1.978173463526709 | 0.00385 | 0.46155 | 155.242253729573 | 665.644932073776 | 4.287781941334786 | 424 | 777 | 1.832547169811321 | 346.86 | 672.22 | 1.938015337600185 | 800.32 | 19 | 800 | 42.10526315789474 | 370
11 | 5 | 6 | Dikarya | Basidiomycota | 340.4 | 341.4 | 1.002937720329025 | 0.00376 | 0.22875 | 329.248450199647 | 304.020317478183 | 0.9233766090435161 | 330 | 485 | 1.46969696969697 | 351.05 | 340.8 | 0.9708018800740635 | 1131.74 | 18 | 90 | 5 | 1080
12 | 6 | 7 | Basidiomycota | Hymenometes | 0 | 0 |  | 0 | 0 | 0.805243989319792 | 0.0101048276683728 | 0.0125487775163756 | 0 | 0 |  | 0.08 | 0.01 | 0.125 | 1482.78 | 257 | 1 | 0.003891050583657588 | 1097
13 | 6 | 47 | Basidiomycota | Ustilago maydis | 31 | 1436.3 | 46.33225806451613 | 0.00034 | 0.96315 | 31.0479723118359 | 1421.10637176673 | 45.77131020002184 | 30 | 1591 | 53.03333333333333 | 31.34 | 1428.13 | 45.56892150606254 | 54.66 | 30 | 1042 | 34.73333333333333 | 56
14 | 7 | 8 | Hymenometes | Homobasidiomycetes | 306.5 | 125.7 | 0.4101141924959217 | 0.00339 | 0.08427 | 303.823100340236 | 112.581398015035 | 0.3705491711754664 | 270 | 209 | 0.774074074074074 | 309.48 | 122.86 | 0.3969884968333979 | 1359.99 | 347 | 97 | 0.2795389048991355 | 1257
15 | 7 | 32 | Hymenometes | Cryptococcus neoformans | 620.7 | 534 | 0.8603189946834219 | 0.00686 | 0.35805 | 620.700174345759 | 519.553712962313 | 0.8370445739119405 | 570 | 635 | 1.114035087719298 | 624.39 | 529.24 | 0.8476112685981518 | 953.61 | 610 | 386 | 0.6327868852459017 | 968
16 | 8 | 42 | Homobasidiomycetes | Phanerochaete chrysosporium | 102.6 | 159.7 | 1.556530214424951 | 0.00114 | 0.09548 | 102.577842451334 | 155.673083393089 | 1.517609258226941 | 90 | 179 | 1.988888888888889 | 104.21 | 158.68 | 1.52269455906343 | 1510.79 | 130 | 119 | 0.9153846153846154 | 1485
17 | 8 | 29 | Homobasidiomycetes | Coprinopsis cinerea | 110.9 | 162 | 1.460775473399459 | 0.00123 | 0.0969 | 110.945248462039 | 158.040489403794 | 1.424490833042472 | 96 | 179 | 1.864583333333333 | 111.74 | 160.21 | 1.433774834437086 | 1509.26 | 136 | 119 | 0.875 | 1485
18 | 9 | 10 | Ascomycota | [NAME] | 174 | 343.8 | 1.975862068965517 | 0.00192 | 0.29853 | 181.409802602059 | 162.749246356717 | 0.897135899065632 | 188 | 454 | 2.414893617021276 | 183.02 | 338.24 | 1.848104032346192 | 808.93 | 4 | 96 | 24 | 293
19 | 9 | 46 | Ascomycota | Schizosaccharomyces pombe | 21.3 | 959 | 45.02347417840375 | 0.00023 | 0.83265 | 21.4419608478637 | 747.8695492371 | 34.87878531928257 | 13 | 1249 | 96.07692307692308 | 21.85 | 955.02 | 43.70800915331807 | 192.15 | 61 | 236 | 3.868852459016393 | 153
20 | 10 | 19 | [NAME] | Hemiascomycota | 3.4 | 957 | 281.4705882352941 | 4e-05 | 0.9746 | 0.186814551388168 | 930.581337779453 | 4981.310775121942 | 4 | 1159 | 289.75 | 3.31 | 966.85 | 292.0996978851963 | 25.1 | 2 | 278 | 139 | 19
