Spreadsheet: 43102bd7-5e21-4435-9af4-fb3e96111fa5
Sheet: 1000GP samples

ID | population | pilot | SLX_RP_spancov | 454_SR_basecov | SLX_basecov | Genotyped_MEI_ins | Genotyped_MEI_del | SLX | 454 | AB | PCR sample
NA12878 | CEU | trio | 17.4 | 11 | 15.9 | 1110 | 958 | 1 | 1 | 1 | 1
NA12891 | CEU | trio | 8.4 | 0 | 14.9 | 745 | 935 | 1 | 0 | 0 | 1
NA12892 | CEU | trio | 11.3 | 0 | 9.2 | 739 | 939 | 1 | 0 | 0 | 1
NA19238 | YRI | trio | 15.9 | 0 | 7.6 | 1007 | 1066 | 1 | 0 | 0 | 1
NA19239 | YRI | trio | 27.6 | 0 | 12.2 | 988 | 1010 | 1 | 0 | 0 | 1
NA19240 | YRI | trio | 32 | 5.6 | 16.9 | 1296 | 1076 | 1 | 1 | 1 | 1 | Notes:
NA06985 | CEU | lowcov | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 |  | SLX_RP_spancov | Span coverage of Illumina paired-end data
NA06986 | CEU | lowcov | 3 | 0 | 2.9 | 566 | 983 | 1 | 0 | 1 | 1 | 454_SR_basecov | Base coverage of 454 reads (FLX and titanium)
NA06994 | CEU | lowcov | 0 | 0 | 4.9 | 0 | 829 | 1 | 0 | 1 |  | SLX_basecov | Base coverage of Illumina  data, including single end
NA07000 | CEU | lowcov | 2.8 | 0 | 1.4 | 555 | 829 | 1 | 0 | 1 |  | Genotyped_MEI_ins | Number of genotyped MEI sites detected as insertions in this sample
NA07037 | CEU | lowcov | 3.1 | 0 | 2.7 | 626 | 976 | 1 | 0 | 0 |  | Genotyped_MEI_del | Number of genotyped MEI sites detected as deletions in this sample
NA07051 | CEU | lowcov | 3.3 | 0 | 3.9 | 594 | 1016 | 1 | 0 | 0 |  | SLX | Illumina data available from 1000 Genomes Project
NA07346 | CEU | lowcov | 1.9 | 1.5 | 1.9 | 693 | 960 | 1 | 1 | 0 | 1 | 454 | 454 data available
NA07347 | CEU | lowcov | 1.3 | 1.9 | 1.2 | 613 | 857 | 1 | 1 | 0 | 1 | AB | AB SOLiD data available
NA07357 | CEU | lowcov | 2.8 | 0 | 2.2 | 557 | 918 | 1 | 0 | 1 | 1
NA10847 | CEU | lowcov | 2.3 | 0 | 3.4 | 572 | 0 | 1 | 0 | 0
NA10851 | CEU | lowcov | 3.2 | 0 | 3.5 | 603 | 0 | 1 | 0 | 1
NA11829 | CEU | lowcov | 1.2 | 0 | 1 | 410 | 837 | 1 | 0 | 1
NA11830 | CEU | lowcov | 1.2 | 0 | 2.2 | 401 | 887 | 1 | 0 | 1
NA11831 | CEU | lowcov | 2 | 0 | 2 | 511 | 946 | 1 | 0 | 1 | 1
NA11832 | CEU | lowcov | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1
