Spreadsheet: 1cd0f700-0191-4dcc-93e7-4a989a178b9f
Sheet: Sheet1

Table S4. Oligonucleotides | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7
Species | Gene | Assay | Forward | Sequence (5' to 3') | Reverse | Sequence (5' to 3') | COBRA restriction enzyme
Human | DIAPH1 | ChIP | DIAPH1ipF3 | GGCCTGCGCTGCTCCAAC | DIAPH1ipR3 | TACCTGCCCAGCGGACCTAA
Human | HARS | ChIP | HARSipF | CCACCTCAGCCTTCGTGACTA | HARSipR | GCACTGCAAAGGCGGAAC
Human | HDAC3 | ChIP | HDAC3ipF | GAGGTGCGGGGCCTGCTC | HDAC3ipR | CCACGTCGGGGTCGTAGA
Human | [NAME] | ChIP | PCDHA1ipF | GAGGAGAGCATAAGAAAGGTGTAG | PCDHA1ipR | [NAME]
Human | PCDHA13 | ChIP | PCDHA13ipF | AGCTCTGAGGTTTTTGGAGTGTA | PCDHA13ipR | ATCAGAAGCCAGAGCAGTAGTTG
Human | PCDHB12 | ChIP | PCDHB12rnaF | GGGAGAACCTAGAAGCCATTCAAC | PCDHB12rnaR | CGCAGTTGTGGGAAACGT
Human | PCDHB14 | ChIP | PCDHB14rnaF | GGACATTTTGGAGAGAACTG | PCDHB14rnaR | GTAAGGCCTTCTAAAAGATAATTG
Human | PCDHB15 | ChIP | PCDHB15rnaF | GACCGTCTGTTAATTTTGTCTTCC | PCDHB15rnaR | CAGACAAAGGAAATGAGTAACAT
Human | PCDHB3 | ChIP | PCDHB3rnaF3 | CGAGGCAAATCCCAGTTTC | PCDHB3rnaR3 | CTCTCCAATGGACAAAGCAGTAAA
Human | PCDHB6 | ChIP | PCDHB6rnaF2 | AGCCATTCATACTTATGCATATTT | PCDHB6rnaR2 | GCTCACAAACTAATGTGTTGACA
Human | PCDHGA12 | ChIP | PCDHGA12ipF | CAGTGGTTAAGGGCAGAATTGAA | PCDHGA12ipR | AGCAGGACAAGCCCTTTGTA
Human | PCDHGA2 | ChIP | PCDHGA2ipF | AAAGATTGGAATCCGCACTG | PCDHGA2ipR | CTTTCTGCAGTGTGGCAACTT
Human | PCDHGA3 | ChIP | PCDHGA3ipF | AAATAAGATTGGAGTCCGTCGTAG | PCDHGA3ipR | CCTCTGCCATTTCGGAAACTC
Human | PCDHGA6 | ChIP | PCDHGA6ipF | GCATCCGGTCTCTGCTTGT | PCDHGA6ipR | GCGCCATTACTGGCTTATTAGG
Human | PCDHGB1 | ChIP | PCDHGB1ipF | TGAAAAACATCCCAGAGGAAAGA | PCDHGB1ipR | GCAGGAAGGGAAACAGTACCTGA
Human | PCDHGC3 | ChIP | PCDHGC3ipF | CCGCTGAGAGGAACTGCT | PCDHGC3ipR | ACTACCCTCCCGGTGCTTAC
Human | RELL2 | ChIP | RELL2ipF | TCCCGGTATCTGGGGCTTTG | RELL2ipR | GCTCGGCTTCCCGAGGAT
Human | TAF7 | ChIP | TAF7ipF | GCGTCGCGACGTAGCACT | TAF7ipR | GCAGCTCGCATCACCAGAC
Human | WDR55 | ChIP | WDR55ipF | GATCTCCCAGATGCGGTCTC | WDR55ipR | CACACTGCGGGAGGAGTAG
Human | ZMAT2 | ChIP | ZMAT2ipF | GCTCGTTTAGAACACAAGACTCC | [NAME] | CCTCCTCCTCAGACACAACAC
Human | CD14 | COBRA | CD14cobF | TGGATGGGGTTTTTTAGATTTTT | CD14cobR2 | TCCACCTCTACTACAAACACACACTA | BstUI
Human | DIAPH1 | COBRA | DIAPH1cobF | GATGTGAGAGGGTTTAGGTTGTTAG | DIAPH1cobR | CAACCCCTACCAATAAAAAAAA | BstUI
