Spreadsheet: 0e0a5b9b-a0e7-4ad6-8501-e2ff99064a0a
Sheet: GO enrichment on all 114cluster

Table S3. GO analysis on transcripts from all 114 clusters. Table 1. GO categories showing significantly (p-value cutoff 0.05) enriched processes in all 114 clusters. Table 2. GO categories and all relevant clusters, in which they occur are shown. Different representation of information provided in Table 1. Table 3. GO enrichment analysis (p-value cutoff 0.05) by using differentially expressed metabolic transcripts. Association of specific metabolites and relevant metabolic processes (biosynthesis, degradation, metabolism, and transport) in central carbon and nitrogen metabolism (CCNM) and clusters, in which they occur are shown.
Cluster_Number | GO_id | p-value | Name | Namespace | Definition
1 | GO:0043447 | 2.08328481423486e-05 | alkane biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2. [CHEBI:18310, GOC:jl, Wikipedia:Alkane]
1 | GO:0010025 | 0.000192890234268034 | wax biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:[PHONE]]
1 | GO:0010102 | 0.000816161493013039 | lateral root morphogenesis | biological_process | The process in which the anatomical structures of a lateral root are generated and organized. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators]
1 | GO:0006723 | 0.00271826031340888 | cuticle hydrocarbon biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hydrocarbons that make up the cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [GOC:ai]
1 | GO:0030397 | 0.00271826031340888 | membrane disassembly | biological_process | The controlled breakdown of any cell membrane in the context of a normal process such as autophagy. [GOC:mah]
1 | GO:0033466 | 0.00271826031340888 | trans-zeatin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of trans-zeatin, (2E)-2-methyl-4-(9H-purin-6-ylamino)but-2-en-1-ol. [CHEBI:16522, GOC:mah]
1 | GO:0042178 | 0.00271826031340888 | xenobiotic catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:jl]
1 | GO:0006559 | 0.00542956521899543 | L-phenylalanine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. [GOC:go_curators]
1 | GO:0006572 | 0.00542956521899543 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. [GOC:go_curators]
1 | GO:0016998 | 0.0108313755199991 | cell wall macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. [GOC:go_curators]
1 | GO:0007205 | 0.0135219141785556 | protein kinase C-activating G-protein coupled receptor signaling pathway | biological_process | The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of protein kinase C (PKC). PKC is activated by second messengers including diacylglycerol (DAG). [GOC:mah, GOC:signaling]
1 | GO:0048235 | 0.0135219141785556 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a haploid sperm cell within the plant gametophyte. [CL:0000366, GOC:jid, GOC:mtg_sensu]
1 | GO:1990051 | 0.0135219141785556 | activation of protein kinase C activity | biological_process | Any process that initiates the activity of the inactive enzyme protein kinase C. [PMID:3156004]
1 | GO:0048232 | 0.0215522629846379 | male gamete generation | biological_process | Generation of the male gamete; specialised haploid cells produced by meiosis and along with a female gamete takes part in sexual reproduction. [GOC:dph, GOC:jid]
1 | GO:0009636 | 0.0295210571807993 | response to toxic substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus. [GOC:lr]
1 | GO:0007186 | 0.0321637196871576 | G-protein coupled receptor signaling pathway | biological_process | A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, Wikipedia:G_protein-coupled_receptor]
1 | [NAME] | 0.0321637196871576 | activation of protein kinase activity | biological_process | Any process that initiates the activity of an inactive protein kinase. [GOC:mah]
1 | GO:0001934 | 0.0347996083070459 | positive regulation of protein phosphorylation | biological_process | Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to amino acids within a protein. [GOC:hjd]
1 | GO:0009816 | 0.0347996083070459 | defense response to bacterium, incompatible interaction | biological_process | A response of an organism to a bacterium that prevents the occurrence or spread of disease. [GOC:lr]
1 | GO:0010305 | 0.0347996083070459 | leaf vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the leaf of vascular plants. [GOC:tair_curators]
1 | GO:0010311 | 0.0347996083070459 | lateral root formation | biological_process | The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators, PMID:17259263]
1 | GO:0010562 | 0.0347996083070459 | positive regulation of phosphorus metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. [GOC:dph, GOC:tb]
1 | GO:0042327 | 0.0347996083070459 | positive regulation of phosphorylation | biological_process | Any process that activates or increases the frequency, rate or extent of addition of phosphate groups to a molecule. [GOC:jl]
1 | GO:0045860 | 0.0347996083070459 | positive regulation of protein kinase activity | biological_process | Any process that activates or increases the frequency, rate or extent of protein kinase activity. [GOC:go_curators]
1 | GO:0045937 | 0.0347996083070459 | positive regulation of phosphate metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving phosphates. [GOC:go_curators]
1 | GO:0044550 | 0.0351054157304602 | secondary metabolite biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl]
1 | GO:0033674 | 0.0374287393212805 | positive regulation of kinase activity | biological_process | Any process that activates or increases the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [GOC:mah]
1 | GO:0042335 | 0.0374287393212805 | cuticle development | biological_process | The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:[PHONE]]
1 | GO:0055046 | 0.0400511289739051 | microgametogenesis | biological_process | The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure. [GOC:mtg_plant]
1 | GO:0009611 | 0.041152914990028 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
1 | GO:0031401 | 0.0426667934725879 | positive regulation of protein modification process | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. [GOC:mah, GOC:tb]
1 | GO:0009725 | 0.0445638969009748 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
1 | GO:0000038 | 0.0452757489889044 | very long-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:hjd]
1 | GO:0051347 | 0.0452757489889044 | positive regulation of transferase activity | biological_process | Any process that activates or increases the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. [GOC:ai]
1 | GO:0010039 | 0.0478780116580206 | response to iron ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm]
1 | GO:0009733 | 0.0482307642091565 | response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]
2 | GO:0000911 | 2.40417829786307e-07 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
2 | GO:0048451 | 1.09201895365853e-06 | petal formation | biological_process | The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
2 | GO:0048453 | 1.09201895365853e-06 | sepal formation | biological_process | The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
2 | GO:0000226 | 0.000127933781311699 | microtubule cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
2 | GO:0008283 | 0.000200684475791158 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
2 | GO:0006275 | 0.00181951797332712 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
2 | GO:0016572 | 0.00188883308938308 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
2 | GO:0006270 | 0.00253167638019572 | DNA replication initiation | biological_process | The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:[PHONE]]
2 | GO:0006306 | 0.00379605110202044 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
2 | GO:1901990 | 0.00379743948604429 | regulation of mitotic cell cycle phase transition | biological_process | Any process that modulates the frequency, rate or extent of mitotic cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
2 | GO:0051567 | 0.00434607368876387 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
2 | GO:0031048 | 0.00572801277835507 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
2 | GO:0007108 | 0.00623600895428079 | cytokinesis, initiation of separation | biological_process | The process involved in starting cell separation. [GOC:clt, GOC:dph, GOC:tb]
2 | GO:0009835 | 0.00623600895428079 | fruit ripening | biological_process | An aging process that has as participant a fruit. Ripening causes changes in one or more characteristics of a fruit (color, aroma, flavor, texture, hardness, cell wall structure) and may make it more attractive to animals and aid in seed dispersal. [GOC:lr]
2 | GO:0010422 | 0.00623600895428079 | regulation of brassinosteroid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of brassinosteroids. [PMID:16857903]
2 | GO:0006346 | 0.0081563923168455 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
2 | GO:0046165 | 0.00903829090262491 | alcohol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, GOC:ai]
2 | GO:0016126 | 0.0119332804153485 | sterol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators]
2 | GO:0016125 | 0.0123577101407843 | [NAME] process | biological_process | The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:[PHONE]]
2 | GO:0010089 | 0.0147661372969215 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
2 | GO:0007091 | 0.0185945609077617 | metaphase/anaphase transition of mitotic cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the destruction of mitotic cyclins. [GOC:mtg_cell_cycle, PMID:10465783]
2 | GO:0007094 | 0.0185945609077617 | mitotic spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle, PMID:12360190]
2 | GO:0030071 | 0.0185945609077617 | regulation of mitotic metaphase/anaphase transition | biological_process | Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle. [GOC:mah]
2 | GO:0031577 | 0.0185945609077617 | spindle checkpoint | biological_process | A cell cycle checkpoint that delays progression through the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle. [GOC:mah, PMID:15897186]
2 | GO:0044784 | 0.0185945609077617 | metaphase/anaphase transition of cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase as part of the cell cycle. [GOC:mtg_cell_cycle]
2 | GO:0045839 | 0.0185945609077617 | negative regulation of mitosis | biological_process | Any process that stops, prevents or reduces the rate or extent of mitosis. Mitosis is the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother. [GOC:dph, GOC:go_curators, GOC:tb]
2 | GO:0045841 | 0.0185945609077617 | negative regulation of mitotic metaphase/anaphase transition | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the mitotic metaphase to anaphase transition. [GOC:go_curators]
2 | GO:0051784 | 0.0185945609077617 | negative regulation of nuclear division | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. [GOC:ai]
2 | GO:0071173 | 0.0185945609077617 | spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mah]
2 | GO:0071174 | 0.0185945609077617 | mitotic spindle checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, or that delays completion of anaphase until chromosomes are attached to the spindle. [GOC:mtg_cell_cycle]
2 | GO:1902099 | 0.0185945609077617 | regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
2 | GO:1902100 | 0.0185945609077617 | negative regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
2 | GO:0010374 | 0.0203378560276401 | stomatal complex development | biological_process | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [PMID:17259259]
2 | GO:0044036 | 0.0214947266183613 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
2 | GO:0010087 | 0.0231294403496321 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
2 | GO:0009909 | 0.0240245026472483 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
2 | GO:0000912 | 0.0247175511693969 | assembly of actomyosin apparatus involved in cytokinesis | biological_process | The assembly and arrangement of an apparatus composed of actin, [NAME], and associated proteins that will function in cytokinesis. [GOC:mtg_cell_cycle]
2 | GO:0000914 | 0.0247175511693969 | phragmoplast assembly | biological_process | The formation of a structure composed of actin, [NAME], and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). [GOC:clt]
2 | GO:0007088 | 0.0247175511693969 | regulation of mitosis | biological_process | Any process that modulates the frequency, rate or extent of mitosis. [GOC:go_curators]
2 | GO:0007093 | 0.0247175511693969 | mitotic cell cycle checkpoint | biological_process | A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. [GOC:mtg_cell_cycle]
2 | GO:0010021 | 0.0247175511693969 | amylopectin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amylopectin, the (1->4) linked alpha glucose units with alpha-(1->6) linkages. [ISBN:[PHONE]]
2 | GO:0031032 | 0.0247175511693969 | actomyosin structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and [NAME] or paramyosin. The myosin may be organized into filaments. [GOC:dph, GOC:jl, GOC:mah]
2 | GO:1901991 | 0.0247175511693969 | negative regulation of mitotic cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
2 | GO:2000896 | 0.0247175511693969 | amylopectin metabolic process | biological_process | The chemical reactions and pathways involving an amylopectin. [GOC:mengo_curators]
2 | GO:0016093 | 0.0308033136501233 | [NAME] process | biological_process | The chemical reactions and pathways involving polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. [http://www.chem.qmul.ac.uk/iupac/misc/prenol.html#p2, ISBN:[PHONE]]
2 | GO:0016094 | 0.0308033136501233 | polyprenol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. [GOC:go_curators, http://www.chem.qmul.ac.uk/iupac/misc/prenol.html#p2]
2 | GO:0019348 | 0.0308033136501233 | dolichol metabolic process | biological_process | The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units. [ISBN:[PHONE]]
2 | GO:0019408 | 0.0308033136501233 | dolichol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units. [ISBN:[PHONE]]
2 | GO:0042547 | 0.0308033136501233 | cell wall modification involved in multidimensional cell growth | biological_process | The series of events resulting in chemical or structural changes to existing cell walls and contribute to multidimensional cell growth. [GOC:dph, GOC:jl, GOC:tb]
2 | GO:0051783 | 0.0308033136501233 | regulation of nuclear division | biological_process | Any process that modulates the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. [GOC:ai]
2 | GO:2000241 | 0.0343254373332627 | regulation of reproductive process | biological_process | Any process that modulates the frequency, rate or extent of reproductive process. [GOC:mah]
2 | GO:0010389 | 0.0343418786483647 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
2 | GO:0000086 | 0.0356960984707671 | G2/M transition of mitotic cell cycle | biological_process | The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex. [GOC:mtg_cell_cycle]
2 | GO:0000280 | 0.0384659461342005 | nuclear division | biological_process | The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. [GOC:mah]
2 | GO:0000075 | 0.0428640356940839 | cell cycle checkpoint | biological_process | A cell cycle process that controls cell cycle progression by monitoring the integrity of specific cell cycle events. A cell cycle checkpoint begins with detection of deficiencies or defects and ends with signal transduction. [GOC:mtg_cell_cycle]
2 | GO:1901988 | 0.0428640356940839 | negative regulation of cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
2 | GO:0010639 | 0.0488394323017252 | negative regulation of organelle organization | biological_process | Any process that decreases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:dph, GOC:tb]
2 | GO:0051129 | 0.0488394323017252 | negative regulation of cellular component organization | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:ai]
2 | GO:0048580 | 0.0495205148356001 | regulation of post-embryonic development | biological_process | Any process that modulates the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. [GOC:jid]
3 | GO:0000911 | 3.57106720268816e-22 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
3 | GO:0051567 | 1.41708623558079e-15 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
3 | GO:0006275 | 7.33173290855595e-14 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
3 | GO:0008283 | 1.09513735647556e-12 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
3 | GO:0048451 | 9.45204488248425e-12 | petal formation | biological_process | The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
3 | GO:0048453 | 9.45204488248425e-12 | sepal formation | biological_process | The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
3 | GO:0051225 | 9.45204488248425e-12 | spindle assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. [GOC:ai, GOC:expert_rg, GOC:mtg_sensu, GOC:tb]
3 | GO:0010389 | 3.50171251983789e-10 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
3 | GO:0016572 | 4.0306200900883e-09 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
3 | GO:0000280 | 2.06143363055159e-08 | nuclear division | biological_process | The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. [GOC:mah]
3 | GO:0000226 | 4.65226784101983e-08 | microtubule cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
3 | GO:0006306 | 2.20793038248887e-07 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
3 | GO:0042023 | 6.75498225325746e-07 | DNA endoreduplication | biological_process | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. [GOC:jl]
3 | GO:0006346 | 5.97339845476333e-05 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
3 | GO:0006342 | 7.81781541905436e-05 | chromatin silencing | biological_process | Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. [GOC:mah, PMID:10219245]
3 | GO:0007000 | 0.00010458975725161 | nucleolus organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus. [GOC:dph, GOC:jid, GOC:jl, GOC:mah]
3 | GO:0009909 | 0.000113243854830446 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
3 | GO:0006270 | 0.000208131656241277 | DNA replication initiation | biological_process | The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:[PHONE]]
3 | GO:0031048 | 0.000506872179777202 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
3 | GO:0010089 | 0.000873204425141536 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
3 | GO:0051128 | 0.00110604013999632 | regulation of cellular component organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:ai]
3 | GO:0051726 | 0.00189182599340591 | regulation of cell cycle | biological_process | Any process that modulates the rate or extent of progression through the cell cycle. [GOC:ai, GOC:dph, GOC:tb]
3 | GO:0042127 | 0.00304183112359687 | regulation of cell proliferation | biological_process | Any process that modulates the frequency, rate or extent of cell proliferation. [GOC:jl]
3 | GO:0022603 | 0.00431277760709125 | regulation of anatomical structure morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. [GOC:mah]
3 | GO:0052096 | 0.00639590661979537 | formation by symbiont of syncytium involving giant cell for nutrient acquisition from host | biological_process | The assembly by an organism of a syncytium, a nematode-induced multi-nucleate and physiologically active aggregation of fused root cells which exclusively provides the nematode with nourishment during its sedentary life, for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:pamgo_curators]
