Spreadsheet: 30e17b40-7c6c-4c10-b706-6a94ee7abc39
Sheet: Sheet1

Table S6: Annotation information for markers used in this study | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7
Marker name | Locus | Chr | FlyBase R5 position | Method | Type | Kind | Notes
Dro63D_1959 | Dro63D | 3L | 3314524 | pyrosequencing | exon | silent
Dro63D_2910 | Dro63D | 3L | 3315475 | pyrosequencing | intergenic | noncoding | between [NAME] and dro4
Dro63D_3962 | Dro63D | 3L | 3316527 | pyrosequencing | intergenic | noncoding | between dro4 and dro5
DroL_1588 | [NAME] | 3L | 3335200 | SNPlex | downstream | noncoding | downstream of Drs-l
DroL_1142 | [NAME] | 3L | 3335646 | SNPlex | exon | replacement (A/V)
DroL_1058 | [NAME] | 3L | 3335730 | SNPlex | exon | replacement (C/F)
DroL_393 | [NAME] | 3L | 3336395 | pyrosequencing | upstream | noncoding | upstream of dro6
Drs_201 | Drs | 3L | 3368770 | pyrosequencing | upstream | noncoding | upstream of Drs
Drs_666 | Drs | 3L | 3369235 | pyrosequencing | upstream | noncoding | upstream of Drs
PGRPLD_353 | PGRPLD | 3L | 5772498 | SNPlex | upstream | noncoding
PGRPLD_1032 | PGRPLD | 3L | 5773177 | SNPlex | 5' UTR | noncoding | PGRP-RB, -RC
PGRPLD_2839 | PGRPLD | 3L | 5774984 | SNPlex | intron | noncoding | PGRP-RB, -RC, -RA
PGRPLD_3124 | PGRPLD | 3L | 5775269 | snpstream | exon | silent | PGRP-RB, -RC, -RA
PGRPLD_4174 | PGRPLD | 3L | 5776319 | SNPlex | exon | silent | PGRP-RB, -RC, -RA
PGRPLD_4832 | PGRPLD | 3L | 5776977 | SNPlex | 3' UTR | noncoding | PGRP-RB, -RC, -RA
PGRPSD_214 | PGRPSD | 3L | 7643519 | SNPlex | upstream | noncoding
PGRPSD_494 | PGRPSD | 3L | 7643799 | pyrosequencing | upstream | noncoding
PGRPSD_621 | PGRPSD | 3L | 7643926 | pyrosequencing | upstream | noncoding
PGRPSD_1121 | PGRPSD | 3L | 7644426 | SNPlex | exon | replacement (E/V)
PGRPSD_1547 | PGRPSD | 3L | 7644852 | SNPlex | downstream | noncoding
GNBP3_160 | GNBP3 | 3L | 8947281 | pyrosequencing | upstream | noncoding
GNBP3_452 | GNBP3 | 3L | 8947573 | SNPlex | upstream | noncoding
GNBP3_679 | GNBP3 | 3L | 8947800 | fRFLP/MseI | upstream | noncoding
GNBP3_701 | GNBP3 | 3L | 8947822 | pyrosequencing | upstream | noncoding
GNBP3_1642 | GNBP3 | 3L | 8948763 | SNPlex | exon | replacement (P/L)
PGRPLA_410 | PGRPLA | 3L | 9326842 | pyrosequencing | upstream | noncoding
PGRPLA_1071 | PGRPLA | 3L | 9327503 | SNPlex | 5' UTR | noncoding | PGRP-LA-RD, -RE
PGRPLA_1591 | PGRPLA | 3L | 9328023 | SNPlex | exon | silent | PGRP-LA-RD, -RE
PGRPLA_3020 | PGRPLA | 3L | 9329452 | SNPlex | exon | silent | PGRP-LA-RC, -RF; [NAME], -RE; 5' UTR -RC
PGRPLA_3481 | PGRPLA | 3L | 9329913 | SNPlex | exon | silent | PGRP-LA-RC, -RF, -RD, -RE; 5' UTR -RC