NA11840 | CEU | lowcov | 0 | 2.4 | 0 | 207 | 0 | 0 | 1 | 1
NA11881 | CEU | lowcov | 1.2 | 2.1 | 1.4 | 701 | 839 | 1 | 1 | 0 | 1
NA11894 | CEU | lowcov | 1.1 | 2.1 | 1.5 | 617 | 854 | 1 | 1 | 0 | 1
NA11918 | CEU | lowcov | 2.5 | 2 | 2.7 | 701 | 842 | 1 | 1 | 0
NA11919 | CEU | lowcov | 1.6 | 0 | 3.1 | 478 | 989 | 1 | 0 | 0
NA11920 | CEU | lowcov | 2.5 | 0 | 2.1 | 539 | 983 | 1 | 0 | 1
NA11931 | CEU | lowcov | 0.8 | 2 | 1.4 | 609 | 812 | 1 | 1 | 0
NA11992 | CEU | lowcov | 1.8 | 0 | 3.3 | 508 | 1010 | 1 | 0 | 1
NA11993 | CEU | lowcov | 1.3 | 0 | 1.4 | 411 | 813 | 1 | 0 | 1
NA11994 | CEU | lowcov | 1.3 | 0 | 2.6 | 437 | 905 | 1 | 0 | 1
NA11995 | CEU | lowcov | 1.4 | 0 | 1.5 | 451 | 865 | 1 | 0 | 1
NA12003 | CEU | lowcov | 2.6 | 0 | 2.4 | 546 | 972 | 1 | 0 | 1 | 1
NA12004 | CEU | lowcov | 1.5 | 0 | 1.4 | 472 | 0 | 1 | 0 | 1
NA12005 | CEU | lowcov | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1
NA12006 | CEU | lowcov | 1 | 0 | 1.1 | 428 | 766 | 1 | 0 | 1
NA12043 | CEU | lowcov | 1.3 | 2.1 | 1.2 | 682 | 833 | 1 | 1 | 0 | 1
NA12044 | CEU | lowcov | 1.7 | 0 | 1.8 | 496 | 887 | 1 | 0 | 1
NA12045 | CEU | lowcov | 1.7 | 2.1 | 1.4 | 636 | 870 | 1 | 1 | 0
NA12144 | CEU | lowcov | 1.9 | 0 | 1.6 | 513 | 861 | 1 | 0 | 1
NA12154 | CEU | lowcov | 1.6 | 0 | 1.5 | 486 | 889 | 1 | 0 | 1
NA12155 | CEU | lowcov | 1.1 | 0 | 1.1 | 417 | 906 | 1 | 0 | 0
NA12156 | CEU | lowcov | 1.3 | 0 | 1.1 | 410 | 780 | 1 | 0 | 1
NA12234 | CEU | lowcov | 0 | 2 | 0 | 189 | 0 | 0 | 1 | 0
NA12249 | CEU | lowcov | 2.5 | 2.3 | 2.1 | 869 | 937 | 1 | 1 | 0
NA12287 | CEU | lowcov | 0.7 | 2.1 | 1.4 | 590 | 810 | 1 | 1 | 0
NA12414 | CEU | lowcov | 0.9 | 0 | 1 | 424 | 0 | 1 | 0 | 1
NA12489 | CEU | lowcov | 1.1 | 0 | 1.2 | 458 | 750 | 1 | 0 | 1
NA12716 | CEU | lowcov | 2.7 | 0 | 6.8 | 534 | 968 | 1 | 0 | 0
NA12717 | CEU | lowcov | 2.5 | 0 | 5.9 | 601 | 0 | 1 | 0 | 0
NA12749 | CEU | lowcov | 1 | 0 | 1.2 | 424 | 808 | 1 | 0 | 1
NA12750 | CEU | lowcov | 2.4 | 0 | 5 | 581 | 962 | 1 | 0 | 0
NA12751 | CEU | lowcov | 2.2 | 0 | 5.4 | 557 | 956 | 1 | 0 | 0