3 | GO:0030036 | 0.0102587873008645 | actin cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. [GOC:dph, GOC:jl, GOC:mah]
3 | GO:0007067 | 0.0117661188115068 | mitosis | biological_process | A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell. [GOC:dph, GOC:ma, GOC:mah, ISBN:[PHONE]]
3 | GO:0006086 | 0.012751921930046 | acetyl-CoA biosynthetic process from pyruvate | biological_process | The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. [GOC:dph, GOC:go_curators, GOC:tb]
3 | GO:0009652 | 0.012751921930046 | thigmotropism | biological_process | The movement of an organism, or part of an organism, such as leaves or tendrils, in response to a touch stimulus, usually toward or away from it. [GOC:jl, PMID:16153165]
3 | GO:0010342 | 0.012751921930046 | endosperm cellularization | biological_process | The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization. [PMID:12421698]
3 | GO:0018105 | 0.012751921930046 | peptidyl-serine phosphorylation | biological_process | The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037]
3 | GO:0018209 | 0.012751921930046 | peptidyl-serine modification | biological_process | The modification of peptidyl-serine. [GOC:go_curators]
3 | GO:0035404 | 0.012751921930046 | histone-serine phosphorylation | biological_process | The modification of histones by addition of a phosphate group to a serine residue. [GOC:bf]
3 | GO:0043987 | 0.012751921930046 | histone H3-S10 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone. [GOC:jl]
3 | GO:0080175 | 0.012751921930046 | phragmoplast microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in phragmoplast, a plant cell specific structure that forms during late cytokinesis. Phragmoplast serves as a scaffold for cell plate assembly and subsequent formation of a new cell wall separating the two daughter cells. [PMID:19383896]
3 | GO:0007091 | 0.0190682883924874 | metaphase/anaphase transition of mitotic cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the destruction of mitotic cyclins. [GOC:mtg_cell_cycle, PMID:10465783]
3 | GO:0007094 | 0.0190682883924874 | mitotic spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle, PMID:12360190]
3 | GO:0015840 | 0.0190682883924874 | urea transport | biological_process | The directed movement of urea into, out of or within the cell. [NAME] is the water-soluble compound H2N-CO-NH2. [GOC:ai, ISBN:[PHONE]]
3 | GO:0030071 | 0.0190682883924874 | regulation of mitotic metaphase/anaphase transition | biological_process | Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle. [GOC:mah]
3 | GO:0031577 | 0.0190682883924874 | spindle checkpoint | biological_process | A cell cycle checkpoint that delays progression through the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle. [GOC:mah, PMID:15897186]
3 | GO:0044784 | 0.0190682883924874 | metaphase/anaphase transition of cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase as part of the cell cycle. [GOC:mtg_cell_cycle]
3 | GO:0045839 | 0.0190682883924874 | negative regulation of mitosis | biological_process | Any process that stops, prevents or reduces the rate or extent of mitosis. Mitosis is the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother. [GOC:dph, GOC:go_curators, GOC:tb]
3 | GO:0045841 | 0.0190682883924874 | negative regulation of mitotic metaphase/anaphase transition | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the mitotic metaphase to anaphase transition. [GOC:go_curators]
3 | GO:0051784 | 0.0190682883924874 | negative regulation of nuclear division | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. [GOC:ai]
3 | GO:0071173 | 0.0190682883924874 | spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mah]
3 | GO:0071174 | 0.0190682883924874 | mitotic spindle checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, or that delays completion of anaphase until chromosomes are attached to the spindle. [GOC:mtg_cell_cycle]
3 | GO:0071918 | 0.0190682883924874 | [NAME] | biological_process | The process in which urea, the water-soluble compound H2N-CO-NH2, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
3 | GO:1902099 | 0.0190682883924874 | regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
3 | GO:1902100 | 0.0190682883924874 | negative regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
3 | GO:0033043 | 0.0194009478986313 | regulation of organelle organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:mah]
3 | GO:0030029 | 0.0199747483593487 | [NAME]-based process | biological_process | Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins. [GOC:mah]
3 | GO:0051510 | 0.0207765710081989 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
3 | GO:0022604 | 0.0219107580370844 | regulation of cell morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. [GOC:isa_complete]
3 | GO:0044036 | 0.0229844682091335 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
3 | GO:0000912 | 0.02534524703344 | assembly of actomyosin apparatus involved in cytokinesis | biological_process | The assembly and arrangement of an apparatus composed of actin, [NAME], and associated proteins that will function in cytokinesis. [GOC:mtg_cell_cycle]
3 | GO:0000914 | 0.02534524703344 | phragmoplast assembly | biological_process | The formation of a structure composed of actin, [NAME], and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). [GOC:clt]
3 | GO:0007088 | 0.02534524703344 | regulation of mitosis | biological_process | Any process that modulates the frequency, rate or extent of mitosis. [GOC:go_curators]
3 | GO:0007093 | 0.02534524703344 | mitotic cell cycle checkpoint | biological_process | A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. [GOC:mtg_cell_cycle]
3 | GO:0031032 | 0.02534524703344 | actomyosin structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and [NAME] or paramyosin. The myosin may be organized into filaments. [GOC:dph, GOC:jl, GOC:mah]
3 | GO:0046785 | 0.02534524703344 | microtubule polymerization | biological_process | The addition of tubulin heterodimers to one or both ends of a microtubule. [GOC:ai]
3 | GO:1901991 | 0.02534524703344 | negative regulation of mitotic cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
3 | GO:0001558 | 0.0266967574221325 | regulation of cell growth | biological_process | Any process that modulates the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
3 | GO:0030838 | 0.0292344531067061 | positive regulation of actin filament polymerization | biological_process | Any process that activates or increases the frequency, rate or extent of actin polymerization. [GOC:mah]
3 | [NAME] | 0.0292344531067061 | [NAME] nucleation | biological_process | The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament. [ISBN:[PHONE]]
3 | GO:0010583 | 0.0305382837949038 | response to cyclopentenone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. [PMID:18334669]
3 | GO:0031109 | 0.0315830374525073 | microtubule polymerization or depolymerization | biological_process | Assembly or disassembly of microtubules by the addition or removal of tubulin heterodimers from a microtubule. [GOC:mah]
3 | GO:0051783 | 0.0315830374525073 | regulation of nuclear division | biological_process | Any process that modulates the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. [GOC:ai]
3 | GO:0031334 | 0.0318649910732448 | positive regulation of protein complex assembly | biological_process | Any process that activates or increases the frequency, rate or extent of protein complex assembly. [GOC:mah]
3 | GO:0032273 | 0.0318649910732448 | positive regulation of protein polymerization | biological_process | Any process that activates or increases the frequency, rate or extent of the process of creating protein polymers. [GOC:mah]
3 | GO:0008064 | 0.0332142448730652 | regulation of actin polymerization or depolymerization | biological_process | Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. [GOC:mah]
3 | GO:0030041 | 0.0332142448730652 | actin filament polymerization | biological_process | Assembly of actin filaments by the addition of actin monomers to a filament. [GOC:mah]
3 | GO:0030832 | 0.0332142448730652 | regulation of actin filament length | biological_process | Any process that controls the length of actin filaments in a cell. [GOC:dph, GOC:mah]
3 | GO:0030833 | 0.0332142448730652 | regulation of actin filament polymerization | biological_process | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. [GOC:mah]
3 | GO:0032956 | 0.0332142448730652 | regulation of actin cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. [GOC:mah]
3 | [NAME] | 0.0332142448730652 | regulation of actin filament-based process | biological_process | Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the actin cytoskeleton. [GOC:mah]
3 | GO:0051495 | 0.0332142448730652 | positive regulation of cytoskeleton organization | biological_process | Any process that activates or increases the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:ai]
3 | GO:0008154 | 0.0359790872360362 | [NAME] polymerization or depolymerization | biological_process | Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. [GOC:mah]
3 | GO:0032271 | 0.0359790872360362 | regulation of protein polymerization | biological_process | Any process that modulates the frequency, rate or extent of the process of creating protein polymers. [GOC:mah]
3 | GO:0043254 | 0.0359790872360362 | regulation of protein complex assembly | biological_process | Any process that modulates the frequency, rate or extent of protein complex assembly. [GOC:jl]
3 | GO:0006084 | 0.037394031061994 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
3 | GO:0051258 | 0.037394031061994 | protein polymerization | biological_process | The process of creating protein polymers, compounds composed of a large number of component monomers; [NAME] may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. [GOC:ai]
3 | GO:0051493 | 0.037394031061994 | regulation of cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:ai]
3 | GO:0006637 | 0.0388302318864844 | acyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [ISBN:[PHONE]]
3 | GO:0035383 | 0.0388302318864844 | [NAME] process | biological_process | The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
3 | GO:0044087 | 0.0388302318864844 | regulation of cellular component biogenesis | biological_process | Any process that modulates the frequency, rate or extent of cellular component biogenesis, a process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. [GOC:jl]
3 | GO:0000278 | 0.0432779268130333 | mitotic cell cycle | biological_process | Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent. [GOC:mah, ISBN:[PHONE], Reactome:69278]
3 | GO:0000075 | 0.0439420649379119 | cell cycle checkpoint | biological_process | A cell cycle process that controls cell cycle progression by monitoring the integrity of specific cell cycle events. A cell cycle checkpoint begins with detection of deficiencies or defects and ends with signal transduction. [GOC:mtg_cell_cycle]
3 | GO:0007349 | 0.0439420649379119 | cellularization | biological_process | The separation of a multi-nucleate cell or syncytium into individual cells. An example of this is found in Drosophila melanogaster embryo development. [GOC:go_curators, GOC:mtg_sensu, ISBN:[PHONE]]
3 | GO:0009960 | 0.0439420649379119 | endosperm development | biological_process | The process whose specific outcome is the progression of the endosperm over time, from its formation to the mature structure. The endosperm is formed during fertilization and provides nutrients to the developing embryo. [GOC:sm]
3 | GO:1901988 | 0.0439420649379119 | negative regulation of cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
3 | GO:0048638 | 0.0450485206348764 | regulation of developmental growth | biological_process | Any process that modulates the frequency, rate or extent of developmental growth. [GOC:go_curators]
4 | GO:0000911 | 7.69925614566873e-22 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
4 | GO:0016572 | 2.34418547217907e-13 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
4 | GO:0051567 | 9.11588304121105e-13 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
4 | GO:0006275 | 2.8856038760202e-11 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
4 | GO:0051225 | 2.06323602543023e-09 | spindle assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. [GOC:ai, GOC:expert_rg, GOC:mtg_sensu, GOC:tb]
4 | GO:0010389 | 5.7647688752102e-08 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
4 | GO:0006306 | 8.10945621342717e-08 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
4 | GO:0031048 | 2.91287561224666e-07 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
4 | GO:0006346 | 7.08223815781245e-07 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
4 | GO:0009909 | 8.50859341503356e-07 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
4 | GO:0009957 | 1.05447563758684e-06 | epidermal cell fate specification | biological_process | The process in which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. [GOC:mtg_sensu, GOC:sm]
4 | GO:0042127 | 1.24691549917718e-06 | regulation of cell proliferation | biological_process | Any process that modulates the frequency, rate or extent of cell proliferation. [GOC:jl]
4 | GO:0000226 | 3.61583545272363e-06 | microtubule cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
4 | GO:0008283 | 7.75566275206136e-06 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
4 | GO:0048451 | 8.95917428583916e-05 | petal formation | biological_process | The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
4 | GO:0048453 | 8.95917428583916e-05 | sepal formation | biological_process | The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
4 | GO:0010583 | 0.000327943018518431 | response to cyclopentenone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. [PMID:18334669]
4 | GO:0000280 | 0.000587851059544724 | nuclear division | biological_process | The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. [GOC:mah]
4 | GO:0042023 | 0.000634226702333711 | DNA endoreduplication | biological_process | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. [GOC:jl]
4 | GO:0007349 | 0.00123171799920421 | cellularization | biological_process | The separation of a multi-nucleate cell or syncytium into individual cells. An example of this is found in Drosophila melanogaster embryo development. [GOC:go_curators, GOC:mtg_sensu, ISBN:[PHONE]]
4 | GO:0006342 | 0.00178347768750673 | chromatin silencing | biological_process | Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. [GOC:mah, PMID:10219245]
4 | GO:0051726 | 0.00466299474122441 | regulation of cell cycle | biological_process | Any process that modulates the rate or extent of progression through the cell cycle. [GOC:ai, GOC:dph, GOC:tb]
4 | GO:0006270 | 0.00498418448641716 | DNA replication initiation | biological_process | The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:[PHONE]]
4 | GO:0022603 | 0.0076313923009913 | regulation of anatomical structure morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. [GOC:mah]
4 | GO:0000712 | 0.00783498560927045 | resolution of meiotic recombination intermediates | biological_process | The cleavage and rejoining of intermediates, such as Holliday junctions, formed during meiotic recombination to produce two intact molecules in which genetic material has been exchanged. [GOC:elh, PMID:11733053]
4 | GO:0007142 | 0.00783498560927045 | male meiosis II | biological_process | A cell cycle process comprising the steps by which a cell progresses through male meiosis II, the second meiotic division in the male germline. [GOC:dph, GOC:mah]
4 | GO:0009971 | 0.00783498560927045 | anastral spindle assembly involved in male meiosis | biological_process | The aggregation, arrangement and bonding together of a set of components to form the anastral spindle in male meiotic cells. [GOC:tb, PMID:11973272]
4 | GO:0044774 | 0.00783498560927045 | mitotic DNA integrity checkpoint | biological_process | A mitotic cell cycle process that controls cell cycle progression in response to changes in DNA structure by monitoring the integrity of the DNA. The DNA integrity checkpoint begins with detection of DNA damage, defects in DNA structure or DNA replication, and ends with signal transduction. [GOC:mtg_cell_cycle]
4 | GO:0010440 | 0.00849385526804698 | stomatal lineage progression | biological_process | The process in which an unspecialized epidermal cell progresses through a series of divisions that culminate in the production of a stomatal complex. [GOC:[NAME], GOC:tb]
4 | GO:0000278 | 0.0152677686733098 | mitotic cell cycle | biological_process | Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent. [GOC:mah, ISBN:[PHONE], Reactome:69278]
4 | GO:0000819 | 0.0156098273980476 | sister chromatid segregation | biological_process | The cell cycle process in which sister chromatids are organized and then physically separated and apportioned to two or more sets. [GOC:ai, GOC:elh]
4 | GO:0009652 | 0.0156098273980476 | thigmotropism | biological_process | The movement of an organism, or part of an organism, such as leaves or tendrils, in response to a touch stimulus, usually toward or away from it. [GOC:jl, PMID:16153165]
4 | GO:0010342 | 0.0156098273980476 | endosperm cellularization | biological_process | The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization. [PMID:12421698]
4 | GO:0032456 | 0.0156098273980476 | endocytic recycling | biological_process | The directed movement of membrane-bounded vesicles from recycling endosomes back to the plasma membrane where they are recycled for further rounds of transport. [GOC:ecd, PMID:16473635]
4 | GO:0007067 | 0.0173387411569739 | mitosis | biological_process | A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell. [GOC:dph, GOC:ma, GOC:mah, ISBN:[PHONE]]
4 | GO:0030036 | 0.0177947780943381 | actin cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. [GOC:dph, GOC:jl, GOC:mah]
4 | GO:0010564 | 0.019856181322746 | regulation of cell cycle process | biological_process | Any process that modulates a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. [GOC:dph, GOC:tb]
4 | GO:0007091 | 0.0233249775032009 | metaphase/anaphase transition of mitotic cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the destruction of mitotic cyclins. [GOC:mtg_cell_cycle, PMID:10465783]
4 | GO:0007093 | 0.0233249775032009 | mitotic cell cycle checkpoint | biological_process | A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. [GOC:mtg_cell_cycle]
4 | GO:0007094 | 0.0233249775032009 | mitotic spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle, PMID:12360190]
4 | GO:0015840 | 0.0233249775032009 | urea transport | biological_process | The directed movement of urea into, out of or within the cell. [NAME] is the water-soluble compound H2N-CO-NH2. [GOC:ai, ISBN:[PHONE]]
4 | GO:0030071 | 0.0233249775032009 | regulation of mitotic metaphase/anaphase transition | biological_process | Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle. [GOC:mah]
4 | GO:0031577 | 0.0233249775032009 | spindle checkpoint | biological_process | A cell cycle checkpoint that delays progression through the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle. [GOC:mah, PMID:15897186]
4 | GO:0044784 | 0.0233249775032009 | metaphase/anaphase transition of cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase as part of the cell cycle. [GOC:mtg_cell_cycle]
