Spreadsheet: 8220414e-db6d-444c-9925-6e98b0fbd221
Sheet: Sheet1

DREAM5: ME to HK prediction correlations | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9 | Unnamed: 10 | Unnamed: 11
Pearson correlations |  |  |  |  |  |  |  |  |  | Abbreviations and terms
TF | HMIK | LINEAR | LF + LINEAR | LF + SD + LINEAR | QN + LINEAR | LF + QN + LINEAR | LF + SD + QN + LINEAR |  |  | TF | Transcription factor
Cebpb | 0.596 | 0.514 | 0.515 | 0.516 | 0.491 | 0.491 | 0.494 |  |  | HMIK | Highest median intensity K-mer predictor
Egr2 | 0.669 | 0.739 | 0.739 | 0.74 | 0.721 | 0.721 | 0.726 |  |  | LF | Low intensity probe filtering
Esr1 | 0.449 | 0.584 | 0.584 | 0.587 | 0.614 | 0.614 | 0.607 |  |  | SD | Spatial detrending
Foxj2 | 0.624 | 0.519 | 0.519 | 0.528 | 0.574 | 0.574 | 0.59 |  |  | QN | Quantile normalization
[NAME] | 0.692 | 0.626 | 0.627 | 0.645 | 0.635 | 0.635 | 0.615
Foxo3 | 0.538 | 0.7 | 0.699 | 0.704 | 0.723 | 0.723 | 0.727
Foxo4 | 0.768 | 0.736 | 0.736 | 0.739 | 0.77 | 0.759 | 0.773
Foxp1 | 0.619 | 0.58 | 0.581 | 0.585 | 0.557 | 0.557 | 0.55
Foxp2 | 0.54 | 0.347 | 0.347 | 0.352 | 0.376 | 0.376 | 0.385
Gmeb2 | 0.564 | 0.629 | 0.629 | 0.638 | 0.773 | 0.775 | 0.767
Irf2 | 0.61 | 0.677 | 0.677 | 0.674 | 0.64 | 0.64 | 0.638
[NAME] | 0.297 | 0.647 | 0.651 | 0.662 | 0.65 | 0.65 | 0.66
Mecp2 | 0.544 | 0.793 | 0.793 | 0.799 | 0.795 | 0.795 | 0.801
Nr2c1 | 0.647 | 0.465 | 0.466 | 0.453 | 0.484 | 0.484 | 0.495
[NAME] | 0.434 | 0.464 | 0.464 | 0.466 | 0.459 | 0.459 | 0.463
Sox14 | 0.57 | 0.667 | 0.668 | 0.669 | 0.683 | 0.688 | 0.695
Sp1 | 0.465 | 0.62 | 0.62 | 0.627 | 0.634 | 0.634 | 0.641
Tbx3 | 0.402 | 0.472 | 0.481 | 0.483 | 0.467 | 0.476 | 0.478
Tcf3 | 0.549 | 0.51 | 0.51 | 0.51 | 0.467 | 0.467 | 0.467
[NAME] | 0.217 | 0.379 | 0.378 | 0.397 | 0.376 | 0.376 | 0.388
Ar | 0.269 | 0.414 | 0.409 | 0.412 | 0.41 | 0.415 | 0.418
[NAME] | 0.685 | 0.412 | 0.412 | 0.41 | 0.413 | 0.413 | 0.415
Foxo6 | 0.593 | 0.761 | 0.761 | 0.765 | 0.762 | 0.762 | 0.767
Klf12 | 0.407 | 0.366 | 0.367 | 0.379 | 0.397 | 0.385 | 0.388
Klf8 | 0.719 | 0.697 | 0.698 | 0.712 | 0.693 | 0.693 | 0.71
Klf9 | 0.673 | 0.518 | 0.52 | 0.512 | 0.615 | 0.616 | 0.629
Mlx | 0.82 | 0.843 | 0.843 | 0.846 | 0.79 | 0.79 | 0.791
Mzf1 | 0.449 | 0.54 | 0.54 | 0.533 | 0.514 | 0.522 | 0.517