NA12760 | CEU | lowcov | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1
NA12761 | CEU | lowcov | 2.5 | 0 | 5.8 | 572 | 986 | 1 | 0 | 0
NA12762 | CEU | lowcov | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1
NA12763 | CEU | lowcov | 1.3 | 0 | 5 | 492 | 943 | 1 | 0 | 0
NA12776 | CEU | lowcov | 1.1 | 0 | 1.2 | 442 | 845 | 1 | 0 | 0
NA12812 | CEU | lowcov | 0 | 3.4 | 0 | 281 | 0 | 0 | 1 | 0
NA12813 | CEU | lowcov | 0 | 0 | 4 | 0 | 748 | 1 | 0 | 1
NA12814 | CEU | lowcov | 0 | 3.3 | 0 | 326 | 0 | 0 | 1 | 0
NA12815 | CEU | lowcov | 0 | 3.2 | 0 | 264 | 0 | 0 | 1 | 0
NA12828 | CEU | lowcov | 1.1 | 0 | 1.3 | 470 | 838 | 1 | 0 | 0 | 1
NA12872 | CEU | lowcov | 0 | 3.5 | 0 | 300 | 0 | 0 | 1 | 0
NA12873 | CEU | lowcov | 0 | 3.3 | 0 | 315 | 0 | 0 | 1 | 0
NA12874 | CEU | lowcov | 0 | 3.5 | 0 | 293 | 0 | 0 | 1 | 0
NA18486 | YRI | lowcov | 0.1 | 0 | 0.5 | 107 | 694 | 1 | 0 | 0
NA18489 | YRI | lowcov | 1.3 | 0 | 2.4 | 455 | 1028 | 1 | 0 | 0
NA18498 | YRI | lowcov | 1.3 | 0 | 2.1 | 476 | 973 | 1 | 0 | 0
NA18499 | YRI | lowcov | 1.4 | 0 | 1.7 | 527 | 1012 | 1 | 0 | 0
NA18501 | YRI | lowcov | 4.1 | 0 | 3.3 | 729 | 1129 | 1 | 0 | 0
NA18502 | YRI | lowcov | 2.7 | 0 | 3 | 691 | 0 | 1 | 0 | 0
NA18504 | YRI | lowcov | 1.3 | 0 | 2.6 | 487 | 1058 | 1 | 0 | 1 | 1
NA18505 | YRI | lowcov | 3.1 | 0 | 3.3 | 719 | 1066 | 1 | 0 | 0
NA18507 | YRI | lowcov | 0.9 | 0 | 1.1 | 400 | 789 | 1 | 0 | 0
NA18508 | YRI | lowcov | 3.1 | 0 | 2.6 | 722 | 1029 | 1 | 0 | 0
NA18510 | YRI | lowcov | 1.9 | 0 | 1.9 | 625 | 1074 | 1 | 0 | 0
NA18511 | YRI | lowcov | 0.9 | 0 | 1.1 | 458 | 864 | 1 | 0 | 0
NA18516 | YRI | lowcov | 0.6 | 0 | 2.1 | 396 | 932 | 1 | 0 | 0
NA18517 | YRI | lowcov | 2 | 0 | 2.3 | 637 | 1055 | 1 | 0 | 0
NA18519 | YRI | lowcov | 1.5 | 0 | 1.8 | 603 | 1037 | 1 | 0 | 0
NA18520 | YRI | lowcov | 0.7 | 0 | 1.9 | 389 | 1034 | 1 | 0 | 0
NA18522 | YRI | lowcov | 1.6 | 0 | 3.9 | 600 | 0 | 1 | 0 | 0
NA18523 | YRI | lowcov | 3 | 0 | 3 | 762 | 0 | 1 | 0 | 0
NA18526 | CHB | lowcov | 1.5 | 0 | 1.7 | 548 | 894 | 1 | 0 | 0
NA18532 | CHB | lowcov | 0.8 | 0 | 1.3 | 371 | 846 | 1 | 0 | 0