4 | GO:0045839 | 0.0233249775032009 | negative regulation of mitosis | biological_process | Any process that stops, prevents or reduces the rate or extent of mitosis. Mitosis is the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother. [GOC:dph, GOC:go_curators, GOC:tb]
4 | GO:0045841 | 0.0233249775032009 | negative regulation of mitotic metaphase/anaphase transition | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the mitotic metaphase to anaphase transition. [GOC:go_curators]
4 | GO:0051784 | 0.0233249775032009 | negative regulation of nuclear division | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. [GOC:ai]
4 | GO:0071173 | 0.0233249775032009 | spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mah]
4 | GO:0071174 | 0.0233249775032009 | mitotic spindle checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, or that delays completion of anaphase until chromosomes are attached to the spindle. [GOC:mtg_cell_cycle]
4 | GO:0071918 | 0.0233249775032009 | [NAME] | biological_process | The process in which urea, the water-soluble compound H2N-CO-NH2, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
4 | GO:1901991 | 0.0233249775032009 | negative regulation of mitotic cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
4 | GO:1902099 | 0.0233249775032009 | regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
4 | GO:1902100 | 0.0233249775032009 | negative regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
4 | GO:0051510 | 0.0303599536952715 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
4 | GO:0000912 | 0.0309808847344919 | assembly of actomyosin apparatus involved in cytokinesis | biological_process | The assembly and arrangement of an apparatus composed of actin, [NAME], and associated proteins that will function in cytokinesis. [GOC:mtg_cell_cycle]
4 | GO:0000914 | 0.0309808847344919 | phragmoplast assembly | biological_process | The formation of a structure composed of actin, [NAME], and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). [GOC:clt]
4 | GO:0007088 | 0.0309808847344919 | regulation of mitosis | biological_process | Any process that modulates the frequency, rate or extent of mitosis. [GOC:go_curators]
4 | GO:0031032 | 0.0309808847344919 | actomyosin structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and [NAME] or paramyosin. The myosin may be organized into filaments. [GOC:dph, GOC:jl, GOC:mah]
4 | GO:0022604 | 0.0319875195717588 | regulation of cell morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. [GOC:isa_complete]
4 | GO:0030029 | 0.0339384040083167 | [NAME]-based process | biological_process | Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins. [GOC:mah]
4 | GO:0006265 | 0.0385779945983717 | DNA topological change | biological_process | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. [ISBN:071673706X, ISBN:[PHONE]]
4 | GO:0009558 | 0.0385779945983717 | embryo sac cellularization | biological_process | The process in which the eight-nucleate single celled female gametophyte develops into the seven-celled female gametophyte. This mature structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu, ISBN:047186840X]
4 | GO:0051783 | 0.0385779945983717 | regulation of nuclear division | biological_process | Any process that modulates the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. [GOC:ai]
4 | GO:0001558 | 0.0388302318866388 | regulation of cell growth | biological_process | Any process that modulates the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
4 | GO:0010498 | 0.0430319980726347 | proteasomal protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome. [GOC:tb]
4 | GO:0000075 | 0.0461167493213622 | cell cycle checkpoint | biological_process | A cell cycle process that controls cell cycle progression by monitoring the integrity of specific cell cycle events. A cell cycle checkpoint begins with detection of deficiencies or defects and ends with signal transduction. [GOC:mtg_cell_cycle]
4 | GO:1901988 | 0.0461167493213622 | negative regulation of cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
5 | GO:0000911 | 3.61893186799531e-12 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
5 | GO:0010389 | 4.7400688548908e-12 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
5 | GO:0051567 | 1.54380009954418e-09 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
5 | GO:0006275 | 1.75534196769135e-09 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
5 | GO:0008283 | 1.89994070939356e-09 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
5 | GO:0048451 | 6.13296782192842e-09 | petal formation | biological_process | The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
5 | GO:0048453 | 6.13296782192842e-09 | sepal formation | biological_process | The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
5 | GO:0016572 | 3.39867124767509e-08 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
5 | GO:0051225 | 2.17513137793151e-07 | spindle assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. [GOC:ai, GOC:expert_rg, GOC:mtg_sensu, GOC:tb]
5 | GO:0031048 | 6.58567861456372e-07 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
5 | GO:0009909 | 2.61154338265967e-06 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
5 | GO:0006306 | 2.64371949084991e-06 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
5 | GO:0000280 | 2.84765769583518e-06 | nuclear division | biological_process | The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. [GOC:mah]
5 | GO:0006270 | 9.33532945978149e-06 | DNA replication initiation | biological_process | The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:[PHONE]]
5 | GO:0006346 | 2.31275902403329e-05 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
5 | GO:0010342 | 7.594691612289e-05 | endosperm cellularization | biological_process | The separation of the multi-nucleate endosperm into individual cells. In many plant species, the endosperm that nurtures the embryo in the seed initially develops as a syncytium. This syncytial phase ends with simultaneous partitioning of the multi-nucleate cytoplasm into individual cells, a process referred to as cellularization. [PMID:12421698]
5 | GO:0051307 | 0.000226553100719343 | meiotic chromosome separation | biological_process | The process in which chromosomes are physically detached from each other during meiosis. [GOC:ai]
5 | GO:0000914 | 0.00045054697341225 | phragmoplast assembly | biological_process | The formation of a structure composed of actin, [NAME], and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). [GOC:clt]
5 | GO:0007088 | 0.00045054697341225 | regulation of mitosis | biological_process | Any process that modulates the frequency, rate or extent of mitosis. [GOC:go_curators]
5 | GO:0042023 | 0.000845912676303843 | DNA endoreduplication | biological_process | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. [GOC:jl]
5 | GO:0009960 | 0.0015503762665247 | endosperm development | biological_process | The process whose specific outcome is the progression of the endosperm over time, from its formation to the mature structure. The endosperm is formed during fertilization and provides nutrients to the developing embryo. [GOC:sm]
5 | GO:0051510 | 0.00345225953752317 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
5 | [NAME] | 0.00396984076349209 | regulation of DNA endoreduplication | biological_process | Any process that modulates the frequency, rate or extent of DNA endoreduplication. [GOC:mah]
5 | GO:0000226 | 0.00430190454548441 | microtubule cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
5 | [NAME] | 0.00473703043220853 | activation of protein kinase activity | biological_process | Any process that initiates the activity of an inactive protein kinase. [GOC:mah]
5 | GO:0010051 | 0.00505244489544649 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
5 | GO:0007000 | 0.007409962023881 | nucleolus organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus. [GOC:dph, GOC:jid, GOC:jl, GOC:mah]
5 | GO:0048519 | 0.00771038113308667 | negative regulation of biological process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. [GOC:jid]
5 | [NAME] | 0.00879437160220679 | mitotic chromosome condensation | biological_process | The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells. [GOC:mah, ISBN:[PHONE]]
5 | GO:0007113 | 0.00879437160220679 | endomitotic cell cycle | biological_process | A mitotic cell cycle in which chromosomes are replicated and sister chromatids separate, but spindle formation, nuclear membrane breakdown and nuclear division do not occur, resulting in an increased number of chromosomes in the cell. [GOC:curators, GOC:dos, GOC:expert_vm]
5 | GO:0010425 | 0.00879437160220679 | DNA methylation on cytosine within a CNG sequence | biological_process | The covalent transfer of a methyl group, to C-5 or N-4, of a cytosine located within a CNG sequence in a DNA molecule. N stands for any nucleotide. [GOC:dph, GOC:tb, [NAME]]
5 | GO:0045876 | 0.00879437160220679 | positive regulation of sister chromatid cohesion | biological_process | Any process that activates or increases the frequency, rate or extent of sister chromatid cohesion. [GOC:go_curators]
5 | GO:0046938 | 0.00879437160220679 | phytochelatin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11. [ISBN:[PHONE]]
5 | GO:0006865 | 0.011252282358967 | amino acid transport | biological_process | The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
5 | GO:0051302 | 0.0143289793772859 | regulation of cell division | biological_process | Any process that modulates the frequency, rate or extent of the physical partitioning and separation of a cell into daughter cells. [GOC:go_curators]
5 | GO:0071705 | 0.0143339809364837 | nitrogen compound transport | biological_process | The directed movement of nitrogen-containing compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:51143, GOC:mah]
5 | GO:0007067 | 0.0170707117703611 | mitosis | biological_process | A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell. [GOC:dph, GOC:ma, GOC:mah, ISBN:[PHONE]]
5 | GO:0010069 | 0.0175127962881896 | zygote asymmetric cytokinesis in embryo sac | biological_process | The division of the zygote in a plane perpendicular to the long axis of the embryo sac to produce a larger basal cell near the micropyle and a small terminal cell close to what was the central cell and is now the developing endosperm. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb, ISBN:[PHONE]]
5 | GO:0010070 | 0.0175127962881896 | zygote asymmetric cell division | biological_process | The division of the zygote into two daughter cells that will adopt developmentally distinct potentials. [GOC:tb]
5 | GO:0010588 | 0.0175127962881896 | cotyledon vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants. [PMID:10559439]
5 | GO:0015700 | 0.0175127962881896 | arsenite transport | biological_process | The directed movement of arsenite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
5 | GO:0016145 | 0.0175127962881896 | S-glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
5 | GO:0019759 | 0.0175127962881896 | glycosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
5 | GO:0019762 | 0.0175127962881896 | glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
5 | GO:0042344 | 0.0175127962881896 | indole glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [http://www.onelook.com]
5 | GO:0080175 | 0.0175127962881896 | phragmoplast microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in phragmoplast, a plant cell specific structure that forms during late cytokinesis. Phragmoplast serves as a scaffold for cell plate assembly and subsequent formation of a new cell wall separating the two daughter cells. [PMID:19383896]
5 | GO:0009409 | 0.0183922977268603 | response to cold | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr]
5 | GO:0044767 | 0.0196130304388659 | single-organism developmental process | biological_process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. [GOC:jl]
5 | GO:0015849 | 0.0196130628078306 | organic acid transport | biological_process | The directed movement of organic acids, any acidic compound containing carbon in covalent linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [ISBN:[PHONE]]
5 | GO:0046942 | 0.0196130628078306 | [NAME] | biological_process | The directed movement of carboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-). [GOC:ai]
5 | GO:0010090 | 0.0199367317822481 | trichome morphogenesis | biological_process | The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
5 | GO:0010026 | 0.0241497820501775 | trichome differentiation | biological_process | The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, PMID:9367433]
5 | GO:0000186 | 0.0261559178820255 | activation of MAPKK activity | biological_process | The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK). [PMID:9561267]
5 | GO:0007091 | 0.0261559178820255 | metaphase/anaphase transition of mitotic cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase during mitosis, triggered by the destruction of mitotic cyclins. [GOC:mtg_cell_cycle, PMID:10465783]
5 | GO:0007094 | 0.0261559178820255 | mitotic spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mtg_cell_cycle, PMID:12360190]
5 | GO:0015822 | 0.0261559178820255 | ornithine transport | biological_process | The directed movement of ornithine, 2,5-diaminopentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
5 | GO:0015840 | 0.0261559178820255 | urea transport | biological_process | The directed movement of urea into, out of or within the cell. [NAME] is the water-soluble compound H2N-CO-NH2. [GOC:ai, ISBN:[PHONE]]
5 | GO:0030071 | 0.0261559178820255 | regulation of mitotic metaphase/anaphase transition | biological_process | Any process that modulates the frequency, rate or extent of the onset of anaphase (chromosome movement) in the mitotic cell cycle. [GOC:mah]
5 | GO:0031577 | 0.0261559178820255 | spindle checkpoint | biological_process | A cell cycle checkpoint that delays progression through the metaphase/anaphase transition until the spindle is correctly assembled and oriented, and chromosomes are attached to the spindle. [GOC:mah, PMID:15897186]
5 | GO:0042343 | 0.0261559178820255 | indole glucosinolate metabolic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates. Glucosinolates are sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan; indoles are biologically active substances based on 2,3-benzopyrrole, formed during the catabolism of tryptophan. [http://www.onelook.com/]
5 | GO:0044784 | 0.0261559178820255 | metaphase/anaphase transition of cell cycle | biological_process | The cell cycle process in which a cell progresses from metaphase to anaphase as part of the cell cycle. [GOC:mtg_cell_cycle]
5 | GO:0045839 | 0.0261559178820255 | negative regulation of mitosis | biological_process | Any process that stops, prevents or reduces the rate or extent of mitosis. Mitosis is the division of the eukaryotic cell nucleus to produce two daughter nuclei that, usually, contain the identical chromosome complement to their mother. [GOC:dph, GOC:go_curators, GOC:tb]
5 | GO:0045841 | 0.0261559178820255 | negative regulation of mitotic metaphase/anaphase transition | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the mitotic metaphase to anaphase transition. [GOC:go_curators]
5 | GO:0051784 | 0.0261559178820255 | negative regulation of nuclear division | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of nuclear division, the partitioning of the nucleus and its genetic information. [GOC:ai]
5 | GO:0071173 | 0.0261559178820255 | spindle assembly checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition until the spindle is correctly assembled and chromosomes are attached to the spindle. [GOC:mah]
5 | GO:0071174 | 0.0261559178820255 | mitotic spindle checkpoint | biological_process | A cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and oriented, or that delays completion of anaphase until chromosomes are attached to the spindle. [GOC:mtg_cell_cycle]
5 | GO:0071918 | 0.0261559178820255 | [NAME] | biological_process | The process in which urea, the water-soluble compound H2N-CO-NH2, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
5 | GO:0080170 | 0.0261559178820255 | hydrogen peroxide transmembrane transport | biological_process | The process in which hydrogen peroxide is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute. [GOC:tb]
5 | GO:1902099 | 0.0261559178820255 | regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that modulates the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
5 | GO:1902100 | 0.0261559178820255 | negative regulation of metaphase/anaphase transition of cell cycle | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of metaphase/anaphase transition of cell cycle. [GOC:mtg_cell_cycle, GOC:TermGenie]
5 | GO:2000123 | 0.0261559178820255 | positive regulation of stomatal complex development | biological_process | Any process that activates or increases the frequency, rate or extent of stomatal complex development. [GOC:obol]
5 | GO:0003333 | 0.0264910428819644 | amino acid transmembrane transport | biological_process | The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb]
5 | GO:0009886 | 0.0276166327387434 | post-embryonic morphogenesis | biological_process | The process, occurring after embryonic development, by which anatomical structures are generated and organized. [GOC:go_curators]
5 | GO:0000165 | 0.0307973903338906 | MAPK cascade | biological_process | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP [NAME]-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
5 | GO:0007243 | 0.0307973903338906 | intracellular protein kinase cascade | biological_process | A series of reactions in which a signal is passed on to downstream proteins within the cell by sequential protein phosphorylation and activation of the cascade components. [GOC:bf, GOC:jl, GOC:signaling]
5 | GO:0015711 | 0.0310496067030596 | organic anion transport | biological_process | The directed movement of organic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic anions are atoms or small molecules with a negative charge which contain carbon in covalent linkage. [GOC:ai, GOC:krc]
5 | GO:0048439 | 0.0318270447447269 | flower morphogenesis | biological_process | The process in which the anatomical structures of the flower are generated and organized. [GOC:go_curators]
5 | GO:0007093 | 0.0347243748517215 | mitotic cell cycle checkpoint | biological_process | A cell cycle checkpoint that ensures accurate chromosome replication and segregation by preventing progression through a mitotic cell cycle until conditions are suitable for the cell to proceed to the next stage. [GOC:mtg_cell_cycle]
5 | GO:0009831 | 0.0347243748517215 | plant-type cell wall modification involved in multidimensional cell growth | biological_process | The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
5 | GO:0019755 | 0.0347243748517215 | one-carbon compound transport | biological_process | The directed movement of one-carbon compounds into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
5 | GO:0040020 | 0.0347243748517215 | regulation of meiosis | biological_process | Any process that modulates the frequency, rate or extent of meiosis, the process in which the nucleus of a diploid cell divides twice forming four haploid cells, one or more of which usually function as gametes. [GOC:ems, GOC:ma]