Mzf1 | 0.32 | 0.534 | 0.535 | 0.54 | 0.527 | 0.527 | 0.532
[NAME] | 0.481 | 0.606 | 0.606 | 0.607 | 0.604 | 0.604 | 0.607
Nr2f6 | 0.774 | 0.693 | 0.693 | 0.695 | 0.631 | 0.619 | 0.633
Nr4a2 | 0.564 | 0.636 | 0.629 | 0.638 | 0.658 | 0.659 | 0.65
Pou2f1 | 0.597 | 0.621 | 0.622 | 0.626 | 0.576 | 0.576 | 0.576
Mypop | 0.554 | 0.672 | 0.672 | 0.675 | 0.712 | 0.712 | 0.727
Pou1f1 | 0.585 | 0.635 | 0.635 | 0.646 | 0.612 | 0.612 | 0.616
Prdm11 | 0.808 | 0.761 | 0.761 | 0.765 | 0.813 | 0.814 | 0.82
Rorb | 0.576 | 0.613 | 0.612 | 0.618 | 0.651 | 0.643 | 0.646
Sox10 | 0.511 | 0.55 | 0.551 | 0.554 | 0.559 | 0.559 | 0.563
Sox3 | 0.551 | 0.663 | 0.664 | 0.667 | 0.687 | 0.687 | 0.69
Sox6 | 0.531 | 0.555 | 0.555 | 0.56 | 0.54 | 0.54 | 0.551
Srebf1 | 0.54 | 0.515 | 0.516 | 0.518 | 0.523 | 0.534 | 0.54
Tbx2 | 0.677 | 0.773 | 0.773 | 0.775 | 0.758 | 0.758 | 0.762
Tbx20 | 0.606 | 0.504 | 0.535 | 0.542 | 0.41 | 0.432 | 0.44
Tbx4 | 0.687 | 0.529 | 0.53 | 0.532 | 0.564 | 0.564 | 0.572
Tbx5 | 0.692 | 0.524 | 0.525 | 0.522 | 0.541 | 0.541 | 0.559
Tcfec | 0.724 | 0.567 | 0.567 | 0.571 | 0.573 | 0.574 | 0.586
Xbp1 | 0.603 | 0.651 | 0.653 | 0.657 | 0.679 | 0.679 | 0.685
Zfp202 | 0.713 | 0.743 | 0.743 | 0.745 | 0.75 | 0.75 | 0.757
Zfp263 | 0.646 | 0.5 | 0.5 | 0.499 | 0.507 | 0.482 | 0.52
Zfp3 | 0.254 | 0.415 | 0.417 | 0.432 | 0.416 | 0.416 | 0.431
Zfx | 0.766 | 0.88 | 0.88 | 0.882 | 0.872 | 0.872 | 0.875
Zkscan1 | 0.306 | 0.511 | 0.511 | 0.512 | 0.514 | 0.514 | 0.516
Zscan10 | 0.328 | 0.557 | 0.557 | 0.557 | 0.56 | 0.56 | 0.559
Ahctf1 | 0.093 | 0.123 | 0.123 | 0.125 | 0.121 | 0.121 | 0.122
Atf3 | 0.445 | 0.554 | 0.554 | 0.559 | 0.559 | 0.559 | 0.561
Atf4 | 0.24 | 0.51 | 0.51 | 0.518 | 0.508 | 0.509 | 0.519
Dnajc21 | 0.203 | 0.29 | 0.291 | 0.291 | 0.293 | 0.29 | 0.293
[NAME] | 0.34 | 0.582 | 0.582 | 0.585 | 0.575 | 0.575 | 0.577
Egr3 | 0.56 | 0.688 | 0.688 | 0.692 | 0.709 | 0.709 | 0.673
Esrrb | 0.391 | 0.466 | 0.466 | 0.469 | 0.458 | 0.458 | 0.471
Esrrg | 0.455 | 0.563 | 0.563 | 0.567 | 0.488 | 0.488 | 0.471
Foxc2 | 0.55 | 0.66 | 0.66 | 0.662 | 0.653 | 0.653 | 0.656
Foxg1 | 0.545 | 0.7 | 0.701 | 0.703 | 0.692 | 0.692 | 0.696
Gata4 | 0.674 | 0.679 | 0.679 | 0.676 | 0.702 | 0.702 | 0.709
Mybl2 | 0.716 | 0.743 | 0.743 | 0.743 | 0.719 | 0.719 | 0.722