NA18537 | CHB | lowcov | 2.4 | 0 | 1.6 | 580 | 911 | 1 | 0 | 0
NA18542 | CHB | lowcov | 1.3 | 0 | 1.8 | 481 | 898 | 1 | 0 | 0 | 1
NA18545 | CHB | lowcov | 1.6 | 0 | 1.7 | 481 | 831 | 1 | 0 | 0
NA18547 | CHB | lowcov | 0.6 | 0 | 1.4 | 374 | 0 | 1 | 0 | 0
NA18550 | CHB | lowcov | 2.4 | 0 | 1.6 | 540 | 859 | 1 | 0 | 0
NA18552 | CHB | lowcov | 2.4 | 0 | 1.7 | 598 | 944 | 1 | 0 | 0
NA18555 | CHB | lowcov | 2.1 | 0 | 1.6 | 551 | 892 | 1 | 0 | 0
NA18558 | CHB | lowcov | 1.9 | 0 | 1.7 | 547 | 896 | 1 | 0 | 0
NA18561 | CHB | lowcov | 2.5 | 0 | 1.6 | 575 | 881 | 1 | 0 | 0
NA18562 | CHB | lowcov | 1.2 | 0 | 1 | 451 | 806 | 1 | 0 | 0
NA18563 | CHB | lowcov | 1.7 | 0 | 1.6 | 519 | 883 | 1 | 0 | 0 | 1
NA18564 | CHB | lowcov | 2.1 | 0 | 1.7 | 615 | 905 | 1 | 0 | 0
NA18566 | CHB | lowcov | 1.8 | 0 | 1.6 | 528 | 865 | 1 | 0 | 0
NA18570 | CHB | lowcov | 1.7 | 0 | 1.7 | 521 | 902 | 1 | 0 | 0
NA18571 | CHB | lowcov | 1.6 | 0 | 1.8 | 533 | 908 | 1 | 0 | 0
NA18572 | CHB | lowcov | 2 | 0 | 1.9 | 559 | 897 | 1 | 0 | 0 | 1
NA18573 | CHB | lowcov | 1.4 | 0 | 1.6 | 483 | 867 | 1 | 0 | 0
NA18576 | CHB | lowcov | 3.5 | 0 | 1.6 | 599 | 916 | 1 | 0 | 0
NA18577 | CHB | lowcov | 1.7 | 0 | 1.8 | 537 | 907 | 1 | 0 | 0 | 1
NA18579 | CHB | lowcov | 1.8 | 0 | 1.5 | 536 | 926 | 1 | 0 | 0
NA18582 | CHB | lowcov | 1 | 0 | 1.7 | 453 | 917 | 1 | 0 | 0
NA18592 | CHB | lowcov | 2.3 | 0 | 1.9 | 545 | 919 | 1 | 0 | 0
NA18593 | CHB | lowcov | 3 | 0 | 1.7 | 620 | 920 | 1 | 0 | 0
NA18603 | CHB | lowcov | 1.3 | 0 | 1.5 | 482 | 891 | 1 | 0 | 0
NA18605 | CHB | lowcov | 1.4 | 0 | 1.4 | 516 | 901 | 1 | 0 | 0
NA18608 | CHB | lowcov | 1.7 | 0 | 1.7 | 520 | 870 | 1 | 0 | 0
NA18609 | CHB | lowcov | 2.1 | 0 | 1.7 | 532 | 934 | 1 | 0 | 0
NA18638 | CHB | lowcov | 2.6 | 0 | 1.7 | 581 | 948 | 1 | 0 | 0
NA18853 | YRI | lowcov | 1.5 | 0 | 2.1 | 541 | 1078 | 1 | 0 | 0
NA18856 | YRI | lowcov | 1.4 | 0 | 1.5 | 526 | 0 | 1 | 0 | 0
NA18858 | YRI | lowcov | 1.5 | 0 | 2.6 | 607 | 1056 | 1 | 0 | 0
NA18861 | YRI | lowcov | 2.3 | 0 | 2.8 | 655 | 1041 | 1 | 0 | 0
NA18870 | YRI | lowcov | 2.8 | 0 | 2.2 | 641 | 1111 | 1 | 0 | 0 | 1