5 | GO:1901991 | 0.0347243748517215 | negative regulation of mitotic cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of mitotic cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
5 | GO:0009595 | 0.0355996952679977 | detection of biotic stimulus | biological_process | The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal. [GOC:hb]
5 | GO:0009624 | 0.0355996952679977 | response to nematode | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode. [GOC:hb]
5 | GO:0042886 | 0.0355996952679977 | amide transport | biological_process | The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl, ISBN:[PHONE]]
5 | GO:0009793 | 0.0430973017606742 | embryo development ending in seed dormancy | biological_process | The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]
5 | GO:0005986 | 0.0432188003529937 | sucrose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
5 | GO:0007205 | 0.0432188003529937 | protein kinase C-activating G-protein coupled receptor signaling pathway | biological_process | The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of protein kinase C (PKC). PKC is activated by second messengers including diacylglycerol (DAG). [GOC:mah, GOC:signaling]
5 | [NAME] | 0.0432188003529937 | specification of organ identity | biological_process | The regionalization process in which the identity of an organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. [GOC:tair_curators]
5 | [NAME] | 0.0432188003529937 | specification of floral organ identity | biological_process | The process in which the identity of a floral organ primordium is specified. Identity is considered to be the aggregate of characteristics by which a structure is recognized. [GOC:tb]
5 | GO:0010337 | 0.0432188003529937 | regulation of salicylic acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving salicylic acid. [PMID:14765119]
5 | GO:0019253 | 0.0432188003529937 | reductive pentose-phosphate cycle | biological_process | The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate. [ISBN:[PHONE]]
5 | GO:0019685 | 0.0432188003529937 | photosynthesis, dark reaction | biological_process | A complex cycle of enzyme-mediated reactions which catalyzes the reduction of carbon dioxide to sugar. As well as carbon dioxide the cycle requires reducing power in the form of reduced nicotinamide adenine dinucleotide phosphate (NADP) and chemical energy in the form of adenosine triphosphate (ATP). The reduced NADP (NADPH) and ATP are produced by the 'light' reactions. [ISBN:[PHONE]]
5 | GO:0042547 | 0.0432188003529937 | cell wall modification involved in multidimensional cell growth | biological_process | The series of events resulting in chemical or structural changes to existing cell walls and contribute to multidimensional cell growth. [GOC:dph, GOC:jl, GOC:tb]
5 | GO:0044273 | 0.0432188003529937 | sulfur compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:jl]
5 | GO:1990051 | 0.0432188003529937 | activation of protein kinase C activity | biological_process | Any process that initiates the activity of the inactive enzyme protein kinase C. [PMID:3156004]
5 | GO:0035556 | 0.04666118572023 | intracellular signal transduction | biological_process | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:signaling, ISBN:[PHONE]]
5 | GO:0010374 | 0.0492259812744383 | stomatal complex development | biological_process | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [PMID:17259259]
6 | GO:0010389 | 2.25171105824367e-10 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
6 | GO:0051567 | 4.88746637165456e-10 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
6 | GO:0006275 | 1.21593115256424e-09 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
6 | GO:0006306 | 7.48803861594611e-09 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
6 | GO:0000911 | 1.04813968297886e-08 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
6 | GO:0008283 | 8.48976993180557e-08 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
6 | GO:0000280 | 1.09549896283078e-05 | nuclear division | biological_process | The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. [GOC:mah]
6 | GO:0006346 | 4.30587540018977e-05 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
6 | GO:0016572 | 9.0554815014719e-05 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
6 | GO:0042023 | 0.000236042189503461 | DNA endoreduplication | biological_process | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. [GOC:jl]
6 | GO:0031048 | 0.000415187419744707 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
6 | GO:0009909 | 0.000632161387836968 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
6 | GO:0051225 | 0.000750420248908003 | spindle assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. [GOC:ai, GOC:expert_rg, GOC:mtg_sensu, GOC:tb]
6 | GO:0048451 | 0.000827348469822099 | petal formation | biological_process | The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
6 | GO:0048453 | 0.000827348469822099 | sepal formation | biological_process | The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
6 | GO:0031047 | 0.0013593496988329 | gene silencing by RNA | biological_process | Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054]
6 | GO:0042127 | 0.00262404358767885 | regulation of cell proliferation | biological_process | Any process that modulates the frequency, rate or extent of cell proliferation. [GOC:jl]
6 | GO:0016444 | 0.00312446905685843 | somatic cell DNA recombination | biological_process | Recombination occurring within or between DNA molecules in somatic cells. [GOC:ma]
6 | GO:0007000 | 0.00359137790346303 | nucleolus organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus. [GOC:dph, GOC:jid, GOC:jl, GOC:mah]
6 | GO:0022603 | 0.00372569510075324 | regulation of anatomical structure morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. [GOC:mah]
6 | GO:0006342 | 0.00479470425248647 | chromatin silencing | biological_process | Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. [GOC:mah, PMID:10219245]
6 | GO:0007050 | 0.00607611128879482 | cell cycle arrest | biological_process | A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M). [GOC:dph, GOC:mah, GOC:tb]
6 | GO:0009971 | 0.00607611128879482 | anastral spindle assembly involved in male meiosis | biological_process | The aggregation, arrangement and bonding together of a set of components to form the anastral spindle in male meiotic cells. [GOC:tb, PMID:11973272]
6 | GO:0031508 | 0.00607611128879482 | centromeric heterochromatin assembly | biological_process | The assembly of chromatin into heterochromatin near the centromere. [GOC:mah]
6 | GO:0090309 | 0.00607611128879482 | positive regulation of methylation-dependent chromatin silencing | biological_process | Any process that increases the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:BHF]
6 | GO:0000724 | 0.00839286888666236 | double-strand break repair via homologous recombination | biological_process | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. [GOC:elh, PMID:10357855]
6 | [NAME] | 0.011913546227192 | RNA interference | biological_process | The process in which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and can occur through a specific decrease in the level of mRNA, or by negative regulation of translation, of both host genes and transgenes. [GOC:ems, PMID:11201747, PMID:11713190, PMID:18771919]
6 | GO:0000076 | 0.0121162692563001 | DNA replication checkpoint | biological_process | A cell cycle checkpoint that prevents the initiation of nuclear division until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome. [GOC:curators, GOC:rn, PMID:11728327, PMID:12537518]
6 | GO:0010424 | 0.0121162692563001 | DNA methylation on cytosine within a CG sequence | biological_process | The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule. [GOC:dph, GOC:tb, [NAME]]
6 | GO:0007267 | 0.0140504548876013 | cell-cell signaling | biological_process | Any process that mediates the transfer of information from one cell to another. [GOC:mah]
6 | [NAME] | 0.014513951935292 | posttranscriptional gene silencing by RNA | biological_process | Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]
6 | GO:0016441 | 0.0164132782166926 | posttranscriptional gene silencing | biological_process | The inactivation of gene expression by a posttranscriptional mechanism. [GOC:mah, PMID:15020054]
6 | GO:0032776 | 0.0181206809276089 | DNA methylation on cytosine | biological_process | The covalent transfer of a methyl group to C-5 or N-4 of cytosine in a DNA molecule. [GOC:pf]
6 | GO:0051510 | 0.0188564255738972 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
6 | GO:0022604 | 0.0198899239366477 | regulation of cell morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. [GOC:isa_complete]
6 | GO:0009616 | 0.0209467962779042 | virus induced gene silencing | biological_process | Specific posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes. This silencing is triggered by viral infection, and occurs through a specific decrease in the level of mRNA of both host and viral genes. [GOC:jl]
6 | GO:0052018 | 0.0209467962779042 | modulation by symbiont of RNA levels in host | biological_process | The alteration by an organism of the levels of RNA in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
6 | [NAME] | 0.0209467962779042 | modulation of RNA levels in other organism involved in symbiotic interaction | biological_process | The alteration by an organism of the levels of RNA in a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
6 | GO:0010087 | 0.0220267362892457 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
6 | GO:0031570 | 0.0240895521682855 | DNA integrity checkpoint | biological_process | A cell cycle process that controls cell cycle progression in response to changes in DNA structure by monitoring the integrity of the DNA. The DNA integrity checkpoint begins with detection of DNA damage, defects in DNA structure or DNA replication, and progresses through signal transduction and ends with cell cycle effector processes. [GOC:mtg_cell_cycle]
6 | GO:0001558 | 0.0242546075054642 | regulation of cell growth | biological_process | Any process that modulates the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
6 | GO:0010051 | 0.0242546075054642 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
6 | GO:0035821 | 0.0242546075054642 | modification of morphology or physiology of other organism | biological_process | The process in which an organism effects a change in the structure or processes of a second organism. [GOC:bf]
6 | GO:0044003 | 0.0242546075054642 | modification by symbiont of host morphology or physiology | biological_process | The process in which an organism effects a change in the structure or processes of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:cc]
6 | GO:0045859 | 0.0242546075054642 | regulation of protein kinase activity | biological_process | Any process that modulates the frequency, rate or extent of protein kinase activity. [GOC:go_curators]
6 | GO:0051817 | 0.0242546075054642 | modification of morphology or physiology of other organism involved in symbiotic interaction | biological_process | The process in which an organism effects a change in the structure or processes of a second organism, where the two organisms are in a symbiotic interaction. [GOC:cc]
6 | GO:0044700 | 0.0247207375136332 | single organism signaling | biological_process | A signaling process occurring within a single organism. [GOC:jl]
6 | GO:0023052 | 0.0249438176780129 | signaling | biological_process | The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling]
6 | GO:0001932 | 0.0254019394504546 | regulation of protein phosphorylation | biological_process | Any process that modulates the frequency, rate or extent of addition of phosphate groups into an amino acid in a protein. [GOC:hjd]
6 | GO:0010267 | 0.0254019394504546 | production of ta-siRNAs involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs. [GOC:tb, PMID:16129836]
6 | GO:0043549 | 0.0254019394504546 | regulation of kinase activity | biological_process | Any process that modulates the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [GOC:bf]
6 | GO:0009555 | 0.0272750202736955 | pollen development | biological_process | The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb]
6 | GO:0042325 | 0.0302070405623523 | regulation of phosphorylation | biological_process | Any process that modulates the frequency, rate or extent of addition of phosphate groups into a molecule. [GOC:jl]
6 | GO:0051338 | 0.0302070405623523 | regulation of transferase activity | biological_process | Any process that modulates the frequency, rate or extent of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. [EC:2.-.-.-, GOC:ai]
6 | GO:0044403 | 0.0314608131521099 | symbiosis, encompassing mutualism through parasitism | biological_process | An interaction between two organisms living together in more or less intimate association. The term host is usually used for the larger (macro) of the two members of a symbiosis. The smaller (micro) member is called the symbiont organism. Microscopic symbionts are often referred to as endosymbionts. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. [GOC:cc, http://www.free-definition.com]
6 | GO:0051701 | 0.0314608131521099 | interaction with host | biological_process | An interaction between two organisms living together in more or less intimate association. The term host is used for the larger (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism. [GOC:cc]
6 | GO:0009886 | 0.0315647297094804 | post-embryonic morphogenesis | biological_process | The process, occurring after embryonic development, by which anatomical structures are generated and organized. [GOC:go_curators]
6 | GO:0044419 | 0.0327350151978701 | interspecies interaction between organisms | biological_process | Any process in which an organism has an effect on an organism of a different species. [GOC:cc]
6 | GO:0035196 | 0.0366774073423435 | production of miRNAs involved in gene silencing by miRNA | biological_process | Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein. [GOC:dph, GOC:tb, PMID:15066275, PMID:15066283]
6 | GO:0010608 | 0.0380042541655402 | posttranscriptional regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript. [GOC:dph, GOC:tb]
6 | GO:0030422 | 0.0407937217601396 | production of siRNA involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. [GOC:mah, PMID:11524674]
6 | GO:0000075 | 0.0417849647084148 | cell cycle checkpoint | biological_process | A cell cycle process that controls cell cycle progression by monitoring the integrity of specific cell cycle events. A cell cycle checkpoint begins with detection of deficiencies or defects and ends with signal transduction. [GOC:mtg_cell_cycle]
6 | GO:0010492 | 0.0417849647084148 | maintenance of shoot apical meristem identity | biological_process | The process in which an organism retains a population of shoot apical meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:dph, GOC:tb, PMID:17461786]
6 | GO:1901988 | 0.0417849647084148 | negative regulation of cell cycle phase transition | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
6 | GO:0031050 | 0.0436309728175859 | dsRNA fragmentation | biological_process | Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function. [GOC:ns]
6 | GO:0035195 | 0.0436309728175859 | gene silencing by miRNA | biological_process | Downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [PMID:14744438, PMID:15066275, PMID:15066283]
6 | GO:0043331 | 0.0436309728175859 | response to dsRNA | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. [GOC:jl]
6 | GO:0070918 | 0.0436309728175859 | production of small RNA involved in gene silencing by RNA | biological_process | The process in which a double-stranded RNA precursor is processed into short (20-30 nt) fragments. [NAME] cleavage is catalyzed by a Dicer endonuclease. [GOC:mah, PMID:19239886]
6 | GO:0071359 | 0.0436309728175859 | cellular response to dsRNA | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. [GOC:mah]
6 | GO:0051607 | 0.0465402054727038 | defense response to virus | biological_process | Reactions triggered in response to the presence of a virus that act to protect the cell or organism. [GOC:ai]
7 | GO:0019458 | 0.00783498560927045 | [NAME] process via 2-oxobutanoate | biological_process | The chemical reactions and pathways resulting in the breakdown of methionine, via the intermediate 2-oxobutanoate. [GOC:go_curators]
7 | GO:0019593 | 0.00783498560927045 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
7 | GO:0032197 | 0.00783498560927045 | transposition, RNA-mediated | biological_process | Any process involved in a type of transpositional recombination which occurs via an RNA intermediate. [GOC:jp, ISBN:[PHONE]]
7 | GO:0090241 | 0.00783498560927045 | negative regulation of histone H4 acetylation | biological_process | Any process that decreases the rate, frequency, or extent of histone H4 acetylation, the modification of histone H4 by the addition of an acetyl group. [GOC:dph, GOC:tb]
7 | GO:0048443 | 0.014050653860805 | stamen development | biological_process | The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure. [GOC:go_curators]
7 | GO:0048466 | 0.014050653860805 | androecium development | biological_process | The process whose specific outcome is the progression of the androecium over time, from its formation to the mature structure. [GOC:go_curators]
7 | GO:0006346 | 0.0152428723755516 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
7 | GO:0006344 | 0.0156098273980476 | maintenance of chromatin silencing | biological_process | The maintenance of chromatin in a transcriptionally silent state such as heterochromatin. [GOC:mah]
7 | GO:0010588 | 0.0156098273980476 | cotyledon vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants. [PMID:10559439]
7 | GO:0015692 | 0.0156098273980476 | lead ion transport | biological_process | The directed movement of lead (Pb) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
7 | GO:0051289 | 0.0156098273980476 | protein homotetramerization | biological_process | The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits. [GOC:go_curators]
7 | GO:0051574 | 0.0156098273980476 | positive regulation of histone H3-K9 methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
7 | GO:0071421 | 0.0156098273980476 | manganese ion transmembrane transport | biological_process | A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
7 | GO:0080086 | 0.0156098273980476 | stamen filament development | biological_process | The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen. [PMID:19139039, PO:0009067]
7 | GO:0080175 | 0.0156098273980476 | phragmoplast microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in phragmoplast, a plant cell specific structure that forms during late cytokinesis. Phragmoplast serves as a scaffold for cell plate assembly and subsequent formation of a new cell wall separating the two daughter cells. [PMID:19383896]
7 | GO:2000379 | 0.0156098273980476 | positive regulation of reactive oxygen species metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
7 | GO:0006828 | 0.0233249775032009 | manganese ion transport | biological_process | The directed movement of manganese (Mn) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
7 | GO:0009970 | 0.0233249775032009 | cellular response to sulfate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate. [GOC:sm]
7 | GO:0031058 | 0.0233249775032009 | positive regulation of histone modification | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent alteration of a histone. [GOC:mah]