PGRPLA_3707 | PGRPLA | 3L | 9330139 | pyrosequencing | exon | replacement (S/A) | PGRP-LA-RC, -RF, -RD, -RE; 5' UTR -RC, 3' UTR -RD
PGRPLA_4256 | PGRPLA | 3L | 9330688 | SNPlex | exon | silent | PGRP-LA-RC, -RF, -RD, -RE; 3' UTR -RD
PGRPLC_131 | PGRPLC | 3L | 9332685 | pyrosequencing | upstream | noncoding
PGRPLC_206 | PGRPLC | 3L | 9332760 | fRFLP/BsrGI | upstream | noncoding
PGRPLC_345 | PGRPLC | 3L | 9332899 | pyrosequencing | upstream | noncoding
PGRPLC_465 | PGRPLC | 3L | 9333019 | SNPlex | upstream | noncoding
PGRPLC_597 | PGRPLC | 3L | 9333151 | pyrosequencing | upstream | noncoding
PGRPLC_884 | PGRPLC | 3L | 9333438 | pyrosequencing | upstream | noncoding
PGRPLC_3265 | PGRPLC | 3L | 9335819 | SNPlex | exon | replacement (T/K) | all
PGRPLC_5624 | PGRPLC | 3L | 9338178 | SNPlex | exon | replacement (R/S) | -RB; intron: -RA, -RC
PGRPLC_6230 | PGRPLC | 3L | 9338784 | SNPlex | exon | replacement (R/K) | -RA; intron: -RB, -RC
PGRPLC_6635 | PGRPLC | 3L | 9339189 | SNPlex | exon | replacement (K/Q) | -RA; intron: -RB, -RC
PGRPLF_588 | PGRPLF | 3L | 9342299 | SNPlex | intergenic | noncoding | between PGRP-LC and PGRP-LF
PGRPLF_1088 | PGRPLF | 3L | 9342799 | SNPlex | exon | replacement (V/A)
PGRPLF_2262 | PGRPLF | 3L | 9343973 | SNPlex | intron | noncoding
PGRPLF_2711 | PGRPLF | 3L | 9344422 | SNPlex | 3' UTR | noncoding
Tsf2_3403 | Tsf2 | 3L | 12524418 | snpstream | exon | silent
Tsf2_2883 | Tsf2 | 3L | 12524938 | snpstream | intron | noncoding
Tsf2_2430 | Tsf2 | 3L | 12525391 | snpstream | exon | replacement (A/G)
Tsf2_1427 | Tsf2 | 3L | 12526394 | pyrosequencing | exon | silent
PGRPSB2_288 | PGRPSB2 | 3L | 16718936 | pyrosequencing | upstream | noncoding
PGRPSB2_387 | PGRPSB2 | 3L | 16719035 | pyrosequencing | upstream | noncoding
PGRPSB2_529 | PGRPSB2 | 3L | 16719177 | pyrosequencing | upstream | noncoding
PGRPSB2_1062 | PGRPSB2 | 3L | 16719710 | SNPlex | exon | silent
PGRPSB2_1326 | PGRPSB2 | 3L | 16719974 | SNPlex | exon | silent
PGRPSB2_1429 | PGRPSB2 | 3L | 16720077 | pyrosequencing | exon | silent
PGRPSB1_1404 | PGRPSB1 | 3L | 16720679 | pyrosequencing | exon | replacement (S/A)
PGRPSB1_1117 | PGRPSB1 | 3L | 16720966 | pyrosequencing | intron | noncoding
PGRPSB1_958 | PGRPSB1 | 3L | 16721125 | pyrosequencing | upstream | noncoding
PGRPSB1_573 | PGRPSB1 | 3L | 16721510 | pyrosequencing | upstream | noncoding
PGRPSB1_154 | PGRPSB1 | 3L | 16721929 | pyrosequencing | upstream | noncoding
GNBP75D_1041 | GNBP75D | 3L | 18666613 | SNPlex | 3' UTR | noncoding | GNBP2 (all)
GNBP75D_1209 | GNBP75D | 3L | 18666781 | SNPlex | exon | silent | GNBP2 (-RA, -RB, -RD); 3' UTR -RC