NA18871 | YRI | lowcov | 1.3 | 0 | 2.1 | 544 | 1094 | 1 | 0 | 0
NA18907 | YRI | lowcov | 3.9 | 0 | 2.8 | 772 | 0 | 1 | 0 | 0
NA18909 | YRI | lowcov | 1.9 | 0 | 1.6 | 631 | 964 | 1 | 0 | 0
NA18912 | YRI | lowcov | 1.1 | 0 | 3.4 | 445 | 1043 | 1 | 0 | 1 | 1
NA18916 | YRI | lowcov | 1.6 | 0 | 2.5 | 622 | 980 | 1 | 0 | 0
NA18940 | [NAME] | lowcov | 2.5 | 0 | 1.3 | 517 | 807 | 1 | 0 | 0
NA18942 | [NAME] | lowcov | 2 | 0 | 1.4 | 446 | 763 | 1 | 0 | 0 | 1
NA18943 | [NAME] | lowcov | 0.9 | 0 | 1.5 | 409 | 816 | 1 | 0 | 0 | 1
NA18944 | [NAME] | lowcov | 1.8 | 0 | 1.4 | 474 | 774 | 1 | 0 | 0 | 1
NA18945 | [NAME] | lowcov | 1.2 | 0 | 1.5 | 455 | 817 | 1 | 0 | 0 | 1
NA18947 | [NAME] | lowcov | 1.1 | 0 | 1.5 | 409 | 810 | 1 | 0 | 0
NA18948 | [NAME] | lowcov | 1.3 | 0 | 1.7 | 495 | 811 | 1 | 0 | 0
NA18949 | [NAME] | lowcov | 1.3 | 0 | 1.8 | 473 | 794 | 1 | 0 | 0
NA18951 | [NAME] | lowcov | 1 | 0 | 1.6 | 438 | 812 | 1 | 0 | 0
NA18952 | [NAME] | lowcov | 1.5 | 0 | 1.6 | 436 | 783 | 1 | 0 | 0
NA18953 | [NAME] | lowcov | 0.5 | 0 | 2 | 226 | 905 | 1 | 0 | 0 | 1
NA18956 | [NAME] | lowcov | 1.1 | 0 | 1.7 | 442 | 789 | 1 | 0 | 0
NA18959 | [NAME] | lowcov | 1.4 | 0 | 1.4 | 407 | 847 | 1 | 0 | 0
NA18960 | [NAME] | lowcov | 1.1 | 0 | 1.3 | 423 | 856 | 1 | 0 | 0
NA18961 | [NAME] | lowcov | 1.7 | 0 | 3 | 521 | 992 | 1 | 0 | 0
NA18964 | [NAME] | lowcov | 2.5 | 0 | 2.5 | 550 | 976 | 1 | 0 | 0
NA18965 | [NAME] | lowcov | 1.1 | 0 | 1.5 | 517 | 788 | 1 | 0 | 0
NA18967 | [NAME] | lowcov | 0 | 0 | 4.7 | 0 | 710 | 1 | 0 | 0
NA18968 | [NAME] | lowcov | 0 | 0 | 4 | 0 | 689 | 1 | 0 | 0
NA18969 | [NAME] | lowcov | 0 | 0.6 | 0 | 54 | 0 | 0 | 1 | 0
NA18970 | [NAME] | lowcov | 0 | 2.2 | 0 | 204 | 0 | 0 | 1 | 0
NA18971 | [NAME] | lowcov | 0 | 0 | 4.7 | 0 | 771 | 1 | 0 | 0
NA18972 | [NAME] | lowcov | 0 | 0 | 3.9 | 0 | 706 | 1 | 0 | 0
NA18973 | [NAME] | lowcov | 1.5 | 0 | 1.5 | 458 | 816 | 1 | 0 | 0
NA18974 | [NAME] | lowcov | 0 | 0 | 3.9 | 0 | 766 | 1 | 0 | 0
NA18975 | [NAME] | lowcov | 0 | 0 | 4.4 | 0 | 782 | 1 | 0 | 0
NA18976 | [NAME] | lowcov | 0 | 0 | 5.6 | 0 | 805 | 1 | 0 | 0