21 | 10 | 11 | [NAME] | Euascomycota | 94.2 | 577 | 6.125265392781317 | 0.00103 | 0.58762 | 4.46143172146461 | 473.283486335467 | 106.0833194103207 | 93 | 682 | 7.333333333333333 | 91.07 | 587.55 | 6.45163061381355 | 404.4 | 124 | 9 | 0.07258064516129033 | 288
22 | 11 | 45 | Euascomycota | Stagonospora nodorum | 129.3 | 225.4 | 1.74323279195669 | 0.00141 | 0.45163 | 129.45631538075 | 216.722405401325 | 1.67409681608744 | 117 | 308 | 2.632478632478632 | 130.31 | 222.78 | 1.709615532192464 | 272.69 | 132 | 141 | 1.068181818181818 | 271
23 | 11 | 12 | Euascomycota | Eurotiales-Sordariomycetes | 0 | 13.2 |  | 0 | 0.02635 | 0.716943996987631 | 10.1910429144205 | 14.21455923648151 | 0 | 24 |  | 0 | 11.42 |  | 484.05 | 64 | 16 | 0.25 | 396
24 | 12 | 17 | Eurotiales-Sordariomycetes | Eurotiales | 62 | 64.8 | 1.045161290322581 | 0.00068 | 0.13332 | 62.0138992831862 | 59.85497764081 | 0.965186487749827 | 54 | 107 | 1.981481481481481 | 63.21 | 64.98 | 1.028001898433792 | 419.07 | 81 | 52 | 0.6419753086419753 | 408
25 | 12 | 13 | Eurotiales-Sordariomycetes | Sordariomycetes | 50.8 | 167.9 | 3.305118110236221 | 0.00056 | 0.34551 | 50.5740333310107 | 162.900716803221 | 3.221034710382382 | 48 | 200 | 4.166666666666667 | 50.7 | 167.39 | 3.301577909270216 | 316.66 | 49 | 127 | 2.591836734693878 | 333
26 | 13 | 14 | Sordariomycetes | (Mgri-Ncra) | 6.9 | 21.5 | 3.115942028985507 | 8e-05 | 0.05824 | 6.82061137581084 | 21.1876366831062 | 3.106413122766051 | 4 | 26 | 6.5 | 6.74 | 21.47 | 3.185459940652819 | 345.89 | 9 | 24 | 2.666666666666667 | 358
27 | 13 | 34 | Sordariomycetes | Fusarium graminearum | 35.2 | 32 | 0.9090909090909091 | 0.00038 | 0.08687 | 35.2139696247153 | 31.6792772556463 | 0.8996224394256268 | 31 | 59 | 1.903225806451613 | 35.46 | 30.82 | 0.8691483361534122 | 336.54 | 35 | 45 | 1.285714285714286 | 337
28 | 14 | 15 | (Mgri-Ncra) | Sordariales | 58.5 | 37.9 | 0.6478632478632479 | 0.00064 | 0.10709 | 58.0878962344896 | 37.786140484706 | 0.650499379977038 | 62 | 40 | 0.6451612903225806 | 58.27 | 37.75 | 0.647846233053029 | 314.88 | 48 | 34 | 0.7083333333333334 | 333
29 | 14 | 38 | (Mgri-Ncra) | Magnaporthe grisea | 59 | 45.3 | 0.7677966101694915 | 0.00064 | 0.1278 | 59.0060815560595 | 45.1043638796951 | 0.7644019512945137 | 58 | 68 | 1.172413793103448 | 59.53 | 44.16 | 0.7418108516714261 | 308.47 | 59 | 58 | 0.9830508474576272 | 309
30 | 15 | 16 | Sordariales | (Pans-Cglo) | 32.7 | 12.9 | 0.3944954128440367 | 0.00036 | 0.03445 | 32.4842049294529 | 12.5959572964029 | 0.3877563672485748 | 23 | 14 | 0.6086956521739131 | 33.03 | 12.52 | 0.379049349076597 | 360.63 | 26 | 12 | 0.4615384615384616 | 369
31 | 15 | 40 | Sordariales | Neurospora crassa | 21.9 | 60.7 | 2.771689497716895 | 0.00024 | 0.16196 | 21.9212535383748 | 60.3212916117939 | 2.751726378521053 | 21 | 85 | 4.047619047619047 | 22.29 | 59.44 | 2.666666666666667 | 313.71 | 23 | 68 | 2.956521739130435 | 313
