Spreadsheet: 36052958-bb74-4f2d-a9b8-3a1e614c30d5
Sheet: 81-176

Table S11. sRNA candidates in the chromosomes of four C. jejuni strains - 81-176.
This table lists sRNA candidates in strain 81-176.
sRNA | Strand | Start | End | Length | Orientation | LFG | RFG | LFG Description | RFG Description | Comments
SRP RNA | + | 77292 | 77399 | 108 | <>> | CJJ81176_0083 | CJJ81176_0084 | hypothetical protein | hypothetical protein | Detected on Northern blot
CJnc10 | + | 104892 | 104987 | 96 | >>< | CJJ81176_0119 | CJJ81176_0120 | cydB | putative aspartate racemase | Detected on Northern blot
CJnc20 | - | 251065 | 250910 | 156 | <<< | CJJ81176_0292 | CJJ81176_0292 | putative cytochrome C-type haem-binding periplasmic protein | hypothetical protein | Detected on Northern blot
TPP | + | 420087 | 420222 | 136 | >>> | CJJ81176_0477 | CJJ81176_0478 | DNA polymerase III subunit epsilon | thiamine biosynthesis protein (thiC) | Detected in dRNA-seq data. Not Probed on Northern blot.
RnpB | - | 510809 | 510493 | 317 | ><> | CJJ81176_0575 | CJJ81176_0576 | hypothetical protein | elongation factor P | Detected on Northern blot
Cjnc60 | - | 667532 | 667252 | 281 | ><> | CJJ81176_0740 | CJJ81176_0741 | hypothetical protein | DNA polymerase III subunit alpha | Detected on Northern blot. Note: Probably corresponds to a small mRNA. Contains non-annotated selW ORF [1].
CJnc70 | + | 873863 | 873958 | 96 | >>> | CJJ81176_1733 | CJJ81176_0945 | tRNA-Leu | hypothetical protein | Detected in dRNA-seq data. Also antisense to CJnc50. Not Probed on Northern blot.
CJnc80 | - | 873984 | 873887 | 98 | ><> | CJJ81176_1733 | CJJ81176_0945 | tRNA-Leu | hypothetical protein | Detected on Northern blot. Also antisense to CJnc70
CJnc110 | + | 1129654 | 1129790 | 137 | >>> | CJJ81176_1213 | CJJ81176_1214 | S-ribosylhomocysteinase | 2OG-Fe(II) oxygenase family oxidoreductase | Detected on Northern blot
CJnc120 | + | 1152714 | 1152810 | 97 | >>< | CJJ81176_1233 | CJJ81176_1235 | groES | sensor histidine kinase | Detected on Northern blot (processed from 3’ end of CJJ81176_1234)
6S RNA (CJnc130) | + | 1181243 | 1181428 | 186 | >>> | CJJ81176_1265 | CJJ81176_1266 | hypothetical protein | phosphoribosylamine--glycine ligase | Detected on Northern blot
pRNA | - | 1181279 | 1181266 | 14 | ><> | CJJ81176_1265 | CJJ81176_1266 | hypothetical protein | phosphoribosylamine--glycine ligase | Detected in dRNA-seq data. Not Probed on Northern blot.
[NAME] | + | 1190581 | 1190653 | 73 | >>> | CJJ81176_1274 | CJJ81176_1275 | putative phosphotyrosine protein phosphatase | major outer membrane protein (porA) | Detected on Northern blot
tmRNA | - | 1278617 | 1278259 | 359 | ><< | CJJ81176_1361 | CJJ81176_1363 | polyphosphate kinase (ppk) | hypothetical protein | Detected on Northern blot
CJnc150 | - | 1371923 | 1371843 | 81 | ><< | CJJ81176_1448 | CJJ81176_1449 | peptide chain release factor 2 | hypothetical protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJnc160 | + | 1531082 | 1531108 | 27 | <>< | CJJ81176_1616 | CJJ81176_1617 | serine transporter | hypothetical protein | Detected in dRNA-seq data. Not probed on Northern blot. (low reads)
CJnc170 | + | 1536225 | 1536271 | 47 | >>< | CJJ81176_1624 | CJJ81176_1625 | hypothetical protein | chorismate synthase (aroC) | Detected on Northern blot
CJnc180 | + | 1551563 | 1551717 | 100 | >>< | CJJ81176_1641 | CJJ81176_1642 | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc190
CJnc190 | - | 1551808 | 1551592 | 217 | ><< | CJJ81176_1641 | CJJ81176_1642 | hypothetical protein | methionine aminopeptidase | Detected on Northern blot. Also antisense to CJnc180.
CJnc230 | - | 1613203 | 1613106 | 98 | <<< | CJJ81176_0023 | CJJ81176_0025 | homoserine O-acetyltransferase | flagellar hook protein (flgE) | Detected in dRNA-seq data. Processed sRNA sense to CJJ81176_0024. Not Probed on Northern blot.
CJas_Cj0363c | + | 333353 | 333435 | 83 | >>> | CJJ81176_0384 | CJJ81176_0387 | [NAME] peptidase | hypothetical protein | Detected in dRNA-seq data. Transcribed from the 3’ end of CJJ81176_0385. Antisense to CJJ81176_0386 (coproporphyrinogen III oxidase). Not Detected on Northern blot.
CJas_Cj0704 | - | 657528 | - | >100 | ><> | CJJ81176_0726 | CJJ81176_0728 | hypothetical protein | hypothetical protein | Detected on Northern blot. Antisense to CJJ81176_0727 (glycyl-tRNA synthetase subunit alpha)
CJas_Cj1667c | + | 1566196 | - | >100 | <>< | CJJ81176_1657 | CJJ81176_1659 | hypothetical protein | hypothetical protein | Detected on Northern blot. Antisense to CJJ81176_1658 (hypothetical protein)
CJas_Cj0168c | + | 176666 | - | >100 | >>> | CJJ81176_1710 | CJJ81176_0205 | tRNA-Glu | superoxide dismutase | Detected in dRNA-seq data. Antisense to Cj0168c (putative periplasmic protein). Not Detected on Northern blot.
CJas_CJJ81176_1020 | + | 940021 | - | >100 | >>< | CJJ81176_1019 | CJJ81176_1021 | RNA polymerase sigma factor (rpoD) | rhomboid family protein | Detected in dRNA-seq data. Antisense to CJJ81176_1020 (phosphohistidine phosphatase SixA). Not Detected on Northern blot.
[1] Gursinsky, [NAME]. Factors and selenocysteine insertion sequence requirements for the synthesis of selenoproteins from a gram-positive anaerobe in Escherichia coli. Appl Environ Microbiol 74, 1385-1393 (2008).