Spreadsheet: 2dad1b4c-de77-45a3-9ab5-cd50d5f4d6f3
Sheet: Clin

Additional File 1. Clinical-pathological information associated with training set subtypes
Sample | Menopause | Age | Prototype Subtype | Grade | ER | PR | HER2 | [NAME] | [NAME] | [NAME] | Nodes | STAGE
TrS-CC0503668 | POST | 56 | LumA | II | POS | POS | NEG | 2+ | NONAMP | 2 | 0 | 2A
TrS-CC0503687 | POST | 72 | Her2 | III | NEG | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0503690 | POST | 69 | LumA | II | POS | POS | NEG | 2+ | NONAMP | 2 | 1 | 2B
TrS-CC0503694 | POST | 69 | LumA | I | POS | POS | NEG | 2+ | NONAMP | 1C | 0 | 1
TrS-CC0503697 | PRE | 49 | LumA | II | POS | POS | NEG | NA | NONAMP | 2 | 0 | 2A
TrS-CC0503698 | POST | 49 | LumB | III | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0503699 | PRE | 42 | LumA | II | POS | POS | NEG | 0+ | NA | 1C | 0 | 1
TrS-CC0503700 | PRE | 49 | LumA | II | POS | POS | NEG | 0+ | NA | 1 | 1 | 2A
TrS-CC0503701 | POST | 47 | LumB | III | POS | POS | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0604498 | POST | 53 | LumA | II | POS | POS | NEG | 0+ | NA | 2 | 2 | 3A
TrS-CC0604500 | POST | 82 | Basal | III | NEG | NEG | NEG | 2+ | NONAMP | 1 | 0 | 1
TrS-CC0604501 | POST | 76 | LumA | II | POS | NEG | NEG | 0+ | NA | 1 | X | 1
TrS-CC0604502 | PRE | 39 | LumA | II | POS | POS | NEG | 0+ | NA | 1 | 0 | 1
TrS-CC0604506 | POST | 79 | LumA | II | POS | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0604507 | PRE | 49 | Basal | III | NEG | NEG | NEG | 0+ | NA | 1 | 1 | 2A
TrS-CC0604509 | PRE | 37 | Basal | I | NEG | POS | NEG | 0+ | NA | 1 | 1 | 1
TrS-CC0604510 | POST | 54 | Basal | III | NEG | NEG | NEG | 0+ | NA | 1C | 0 | 1
TrS-CC0604512 | PRE | 50 | Her2 | II | NEG | NEG | NEG | 0+ | NA | 2 | 1 | 2B
TrS-CC0604513 | PRE | 26 | LumB | III | POS | POS | NEG | 0+ | NA | 2 | X | 2A
TrS-CC0604517 | PRE | 38 | LumB | III | POS | POS | POS | 3+ | NA | 1 | 1 | 2A
[NAME] | POST | 55 | Basal | III | NEG | NEG | NEG | 0+ | NA | 3 | 1 | 3A
TrS-CC0604519 | PRE | 51 | LumA | II | POS | POS | NEG | 0+ | NA | 2 | 1A | 2B
TrS-CC0604520 | POST | 57 | LumB | III | POS | POS | NEG | 0+ | NA | 2 | 1 | 2B
TrS-CC0604522 | POST | 54 | Basal | III | NEG | NEG | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0604541 | POST | 57 | Her2 | III | NEG | NEG | POS | 3+ | NA | 2 | 1 | 2B
TrS-CC0604549 | POST | 87 | LumA | III | POS | POS | NEG | 2+ | NONAMP | 2 | X | 2A
TrS-CC0604584 | POST | 46 | LumB | II | POS | NEG | NEG | 2+ | NA | 4B | 3C | 4
[NAME] | PRE | 46 | Basal | III | NEG | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0604588 | PRE | 30 | LumA | I | POS | POS | NEG | 0+ | NA | 1A | X | 1
TrS-CC0604599 | POST | 65 | LumA | II | POS | POS | NEG | 0+ | NA | 1C | 0 | 1
TrS-CC0604605 | POST | 64 | Her2 | II | NEG | POS | POS | 3+ | NA | 1mic | 0 | 1
TrS-CC0604607 | POST | 69 | LumA | I | POS | POS | NEG | 0+ | NA | 1 | 1 | 2A
TrS-CC0604628 | POST | 70 | Basal | I | POS | POS | NEG | 2+ | NONAMP | 1A | X | 1
TrS-CC0604632 | POST | 64 | LumA | I | POS | POS | NEG | 0+ | NA | 1C | 0 | 1
TrS-CC0604644 | POST | 62 | LumA | I | POS | POS | NEG | 0+ | NA | 1A | 0 | 1
TrS-CC0706119 | PRE | 48 | LumA | III | POS | POS | NEG | 2+ | NONAMP | 1 | 0 | 1
TrS-CC0706120 | POST | 63 | Basal | III | NEG | NEG | NEG | NA | NA | 1C | 1 | 1
