Spreadsheet: ed9a0df5-ac0a-46ef-9d46-fd1acd4841d4
Sheet: Sheet1

Table 3S: Raw data (allelic fractions) used to determine haplotypes of strain T118. | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6
Chr | unifier ID | SNP | Contig19 | D9-330 | D11-330
ChR
RM | 12 | 1642/2179 | 19-10040 | 0.6552640770522901 | 0.3427745664739884
RM | 2 | 1381/2345 | 19-10161 | 0.6313704381495839 | 0.4109377439288328
RM | 1 | B13B19 | 19-10161 | 0.3534240663320406 | 0.735544293274598
RK | 10 | 1625/2453 | 19-10203A | 0.3236688811084229 | 0.5684702787858701
RK | 9 | 1458/2280 | 19-10203C | 0.4334869890033431 | 0.6134406348170177
RK | 13 | 1560/2471 | 19-10053 | 0.7009852390501371 | 0.322635100542243
RK | 6 | 1694/2254 | 19-10063 | 0.513532060347268 | 0.6211381308342767
RK | 5 | 1477/2396 | 19-10193 | 0.3677978795815643 | 0.6670755367924129
RS,U | 45 | 1541/2137 | 19-10070A | 0.6643079473569298 | 0.3449341823390837
RS,U | 150 | 1891/2157 | 19-10147 | 0.6228966079207393 | 0.4364375555968356
RS,U | 19 | 2060/2400 | 19-10188 | 0.368218774845938 | 0.6053181274001077
RS,U | 18 | 1772/2368 | 19-10057A | 0.3510711118841393 | 0.6511729718512019
RB2 | 16 | 1158/2429 | 19-10247 | 0.6717567367554526 | 0.1833476418000146
Chr | unifier ID | SNP | Contig19 | D11-330 | D12-330
Ch1
1S | 23 | 1799/2450 | 19-10237 | 0.5933427445400248 | 0.9426243562652168
1S | 22 | 1322/2294 | 19-10237 | 0.3397273332500049 | 0.05085121041928043
1S | 28 | 1449/2362 | 19-10173 | 0.5490288564604707 | 0.6557035936638764
1S | 29 | 1363/2056 | 19-10186 | 0.5562301737437068 | 0.6981736002918228
1S | 26 | 2281/2302 | 19-10163 | 0.6883378440190151 | 0.9800085489804934
1S | 27 | 2032/2371 | 19-10163 | 0.3863691494615883 | 0.2291838821059631
1S | 24 | MNS1 | 19-10087 | 0.3819505194894275 | 0.04751441551085054
1S | 25 | 2036/2375 | 19-10087 | 0.3245189715120267 | 0.08132857205566313
1 | 46 | 1584/2265 | 19-10073 | 0.655504766723812 | 0.9140960722562866
1 | 8 | 1983/2203 | 19-10052 | 0.3211041608729742 | 0.1980463936768223
1CC,1A | 41 | 2347/2406 | 19-10241 | 0.6893103184955258 | 0.9742742235643236
1B | 39 | CPH1 | 19-10205 | 0.6111898618861742 | 0.9695140475571247
1(J) | 38 | 2262/2275 | 19-10159 | 0.3971387370745594 | 0.1823277293845975
1J | 33 | 1179/2238 | 19-10218 | 0.654024421123552 | 0.7552275647061508
1J | 32 | F12n4 | 19-10218 | 0.3775527567654515 | 0.1174544106931831
1J | 34 | 1794/2304 | 19-10215 | 0.1650978446315604 | 0.1566852336877934
1J | 35 | 1916/2198 | 19-10215 | 0.359031828912849 | 0.0915971453126753
1J | 36 | 1556/2491 | 19-10215 | 0.6125081197878592 | 0.9722864525882263
1E | 30 | 1622/2428 | 19-10081 | 0.3739759208537387 | 0.060640547955452
1E | 31 | 1361/2464 | 19-10064 | 0.3198465926549477 | 0.0519365613505645
1 | 147 | 2080/2297 | 19-10191 | 0.4152800149136027 | 0.2859678954775108
1 | 42 | 2106/2441 | 19-10216 | 0.324238139546288 | 0.05580250369254328
1 | 43 | 1729/2211 | 19-10216 | 0.3551479080798928 | 0.04273046970529219
Chr | unifier ID | SNP | Contig19 | D9-330
Ch2
2U | 48 | 1353/2363 | 19-10139 | 0.6210467179809843
2U | 49 | 1551/2437 | 19-10139 | 0.3517197534735902