Human | DND1 | COBRA | DND1cobF | GAGGGGGTTAATTTTAAGGTGTATT | DND1cobR | ACTACCCACCCAACCTATAAAAAA | BstUI
Human | H19 | COBRA | H19 NEW L | TAGGATTTTTGTGTTGTTGGAGATA | H19 NEW R | ACACCTATAAACAAATTCACCTCTC | TaqI
Human | HARS2 | COBRA | HARS_LcobF | GTTGGTTTTTTGTTGTTTGAGGT | HARS_LcobR | CTAAAATAAAATCCTCCCAAATTCC | TaqI
Human | HDAC3 | COBRA | HDAC3cobF | AGGAGTTATGTTGTTAGTTTTTTGTTTAAT | HDAC3cobR | CTCTCACCCCTAAAATTACAAC | TaqI
Human | NDUFA2 | COBRA | NDU_IKcobF | GGGTTTTTTTTAATTTTAGGGAGG | NDU_IKcobR | CCTACCTCATACAACCTATAAACTAAACTT | BstUI
Human | PCDH1 | COBRA | PCDH1cobF1 | GTAGAGGGTAGGTGATTAGGGGAT | PCDH1cobR1 | AAACAAAAAAAATATCTCCCACAAC | TaqI
Human | [NAME] | COBRA | PCDHA1cobF | TTGGTGTTTATATTGTTGTTGTATA | PCDHA1cobR | [NAME] | TaqI
Human | PCDHA13 | COBRA | PCDHA13cobF | TTTTTTTGGTAAGGAGGTTTAAGAT | PCDHA13cobR | CTACAAATTTACCTCCAAAAAATCC | TaqI
Human | PCDHAC1 | COBRA | PCDHAC1cobF | GGGGGTTTTTGTTTTTTTAAGTTTA | PCDHAC1cobR | TAAACCCAACTAAACTCTTCCTACC | TaqI
Human | PCDHAC2 | COBRA | PCDHAC2cobF | ATTTTGTGTTAGAGGAGTAGGTATT | PCDHAC2cobR | ACACTTCCAAACTAAACAAACAAC | AciI
Human | [NAME] | COBRA | PCDHB1cobF | GTTAAGGATTTAGGATTGGAGGTAG | PCDHB1cobR | CTTCAAAATACAAAACACAAAAATC | AciI
Human | PCDHB12 | COBRA | PCDHB12cobF1 | TGTTTATTAAATTGTGAAAATTTGT | PCDHB12cobR1 | AAACTTACCTTATCTACAAAATACCTA | AciI
Human | PCDHB14 | COBRA | PCDHB14cobF1 | AATAGAAATTGGTTTTTTTGTGGTT | PCDHB14cobR1 | ATAATCATTTATATCTTTAACACACAACTC | TaqI
Human | PCDHB15 | COBRA | PCDHB15cobF | TTAGTGGTGTTGGTTAAGGATAATG | PCDHB15cobR | TCCACCAAATACCCTAAAAAAAA | RsaI
Human | PCDHB3 | COBRA | PCDHB3cobF | ATAAAGGTAAGTTTTGTTTTTTTT | PCDHB3cobR | AAAACAAATCACCTATCTAATAAC | BstUI
Human | PCDHB6 | COBRA | PCDHB6cobF | GAATTTAGGAATTGGTTTAAAAATA | PCDHB6cobR | TTTCTTATTCTATACTTTAATTTACATCAT | AciI
Human | PCDHB8 | COBRA | PCDHB8cobF | TTATTTGGTGATTAAGGTGGTGG | PCDHB8cobR | CCTAACCCTAAACTAAAACAACCTC | AciI
Human | PCDHGA12 | COBRA | PCDHGA12cobF | AATGTTTAGATTTAATGTATATTTGATGGT | PCDHGA12cobR | CTCCAAAAACCTAAAACTAAAACCC | AciI
Human | PCDHGA2 | COBRA | PCDHGA2cobF2 | ATTTTGAGGAATAAAGATTGGAATT | PCDHGA2cobR2 | AAAAACTAAAACCTACCTCTAAAAAC | AciI
Human | PCDHGA3 | COBRA | PCDHGA3cobF2 | TTGAGGAGTTAGATAAAGGTTTTTT | PCDHGA3cobR2 | AAATATTAATTTTTACCAAACACAAC | AciI