Nhlh2 | 0.267 | 0.614 | 0.614 | 0.617 | 0.612 | 0.612 | 0.615
Nkx2-9 | 0.638 | 0.76 | 0.761 | 0.76 | 0.796 | 0.797 | 0.789
Nr2e1 | 0.726 | 0.744 | 0.745 | 0.751 | 0.737 | 0.737 | 0.744
Nr2f1 | 0.554 | 0.713 | 0.713 | 0.717 | 0.764 | 0.764 | 0.728
Nr5a2 | 0.55 | 0.664 | 0.667 | 0.675 | 0.662 | 0.662 | 0.671
Pou1f1 | 0.566 | 0.646 | 0.646 | 0.647 | 0.61 | 0.61 | 0.612
Rarg | 0.796 | 0.749 | 0.742 | 0.745 | 0.732 | 0.732 | 0.744
Rfx7 | 0.504 | 0.556 | 0.546 | 0.548 | 0.523 | 0.523 | 0.517
Rora | 0.623 | 0.716 | 0.716 | 0.719 | 0.72 | 0.72 | 0.724
Sdccag8 | 0.744 | 0.825 | 0.825 | 0.826 | 0.829 | 0.829 | 0.834
Snai1 | 0.437 | 0.446 | 0.446 | 0.448 | 0.428 | 0.428 | 0.432
Sp140 | 0.447 | 0.682 | 0.682 | 0.681 | 0.665 | 0.665 | 0.667
Tbx1 | 0.14 | 0.239 | 0.241 | 0.25 | 0.242 | 0.242 | 0.254
Zbtb1 | 0.433 | 0.455 | 0.455 | 0.456 | 0.43 | 0.421 | 0.432
Zfp300 | 0.315 | 0.61 | 0.611 | 0.618 | 0.609 | 0.61 | 0.616
Zfp637 | 0.335 | 0.745 | 0.746 | 0.746 | 0.741 | 0.741 | 0.741
Zic5 | 0.374 | 0.558 | 0.558 | 0.565 | 0.557 | 0.557 | 0.563
Zkscan5 | 0.315 | 0.528 | 0.528 | 0.535 | 0.528 | 0.528 | 0.534
Zfp740 | 0.678 | 0.68 | 0.68 | 0.673 | 0.62 | 0.595 | 0.629
Zscan10 | 0.341 | 0.489 | 0.489 | 0.494 | 0.51 | 0.51 | 0.508
Zscan10 | 0.31 | 0.594 | 0.594 | 0.602 | 0.587 | 0.587 | 0.594
Average | 0.524 | 0.593 | 0.594 | 0.597 | 0.594 | 0.594 | 0.598
Spearman correlations
TF | HMIK | LINEAR | LF + LINEAR | LF + SD + LINEAR | QN + LINEAR | LF + QN + LINEAR | LF + SD + QN + LINEAR
Cebpb | 0.58 | 0.77 | 0.77 | 0.772 | 0.771 | 0.771 | 0.773
Egr2 | 0.476 | 0.713 | 0.713 | 0.714 | 0.713 | 0.713 | 0.711
Esr1 | 0.255 | 0.377 | 0.377 | 0.377 | 0.381 | 0.381 | 0.384
Foxj2 | 0.542 | 0.695 | 0.696 | 0.703 | 0.7 | 0.7 | 0.706
[NAME] | 0.487 | 0.687 | 0.687 | 0.716 | 0.684 | 0.684 | 0.722
Foxo3 | 0.475 | 0.715 | 0.715 | 0.725 | 0.733 | 0.732 | 0.74
Foxo4 | 0.629 | 0.8 | 0.8 | 0.801 | 0.82 | 0.814 | 0.823
Foxp1 | 0.485 | 0.706 | 0.706 | 0.715 | 0.711 | 0.711 | 0.724
Foxp2 | 0.386 | 0.608 | 0.608 | 0.611 | 0.61 | 0.61 | 0.612
Gmeb2 | 0.827 | 0.905 | 0.905 | 0.904 | 0.898 | 0.899 | 0.899
Irf2 | 0.583 | 0.726 | 0.726 | 0.725 | 0.735 | 0.735 | 0.739
[NAME] | 0.312 | 0.665 | 0.671 | 0.682 | 0.668 | 0.668 | 0.679
Mecp2 | 0.573 | 0.811 | 0.811 | 0.818 | 0.811 | 0.811 | 0.817