TrS-CC0706121 | PRE | 37 | Her2 | III | POS | POS | POS | 3+ | NA | 1 | X | 1
TrS-CC0706122 | PRE | 31 | Her2 | III | POS | POS | POS | 3+ | NA | 1C | X | 1
TrS-CC0706123 | PRE | 45 | LumA | II | POS | POS | POS | 2+ | AMP | 2 | 1 | 2B
TrS-CC0706125 | POST | 50 | LumA | I | POS | POS | NEG | 1+ | NA | 1C | 0 | 1
TrS-CC0706126 | POST | 49 | LumA | III | POS | POS | NEG | 2+ | NA | 1C | 0 | 1
TrS-CC0706129 | POST | 53 | Her2 | III | NEG | NEG | NEG | 2+ | EQUIVOCAL | 1 | 0 | 1
TrS-CC0706130 | POST | 74 | Basal | III | NEG | NEG | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0706131 | POST | 54 | LumB | III | POS | POS | NEG | 2+ | NONAMP | 2 | 0 | 2A
TrS-CC0706136 | POST | 50 | Her2 | II | POS | POS | POS | 3+ | NA | 1 | 1 | 2A
[NAME] | POST | 86 | Her2 | III | NEG | NEG | POS | 3+ | NA | 2 | 1 | 2B
TrS-CC0706218 | PRE | 34 | Basal | III | NEG | NEG | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0706220 | UNK | 40 | Basal | III | NEG | NEG | NEG | 1+ | NA | 4 | 3C | 4
TrS-CC0706221 | POST | 63 | Basal | I | POS | POS | NEG | 2+ | NA | 1 | 0 | 1
TrS-CC0706222 | POST | 50 | LumA | II | POS | POS | NEG | 1+ | NA | 1 | 1 | 2A
TrS-CC0706223 | POST | 61 | LumA | I | POS | POS | POS | 3+ | NA | 3 | 1 | 3A
TrS-CC0706224 | POST | 66 | LumA | I | POS | POS | NEG | 2+ | NA | 1 | 0 | 1
TrS-CC0706226 | PRE | 42 | LumA | I | POS | POS | NEG | 0+ | NA | 1 | 0 | 1
TrS-CC0706227 | POST | 65 | Basal | III | NEG | NEG | NEG | 0+ | NA | 1 | X | 1
TrS-CC0706228 | PRE | 43 | LumB | III | POS | NEG | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0706229 | PRE | 47 | LumA | III | POS | POS | NEG | 2+ | NONAMP | 3 | 1A | 3A
TrS-CC0805105 | POST | 59 | LumB | III | POS | NEG | NEG | 1+ | NA | 1C | 0 | 1
TrS-CC0805106 | PRE | 48 | Basal | III | NEG | NEG | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0805113 | POST | 64 | Her2 | III | NEG | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0805114 | POST | 58 | LumA | II | POS | POS | NEG | 0+ | NA | 1 | 0 | 1
TrS-CC0805119 | UNK | 78 | LumA | III | POS | POS | NEG | 2+ | NONAMP | 1 | 0 | 1
TrS-CC0805120 | POST | 59 | Basal | III | NEG | NEG | NEG | 2+ | NONAMP | 1 | 0 | 1
TrS-CC0805123 | PRE | 48 | Basal | III | NEG | NEG | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0805129 | POST | 66 | Her2 | III | NEG | NEG | NEG | 2+ | NONAMP | 2 | 0 | 2A
TrS-CC0805131 | POST | 68 | Basal | III | NEG | NEG | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0805132 | POST | 66 | Basal | II | NEG | NEG | NEG | 0+ | NA | 1 | 0 | 1
TrS-CC0805136 | POST | 55 | Her2 | III | POS | NEG | POS | 3+ | NA | 1 | 0 | 1
TrS-CC0805137 | POST | 68 | Her2 | III | POS | POS | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0805143 | PRE | 29 | LumB | III | POS | NEG | POS | 3+ | NA | 3 | 1 | 3A
TrS-CC0805152 | PRE | 51 | Her2 | III | NEG | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0805155 | POST | 56 | LumA | III | POS | POS | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0805165 | PRE | 46 | LumB | III | POS | POS | POS | 3+ | NA | 1 | 0 | 1
TrS-CC0805172 | PRE | 47 | LumA | I | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0805173 | POST | 66 | Her2 | II | POS | NEG | POS | 3+ | NA | 1 | 0 | 1
TrS-CC0805180 | PRE | 43 | Basal | III | NEG | NEG | NEG | 2+ | NONAMP | 4 | 0 | 3B