Human | PCDHGA6 | COBRA | PCDHGA6cobF1 | GAGGAGTTGGAGAAAGGTTTTTT | PCDHGA6cobR1 | CAAAAATATTAAAACTCACCAAACAC | AciI
Human | PCDHGA7 | COBRA | PCDHGA7cobF1 | GTGTATTAATGTGGTGTAGTAATTTAGTAA | PCDHGA7cobR1 | AATAAAAAACAAAAAAAATCCTCTA | AciI
Human | PCDHGB1 | COBRA | PCDHGB1cobF2 | AGTTTAGGGTGTTGTTATTTTTTTT | PCDHGB1cobR2 | CTAAACCCCAAATCCTTAACAAATT | AciI
Human | PCDHGB3 | COBRA | PCDHGB3cobF1 | AAGATAAAGTAAATAGTTGGTTTTGTT | PCDHGB3cobR1 | AATTCCTAATAAATAAATCCCCCAC | AciI
Human | PCDHGB4 | COBRA | PCDHGB4cobF2 | TTGAATTGGAATTGTAATTAAAGTT | PCDHGB4cobR2 | AAAAAAACACTAACAACCTCTCAAC | AciI
Human | PCDHGC3 | COBRA | PCDHGC3cobF | GTTTTTGTTTGGTGTTTTGAATAAG | PCDHGC3cobR | AAAAAAACAATATCCCACACAACTC | TaqI
Human | PCDHGC4 | COBRA | PCDHGC4cobF | TTTTGTTTAGTTTATTGGTTGAGTT | PCDHGC4cobR | AATTTCTATCCAACTTCTCACCTTAC | AciI
Human | PCDHGC5 | COBRA | PCDHGC5cobF | GATTGAATTTGTATTTATTTTTTTT | PCDHGC5cobR | AATAAATCTATAACTACCTCCTCCC | TaqI
Human | RASSF1 | COBRA | RASSF1Acobra_F | GTGGGTAGGTTAAGTGTGTTGT | RASSF1Acobra_R | CAACTCAATAAACTCAAACTCCC | BstUI
Human | SLC25A2 | COBRA | SLC25A2cobF | TTTTTGATTTGTATAAGGGTTTTAT | SLC25A2cobR2 | AAAACCAATACAACAAATACAA | RsaI
Human | TAF7 | COBRA | TAF7cobF2 | TAAATAGTTTGAAATTAATAGTT | TAF7cobR2 | [NAME] | TaqI
Human | TMCO6 | COBRA | PRO1580cobF | AAGATAGGAAATTAATTAGAGGTAGAG | PRO1580cobR | ACTCCACATAATAAAACAAAAAAAA | BstUI
Human | WDR55 | COBRA | WDR55cobF | TGAGTTGTTTGTTGTTTTAGATTTT | WDR55cobR | acTACTTCCTTATCCTACTATAAC | BstUI
Human | ZMAT2 | COBRA | ZMAT2cobF | GTTGGGGTTTTGAGGTTATTTTAGT | ZMAT2cobR | AATATAATTAACACCCACCATCTTTCTT | TaqI
Human | DIAPH1 | RT-PCR | DIAPH1rnaF | ACAGCACAGTCATTGCAAGATG | DIAPH1rnaR | [NAME]
Human | DND1 | RT-PCR | DND1rnaF | GATCGCTCTGCTCAAATTCAG | DND1rnaR | CTCTCCACAGAGGTGTGACTG
Human | HARS | RT-PCR | HARSx12rnaF | TCATCAAGCTCCGTTCAGTGAC | HARSx13rnaR | CTGGCCTGTTCTCCTTTTGATTTC
Human | HARS2 | RT-PCR | HARSLx12rnaF | AGAACTGAAAGAAGGGGTCATCAA | HARSLx13rnaR | CAGCCACAAAATTTTCCCGTTTA
Human | HDAC3 | RT-PCR | HDAC3x14rnaF | GAGAGGGGTCCTGAGGAGAA | HDAC3x15rnaR | AGCCACTCTTAAATCTCCACATCG
Human | [NAME] | RT-PCR | PCDHA1rnaF | CTCCAAGTCTTAACACGTCAGA | PCDHArnaR | CTGTGCATGCCTGCTCTCAG
Human | PCDHA13 | RT-PCR | PCDHA13rnaF | GAGGAGGACTCAGAATGCTTG | PCDHArnaR | CTGTGCATGCCTGCTCTCAG
Human | PCDHB12 | RT-PCR | PCDHB12rnaF | GGGAGAACCTAGAAGCCATTCAAC | PCDHB12rnaR | CGCAGTTGTGGGAAACGT