Nr2c1 | 0.275 | 0.429 | 0.43 | 0.428 | 0.433 | 0.433 | 0.433
[NAME] | 0.598 | 0.678 | 0.679 | 0.68 | 0.678 | 0.678 | 0.68
Sox14 | 0.544 | 0.72 | 0.722 | 0.724 | 0.722 | 0.722 | 0.726
Sp1 | 0.38 | 0.631 | 0.631 | 0.637 | 0.627 | 0.627 | 0.634
Tbx3 | 0.291 | 0.444 | 0.447 | 0.45 | 0.445 | 0.448 | 0.451
Tcf3 | 0.324 | 0.477 | 0.477 | 0.479 | 0.507 | 0.507 | 0.525
[NAME] | 0.172 | 0.389 | 0.389 | 0.416 | 0.388 | 0.388 | 0.418
Ar | 0.293 | 0.496 | 0.492 | 0.494 | 0.491 | 0.495 | 0.497
[NAME] | 0.443 | 0.714 | 0.714 | 0.712 | 0.716 | 0.716 | 0.713
Foxo6 | 0.52 | 0.772 | 0.771 | 0.777 | 0.775 | 0.775 | 0.782
Klf12 | 0.297 | 0.469 | 0.47 | 0.475 | 0.475 | 0.471 | 0.473
Klf8 | 0.507 | 0.702 | 0.702 | 0.707 | 0.701 | 0.701 | 0.707
Klf9 | 0.431 | 0.64 | 0.64 | 0.64 | 0.65 | 0.65 | 0.651
Mlx | 0.483 | 0.686 | 0.686 | 0.697 | 0.687 | 0.687 | 0.7
Mzf1 | 0.206 | 0.309 | 0.31 | 0.352 | 0.319 | 0.315 | 0.363
Mzf1 | 0.316 | 0.571 | 0.571 | 0.587 | 0.57 | 0.57 | 0.584
[NAME] | 0.472 | 0.673 | 0.674 | 0.674 | 0.673 | 0.673 | 0.674
Nr2f6 | 0.378 | 0.547 | 0.547 | 0.549 | 0.577 | 0.57 | 0.582
Nr4a2 | 0.412 | 0.6 | 0.596 | 0.6 | 0.604 | 0.604 | 0.6
Pou2f1 | 0.671 | 0.751 | 0.751 | 0.759 | 0.75 | 0.751 | 0.759
Mypop | 0.428 | 0.729 | 0.729 | 0.732 | 0.729 | 0.729 | 0.739
Pou1f1 | 0.67 | 0.759 | 0.759 | 0.776 | 0.758 | 0.758 | 0.774
Prdm11 | 0.665 | 0.838 | 0.838 | 0.837 | 0.836 | 0.836 | 0.835
Rorb | 0.367 | 0.565 | 0.564 | 0.572 | 0.584 | 0.577 | 0.584
Sox10 | 0.458 | 0.596 | 0.597 | 0.6 | 0.598 | 0.598 | 0.601
Sox3 | 0.585 | 0.759 | 0.76 | 0.763 | 0.761 | 0.761 | 0.764
Sox6 | 0.451 | 0.653 | 0.653 | 0.663 | 0.655 | 0.655 | 0.663
Srebf1 | 0.437 | 0.587 | 0.587 | 0.589 | 0.588 | 0.592 | 0.594
Tbx2 | 0.483 | 0.702 | 0.703 | 0.705 | 0.707 | 0.707 | 0.71
Tbx20 | 0.368 | 0.537 | 0.538 | 0.549 | 0.557 | 0.558 | 0.568
Tbx4 | 0.472 | 0.659 | 0.66 | 0.659 | 0.667 | 0.667 | 0.666
Tbx5 | 0.411 | 0.465 | 0.466 | 0.469 | 0.48 | 0.48 | 0.487
Tcfec | 0.435 | 0.637 | 0.637 | 0.638 | 0.637 | 0.637 | 0.639
Xbp1 | 0.495 | 0.701 | 0.701 | 0.702 | 0.702 | 0.702 | 0.703
Zfp202 | 0.501 | 0.643 | 0.643 | 0.643 | 0.645 | 0.645 | 0.646
Zfp263 | 0.363 | 0.582 | 0.582 | 0.584 | 0.584 | 0.583 | 0.587
Zfp3 | 0.324 | 0.581 | 0.586 | 0.599 | 0.581 | 0.582 | 0.599