TrS-CC0805184 | PRE | 49 | Basal | II | NEG | NEG | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0805187 | POST | 60 | Basal | III | NEG | NEG | NEG | 0+ | NA | 4 | 0 | 3B
TrS-CC0805191 | PRE | 49 | Her2 | II | POS | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0805193 | POST | 63 | Basal | III | POS | NEG | NEG | 0+ | NA | 1 | 0 | 1
TrS-CC0805201 | POST | 66 | Her2 | III | POS | NEG | POS | 3+ | NA | 3 | 0 | 2B
TrS-CC0805202 | PRE | 47 | Her2 | III | POS | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0805204 | PRE | 32 | LumA | I | POS | POS | NEG | 0+ | NA | 1 | 0 | 1
TrS-CC0805207 | PRE | 45 | LumA | II | POS | POS | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0805210 | PRE | 35 | Basal | III | NEG | NEG | NEG | 0+ | NA | 3 | 0 | 2B
TrS-CC0805215 | PRE | 35 | LumA | I | POS | POS | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0805218 | POST | 70 | LumB | III | POS | POS | NEG | 2+ | NONAMP | 2 | 1 | 2B
TrS-CC0805219 | POST | 72 | Basal | III | POS | NEG | NEG | 0+ | NA | 3 | 0 | 2B
TrS-CC0805221 | POST | 76 | LumA | III | POS | POS | NEG | 1+ | NA | 3 | 1 | 3A
TrS-CC0805469 | POST | 68 | Her2 | II | POS | POS | NEG | 0+ | NA | 1 | 0 | 1
[NAME] | POST | 69 | LumA | III | POS | POS | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0805471 | POST | 54 | LumB | III | POS | POS | NEG | 1+ | NA | 2 | 0(I+) | 2A
TrS-CC0805472 | POST | 63 | LumA | II | POS | POS | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0805473 | PRE | 45 | Basal | III | NEG | NEG | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0805474 | POST | 79 | LumA | I | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0805475 | PRE | 44 | Basal | III | NEG | NEG | NEG | 1+ | NA | 1C | 0 | 1
TrS-CC0805895 | POST | 73 | LumB | III | POS | POS | POS | 3+ | NA | 1B | 1 | 2A
TrS-CC0805897 | POST | OVER 92 | Her2 | II | POS | NEG | NEG | 1+ | NA | 1 | X | 1
TrS-CC0805899 | POST | 73 | LumB | II | POS | POS | NEG | 1+ | NA | 3 | 1 | 3A
TrS-CC0808017 | POST | 58 | LumA | II | POS | POS | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0808130 | POST | 60 | LumA | II | POS | POS | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0808132 | POST | 59 | LumB | III | POS | POS | POS | 2+ | AMP | 2 | 0 | 2A
TrS-CC0808134 | POST | 60 | Her2 | II | POS | NEG | POS | 3+ | NA | 2 | 2A | 3A
TrS-CC0808139 | PRE | 40 | Basal | III | POS | NEG | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0808141 | POST | 43 | Her2 | III | NEG | NEG | POS | 2+ | AMP | 1 | 2A | 3A
TrS-CC0808145 | POST | 66 | Her2 | III | NEG | NEG | POS | 2+ | AMP | 1 | 2A | 3A
TrS-CC0808147 | POST | 82 | LumB | III | POS | POS | NEG | 1+ | NA | 1C | X | 1
TrS-CC0808149 | POST | 67 | LumA | Unknown | POS | POS | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0808151 | POST | 61 | LumA | II | POS | POS | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0808159 | PRE | 51 | Basal | III | NEG | NEG | NEG | 1+ | NA | 2 | 1 | 2B
TrS-CC0808161 | POST | 80 | Basal | III | NEG | NEG | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0808164 | POST | 49 | Her2 | III | POS | POS | POS | 3+ | NA | 2 | 1A | 2B
TrS-CC0808166 | PRE | 52 | LumA | II | POS | POS | NEG | NA | NA | 1C | X | 1
TrS-CC0808172 | PRE | 47 | LumA | II | POS | POS | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0808174 | POST | 67 | LumA | III | POS | NEG | NEG | 1+ | NA | 2 | 1B | 2B