GNBP75D_2330 | GNBP75D | 3L | 18667902 | SNPlex | exon | silent | GNBP2 (all)
GNBP75D_2620 | GNBP75D | 3L | 18668192 | fRFLP/TaqI | intron | noncoding | GNBP2 (all)
GNBP75D_3350 | GNBP75D | 3L | 18668922 | SNPlex | 5' UTR | noncoding | GNBP1
GNBP75D_3386 | GNBP75D | 3L | 18668958 | fRFLP/HpyCH4IV | 5' UTR | noncoding | GNBP1
GNBP75D_3486 | GNBP75D | 3L | 18669058 | pyrosequencing | 5' UTR | noncoding | GNBP1
GNBP75D_3696 | GNBP75D | 3L | 18669268 | SNPlex | intron | noncoding | GNBP1
GNBP75D_3768 | GNBP75D | 3L | 18669340 | pyrosequencing | intron | noncoding | GNBP1
GNBP75D_4856 | GNBP75D | 3L | 18670428 | SNPlex | exon | replacement (H/Q) | GNBP1
Toll9_5137 | [NAME] | 3L | 20355687 | SNPlex | exon | replacement (T/P)
Toll9_4634 | [NAME] | 3L | 20356190 | SNPlex | exon | replacement (W/L)
Toll9_3579 | [NAME] | 3L | 20357245 | SNPlex | intron | noncoding
Toll9_3231 | [NAME] | 3L | 20357593 | SNPlex | exon | replacement (L/Q)
Toll9_3034 | [NAME] | 3L | 20357790 | SNPlex | exon | replacement (A/S)
Toll9_2920 | [NAME] | 3L | 20357904 | SNPlex | exon | replacement (W/R)
Toll9_2539 | [NAME] | 3L | 20358285 | SNPlex | intron | noncoding
Toll9_1979 | [NAME] | 3L | 20358845 | SNPlex | exon | silent
Toll9_607 | [NAME] | 3L | 20360217 | SNPlex | upstream | noncoding
tub_2715 | tub | 3R | 214682 | SNPlex | exon | replacement (R/Q)
tub_2866 | tub | 3R | 214833 | pyrosequencing | exon | silent
ECSIT_1367 | ECSIT | 3R | 1682674 | pyrosequencing | exon | silent
ECSIT_1441 | ECSIT | 3R | 1682748 | snpstream | exon | replacement (G/A)
[NAME] | ECSIT | 3R | 1683445 | SNPlex | exon | silent
ECSIT_2471 | ECSIT | 3R | 1683778 | SNPlex | downstream | noncoding
Rel_4867 | Rel | 3R | 4869832 | SNPlex | downstream | noncoding
Rel_2881 | Rel | 3R | 4871818 | SNPlex | exon | silent | Rel (all)
Rel_2420 | Rel | 3R | 4872279 | SNPlex | exon | silent | Rel (all)
Rel_1344 | Rel | 3R | 4873355 | SNPlex | 5' UTR | noncoding | Rel (-RA, -RB)
Rel_793 | Rel | 3R | 4873906 | pyrosequencing | upstream | noncoding
Rel_111 | Rel | 3R | 4874588 | SNPlex | upstream | noncoding
PGRPLB_5939 | PGRPLB | 3R | 7278803 | SNPlex | exon | replacement (V/L) | all
PGRPLB_1408 | PGRPLB | 3R | 7283334 | fRFLP/MspI | exon | replacement (L/P) | -RC only
PGRPLB_1246 | PGRPLB | 3R | 7283496 | pyrosequencing | 5' UTR | noncoding | -RC only
PGRPLB_1131 | PGRPLB | 3R | 7283611 | pyrosequencing | 5' UTR | noncoding | -RC only
PGRPLB_381 | PGRPLB | 3R | 7284361 | SNPlex | upstream | noncoding
PGRPLB_21 | PGRPLB | 3R | 7284721 | pyrosequencing | upstream | noncoding
ird5_2981 | ird5 | 3R | 11873163 | SNPlex | exon | replacement (K/E)
ird5_1624 | ird5 | 3R | 11874520 | pyrosequencing | exon | silent