7 | GO:0031062 | 0.0233249775032009 | positive regulation of histone methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones. [GOC:mah]
7 | GO:0051262 | 0.0233249775032009 | protein tetramerization | biological_process | The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits. [GOC:ecd]
7 | GO:0051570 | 0.0233249775032009 | regulation of histone H3-K9 methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
7 | GO:0008283 | 0.0234089402495423 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
7 | [NAME] | 0.0235742374812538 | RNA interference | biological_process | The process in which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and can occur through a specific decrease in the level of mRNA, or by negative regulation of translation, of both host genes and transgenes. [GOC:ems, PMID:11201747, PMID:11713190, PMID:18771919]
7 | GO:0015996 | 0.0256865200962553 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
7 | [NAME] | 0.0256865200962553 | pigment catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
7 | GO:0009267 | 0.0268032941699879 | cellular response to starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment. [GOC:jl]
7 | GO:0006787 | 0.0272088291599416 | porphyrin-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
7 | GO:0033015 | 0.0272088291599416 | tetrapyrrole catabolic process | biological_process | The chemical reactions and pathways leading to the breakdown of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
7 | GO:0051187 | 0.0272088291599416 | cofactor catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a cofactor, a substance that is required for the activity of an enzyme or other protein. [GOC:ai]
7 | [NAME] | 0.0285026194127963 | posttranscriptional gene silencing by RNA | biological_process | Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]
7 | GO:0042594 | 0.0285026194127963 | response to starvation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment. [GOC:go_curators]
7 | GO:0072593 | 0.0286169149177046 | reactive oxygen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah]
7 | GO:0051704 | 0.0289692719427299 | multi-organism process | biological_process | A biological process which involves another organism of the same or different species. [GOC:jl]
7 | GO:0009620 | 0.0304952675012323 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
7 | GO:0000912 | 0.0309808847344919 | assembly of actomyosin apparatus involved in cytokinesis | biological_process | The assembly and arrangement of an apparatus composed of actin, [NAME], and associated proteins that will function in cytokinesis. [GOC:mtg_cell_cycle]
7 | GO:0000914 | 0.0309808847344919 | phragmoplast assembly | biological_process | The formation of a structure composed of actin, [NAME], and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). [GOC:clt]
7 | GO:0031032 | 0.0309808847344919 | actomyosin structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and [NAME] or paramyosin. The myosin may be organized into filaments. [GOC:dph, GOC:jl, GOC:mah]
7 | GO:0031060 | 0.0309808847344919 | regulation of histone methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones. [GOC:mah]
7 | GO:0031669 | 0.0311573215391453 | cellular response to nutrient levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. [GOC:mah]
7 | GO:0016441 | 0.0320703379479556 | posttranscriptional gene silencing | biological_process | The inactivation of gene expression by a posttranscriptional mechanism. [GOC:mah, PMID:15020054]
7 | GO:0009414 | 0.0337859617704075 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
7 | GO:0009607 | 0.0341816167033014 | response to biotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb]
7 | GO:0051707 | 0.0341816167033014 | response to other organism | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism. [GOC:ai]
7 | GO:0009415 | 0.0344682360753103 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
7 | GO:0045892 | 0.0358570083649704 | negative regulation of transcription, DNA-dependent | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
7 | GO:0051253 | 0.0358570083649704 | negative regulation of RNA metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
7 | GO:0031667 | 0.0358623285065948 | response to nutrient levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. [GOC:mah]
7 | GO:0007010 | 0.0362797823381466 | cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah]
7 | GO:0005986 | 0.0385779945983717 | sucrose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
7 | [NAME] | 0.0385779945983717 | regulation of gene expression by genetic imprinting | biological_process | Heritable alterations in the activity of a gene that depend on whether it passed through the paternal or the maternal germline, but that are not encoded by DNA itself. [GOC:ems, ISBN:[PHONE], PMID:11498578]
7 | GO:0006730 | 0.0385779945983717 | one-carbon metabolic process | biological_process | The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states. [GOC:hjd, GOC:mah, GOC:pde]
7 | GO:0010325 | 0.0385779945983717 | raffinose family oligosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization). [GOC:tair_curators]
7 | GO:0015691 | 0.0385779945983717 | cadmium ion transport | biological_process | The directed movement of cadmium (Cd) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
7 | GO:0016093 | 0.0385779945983717 | [NAME] process | biological_process | The chemical reactions and pathways involving polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. [http://www.chem.qmul.ac.uk/iupac/misc/prenol.html#p2, ISBN:[PHONE]]
7 | GO:0016094 | 0.0385779945983717 | polyprenol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of polyprenols, prenols with more than 4 isoprenoid residues, which may be all-trans, or a mixture of cis and trans. [GOC:go_curators, http://www.chem.qmul.ac.uk/iupac/misc/prenol.html#p2]
7 | GO:0019348 | 0.0385779945983717 | dolichol metabolic process | biological_process | The chemical reactions and pathways involving dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units. [ISBN:[PHONE]]
7 | GO:0019408 | 0.0385779945983717 | dolichol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of dolichols, any 2,3-dihydropolyprenol derived from four or more linked isoprene units. [ISBN:[PHONE]]
7 | GO:0051260 | 0.0385779945983717 | protein homooligomerization | biological_process | The process of creating protein oligomers, compounds composed of a small number, usually between three and ten, of identical component monomers. Oligomers may be formed by the polymerization of a number of monomers or the depolymerization of a large protein polymer. [GOC:ai]
7 | GO:0071514 | 0.0385779945983717 | genetic imprinting | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules by a mechanism that is mediated by DNA, is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence. [GOC:mah, GOC:vw]
7 | GO:2001252 | 0.0385779945983717 | positive regulation of chromosome organization | biological_process | Any process that activates or increases the frequency, rate or extent of chromosome organization. [GOC:obol]
7 | GO:0045934 | 0.0387316889110201 | negative regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
7 | GO:0048438 | 0.0387316889110201 | floral whorl development | biological_process | The process whose specific outcome is the progression of a floral whorl over time, from its formation to the mature structure. A floral whorl is a circular arrangement of parts of a flower arising from a stem of a plant. [GOC:dph, GOC:go_curators, GOC:PO_curators, GOC:tb, PO:0025023]
7 | GO:0044036 | 0.0388523867748415 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
7 | GO:0010558 | 0.0402177065005091 | negative regulation of macromolecule biosynthetic process | biological_process | Any process that decreases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
7 | GO:0051172 | 0.0402177065005091 | negative regulation of nitrogen compound metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
7 | GO:2000113 | 0.0402177065005091 | negative regulation of cellular macromolecule biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular macromolecule biosynthetic process. [GOC:obol]
7 | GO:0031327 | 0.0440750018758225 | negative regulation of cellular biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
7 | GO:0009890 | 0.0448708629115129 | negative regulation of biosynthetic process | biological_process | Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
7 | GO:0031668 | 0.0452036858614302 | cellular response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:mah]
7 | GO:0044030 | 0.0461167493213622 | regulation of DNA methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:jl]
7 | GO:0048829 | 0.0461167493213622 | root cap development | biological_process | The process whose specific outcome is the progression of the root cap over time, from its formation to the mature structure. The root cap protects the root meristem from friction as the root grows through the soil. The cap is made up of a group of parenchyma cells which secrete a glycoprotein mucilage as a lubricant. [GOC:tb]
7 | GO:0050832 | 0.0463098336440453 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
7 | GO:0071496 | 0.0463098336440453 | cellular response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:mah]
8 | GO:0009831 | 0.000132686669549988 | plant-type cell wall modification involved in multidimensional cell growth | biological_process | The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
8 | GO:0009828 | 0.000460259190975583 | plant-type cell wall loosening | biological_process | The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
8 | GO:0006949 | 0.00078431784328557 | syncytium formation | biological_process | The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division. [ISBN:[PHONE]]
8 | GO:0016036 | 0.00167717544687328 | cellular response to phosphate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]
8 | GO:0009826 | 0.00463796816260043 | unidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell. [ISBN:[PHONE]]
8 | GO:0010245 | 0.00479692996482659 | radial microtubular system formation | biological_process | Formation of radial microtubular systems during male meiotic cytokinesis in plants. [GOC:syr]
8 | GO:0010266 | 0.00479692996482659 | response to vitamin B1 | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus. [GOC:pz]
8 | GO:0000710 | 0.00957161285318069 | meiotic mismatch repair | biological_process | A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules. Correction of the mismatch can result in non-Mendelian segregation of alleles following meiosis. [GOC:elh, PMID:10357855]
8 | GO:0007112 | 0.00957161285318069 | male meiosis cytokinesis | biological_process | A cell cycle process that occurs as part of the male meiotic cell cycle and results in the division of the cytoplasm of a cell to produce two daughter cells. [GOC:ai]
8 | GO:0009228 | 0.00957161285318069 | thiamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. [CHEBI:18385, GOC:jl, ISBN:[PHONE]]
8 | GO:0030643 | 0.00957161285318069 | cellular phosphate ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of phosphate ions at the level of a cell. [GOC:mah]
8 | GO:0043570 | 0.00957161285318069 | maintenance of DNA repeat elements | biological_process | Any process involved in sustaining the fidelity and copy number of DNA repeat elements. [GOC:jl]
8 | GO:0019374 | 0.0113461069923388 | galactolipid metabolic process | biological_process | The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
8 | GO:0019375 | 0.0113461069923388 | galactolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
8 | GO:0051510 | 0.0119981204657609 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
8 | GO:0009247 | 0.0126662888845941 | glycolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
8 | GO:0022604 | 0.0126662888845941 | regulation of cell morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. [GOC:isa_complete]
8 | GO:0000018 | 0.0143241483001636 | regulation of DNA recombination | biological_process | Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. [GOC:go_curators, ISBN:[PHONE]]
8 | GO:0045910 | 0.0143241483001636 | negative regulation of DNA recombination | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination. [GOC:go_curators]
8 | GO:2000123 | 0.0143241483001636 | positive regulation of stomatal complex development | biological_process | Any process that activates or increases the frequency, rate or extent of stomatal complex development. [GOC:obol]
8 | GO:0031324 | 0.0154964444057535 | negative regulation of cellular metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
8 | GO:0001558 | 0.01549734429007 | regulation of cell growth | biological_process | Any process that modulates the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
8 | GO:0006664 | 0.01549734429007 | [NAME] process | biological_process | The chemical reactions and pathways involving glycolipids, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar group acylated by one or more fatty acids and the glycerol group may be absent. [CHEBI:33563, ISBN:[PHONE]]
8 | GO:0016045 | 0.0190546355103954 | detection of bacterium | biological_process | The series of events in which a stimulus from a bacterium is received and converted into a molecular signal. [GOC:hb]
8 | GO:0016998 | 0.0190546355103954 | cell wall macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. [GOC:go_curators]
8 | GO:2000112 | 0.0202882051945917 | regulation of cellular macromolecule biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of cellular macromolecule biosynthetic process. [GOC:obol]
8 | GO:0010389 | 0.0210375961358957 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
8 | GO:0010556 | 0.0210585302212482 | regulation of macromolecule biosynthetic process | biological_process | Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
8 | GO:0048638 | 0.0213606976597371 | regulation of developmental growth | biological_process | Any process that modulates the frequency, rate or extent of developmental growth. [GOC:go_curators]
8 | GO:0000086 | 0.0218875083223477 | G2/M transition of mitotic cell cycle | biological_process | The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex. [GOC:mtg_cell_cycle]
8 | GO:0019219 | 0.0221726419597406 | regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
8 | GO:0000280 | 0.0236296880619364 | nuclear division | biological_process | The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. [GOC:mah]
8 | GO:0009558 | 0.0237631732600069 | embryo sac cellularization | biological_process | The process in which the eight-nucleate single celled female gametophyte develops into the seven-celled female gametophyte. This mature structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu, ISBN:047186840X]
8 | GO:0051053 | 0.0237631732600069 | negative regulation of DNA metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving DNA. [GOC:ai]
8 | GO:0080092 | 0.0237631732600069 | regulation of pollen tube growth | biological_process | Any process that modulates the frequency, rate or extent of pollen tube growth. [PMID:19208902]
8 | GO:0051171 | 0.0243547567435181 | regulation of nitrogen compound metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
8 | GO:0046467 | 0.0245216650478902 | membrane lipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai]
8 | GO:1901990 | 0.0245216650478902 | regulation of mitotic cell cycle phase transition | biological_process | Any process that modulates the frequency, rate or extent of mitotic cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
8 | GO:0040008 | 0.0251160800907813 | regulation of growth | biological_process | Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah]
8 | GO:0022603 | 0.025427374711924 | regulation of anatomical structure morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. [GOC:mah]
8 | GO:1901987 | 0.025427374711924 | regulation of cell cycle phase transition | biological_process | Any process that modulates the frequency, rate or extent of cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
8 | GO:0044772 | 0.0263466742301682 | mitotic cell cycle phase transition | biological_process | The cell cycle process by which a cell commits to entering the next mitotic cell cycle phase. [GOC:mtg_cell_cycle]
8 | GO:0080167 | 0.0263466742301682 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
8 | GO:0044770 | 0.0272794217525403 | cell cycle phase transition | biological_process | The cell cycle process by which a cell commits to entering the next cell cycle phase. [GOC:mtg_cell_cycle]
8 | GO:0010769 | 0.0284498598981507 | regulation of cell morphogenesis involved in differentiation | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis contributing to cell differentiation. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. [GOC:dph, GOC:tb]
8 | GO:2000038 | 0.0284498598981507 | regulation of stomatal complex development | biological_process | Any process that modulates the frequency, rate or extent of stomatal complex development. [GOC:obol]
8 | GO:0031326 | 0.0295760419812018 | regulation of cellular biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
8 | GO:0009889 | 0.0303823218263434 | regulation of biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
8 | GO:0010605 | 0.0313443039173135 | negative regulation of macromolecule metabolic process | biological_process | Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
8 | GO:0009059 | 0.0316445396632611 | macromolecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [CHEBI:33694, GOC:mah]
8 | GO:0006643 | 0.0321399821414414 | membrane lipid metabolic process | biological_process | The chemical reactions and pathways involving membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai]
8 | GO:0007349 | 0.0331147933492393 | cellularization | biological_process | The separation of a multi-nucleate cell or syncytium into individual cells. An example of this is found in Drosophila melanogaster embryo development. [GOC:go_curators, GOC:mtg_sensu, ISBN:[PHONE]]
8 | GO:0060284 | 0.0331147933492393 | regulation of cell development | biological_process | Any process that modulates the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. [GOC:dph, GOC:tb]
8 | GO:0048285 | 0.0341734850606319 | organelle fission | biological_process | The creation of two or more organelles by division of one organelle. [GOC:jid]
8 | GO:0009892 | 0.0380460402091661 | negative regulation of metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
8 | GO:0007346 | 0.0383876018678645 | regulation of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb]
8 | GO:0045934 | 0.0428356591532989 | negative regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
8 | GO:0051172 | 0.044149624878591 | negative regulation of nitrogen compound metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
8 | GO:0080022 | 0.0469800474859693 | primary root development | biological_process | The process whose specific outcome is the progression of the primary root over time, from its formation to the mature structure. The primary root develops directly from the embryonic radicle. [GOC:dhl]
8 | GO:0060255 | 0.0493730423566243 | regulation of macromolecule metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
9 | GO:0008283 | 4.61116783557076e-12 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
9 | GO:0051567 | 4.33681688837766e-11 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