32 | 16 | 31 | (Pans-Cglo) | Chaetomium globsum | 83.2 | 14.8 | 0.1778846153846154 | 0.00091 | 0.03761 | 83.2507709781157 | 14.5390566845847 | 0.1746417061819958 | 77 | 23 | 0.2987012987012987 | 83.96 | 14.62 | 0.174130538351596 | 379.04 | 84 | 16 | 0.1904761904761905 | 379
33 | 16 | 41 | (Pans-Cglo) | Podospora anserina | 45.2 | 80.8 | 1.787610619469026 | 0.00049 | 0.20485 | 45.2424165856073 | 80.5307022920765 | 1.779982334491285 | 40 | 90 | 2.25 | 45.41 | 80.08 | 1.763488218454085 | 313.59 | 41 | 77 | 1.878048780487805 | 318
34 | 17 | 18 | Eurotiales | (Afum-Ater) | 0 | 3.1 |  | 0 | 0.00634 | 0.109971025842664 | 3.0163080773733 | 27.42820715057023 | 0 | 8 |  | 0 | 2.75 |  | 479.52 | 2 | 6 | 3 | 483
35 | 17 | 26 | Eurotiales | Aspergillus nidulans | 19.5 | 33.6 | 1.723076923076923 | 0.00021 | 0.06964 | 19.5342225031952 | 33.4851352487135 | 1.714178040269397 | 16 | 46 | 2.875 | 19.84 | 33.12 | 1.669354838709677 | 449.16 | 17 | 37 | 2.176470588235294 | 452
36 | 18 | 27 | (Afum-Ater) | Aspergillus terreus | 20 | 26.1 | 1.305 | 0.00022 | 0.05428 | 20.0088795776503 | 26.053455271638 | 1.302094661049358 | 18 | 31 | 1.722222222222222 | 20.32 | 25.84 | 1.271653543307087 | 453.68 | 18 | 29 | 1.611111111111111 | 456
37 | 18 | 24 | (Afum-Ater) | Aspergillus fumigatus | 13.6 | 12.7 | 0.9338235294117647 | 0.00015 | 0.02643 | 13.6287420567674 | 12.6733177507551 | 0.9298963688627535 | 10 | 15 | 1.5 | 13.83 | 12.35 | 0.8929862617498192 | 467.17 | 10 | 14 | 1.4 | 471
38 | 19 | 20 | Hemiascomycota | (Dhan-Scer)/Saccharomycetes | 1 | 22.3 | 22.3 | 1e-05 | 0.78823 | 0.999993567022099 | 22.6936036882881 | 22.69374967667826 | 2 | 23 | 11.5 | 1 | 22.42 | 22.42 | 6 | 1 | 15 | 15 | 6
39 | 19 | 48 | Hemiascomycota | Yarrowia lipolytica | 1.7 | 0 | 0 | 2e-05 | 0 | 1.30655449069457 | 0.000175897206998025 | 0.0001346267670049623 | 2 | 0 | 0 | 1.58 | 0 | 0 | 28.42 | 9 | 0 | 0 | 21
40 | 20 | 21 | (Dhan-Scer)/Saccharomycetes | (Scer-Agos) | 0 | 0 |  | 0 | 0 | 0 | 0 |  | 0 | 0 |  | 0 | 0 |  | 7 | 0 | 0 |  | 7
41 | 20 | 33 | (Dhan-Scer)/Saccharomycetes | Debaryomyces hansenii | 0 | 2 |  | 0 | 0.28571 | 0 | 0 |  | 0 | 3 |  | 0 | 2 |  | 5 | 0 | 2 |  | 5
42 | 21 | 23 | (Scer-Agos) | Kluyveromyces | 0 | 0 |  | 0 | 0 | 0 | 0 |  | 0 | 0 |  | 0 | 0 |  | 7 | 0 | 0 |  | 7
43 | 21 | 22 | (Scer-Agos) | (Scer-Cgla) | 0 | 0 |  | 0 | 0 | 0 | 0 |  | 0 | 0 |  | 0 | 0 |  | 7 | 0 | 0 |  | 7
44 | 22 | 30 | (Scer-Cgla) | Candida glabrata | 0 | 1 |  | 0 | 0.14286 | 0 | 0 |  | 0 | 1 |  | 0 | 1 |  | 6 | 0 | 1 |  | 6
45 | 22 | 44 | (Scer-Cgla) | Saccharomyces cerevisiae | 0 | 0 |  | 0 | 0 | 0 | 0 |  | 0 | 0 |  | 0 | 0 |  | 7 | 0 | 0 |  | 7
46 | 23 | 25 | Kluyveromyces | Ashbya gossypii | 0 | 1 |  | 0 | 0.14286 | 0 | 0 |  | 0 | 0 |  | 0 | 0 |  | 7 | 0 | 0 |  | 7
47 | 23 | 37 | Kluyveromyces | Kluyveromyces lactis | 0 | 0 |  | 0 | 0 | 0 | 1.0000000021229 |  | 0 | 1 |  | 0 | 1 |  | 6 | 0 | 1 |  | 6