NA18980 | [NAME] | lowcov | 1.5 | 0 | 1 | 350 | 740 | 1 | 0 | 0
NA18981 | [NAME] | lowcov | 0 | 0 | 5.3 | 0 | 806 | 1 | 0 | 0
NA19005 | [NAME] | lowcov | 0.9 | 0 | 1.3 | 402 | 767 | 1 | 0 | 0
NA19093 | YRI | lowcov | 4.6 | 0 | 3.3 | 737 | 1107 | 1 | 0 | 0
NA19098 | YRI | lowcov | 0 | 0 | 2.8 | 0 | 774 | 1 | 0 | 0
NA19099 | YRI | lowcov | 2.7 | 0 | 2.7 | 705 | 1032 | 1 | 0 | 0
NA19102 | YRI | lowcov | 2.1 | 0 | 2.4 | 607 | 1093 | 1 | 0 | 0
NA19108 | YRI | lowcov | 2.3 | 0 | 3.9 | 735 | 1112 | 1 | 0 | 0
NA19114 | YRI | lowcov | 2.4 | 0 | 2.7 | 685 | 1044 | 1 | 0 | 0
NA19116 | YRI | lowcov | 0.9 | 0 | 2.4 | 434 | 877 | 1 | 0 | 0
NA19119 | YRI | lowcov | 0 | 0 | 3 | 0 | 759 | 1 | 0 | 0
NA19129 | YRI | lowcov | 1.6 | 0 | 1.8 | 611 | 0 | 1 | 0 | 0
NA19131 | YRI | lowcov | 0 | 0 | 3.6 | 0 | 763 | 1 | 0 | 0
NA19137 | YRI | lowcov | 0.8 | 0 | 5.7 | 228 | 909 | 1 | 0 | 1
[NAME] | YRI | lowcov | 3.5 | 0 | 8.9 | 729 | 1108 | 1 | 0 | 0
NA19141 | YRI | lowcov | 0 | 1.9 | 0 | 209 | 0 | 0 | 1 | 0
NA19143 | YRI | lowcov | 0 | 2.2 | 0 | 255 | 0 | 0 | 1 | 0
NA19144 | YRI | lowcov | 0 | 0 | 1.4 | 0 | 657 | 1 | 0 | 0
NA19147 | YRI | lowcov | 2.7 | 0 | 2.6 | 699 | 1067 | 1 | 0 | 0
NA19152 | YRI | lowcov | 0 | 0 | 5.8 | 0 | 903 | 1 | 0 | 0
NA19153 | YRI | lowcov | 0 | 0 | 3.6 | 0 | 772 | 1 | 0 | 0
NA19159 | YRI | lowcov | 0 | 0 | 3.7 | 0 | 863 | 1 | 0 | 0
NA19160 | YRI | lowcov | 0 | 0 | 4.7 | 0 | 898 | 1 | 0 | 0
NA19171 | YRI | lowcov | 0 | 0 | 1.7 | 0 | 692 | 1 | 0 | 1
NA19172 | YRI | lowcov | 0.7 | 0 | 2.2 | 387 | 1067 | 1 | 0 | 0
NA19190 | YRI | lowcov | 1.7 | 0 | 1.3 | 582 | 891 | 1 | 0 | 0
NA19200 | YRI | lowcov | 0 | 0 | 4.6 | 0 | 816 | 1 | 0 | 0
NA19201 | YRI | lowcov | 0 | 0 | 3.8 | 0 | 785 | 1 | 0 | 0 | 1
NA19204 | YRI | lowcov | 0 | 0 | 3.9 | 0 | 846 | 1 | 0 | 0
NA19207 | YRI | lowcov | 0 | 0 | 3.7 | 0 | 854 | 1 | 0 | 0
NA19209 | YRI | lowcov | 0 | 0 | 4.1 | 0 | 799 | 1 | 0 | 0
NA19210 | YRI | lowcov | 0.7 | 0 | 0.4 | 196 | 704 | 1 | 0 | 1 | 1
NA19225 | YRI | lowcov | 1.3 | 0 | 1.9 | 617 | 935 | 1 | 0 | 0
NA19257 | YRI | lowcov | 4.3 | 0 | 2.4 | 732 | 1024 | 1 | 0 | 0