9 | GO:0006270 | 4.62453450469519e-09 | DNA replication initiation | biological_process | The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:[PHONE]]
9 | GO:0000911 | 3.35371532161027e-08 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
9 | GO:0009909 | 1.08285294436734e-07 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
9 | GO:0006275 | 1.29933998750913e-07 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
9 | GO:0006306 | 1.31211993322538e-07 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
9 | GO:0006346 | 7.95379190727893e-06 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
9 | GO:0010075 | 1.38867599353877e-05 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
9 | GO:0031048 | 2.41678221526819e-05 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
9 | GO:0006268 | 0.000163885006070672 | DNA unwinding involved in replication | biological_process | The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication. [ISBN:071673706X, ISBN:[PHONE]]
9 | GO:0048449 | 0.000261165805714105 | floral organ formation | biological_process | The process that gives rise to floral organs. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid, GOC:PO_curators, PO:0025395]
9 | GO:0000226 | 0.000302442388355068 | microtubule cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
9 | GO:0010389 | 0.000367898062801157 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
9 | GO:0010424 | 0.000422234168020495 | DNA methylation on cytosine within a CG sequence | biological_process | The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule. [GOC:dph, GOC:tb, [NAME]]
9 | GO:0010051 | 0.0012739559480361 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
9 | [NAME] | 0.00177395329596889 | brassinosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
9 | GO:0007067 | 0.00181640052758685 | mitosis | biological_process | A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell. [GOC:dph, GOC:ma, GOC:mah, ISBN:[PHONE]]
9 | GO:0048438 | 0.00196175520917651 | floral whorl development | biological_process | The process whose specific outcome is the progression of a floral whorl over time, from its formation to the mature structure. A floral whorl is a circular arrangement of parts of a flower arising from a stem of a plant. [GOC:dph, GOC:go_curators, GOC:PO_curators, GOC:tb, PO:0025023]
9 | GO:0007169 | 0.00196876711722124 | [NAME] receptor [NAME] signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:ceb, GOC:signaling]
9 | GO:0051726 | 0.00229733126307546 | regulation of cell cycle | biological_process | Any process that modulates the rate or extent of progression through the cell cycle. [GOC:ai, GOC:dph, GOC:tb]
9 | GO:0006323 | 0.00325358625758341 | DNA packaging | biological_process | Any process in which DNA and associated proteins are formed into a compact, orderly structure. [GOC:mah, ISBN:[PHONE]]
9 | GO:0048439 | 0.00397155734472041 | flower morphogenesis | biological_process | The process in which the anatomical structures of the flower are generated and organized. [GOC:go_curators]
9 | GO:0051445 | 0.00599812759103213 | regulation of meiotic cell cycle | biological_process | Any process that modulates the rate or extent of progression through the meiotic cell cycle. [GOC:ai, GOC:dph, GOC:tb]
9 | GO:0000075 | 0.00828438872182893 | cell cycle checkpoint | biological_process | A cell cycle process that controls cell cycle progression by monitoring the integrity of specific cell cycle events. A cell cycle checkpoint begins with detection of deficiencies or defects and ends with signal transduction. [GOC:mtg_cell_cycle]
9 | GO:0016572 | 0.00889298687287974 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
9 | GO:0007015 | 0.00933826020604702 | actin filament organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. [GOC:mah]
9 | GO:0033043 | 0.0103871793898138 | regulation of organelle organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:mah]
9 | GO:0031507 | 0.0108974677154966 | heterochromatin assembly | biological_process | The assembly of chromatin into heterochromatin, a compact and highly condensed form that is often, but not always, transcriptionally silent. [GOC:mah]
9 | GO:0070828 | 0.0108974677154966 | heterochromatin organization | biological_process | Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin. [GOC:mah]
9 | GO:0010090 | 0.0113074950174806 | trichome morphogenesis | biological_process | The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
9 | GO:0010015 | 0.012468391232678 | root morphogenesis | biological_process | The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support. [GOC:sm, ISBN:[PHONE]]
9 | GO:0010026 | 0.0151885204681464 | trichome differentiation | biological_process | The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, PMID:9367433]
9 | GO:0021700 | 0.0162234246678339 | developmental maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure, cell or cellular component to attain its fully functional state. [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06]
9 | GO:0045787 | 0.0205573744158405 | positive regulation of cell cycle | biological_process | Any process that activates or increases the rate or extent of progression through the cell cycle. [GOC:go_curators]
9 | GO:0000070 | 0.0206267988487004 | mitotic sister chromatid segregation | biological_process | The cell cycle process in which replicated homologous chromosomes are organized and then physically separated and apportioned to two sets during the mitotic cell cycle. Each replicated chromosome, composed of two sister chromatids, aligns at the cell equator, paired with its homologous partner. One homolog of each morphologic type goes into each of the resulting chromosome sets. [GOC:ai]
9 | GO:0000077 | 0.0206267988487004 | DNA damage checkpoint | biological_process | A cell cycle checkpoint that regulates progression through the cell cycle in response to DNA damage. A DNA damage checkpoint may blocks cell cycle progression (in G1, G2 or metaphase) or slow the rate at which S phase proceeds. [GOC:mtg_cell_cycle]
9 | GO:0006182 | 0.0206267988487004 | cGMP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cyclic GMP, guanosine 3',5'-phosphate. [ISBN:[PHONE]]
9 | [NAME] | 0.0206267988487004 | mitotic chromosome condensation | biological_process | The cell cycle process in which chromatin structure is compacted prior to and during mitosis in eukaryotic cells. [GOC:mah, ISBN:[PHONE]]
9 | GO:0018107 | 0.0206267988487004 | peptidyl-threonine phosphorylation | biological_process | The phosphorylation of peptidyl-threonine to form peptidyl-O-phospho-L-threonine. [[NAME]:AA0038]
9 | GO:0018210 | 0.0206267988487004 | peptidyl-threonine modification | biological_process | The modification of peptidyl-threonine. [GOC:go_curators]
9 | GO:0031055 | 0.0206267988487004 | chromatin remodeling at centromere | biological_process | Dynamic structural changes in centromeric DNA. [GOC:mah]
9 | GO:0031508 | 0.0206267988487004 | centromeric heterochromatin assembly | biological_process | The assembly of chromatin into heterochromatin near the centromere. [GOC:mah]
9 | GO:0031937 | 0.0206267988487004 | positive regulation of chromatin silencing | biological_process | Any process that activates or increases the frequency, rate or extent of chromatin silencing. [GOC:mah]
9 | GO:0032411 | 0.0206267988487004 | positive regulation of transporter activity | biological_process | Any process that activates or increases the activity of a transporter. [GOC:mah]
9 | GO:0032414 | 0.0206267988487004 | positive regulation of ion transmembrane transporter activity | biological_process | Any process that activates or increases the activity of an ion transporter. [GOC:mah, GOC:tb]
9 | GO:0034508 | 0.0206267988487004 | centromere complex assembly | biological_process | The aggregation, arrangement and bonding together of proteins and centromeric DNA molecules to form a centromeric protein-DNA complex. Includes the formation of the chromatin structures which form a platform for the kinetochore, and assembly of the kinetochore onto this specialized chromatin. In fission yeast and higher eukaryotes this process also includes the formation of heterochromatin at the outer repeat (pericentric) regions of the centromere. [GOC:mah, GOC:vw]
9 | GO:0035405 | 0.0206267988487004 | histone-threonine phosphorylation | biological_process | The modification of histones by addition of a phosphate group to a threonine residue. [GOC:bf]
9 | GO:0035407 | 0.0206267988487004 | histone H3-T11 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 11 of the histone. [GOC:bf]
9 | GO:0046068 | 0.0206267988487004 | cGMP metabolic process | biological_process | The chemical reactions and pathways involving cyclic GMP, guanosine 3',5'-phosphate. [GOC:go_curators]
9 | GO:0071277 | 0.0206267988487004 | cellular response to calcium ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. [GOC:mah]
9 | GO:0071588 | 0.0206267988487004 | hydrogen peroxide mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of hydrogen peroxide (H2O2). [GOC:mah, PMID:17043891]
9 | GO:0072355 | 0.0206267988487004 | histone H3-T3 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a threonine residue at position 3 of the histone. [GOC:mah]
9 | GO:0090308 | 0.0206267988487004 | regulation of methylation-dependent chromatin silencing | biological_process | Any process that modulates the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:BHF]
9 | GO:0090309 | 0.0206267988487004 | positive regulation of methylation-dependent chromatin silencing | biological_process | Any process that increases the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:BHF]
9 | GO:1901527 | 0.0206267988487004 | abscisic acid mediated signaling pathway involved in stomatal movement | biological_process | Any abscisic acid mediated signaling pathway that is involved in stomatal movement. [GOC:TermGenie, PMID:22730405]
9 | [NAME] | 0.0206267988487004 | hydrogen peroxide mediated signaling pathway involved in stomatal movement | biological_process | Any hydrogen peroxide mediated signaling pathway that is involved in stomatal movement. [GOC:TermGenie]
9 | GO:1901529 | 0.0206267988487004 | positive regulation of anion channel activity | biological_process | Any process that activates or increases the frequency, rate or extent of anion channel activity. [GOC:TermGenie]
9 | GO:0006310 | 0.023097474560525 | DNA recombination | biological_process | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:[PHONE]]
9 | [NAME] | 0.023097474560525 | RNA interference | biological_process | The process in which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and can occur through a specific decrease in the level of mRNA, or by negative regulation of translation, of both host genes and transgenes. [GOC:ems, PMID:11201747, PMID:11713190, PMID:18771919]
9 | GO:0043473 | 0.0246975510231677 | pigmentation | biological_process | The deposition or aggregation of coloring matter in an organism, tissue or cell. [GOC:jl]
9 | GO:0043476 | 0.0246975510231677 | pigment accumulation | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to some external stimulus. [GOC:jl]
9 | GO:0043478 | 0.0246975510231677 | pigment accumulation in response to UV light | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to a UV light stimulus. [GOC:jl]
9 | GO:0043479 | 0.0246975510231677 | pigment accumulation in tissues in response to UV light | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
9 | GO:0043480 | 0.0246975510231677 | pigment accumulation in tissues | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to an external stimulus. [GOC:jl]
9 | GO:0043481 | 0.0246975510231677 | anthocyanin accumulation in tissues in response to UV light | biological_process | The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
9 | GO:0006333 | 0.0253033326431669 | chromatin assembly or disassembly | biological_process | The formation or destruction of chromatin structures. [GOC:mah]
9 | GO:0007051 | 0.0253033326431669 | spindle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the spindle, the array of microtubules and associated molecules that forms between opposite poles of a eukaryotic cell during DNA segregation and serves to move the duplicated chromosomes apart. [GOC:mah]
9 | GO:0048447 | 0.0253033326431669 | sepal morphogenesis | biological_process | The process in which the anatomical structures of the sepal are generated and organized. [GOC:go_curators]
9 | GO:0048451 | 0.0253033326431669 | petal formation | biological_process | The process that gives rise to the petal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
9 | GO:0048453 | 0.0253033326431669 | sepal formation | biological_process | The process that gives rise to the sepal. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
9 | GO:0051225 | 0.0253033326431669 | spindle assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the spindle, the array of microtubules and associated molecules that serves to move duplicated chromosomes apart. [GOC:ai, GOC:expert_rg, GOC:mtg_sensu, GOC:tb]
9 | GO:0009913 | 0.0261025823499353 | epidermal cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis. [GOC:dph, GOC:go_curators, GOC:mtg_sensu, GOC:sdb_2009, GOC:tb]
9 | GO:0030855 | 0.0261025823499353 | epithelial cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium. [GOC:ecd, PMID:11839751]
9 | GO:0060429 | 0.0261025823499353 | epithelium development | biological_process | The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. [GOC:dph, GOC:mtg_lung]
9 | GO:0008544 | 0.0269010973071461 | epidermis development | biological_process | The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species. [GOC:go_curators, UBERON:0001003]
9 | GO:0048446 | 0.0275100680189057 | petal morphogenesis | biological_process | The process in which the anatomical structures of the petal are generated and organized. [GOC:go_curators]
9 | GO:0009799 | 0.027801026185908 | specification of symmetry | biological_process | The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. [GOC:go_curators]
9 | GO:0009855 | 0.027801026185908 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
9 | GO:0009292 | 0.0283818050400431 | genetic transfer | biological_process | In the absence of a sexual life cycle, the process involved in the introduction of genetic information to create a genetically different individual. [GOC:clt]
9 | GO:0009294 | 0.0283818050400431 | DNA mediated transformation | biological_process | The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material. [ISBN:[PHONE], Wikipedia:Transformation_(genetics)]
9 | GO:0010311 | 0.0283818050400431 | lateral root formation | biological_process | The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators, PMID:17259263]
9 | GO:0031497 | 0.0283818050400431 | chromatin assembly | biological_process | The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus. [http://www.infobiogen.fr/services/chromcancer/IntroItems/ChromatinEducEng.html, PMID:20404130]
9 | GO:0051607 | 0.029436219626081 | defense response to virus | biological_process | Reactions triggered in response to the presence of a virus that act to protect the cell or organism. [GOC:ai]
9 | GO:0048442 | 0.0298162518996383 | sepal development | biological_process | The process whose specific outcome is the progression of the sepal over time, from its formation to the mature structure. [GOC:go_curators]
9 | GO:0048464 | 0.0298162518996383 | flower calyx development | biological_process | The process whose specific outcome is the progression of the flower calyx over time, from its formation to the mature structure. [GOC:go_curators]
9 | [NAME] | 0.0305153786748799 | posttranscriptional gene silencing by RNA | biological_process | Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]
9 | GO:0009790 | 0.0316183501228184 | embryo development | biological_process | The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu]
9 | GO:0022622 | 0.0321999174224709 | root system development | biological_process | The process whose specific outcome is the progression of the root system over time, from its formation to the mature structure. [GOC:isa_complete]
9 | GO:0048364 | 0.0321999174224709 | root development | biological_process | The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. [GOC:jid, PO:0009005]
9 | GO:0048527 | 0.0322214989291474 | lateral root development | biological_process | The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tb]
9 | GO:0070925 | 0.0322214989291474 | organelle assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form an organelle. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. [GOC:mah]
9 | GO:0016444 | 0.0326717036805295 | somatic cell DNA recombination | biological_process | Recombination occurring within or between DNA molecules in somatic cells. [GOC:ma]
9 | GO:0071396 | 0.032800408733851 | cellular response to lipid | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:mah]
9 | GO:0097306 | 0.0333915860060902 | cellular response to alcohol | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
9 | GO:0010638 | 0.0346788870765098 | positive regulation of organelle organization | biological_process | Any process that increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:dph, GOC:tb]
9 | GO:0071555 | 0.0348669524405537 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
9 | GO:0044272 | 0.0356447587683883 | sulfur compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:jl]
9 | GO:0016441 | 0.0362080804398145 | posttranscriptional gene silencing | biological_process | The inactivation of gene expression by a posttranscriptional mechanism. [GOC:mah, PMID:15020054]
9 | GO:0048469 | 0.0371223845432591 | cell maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state. [GOC:go_curators]
9 | GO:0048764 | 0.0371223845432591 | trichoblast maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a trichoblast cell to attain its fully functional state. [GOC:jid]
9 | GO:0048765 | 0.0371223845432591 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
9 | GO:0007000 | 0.0371975678993144 | nucleolus organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus. [GOC:dph, GOC:jid, GOC:jl, GOC:mah]
9 | GO:0051130 | 0.0384567872050815 | positive regulation of cellular component organization | biological_process | Any process that activates or increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:ai]
9 | GO:0006974 | 0.0392845028178452 | response to DNA damage stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators]
9 | GO:0009738 | 0.0392845028178452 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
9 | GO:0010054 | 0.039752729146536 | trichoblast differentiation | biological_process | The process in which a relatively unspecialized cell acquires the specialized features of a trichoblast, a root epidermal cell that will give rise to a root hair. [GOC:tb]
9 | GO:0048441 | 0.0400260248847209 | petal development | biological_process | The process whose specific outcome is the progression of the petal over time, from its formation to the mature structure. [GOC:go_curators]
9 | GO:0048465 | 0.0400260248847209 | corolla development | biological_process | The process whose specific outcome is the progression of the corolla over time, from its formation to the mature structure. [GOC:go_curators]
9 | GO:0000819 | 0.0408313635293558 | sister chromatid segregation | biological_process | The cell cycle process in which sister chromatids are organized and then physically separated and apportioned to two or more sets. [GOC:ai, GOC:elh]