Human | PCDHB14 | RT-PCR | PCDHB14rnaF | GGACATTTTGGAGAGAACTG | PCDHB14rnaR | GTAAGGCCTTCTAAAAGATAATTG
Human | PCDHB15 | RT-PCR | PCDHB15rnaF | GACCGTCTGTTAATTTTGTCTTCC | PCDHB15rnaR | CAGACAAAGGAAATGAGTAACAT
Human | PCDHB3 | RT-PCR | PCDHB3rnaF3 | CGAGGCAAATCCCAGTTTC | PCDHB3rnaR3 | CTCTCCAATGGACAAAGCAGTAAA
Human | PCDHB6 | RT-PCR | PCDHB6rnaF2 | AGCCATTCATACTTATGCATATTT | PCDHB6rnaR2 | GCTCACAAACTAATGTGTTGACA
Human | PCDHB8 | RT-PCR | PCDHB8rnaF4 | GGAGCCTGTCTCAGAACTATCAGT | PCDHB8rnaR4 | ACTGGTTTCAGGAACTGGAACTCA
Human | PCDHGA12 | RT-PCR | PCDHGA12rnaF | TGCTGTCAGGTGATTCGGTA | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGA2 | RT-PCR | PCDHGA2rnaF | TATCAGCGCCTCAATCTCTACTC | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGA3 | RT-PCR | PCDHGA3rnaF3 | GAAAGGAGATTCCAACCTACTTCA | PCDHGA3rnaR3 | AGAGAAACGCCAGTCCGTGTT
Human | PCDHGA4 | RT-PCR | PCDHGA4rnaF | CCACACTGAAATATAGACAAAGAG | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGA5 | RT-PCR | PCDHGA5rnaF | GCGAGCCTCTTCTGATGTCTGATA | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGA6 | RT-PCR | PCDHGA6rnaF | AGCGAGCCTCTTCTGATAACTCA | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGA7 | RT-PCR | PCDHGA7rnaF | TGCTAACATCCGTAGATTTTCAGG | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGA9 | RT-PCR | PCDHGA9rnaF | [NAME] | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGB1 | RT-PCR | PCDHGB1rnaF | AGATCACAAAATCGCTTATGAC | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGB2 | RT-PCR | PCDHGB2rnaF | ACAATGCCTCTTGGGAACAAA | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGB3 | RT-PCR | PCDHGB3rnaF | GCTGAAAATGCTGCACCACAA | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGB4 | RT-PCR | PCDHGB4rnaF2 | TCCAGTGAATTGACTTCCCATCAG | PCDHGB4rnaR2 | GAGAGAAACGCCAGTCCGTGT
Human | PCDHGC3 | RT-PCR | PCDHGC3rnaF | GATCCGGTGTTCTATAGGCAGGTG | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGC4 | RT-PCR | PCDHGC4rnaF | TATGGCAGGGGAGCCTGTT | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PCDHGC5 | RT-PCR | PCDHGC5rnaF | CATCCGGTCCCGCTCTAA | PCDHGA3rnaR | GAGAAACGCCAGTCCGTGTTG
Human | PGAMMA | RT-PCR | PGAMMAx3rnaF | GGCACCTGGCCCAACAAC | PGAMMAx4rnaR | AGGGTGGAGCTCCCATCA
Human | SLC25A2 | RT-PCR | SLC25a2rnaF2 | AATGGGGCACTGTTTGTGG | SLC25a2rnaR2 | GGTTCACCAAGACACTTCAGTATG