2U | 60 | 2051/2483 | 19-10119 | 0.3903759018185183
2U | 61 | 1517/2458 | 19-10119 | 0.3493645974922976
2U | 58 | 2370/2467 | 19-10234 | 0.3875859106951873
2U | 57 | 1283/2296 | 19-10076 | 0.6197910501496496
2U | 56 | 1398/2125 | 19-10076 | 0.3537640714550805
2U | 55 | 2184/2321 | 19-10208 | 0.340916403886994
2U | 63 | 1760/2185 | 19-10044 | 0.3898741670471743
2U | 59 | 1337/2356 | 19-10183 | 0.7223559515056236
2U | 64 | 1709/2474 | 19-10196A | 0.396422796271691
2U | 51 | 2001/2434 | 19-10014 | 0.6529577841288753
2U | 54 | 1775/2077 | 19-10143 | 0.4040749132041062
2U | 53 | 1414/2481 | 19-10135 | 0.610521712034434
2U | 52 | 2242/2334 | 19-10141 | 0.3525192087041518
2U | 65 | 1262/2474 | 19-10196B | 0.5827025196396698
2U | 66 | 2046/2319 | 19-10113 | 0.6371824966318851
2U | 67 | 1600/2122 | 19-10125 | 0.5859680078652744
2U | 68 | 1314/2038 | 19-10125 | 0.667967648522837
Chr | unifier ID | SNP | Contig19 | D9-330 | D11-330
Ch3
3P | 73 | 1423/2317 | 19-10227 | 0.05358175986570937 | 0.03852796814917209
3P | 44 | 2091/2447 | 19-10150 | 0.4078917998857969 | 0.4068250638051321
3P | 76 | 2195/2207 | 19-10123 | 0.3422011194700703 | 0.303087572237849
3P | 75 | 1848/2210 | 19-10123 | 0.3158825998618318 | 0.3415225420783263
3P | 74 | 1808/1882 | 19-10123 | 0.3220401660422973 | 0.3194076445214764
3P | 77 | 1629/1863 | 19-10046 | 0.6818380569784427 | 0.6456783599590943
3P | 78 | 2095/2215 | 19-10046 | 0.6633164583736412 | 0.6697766363383173
3P | 79 | 1838/2419 | 19-10046 | 0.4136558292677233 | 0.4311401927666111
3P | 81 | 1442/2490 | 19-10254 | 0.08261026054743247 | 0.06908115310501357
3O | 71 | 1765/2519 | 19-10236 | 0.654220602399612 | 0.6585243481376496
Chr | unifier ID | SNP | Contig19 | D12-260 | D12-330
Ch4
4N | 83 | 2346/2476 | 19-10231 | 0.3463282329434055 | 0.3768825684256733
4N | 84 | 1335/2442 | 19-10200 | 0.2473816149998394 | 0.3809362188869438
4N | 91 | 2309/2408 | 19-10212 | 0.3307532409346925 | 0.3646201167040694
4N | 89 | 2004/2043 | 19-10212 | 0.68645006672414 | 0.6112815172755364
4N | 90 | 2101/2204 | 19-10212 | 0.3818384070312825 | 0.4093226375411839
4N | 88 | 1881/2465 | 19-10158 | 0.6502033643829379 | 0.5831133609487498
4N | 87 | 1644/2359 | 19-10158 | 0.5897290599330058 | 0.577058258620035
4N | 86 | 1685/2366 | 19-10158 | 0.3408771050242716 | 0.3547773931279782
4N | 92 | 1826/2182 | 19-10174 | 0.2889265940887183 | 0.3460675016652959
4N | 85 | 2159/2205 | 19-10109 | 0.4164985894506791 | 0.4226754661565407
4F2 | 70 | 1771/2510 | 19-10225 | 0.2791396082281012 | 0.3178039366152526
4F2 | 93 | 1463/2009 | 19-10192 | 0.4896717443241328 | 0.4811666995925044
4F2 | 94 | 2084/2131 | 19-10192 | 0.3424027513664176 | 0.3823659142853836
4F2 | 96 | 2074/2337 | 19-10126 | 0.6390119239208227 | 0.5618243199572358
4H | 98 | 2145/2386 | 19-10104 | 0.3689030650381637 | 0.3619888725249366
4H | 97 | 2061/2424 | 19-10104 | 0.3555162711255335 | 0.3910439025411456
4H | 95 | 1654/2166 | 19-10204 | 0.616555643856085 | 0.5862493423931876
4H | 99 | 1462/2445 | 19-10162 | 0.6873806996228417 | 0.6532191852607766