9 | GO:0010069 | 0.0408313635293558 | zygote asymmetric cytokinesis in embryo sac | biological_process | The division of the zygote in a plane perpendicular to the long axis of the embryo sac to produce a larger basal cell near the micropyle and a small terminal cell close to what was the central cell and is now the developing endosperm. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb, ISBN:[PHONE]]
9 | GO:0010070 | 0.0408313635293558 | zygote asymmetric cell division | biological_process | The division of the zygote into two daughter cells that will adopt developmentally distinct potentials. [GOC:tb]
9 | GO:0010588 | 0.0408313635293558 | cotyledon vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants. [PMID:10559439]
9 | GO:0015692 | 0.0408313635293558 | lead ion transport | biological_process | The directed movement of lead (Pb) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
9 | GO:0030261 | 0.0408313635293558 | chromosome condensation | biological_process | The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells. [GOC:mah, ISBN:[PHONE]]
9 | GO:0051446 | 0.0408313635293558 | positive regulation of meiotic cell cycle | biological_process | Any process that activates or increases the frequency, rate or extent of progression through the meiotic cell cycle. [GOC:ai, GOC:dph, GOC:tb]
9 | GO:0071421 | 0.0408313635293558 | manganese ion transmembrane transport | biological_process | A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
9 | GO:0080060 | 0.0408313635293558 | integument development | biological_process | The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex. [NAME], PO:0020021]
9 | GO:2000012 | 0.0408313635293558 | regulation of auxin polar transport | biological_process | Any process that modulates the frequency, rate or extent of auxin polar transport. [GOC:obol]
9 | GO:2000379 | 0.0408313635293558 | positive regulation of reactive oxygen species metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
9 | GO:0045229 | 0.0409904970099727 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
9 | GO:0008356 | 0.0419479998780728 | asymmetric cell division | biological_process | The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. [PMID:11672519]
9 | GO:0010101 | 0.0419479998780728 | post-embryonic root morphogenesis | biological_process | The process in which the anatomical structures of the post-embryonic root are generated and organized. The post-embryonic root is the root formed after the embryonic phase has been completed. [GOC:tb]
9 | GO:0010102 | 0.0419479998780728 | lateral root morphogenesis | biological_process | The process in which the anatomical structures of a lateral root are generated and organized. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators]
9 | [NAME] | 0.0420807110152163 | cellular component assembly | biological_process | The aggregation, arrangement and bonding together of a cellular component. [GOC:isa_complete]
9 | GO:0009310 | 0.0428213967461069 | amine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
9 | [NAME] | 0.0428213967461069 | cellular biogenic amine catabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:go_curators, GOC:jl, ISBN:[PHONE]]
9 | GO:0051128 | 0.0439161683180763 | regulation of cellular component organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:ai]
9 | GO:0000902 | 0.0443084217770605 | cell morphogenesis | biological_process | The developmental process in which the size or shape of a cell is generated and organized. [GOC:clt, GOC:dph, GOC:go_curators, GOC:tb]
9 | GO:0048440 | 0.0445497635117395 | carpel development | biological_process | The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style. [GOC:go_curators]
9 | GO:0010053 | 0.0453626503982203 | root epidermal cell differentiation | biological_process | The process in which a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast. [GOC:tb]
9 | GO:0006338 | 0.0469119652207977 | chromatin remodeling | biological_process | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. [GOC:jid, PMID:12697820]
9 | GO:0009615 | 0.0488958292491942 | response to virus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus. [GOC:hb]
9 | GO:0010162 | 0.0488958292491942 | seed dormancy process | biological_process | A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors. [GOC:lr, GOC:PO_curators, ISBN:[PHONE], PO_REF:00009]
9 | GO:0022611 | 0.0488958292491942 | dormancy process | biological_process | A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated. [GOC:isa_complete, GOC:PO_curators, PO_REF:00009]
10 | GO:0031062 | 0.00119227043289336 | positive regulation of histone methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones. [GOC:mah]
10 | GO:0051567 | 0.00141815717548022 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
10 | GO:0006346 | 0.0021694374868493 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
10 | GO:0009944 | 0.00324335540890306 | polarity specification of adaxial/abaxial axis | biological_process | The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
10 | GO:0006306 | 0.00480737374719106 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
10 | GO:0009855 | 0.00515112065725042 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
10 | GO:0048767 | 0.00561482466172267 | [NAME] elongation | biological_process | The process in which the root hair grows longer. [GOC:jid, PMID:12468740]
10 | GO:0031048 | 0.00643594786381925 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
10 | GO:0010073 | 0.00704767154721879 | meristem maintenance | biological_process | Any process involved in maintaining the identity, size and shape of a meristem. [GOC:tb]
10 | GO:0009933 | 0.00718452355465604 | meristem structural organization | biological_process | Organization of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm, ISBN:[PHONE]]
10 | GO:0048575 | 0.00791481422234408 | short-day photoperiodism, flowering | biological_process | A change from vegetative to reproductive phase as a result of detection of, or exposure to, a period of light that falls short of the critical day length. The critical day length varies between species. Although the term is short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 minus the critical day length. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
10 | GO:0051049 | 0.00980283245661498 | regulation of transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
10 | GO:0009124 | 0.0104146410205498 | nucleoside monophosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
10 | GO:0010639 | 0.0104146410205498 | negative regulation of organelle organization | biological_process | Any process that decreases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:dph, GOC:tb]
10 | GO:0051129 | 0.0104146410205498 | negative regulation of cellular component organization | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:ai]
10 | GO:0071555 | 0.0112491572130012 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
10 | [NAME] | 0.0116032725526972 | cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah]
10 | GO:0009698 | 0.0130636390290012 | phenylpropanoid metabolic process | biological_process | The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid. [GOC:jl]
10 | GO:0009123 | 0.0132148678462409 | nucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
10 | GO:0045229 | 0.0136895568068523 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
10 | GO:0009804 | 0.0148040310218506 | [NAME] process | biological_process | The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
10 | GO:0009805 | 0.0148040310218506 | coumarin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
10 | GO:0010014 | 0.0163201446418003 | meristem initiation | biological_process | Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm]
10 | GO:0048609 | 0.0181311865783909 | multicellular organismal reproductive process | biological_process | The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. [GOC:dph, GOC:jid, GOC:tb]
10 | GO:0010431 | 0.0181346044732219 | seed maturation | biological_process | A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation, acquisition of desiccation tolerance, growth arrest and the entry into a dormancy period of variable length that is broken upon germination. [PMID:16096971]
10 | GO:0048366 | 0.0184659518526872 | leaf development | biological_process | The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. [GOC:go_curators]
10 | GO:0010359 | 0.0196652220995369 | regulation of anion channel activity | biological_process | Any process that modulates the frequency, rate or extent of anion channel activity. [PMID:17319842]
10 | GO:0006059 | 0.0201471058523264 | hexitol metabolic process | biological_process | The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
10 | GO:0006106 | 0.0201471058523264 | fumarate metabolic process | biological_process | The chemical reactions and pathways involving fumarate, the anion of trans-1,2-ethenedicarboxylic acid, the diastereoisomer of maleate. It is a key intermediate in metabolism and is formed in the TCA cycle from succinate and converted into malate. [ISBN:[PHONE]]
10 | GO:0007135 | 0.0201471058523264 | meiosis II | biological_process | A cell cycle process comprising the steps by which a cell progresses through the second phase of meiosis, in which cells divide and separate the two chromatids in each chromosome. [GOC:dph, GOC:mah, ISBN:[PHONE]]
10 | GO:0007142 | 0.0201471058523264 | male meiosis II | biological_process | A cell cycle process comprising the steps by which a cell progresses through male meiosis II, the second meiotic division in the male germline. [GOC:dph, GOC:mah]
10 | GO:0010068 | 0.0201471058523264 | protoderm histogenesis | biological_process | The formation of the primary meristem or meristematic tissue that gives rise to the epidermis. [GOC:tb, ISBN:[PHONE]]
10 | GO:0010248 | 0.0201471058523264 | establishment or maintenance of transmembrane electrochemical gradient | biological_process | The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:sm]
10 | GO:0016075 | 0.0201471058523264 | rRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of rRNA, ribosomal RNA, a structural constituent of ribosomes. [GOC:ai]
10 | GO:0019322 | 0.0201471058523264 | pentose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. [ISBN:[PHONE]]
10 | GO:0019401 | 0.0201471058523264 | alditol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
10 | GO:0019406 | 0.0201471058523264 | hexitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
10 | GO:0019567 | 0.0201471058523264 | arabinose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of arabinose, arabino-pentose. [GOC:ai]
10 | GO:0019593 | 0.0201471058523264 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
10 | GO:0019594 | 0.0201471058523264 | mannitol metabolic process | biological_process | The chemical reactions and pathways involving mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
10 | GO:0031055 | 0.0201471058523264 | chromatin remodeling at centromere | biological_process | Dynamic structural changes in centromeric DNA. [GOC:mah]
10 | GO:0031057 | 0.0201471058523264 | negative regulation of histone modification | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent alteration of a histone. [GOC:mah]
10 | GO:0031508 | 0.0201471058523264 | centromeric heterochromatin assembly | biological_process | The assembly of chromatin into heterochromatin near the centromere. [GOC:mah]
10 | GO:0031937 | 0.0201471058523264 | positive regulation of chromatin silencing | biological_process | Any process that activates or increases the frequency, rate or extent of chromatin silencing. [GOC:mah]
10 | GO:0032196 | 0.0201471058523264 | transposition | biological_process | Any process involved in mediating the movement of discrete segments of DNA between nonhomologous sites. [GOC:jp, ISBN:[PHONE]]
10 | GO:0032197 | 0.0201471058523264 | transposition, RNA-mediated | biological_process | Any process involved in a type of transpositional recombination which occurs via an RNA intermediate. [GOC:jp, ISBN:[PHONE]]
10 | GO:0034508 | 0.0201471058523264 | centromere complex assembly | biological_process | The aggregation, arrangement and bonding together of proteins and centromeric DNA molecules to form a centromeric protein-DNA complex. Includes the formation of the chromatin structures which form a platform for the kinetochore, and assembly of the kinetochore onto this specialized chromatin. In fission yeast and higher eukaryotes this process also includes the formation of heterochromatin at the outer repeat (pericentric) regions of the centromere. [GOC:mah, GOC:vw]
10 | GO:0035065 | 0.0201471058523264 | regulation of histone acetylation | biological_process | Any process that modulates the frequency, rate or extent of the addition of an acetyl group to a histone protein. [GOC:bf]
10 | GO:0035067 | 0.0201471058523264 | negative regulation of histone acetylation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of an acetyl group to a histone protein. [GOC:bf]
10 | GO:0042178 | 0.0201471058523264 | xenobiotic catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:jl]
10 | [NAME] | 0.0201471058523264 | establishment of petal orientation | biological_process | The process that determines the orientation of petals with reference to the central axis. [GOC:tb, PMID:10572040]
10 | GO:0048559 | 0.0201471058523264 | establishment of floral organ orientation | biological_process | The process that determines the orientation of the floral organs with reference to the central axis of the flower. [GOC:jid]
10 | GO:0048560 | 0.0201471058523264 | establishment of anatomical structure orientation | biological_process | The process that determines the orientation of an anatomical structure with reference to an axis. [GOC:jid]
10 | GO:0048561 | 0.0201471058523264 | establishment of organ orientation | biological_process | The process that determines the orientation of an organ or tissue with reference to an axis. [GOC:jid]
10 | [NAME] | 0.0201471058523264 | barbed-end actin filament capping | biological_process | The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. [ISBN:071673706X]
10 | GO:0051569 | 0.0201471058523264 | regulation of histone H3-K4 methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. [GOC:ai]
10 | GO:0051571 | 0.0201471058523264 | positive regulation of histone H3-K4 methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. [GOC:mah]
10 | GO:0061085 | 0.0201471058523264 | regulation of histone H3-K27 methylation | biological_process | Any process that modulates the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. [GOC:dph, GOC:tb]
10 | GO:0061087 | 0.0201471058523264 | positive regulation of histone H3-K27 methylation | biological_process | Any process that increases the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. [GOC:dph, GOC:tb]
10 | GO:0090239 | 0.0201471058523264 | regulation of histone H4 acetylation | biological_process | Any process that modulates the rate, frequency, or extent of histone H4 acetylation, the modification of histone H4 by the addition of an acetyl group. [GOC:dph, GOC:tb]
10 | GO:0090241 | 0.0201471058523264 | negative regulation of histone H4 acetylation | biological_process | Any process that decreases the rate, frequency, or extent of histone H4 acetylation, the modification of histone H4 by the addition of an acetyl group. [GOC:dph, GOC:tb]
10 | GO:0090308 | 0.0201471058523264 | regulation of methylation-dependent chromatin silencing | biological_process | Any process that modulates the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:BHF]
10 | GO:0090309 | 0.0201471058523264 | positive regulation of methylation-dependent chromatin silencing | biological_process | Any process that increases the rate, frequency, or extent of the repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:BHF]
10 | GO:0090428 | 0.0201471058523264 | perianth development | biological_process | The process whose specific outcome is the progression of the perianth over time, from its formation to the mature structure. The perianth is a collective phyllome structure composed of two or more petals, sepals, or tepals. [GOC:tb, PO:0009058]
10 | GO:1901983 | 0.0201471058523264 | regulation of protein acetylation | biological_process | Any process that modulates the frequency, rate or extent of protein acetylation. [GOC:TermGenie, PMID:22117195]
10 | GO:1901984 | 0.0201471058523264 | negative regulation of protein acetylation | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of protein acetylation. [GOC:TermGenie, PMID:22117195]
10 | GO:2000756 | 0.0201471058523264 | regulation of peptidyl-lysine acetylation | biological_process | Any process that modulates the frequency, rate or extent of peptidyl-lysine acetylation. [GOC:obol]
10 | GO:2000757 | 0.0201471058523264 | negative regulation of peptidyl-lysine acetylation | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of peptidyl-lysine acetylation. [GOC:obol]
10 | GO:2001251 | 0.0201471058523264 | negative regulation of chromosome organization | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of chromosome organization. [GOC:obol]
10 | GO:0032504 | 0.0202271951642378 | multicellular organism reproduction | biological_process | The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. [GOC:isa_complete, GOC:jid]
10 | [NAME] | 0.0210987764363469 | RNA interference | biological_process | The process in which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and can occur through a specific decrease in the level of mRNA, or by negative regulation of translation, of both host genes and transgenes. [GOC:ems, PMID:11201747, PMID:11713190, PMID:18771919]
10 | GO:0010089 | 0.0218117145393076 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
10 | GO:0008283 | 0.022487368663241 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
10 | GO:0009825 | 0.0228811701554218 | multidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes. [ISBN:[PHONE]]
10 | GO:0043269 | 0.0232411230782087 | regulation of ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
10 | GO:0044702 | 0.0232782216718466 | single organism reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals, involving a single organism. [GOC:jl]
10 | GO:0009826 | 0.0257659841170574 | unidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell. [ISBN:[PHONE]]
10 | GO:0009740 | 0.0258858187752533 | gibberellic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm]
10 | GO:0010476 | 0.0258858187752533 | [NAME] mediated signaling pathway | biological_process | The series of molecular signals generated as a consequence of gibberellin stimulus. [PMID:17521411]
10 | GO:0048439 | 0.0258858187752533 | flower morphogenesis | biological_process | The process in which the anatomical structures of the flower are generated and organized. [GOC:go_curators]
10 | GO:0048827 | 0.0267755230522035 | phyllome development | biological_process | The process whose specific outcome is the progression of a phyllome over time, from its formation to the mature structure. A phyllome is a collective term for all the different types of leaves appearing on plants. [GOC:devbiol, GOC:tb, PO:0006001]
10 | GO:0022898 | 0.027167132593749 | regulation of transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of transmembrane transporter activity. [GOC:dph, GOC:mtg_cardio, GOC:mtg_transport]