Zfx | 0.521 | 0.778 | 0.778 | 0.781 | 0.778 | 0.778 | 0.78
Zkscan1 | 0.429 | 0.77 | 0.77 | 0.773 | 0.769 | 0.769 | 0.772
Zscan10 | 0.315 | 0.588 | 0.587 | 0.588 | 0.587 | 0.587 | 0.587
Ahctf1 | 0.434 | 0.58 | 0.58 | 0.591 | 0.579 | 0.579 | 0.59
Atf3 | 0.327 | 0.544 | 0.544 | 0.549 | 0.544 | 0.544 | 0.549
Atf4 | 0.292 | 0.601 | 0.601 | 0.61 | 0.598 | 0.6 | 0.609
Dnajc21 | 0.254 | 0.456 | 0.456 | 0.456 | 0.458 | 0.456 | 0.457
[NAME] | 0.448 | 0.725 | 0.725 | 0.729 | 0.723 | 0.723 | 0.725
Egr3 | 0.429 | 0.671 | 0.671 | 0.675 | 0.67 | 0.67 | 0.669
Esrrb | 0.3 | 0.521 | 0.521 | 0.523 | 0.519 | 0.518 | 0.521
Esrrg | 0.302 | 0.476 | 0.475 | 0.474 | 0.512 | 0.512 | 0.512
Foxc2 | 0.519 | 0.786 | 0.786 | 0.791 | 0.789 | 0.788 | 0.794
Foxg1 | 0.499 | 0.714 | 0.714 | 0.719 | 0.721 | 0.721 | 0.724
Gata4 | 0.594 | 0.719 | 0.719 | 0.718 | 0.72 | 0.72 | 0.721
Mybl2 | 0.56 | 0.726 | 0.726 | 0.729 | 0.739 | 0.739 | 0.742
Nhlh2 | 0.266 | 0.639 | 0.639 | 0.642 | 0.64 | 0.64 | 0.644
Nkx2-9 | 0.637 | 0.82 | 0.82 | 0.82 | 0.823 | 0.824 | 0.822
Nr2e1 | 0.636 | 0.735 | 0.736 | 0.74 | 0.737 | 0.737 | 0.741
Nr2f1 | 0.677 | 0.789 | 0.789 | 0.791 | 0.789 | 0.789 | 0.789
Nr5a2 | 0.329 | 0.63 | 0.633 | 0.654 | 0.639 | 0.639 | 0.662
Pou1f1 | 0.66 | 0.75 | 0.75 | 0.75 | 0.749 | 0.75 | 0.75
Rarg | 0.541 | 0.708 | 0.707 | 0.709 | 0.71 | 0.711 | 0.716
Rfx7 | 0.406 | 0.604 | 0.607 | 0.608 | 0.629 | 0.629 | 0.63
Rora | 0.387 | 0.657 | 0.656 | 0.662 | 0.659 | 0.659 | 0.665
Sdccag8 | 0.681 | 0.802 | 0.802 | 0.802 | 0.806 | 0.806 | 0.807
Snai1 | 0.509 | 0.615 | 0.616 | 0.616 | 0.615 | 0.615 | 0.616
Sp140 | 0.486 | 0.71 | 0.71 | 0.709 | 0.717 | 0.717 | 0.714
Tbx1 | 0.39 | 0.643 | 0.654 | 0.673 | 0.652 | 0.652 | 0.682
Zbtb1 | 0.416 | 0.66 | 0.66 | 0.661 | 0.66 | 0.658 | 0.66
Zfp300 | 0.353 | 0.653 | 0.655 | 0.662 | 0.652 | 0.652 | 0.659
Zfp637 | 0.338 | 0.766 | 0.766 | 0.766 | 0.761 | 0.761 | 0.76
Zic5 | 0.257 | 0.458 | 0.459 | 0.469 | 0.467 | 0.467 | 0.479
Zkscan5 | 0.334 | 0.574 | 0.574 | 0.582 | 0.572 | 0.572 | 0.58
Zfp740 | 0.352 | 0.541 | 0.541 | 0.541 | 0.542 | 0.543 | 0.542
Zscan10 | 0.36 | 0.561 | 0.561 | 0.568 | 0.56 | 0.56 | 0.567
Zscan10 | 0.327 | 0.635 | 0.634 | 0.645 | 0.629 | 0.629 | 0.641
Average | 0.443 | 0.645 | 0.645 | 0.651 | 0.649 | 0.649 | 0.655