Human | WDR55 | RT-PCR | WDR55x6rnaF | CCCTGAGAGCTGAATCTATCGA | WDR55x7rnaR | CGGTTCGGTAGGATGTTCAC
Human | ZMAT2 | RT-PCR | ZMAT2x5rnaF | GGAAGAGAAGCAGAAGGATTATGA | ZMAT2x6rnaR | CTTGTACGCTTTGGCCTTTT
Human | Non-target | siRNA |  | UGGUUUACAUGUCGACUAA
Human | PGAMMA | siRNA |  | GCAAGAAGGAGAAGAAGUAUU
Human | CTNNB1 | siRNA |  | GAUCCUAGCUAUCGUUCUUUU, UAAUGAGGACCUAUACUUAUU, GCGUUUGGCUGAACCAUCAUU, GGUACGAGCUGCUAUGUUCUU
[NAME] | Cdh1 | RT-PCR | MmCdh1rnaF | CAGCCTTCTTTTCGGAAGACT | MmCdh1rnaR_ | GGTAGACAGCTCCCTATGACTG
[NAME] | Cdh5 | RT-PCR | MmCdh5rnaF | TCCTCTGCATCCTCACTATCACA | MmCdh5rnaR_ | [NAME]
[NAME] | Pcdhb15 | RT-PCR | MPcdhb15rnaF | TCTGACTGGAGGATCAGGGATAAC | MPcdhb15rnaR | CTCCCTGTGCTTTCGGTTAG
[NAME] | Pcdhb6 | RT-PCR | [NAME] | CGTGGGGGTGAGGCTTTG | MPcdhb6rnaR | CCATACCGCTGACATCCACTAAGT
[NAME] | Pcdhb8 | RT-PCR | MPcdhb8rnaF | GGGGTGAAGTTGTGCAAGAAG | MPcdhb8rnaR | ATCCACCAAGTGGCTAGGAAAGT
[NAME] | [NAME] | RT-PCR | Mmpgammax3F | TGCTGCAAGCCATGATCT | Mmpgammax4R | GTAAACTGGGGTCCGTATCG
[NAME] | Pcdhga12 | RT-PCR | MPGA12rnaF | TACCATCGGGTGATTCGGTT | M/RPGAXrnaR | GAGAAACGCCAGTCAGTGTTG
[NAME] | Pcdhga2 | RT-PCR | MPGA2rnaF | CCTCTCAGCACCTCAGTCTTTA | M/RPGAXrnaR | GAGAAACGCCAGTCAGTGTTG
[NAME] | Pcdhga3 | RT-PCR | Mmpcdhga3F2 | TTGAGAGGGTAAGGCTTTAATCC | Mmpcdhga3R2 | CGTTGGAAAACTAGGAGCATTATC
[NAME] | Pcdhga6 | RT-PCR | MPGA6rnaF2 | GAACGACAATGCTCCAGTAT | MPGA6rnaR2 | AGGATTCAAGCAGAAAATCT
[NAME] | Pcdhgc3 | RT-PCR | MPcdhgc3rnaF | TAGACAGGTGTTGGGTGCAG | MPcdhgc3rnaR | TGGCTTGCAGCATCTCTGTA
[NAME] | Tbp | RT-PCR | MTBPRQF | GGCCTCTCAGAAGCATCACTA | MTBPRQR | GCCAAGCCCTGAGCATAA
Rat | Cdh1 | RT-PCR | RCdh1x15F | GTCCAGCCAATCCTGATGAA | RCdh1x15R | CATAGTCAAACACCAACAGAGAG
Rat | [NAME] | RT-PCR | Mmpgammax3F | TGCTGCAAGCCATGATCT | RATGAMMAX4R | GTAAACTGGGGTCCATATCG
Rat | Pcdhga12 | RT-PCR | RPGA12rnaF | TGCCATCGAGTGATTTGGTA | M/RPGAXrnaR | GAGAAACGCCAGTCAGTGTTG
Rat | Pcdhga2 | RT-PCR | RPGA2rnaF | TCTTTCAGCACCGCAGTCTTTA | M/RPGAXrnaR | GAGAAACGCCAGTCAGTGTTG
Rat | Pcdhga6 | RT-PCR | RPGA6rnaF | GAACGACAATGCTCCGGTAT | RPGA6rnaR | AGGATCCAAGCGGAAAATCT
Rat | Pcdhgc3 | RT-PCR | RPcdhgc3rnaF | TTTGAGTGAGATGGTCGCAG | RPcdhgc3rnaR | AGTGAATGATGGTGGAAGCC
Rat | Tbp | RT-PCR | RATTBPRQF2 | CCAAGCGGTTTGCTGCAGTCATCA | RATTBPRQR2 | ACTTAGCTGGGAAGCCCAGCTTCT
Rat | Wt1 | RT-PCR | MWTRQF2 | AATGCGCCCTACCTGCCCA | MWTRQR2 | CCGTCGAAAGTGACCGTGCTGTAT