ird5_1273 | ird5 | 3R | 11874871 | pyrosequencing | intron | noncoding
ird5_1161 | ird5 | 3R | 11874983 | pyrosequencing | exon | silent
ird5_443 | ird5 | 3R | 11875701 | pyrosequencing | upstream | noncoding
AttD_180 | AttD | 3R | 13450170 | SNPlex | upstream | noncoding
AttD_1581 | AttD | 3R | 13451571 | SNPlex | exon | replacement (N/S)
BG4_762 | BG4 | 3R | 17859966 | pyrosequencing | upstream | noncoding
BG4_1293 | BG4 | 3R | 17860497 | pyrosequencing | upstream | noncoding
BG4_1419 | BG4 | 3R | 17860623 | fRFLP/Msp I | upstream | noncoding
[NAME] | BG4 | 3R | 17860687 | pyrosequencing | upstream | noncoding
BG4_1507 | BG4 | 3R | 17860711 | SNPlex | exon | replacement (P/T)
Toll_705 | Toll | 3R | 22624470 | pyrosequencing | upstream | noncoding
Toll_1186 | Toll | 3R | 22624951 | SNPlex | 5' UTR | noncoding | Toll-RA, -RB
Toll_28569 | Toll | 3R | 22652334 | snpstream | 5' UTR | noncoding | Toll-RA, -RB
Toll_29040 | Toll | 3R | 22652805 | SNPlex | intron | noncoding | Toll-RA, -RB
Toll_40757 | Toll | 3R | 22664522 | snpstream | exon | replacement (K/R) | Toll-RA, -RB
Toll_40862 | Toll | 3R | 22664627 | SNPlex | exon | replacement (T/I) | Toll-RA, -RB
Toll_41582 | Toll | 3R | 22665347 | snpstream | exon | replacement (R/H) | Toll-RA, -RB
Toll_41851 | Toll | 3R | 22665616 | SNPlex | exon | replacement (L/V) | Toll-RA, -RB
spz_4241 | [NAME] | 3R | 22892549 | SNPlex | exon | replacement (T/P) | -RA, -RB, -RH; intron: -RC, --RD, -RE, -RF, -RI, -RJ
spz_1741 | [NAME] | 3R | 22895049 | SNPlex | 5' UTR | noncoding | all
spz_897 | [NAME] | 3R | 22895893 | snpstream | upstream | noncoding
spz_862 | [NAME] | 3R | 22895928 | pyrosequencing | upstream | noncoding
spz_759 | [NAME] | 3R | 22896031 | SNPlex | upstream | noncoding
spz_595 | [NAME] | 3R | 22896195 | pyrosequencing | upstream | noncoding
spz_180 | [NAME] | 3R | 22896610 | SNPlex | upstream | noncoding
pll_2709 | pll | 3R | 23077193 | SNPlex | exon | silent
pll_2099 | pll | 3R | 23077803 | snpstream | exon | silent
pll_1214 | pll | 3R | 23078688 | SNPlex | 5' UTR | noncoding
pll_953 | pll | 3R | 23078949 | SNPlex | upstream | noncoding
pll_441 | pll | 3R | 23079461 | SNPlex | upstream | noncoding
CecAB_1096 | CecA1 | 3R | 26036692 | SNPlex | exon | replacement (V/A)
CecAB_2344 | CecA2 | 3R | 26037940 | SNPlex | 5' UTR | noncoding
CecAB_2394 | CecA2 | 3R | 26037990 | SNPlex | exon | replacement (A/T)
CecAB_3759 | CecB | 3R | 26039355 | pyrosequencing | exon | silent
CecC_1290 | CecC | 3R | 26042496 | SNPlex | exon | silent
CecC_1354 | CecC | 3R | 26042560 | snpstream | 3' UTR | noncoding
CecC_1660 | CecC | 3R | 26042866 | SNPlex | downstream | noncoding