4H | 101 | 2006/2431 | 19-10166 | 0.6421485733301742 | 0.6238564047548791
4H | 100 | 1544/2477 | 19-10166 | 0.3504854570418914 | 0.3801510847526212
Chr | unifier ID | SNP | Contig19 | D8-330 | D9-165 | D12-165
Ch5
5M | 102 | 1855/2172 | 19-10080 | 0.2998769475021834 | 0.3230754677041645 | 0.3512490397306117
5M | 109 | 1899/2008 | 19-10137 | 0.8343544002000056 | 0.837780158185301 | 0.8611478375866194
5M | 106 | SNF1 | 19-10137 | 0.7965221436555362 | 0.6415665569018252 | 0.3277797149686835
5M | 103 | HST3 | 19-10137 | 0.9148396582768614 | 0.7095248135960424 | 0.290519857497219
5M | 111 | 1969/2162 | 19-10202 | 0.8055625267078697 | 0.7974672633278795 | 0.7973759266911008
5I | 114 | DPH5 | 19-10093 | 0.05464953084683249 | 0.1009342867871886 | 0.09233990310827224
5I | 116 | 2093/2390 | 19-10194 | 0.07896547321946949 | 0.08635670551527935 | 0.04875679124109024
5I | 117 | 1817/2082 | 19-10194 | 0.2297203316196181 | 0.1494023028406946 | 0.129901447672209
5I | 118 | 1341/2493 | 19-10194 | 0.9070275355331522 | 0.8492512669386975 | 0.8396903703762721
5I | 120 | 2340/2493 | 19-10194 | 0.974363819600858 | 0.9646644815227834 | 0.9708222840389746
Chr | unifier ID | SNP | Contig19 | T118 | D9-165
Ch6
6O | 121 | 2154/2381 | 19-10201 | 0.1001396372708968 | 0.1325291058880008
6O | 122 | 1578/2118 | 19-10035 | 0.8806364528841291 | 0.925430737959705
6O | 124 | B15B20 | 19-10176 | 0.126982010001049 | 0.07292237512059127
6O | 123 | 1534/2336 | 19-10181 | 0.8666279047516491 | 0.8864725710730628
6O | 126 | 1735/2343 | 19-10230 | 0.88484058055962 | 0.9205893685945092
6O | 127 | 1870/2315 | 19-10230 | 0.9494185501034715 | 0.9602943275533369
6O | 128 | 1395/2385 | 19-10230 | 0.05353547144488756 | 0.03260248855897648
6O | 129 | 1372/2355 | 19-10233 | 0.05394110533926856 | 0.0422161927935101
6O | 130 | 1624/2448 | 19-10233 | 0.9551282762528869 | 0.9761568388966553
6C | 131 | 1466/1889 | 19-10031 | 0.5314741527232381 | 0.5006501576051664
6C | 132 | 2114/2404 | 19-10140 | 0.9539490879685995 | 0.9698956361069462
Chr | unifier ID | SNP | Contig19 | D9-330 | D12-165
Ch7
7F | 135 | YDL114 | 19-10248 | 0.5785534308354405 | 0.4195422210259607
7F | 136 | YKL084 | 19-10248 | 0.7404446929369639 | 0.3743082933056835
7F | 137 | 2397/2498 | 19-10248 | 0.7349663872308598 | 0.3524746483854967
7G | 138 | RBP1 | 19-10187 | 0.2755253463025318 | 0.6572507919037378
7G | 140 | YJL54 | 19-10219 | 0.3100210642878224 | 0.5975807869718042
7G | 141 | 6.1345 | 19-10110 | 0.7867438431761623 | 0.7634796525448768
7G | 144 | 6.282/2 | 19-10253 | 0.6835792449294522 | 0.3641688047332851
 |  | Chr | SNP | Contig19 | T118
 |  | 6 | 2154/2381 | 19-10201 | 0.1001396372708968
 |  | 6 | 1578/2118 | 19-10035 | 0.8806364528841291
 |  | 6 | B15B20 | 19-10176 | 0.126982010001049
 |  | 6 | 1534/2336 | 19-10181 | 0.8666279047516491
 |  | 6 | 1735/2343 | 19-10230 | 0.88484058055962
 |  | 6 | 1870/2315 | 19-10230 | 0.9494185501034715
 |  | 6 | 1395/2385 | 19-10230 | 0.05353547144488756
 |  | 6 | 1372/2355 | 19-10233 | 0.05394110533926856
 |  | 6 | 1624/2448 | 19-10233 | 0.9551282762528869
 |  | 6 | 2114/2404 | 19-10140 | 0.9539490879685995