TrS-CC0808176 | PRE | 41 | Her2 | III | POS | POS | POS | 3+ | NA | 2 | 3A | 3C
TrS-CC0808181 | POST | 58 | LumB | II | POS | POS | POS | 3+ | NA | 2 | 1C | 2B
TrS-CC0808183 | POST | 57 | Her2 | III | NEG | NEG | POS | 3+ | NA | 2 | 2A | 3A
TrS-CC0808185 | POST | 74 | Basal | III | NEG | NEG | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0808191 | POST | 73 | Her2 | III | NEG | NEG | NEG | 0+ | NA | 2 | 1 | 2B
TrS-CC0808193 | POST | 72 | Basal | II | NEG | NEG | NEG | NA | NA | 2 | 1A | 2B
TrS-CC0808195 | POST | 76 | Her2 | III | NEG | NEG | POS | 3+ | NA | 1 | 0 | 1
TrS-CC0808202 | PRE | 44 | Normal | NormalReduction | NA | NA | NA | NA | NA | NA | NA | NA
TrS-CC0808233 | PRE | 43 | Basal | III | NEG | POS | POS | 3+ | NA | 2 | 1 | 2B
TrS-CC0808334 | UNK | 49 | Normal | NormalReduction | NA | NA | NA | NA | NA | NA | NA | NA
TrS-CC0900045 | POST | 37 | LumB | I | POS | POS | NEG | 1+ | NA | 2 | 3 | 3C
TrS-CC0900048 | PRE | 49 | Basal | II | NEG | NEG | NEG | 1+ | NA | 3 | 1 | 3A
TrS-CC0900051 | POST | 60 | LumA | I | POS | POS | NEG | 2+ | NONAMP | 2 | 1 | 2B
TrS-CC0900057 | POST | 51 | LumB | II | POS | POS | NEG | 2+ | NONAMP | 3 | 2 | 3A
TrS-CC0900060 | POST | 48 | Basal | III | POS | POS | Unknown | Unknown | Unknown | 1 | 0 | 1
TrS-CC0900066 | POST | 70 | LumA | I | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0900072 | POST | 53 | Her2 | III | POS | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0900084 | POST | 60 | Her2 | II | NEG | NEG | NEG | 2+ | NONAMP | 3 | 0 | 2B
TrS-CC0900090 | POST | 60 | LumA | II | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0900096 | POST | 44 | Basal | III | NEG | NEG | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0900099 | POST | 46 | LumA | I | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0900102 | POST | 56 | LumB | III | POS | NEG | NEG | 0+ | NA | 1 | 0 | 1
TrS-CC0900105 | PRE | 50 | LumA | I | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0900108 | UNK | UNK | LumB | Unknown | Unknown | Unknown | Unknown | Unknown | Unknown | Unknown | Unknown | Unknown
TrS-CC0900120 | PRE | 48 | LumA | II | POS | POS | NEG | 0+ | NA | 2 | 0 | 2A
TrS-CC0900126 | POST | 46 | LumA | I | POS | POS | NEG | 1+ | NA | 1 | 0 | 1
TrS-CC0900133 | POST | 79 | LumB | II | POS | NEG | NEG | 2+ | NONAMP | 2 | 0 | 2A
TrS-CC0900139 | POST | 60 | LumA | II | POS | POS | NEG | NA | NA | 2 | 1 | 2B
TrS-CC0900142 | POST | 62 | Her2 | III | NEG | NEG | NEG | 0+ | NA | 2 | 1 | 2B
TrS-CC0900148 | PRE | 40 | LumB | II | POS | POS | POS | 3+ | NA | 2 | 1 | 2B
TrS-CC0900154 | POST | 78 | LumB | II | POS | POS | NEG | 1+ | NA | 2 | 0 | 2A
[NAME]-CC0900157 | POST | 63 | LumB | III | POS | POS | NEG | 1+ | NA | 2 | 0 | 2A
TrS-CC0900166 | POST | 74 | Basal | III | NEG | NEG | NEG | 2+ | NONAMP | 1 | 0 | 1
TrS-CC0900169 | PRE | 40 | Basal | III | NEG | NEG | NEG | 1+ | NA | 4 | 1 | 3B
TrS-CC0900175 | POST | 65 | LumA | II | POS | POS | NEG | 2+ | NONAMP | 1 | 0 | 1
TrS-CC0900178 | POST | 62 | Her2 | III | NEG | NEG | NEG | 0+ | NA | 2 | 1 | 2B
TrS-CC0900181 | POST | 63 | LumB | I | POS | NEG | POS | 3+ | NA | 2 | 0 | 2A
TrS-CC0908736 | PRE | 34 | Normal | NormalReduction | NA | NA | NA | NA | NA | NA | NA | NA
TrS-CC0908739 | POST | 50 | Normal | NormalReduction | NA | NA | NA | NA | NA | NA | NA | NA