10 | GO:0032409 | 0.027167132593749 | regulation of transporter activity | biological_process | Any process that modulates the activity of a transporter. [GOC:mah]
10 | GO:0032412 | 0.027167132593749 | regulation of ion transmembrane transporter activity | biological_process | Any process that modulates the activity of an ion transporter. [GOC:mah, GOC:tb]
10 | GO:0040034 | 0.027167132593749 | regulation of development, heterochronic | biological_process | Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and the rate at which this time point is reached. [PMID:9442909]
10 | [NAME] | 0.0279373968476188 | posttranscriptional gene silencing by RNA | biological_process | Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]
10 | GO:0009963 | 0.0280654741398483 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
10 | GO:0071370 | 0.0280654741398483 | cellular response to gibberellin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:mah]
10 | GO:0009556 | 0.0312831970410361 | microsporogenesis | biological_process | The process in which the microsporocyte undergoes meiosis, giving rise to four haploid microspores. [GOC:mtg_plant, GOC:tb]
10 | GO:0048236 | 0.0312831970410361 | plant-type spore development | biological_process | The process whose specific outcome is the progression of the spore over time, from its formation to the mature structure. The spore gives rise to gametophytes. [GOC:jid, http://www.m-w.com]
10 | GO:0033043 | 0.0318293048769318 | regulation of organelle organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:mah]
10 | GO:0016441 | 0.0331984349858857 | posttranscriptional gene silencing | biological_process | The inactivation of gene expression by a posttranscriptional mechanism. [GOC:mah, PMID:15020054]
10 | GO:0048646 | 0.0345138012650017 | anatomical structure formation involved in morphogenesis | biological_process | The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. [GOC:dph, GOC:jid, GOC:tb]
10 | GO:0009932 | 0.0346038583753229 | cell tip growth | biological_process | Growth that occurs specifically at the tip of a cell. [GOC:jid]
10 | GO:0042335 | 0.0356277964275187 | cuticle development | biological_process | The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:[PHONE]]
10 | GO:0010608 | 0.0373040410944501 | posttranscriptional regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript. [GOC:dph, GOC:tb]
10 | GO:0048441 | 0.0377271989440568 | petal development | biological_process | The process whose specific outcome is the progression of the petal over time, from its formation to the mature structure. [GOC:go_curators]
10 | GO:0048465 | 0.0377271989440568 | corolla development | biological_process | The process whose specific outcome is the progression of the corolla over time, from its formation to the mature structure. [GOC:go_curators]
10 | GO:0006260 | 0.0386500160284462 | DNA replication | biological_process | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah]
10 | GO:0071897 | 0.0386500160284462 | DNA biosynthetic process | biological_process | The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:mah]
10 | GO:0006072 | 0.0398914629070838 | glycerol-3-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:go_curators, ISBN:[PHONE]]
10 | GO:0006166 | 0.0398914629070838 | purine ribonucleoside salvage | biological_process | Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis. [GOC:jl]
10 | GO:0006169 | 0.0398914629070838 | adenosine salvage | biological_process | Any process that generates adenosine, adenine riboside, from derivatives of it without de novo synthesis. [GOC:jl]
10 | GO:0006344 | 0.0398914629070838 | maintenance of chromatin silencing | biological_process | The maintenance of chromatin in a transcriptionally silent state such as heterochromatin. [GOC:mah]
10 | GO:0006805 | 0.0398914629070838 | xenobiotic metabolic process | biological_process | The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:cab2]
10 | GO:0009157 | 0.0398914629070838 | deoxyribonucleoside monophosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
10 | GO:0009162 | 0.0398914629070838 | deoxyribonucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
10 | GO:0010424 | 0.0398914629070838 | DNA methylation on cytosine within a CG sequence | biological_process | The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule. [GOC:dph, GOC:tb, [NAME]]
10 | GO:0010582 | 0.0398914629070838 | floral meristem determinacy | biological_process | The process in which a floral meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate). [PMID:18441215]
10 | GO:0010599 | 0.0398914629070838 | production of lsiRNA involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form lsiRNA (long small interfering RNA), a class of siRNAs 30 to 40 nt in length. lsiRNAs are induced by pathogen infection or under specific growth conditions. [PMID:18003861]
10 | GO:0015712 | 0.0398914629070838 | hexose phosphate transport | biological_process | The directed movement of hexose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
10 | GO:0015760 | 0.0398914629070838 | glucose-6-phosphate transport | biological_process | The directed movement of glucose-6-phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
10 | GO:0019566 | 0.0398914629070838 | arabinose metabolic process | biological_process | The chemical reactions and pathways involving arabinose, arabino-pentose. L-Arabinose occurs both free, for example in the heartwood of many conifers, and in the combined state, as a constituent of plant hemicelluloses, bacterial polysaccharides etc. D-arabinose is a constituent of arabinonucleosides. [ISBN:[PHONE]]
10 | GO:0042372 | 0.0398914629070838 | phylloquinone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phylloquinone, vitamin [NAME], a quinone-derived compound synthesized by green plants. [GOC:jl, http://www.dentistry.leeds.ac.uk/biochem/thcme/vitamins.html#k]
10 | GO:0042374 | 0.0398914629070838 | [NAME] process | biological_process | The chemical reactions and pathways involving phylloquinone, a quinone-derived compound synthesized by green plants. Phylloquinone has vitamin K activity and is known as vitamin [NAME]. [GOC:jl, http://www.dentistry.leeds.ac.uk/biochem/thcme/vitamins.html#k]
10 | GO:0043174 | 0.0398914629070838 | nucleoside salvage | biological_process | Any process which produces a nucleotide, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose (a deoxyribonucleotide), from derivatives of it without de novo synthesis. [GOC:jl]
10 | GO:0043967 | 0.0398914629070838 | histone H4 acetylation | biological_process | The modification of histone H4 by the addition of an acetyl group. [GOC:jl]
10 | GO:0046086 | 0.0398914629070838 | adenosine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. [GOC:go_curators]
10 | GO:0046621 | 0.0398914629070838 | negative regulation of organ growth | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organ of an organism. [GOC:bf, GOC:tb]
10 | GO:0051574 | 0.0398914629070838 | positive regulation of histone H3-K9 methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
10 | GO:0052646 | 0.0398914629070838 | alditol phosphate metabolic process | biological_process | The chemical reactions and pathways involving alditol phosphates, any phosphorylated polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [CHEBI:22297, ISBN:[PHONE]]
10 | GO:0071466 | 0.0398914629070838 | cellular response to xenobiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms. [GOC:mah]
10 | GO:0044070 | 0.0401902077426052 | regulation of anion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
10 | GO:0010087 | 0.0403757136502476 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
10 | GO:0043090 | 0.0403757136502476 | amino acid import | biological_process | The directed movement of amino acids into a cell or organelle. [GOC:jl]
10 | GO:0042545 | 0.0414366876958795 | cell wall modification | biological_process | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl]
10 | GO:0009965 | 0.0421819273481455 | leaf morphogenesis | biological_process | The process in which the anatomical structures of the leaf are generated and organized. [GOC:go_curators]
10 | GO:0009749 | 0.0431160486453878 | response to glucose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. [GOC:jl]
10 | GO:0009962 | 0.0431160486453878 | regulation of flavonoid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
10 | GO:0046777 | 0.0434469076940702 | protein autophosphorylation | biological_process | The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. [ISBN:[PHONE]]
10 | GO:0006468 | 0.0450902681926642 | protein phosphorylation | biological_process | The process of introducing a phosphate group on to a protein. [GOC:hb]
10 | GO:0010162 | 0.0455113325344196 | seed dormancy process | biological_process | A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors. [GOC:lr, GOC:PO_curators, ISBN:[PHONE], PO_REF:00009]
10 | GO:0022611 | 0.0455113325344196 | dormancy process | biological_process | A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated. [GOC:isa_complete, GOC:PO_curators, PO_REF:00009]
10 | GO:0010051 | 0.0459473448159768 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
10 | GO:0016572 | 0.0459473448159768 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
10 | [NAME] | 0.0471748134278172 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
10 | GO:0006598 | 0.0499272317550427 | polyamine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of polyamines, any organic compound containing two or more amino groups. [ISBN:[PHONE]]
10 | GO:0042375 | 0.0499272317550427 | quinone cofactor metabolic process | biological_process | The chemical reactions and pathways involving quinone cofactors. [GOC:go_curators]
10 | GO:0045426 | 0.0499272317550427 | quinone cofactor biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any quinone cofactor, such as menaquinone (vitamin K2), ubiquinone (coenzyme Q) or phylloquinone (vitamin [NAME]). [GOC:mb]
10 | GO:1901661 | 0.0499272317550427 | [NAME] process | biological_process | The chemical reactions and pathways involving quinone. [GOC:pr, GOC:TermGenie]
10 | GO:1901663 | 0.0499272317550427 | quinone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of quinone. [GOC:pr, GOC:TermGenie]
11 | GO:0006268 | 5.89406720074427e-09 | DNA unwinding involved in replication | biological_process | The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication. [ISBN:071673706X, ISBN:[PHONE]]
11 | GO:0006275 | 8.04340363090619e-09 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
11 | GO:0006306 | 8.20537652425223e-08 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
11 | GO:0051567 | 1.25500896461745e-07 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
11 | GO:0008283 | 3.06789493868078e-07 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
11 | GO:0006270 | 7.75487135745765e-05 | DNA replication initiation | biological_process | The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:[PHONE]]
11 | GO:0006086 | 0.000258270657521886 | acetyl-CoA biosynthetic process from pyruvate | biological_process | The chemical reactions and pathways resulting in the formation of acetyl-CoA from pyruvate. [GOC:dph, GOC:go_curators, GOC:tb]
11 | GO:0019288 | 0.000270932067686655 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
11 | GO:0006636 | 0.000417895050087556 | unsaturated fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms. [GOC:mah, MetaCyc:PWY-762, MetaCyc:PWY-782]
11 | GO:0009106 | 0.000448164540206756 | lipoate metabolic process | biological_process | The chemical reactions and pathways involving lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. [GOC:ai, ISBN:[PHONE]]
11 | GO:0010075 | 0.000580325743164093 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
11 | GO:0006084 | 0.000806390948395461 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
11 | GO:0006766 | 0.000890959799984017 | vitamin metabolic process | biological_process | The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems. [GOC:ai]
11 | GO:0010389 | 0.000890959799984017 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
11 | GO:0006546 | 0.000974041067691659 | glycine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. [GOC:go_curators]
11 | GO:0000280 | 0.00118449476277516 | nuclear division | biological_process | The division of a cell nucleus into two nuclei, with DNA and other nuclear contents distributed between the daughter nuclei. [GOC:mah]
11 | GO:0042023 | 0.00129662937643716 | DNA endoreduplication | biological_process | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. [GOC:jl]
11 | GO:0046686 | 0.00169440185892977 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
11 | GO:0000911 | 0.00170985951002472 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
11 | GO:0019344 | 0.00180339667303461 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
11 | GO:0009909 | 0.00220160380547398 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
11 | GO:0019253 | 0.00250187036787311 | reductive pentose-phosphate cycle | biological_process | The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate. [ISBN:[PHONE]]
11 | GO:0042744 | 0.00374925908698541 | hydrogen peroxide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl]
11 | [NAME] | 0.0042688281282513 | anatomical structure morphogenesis | biological_process | The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form. [GOC:go_curators, ISBN:[PHONE]]
11 | GO:0006733 | 0.00446086888116595 | oxidoreduction coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed. [GOC:mah]
11 | GO:0046165 | 0.00572701359252666 | alcohol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, GOC:ai]
11 | GO:0015995 | 0.00664155177639358 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
11 | GO:0019751 | 0.00671441025480731 | polyol metabolic process | biological_process | The chemical reactions and pathways involving a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. [CHEBI:26191, GOC:go_curators]
11 | GO:0051726 | 0.00841257720297542 | regulation of cell cycle | biological_process | Any process that modulates the rate or extent of progression through the cell cycle. [GOC:ai, GOC:dph, GOC:tb]
11 | GO:0009142 | 0.00863441509817774 | nucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
11 | GO:0009736 | 0.00902633694362843 | cytokinin mediated signaling pathway | biological_process | A series of molecular signals induced by the detection of cytokinin. [GOC:sm]
11 | [NAME] | 0.00902633694362843 | photosynthetic electron transport in photosystem I | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
11 | GO:0050790 | 0.00904547436683911 | regulation of catalytic activity | biological_process | Any process that modulates the activity of an enzyme. [GOC:ai]
11 | GO:0016458 | 0.00917520451304603 | gene silencing | biological_process | Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. [GOC:dph, GOC:jid, GOC:tb]
11 | GO:0071555 | 0.00917520451304603 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
11 | GO:1901659 | 0.010685438364487 | glycosyl compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycosyl compound. [GOC:pr, GOC:TermGenie]
11 | GO:0009695 | 0.010927140025217 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
11 | GO:0006342 | 0.0126972961510564 | chromatin silencing | biological_process | Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. [GOC:mah, PMID:10219245]
11 | GO:0045814 | 0.0131893904213175 | negative regulation of gene expression, epigenetic | biological_process | Any epigenetic process that stops, prevents or reduces the rate of gene expression. [GOC:go_curators]
11 | GO:0005976 | 0.0131961535322497 | polysaccharide metabolic process | biological_process | The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, ISBN:[PHONE]]
11 | GO:0044262 | 0.0138285172179593 | cellular carbohydrate metabolic process | biological_process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. [GOC:jl]
11 | GO:0043085 | 0.0148105282233209 | positive regulation of catalytic activity | biological_process | Any process that activates or increases the activity of an enzyme. [GOC:jl, GOC:tb]
11 | GO:0044093 | 0.0154758815826739 | positive regulation of molecular function | biological_process | Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. [GO:jl]
11 | GO:0009694 | 0.015659057020411 | [NAME] process | biological_process | The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid. [ISBN:[PHONE]]
11 | GO:0008105 | 0.016149664214979 | [NAME] | biological_process | Any process in which a protein is transported to, or maintained in, a specific location such that it is distributed asymmetrically. [GOC:ma]
11 | GO:0009200 | 0.016149664214979 | deoxyribonucleoside triphosphate metabolic process | biological_process | The chemical reactions and pathways involving a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
11 | GO:0009202 | 0.016149664214979 | deoxyribonucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
11 | GO:0010581 | 0.016149664214979 | regulation of starch biosynthetic process | biological_process | An process which modulate the frequency, rate or extent of starch biosynthesis, the chemical reactions and pathways resulting in the formation of starch. [GOC:tb]
11 | [NAME] | 0.016149664214979 | regulation of glucan biosynthetic process | biological_process | Any process that modulates the rate, frequency, or extent of glucan biosynthesis. Glucan biosynthetic processes are the chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues. [GOC:dph, GOC:tb]
11 | GO:0015904 | 0.016149664214979 | tetracycline transport | biological_process | The directed movement of tetracycline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). [CHEBI:27902, GOC:curators]
11 | GO:0032885 | 0.016149664214979 | regulation of polysaccharide biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of polysaccharides. [GOC:mah]
11 | GO:0042891 | 0.016149664214979 | antibiotic transport | biological_process | The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
11 | GO:0043433 | 0.016149664214979 | negative regulation of sequence-specific DNA binding transcription factor activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. [GOC:jl]
11 | GO:0045176 | 0.016149664214979 | apical protein localization | biological_process | Any process in which a protein is transported to, or maintained in, apical regions of the cell. [GOC:bf]
11 | GO:0051090 | 0.016149664214979 | regulation of sequence-specific DNA binding transcription factor activity | biological_process | Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. [GOC:ai]
11 | GO:0055047 | 0.016149664214979 | generative cell mitosis | biological_process | The process in which the generative cell divides by mitosis to form two haploid cells. These will subsequently differentiate into sperm cells. [GOC:mtg_plant]
11 | GO:1901998 | 0.016149664214979 | [NAME] | biological_process | The directed movement of a toxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:TermGenie, PMID:17118486]
11 | GO:0010817 | 0.0164129692051078 | regulation of hormone levels | biological_process | Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. [GOC:BHF, GOC:dph, GOC:tb]
11 | GO:0045934 | 0.0164129692051078 | negative regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
11 | GO:0009657 | 0.0168748278275014 | plastid organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid. [GOC:mah]
11 | GO:0010558 | 0.0174358245789897 | negative regulation of macromolecule biosynthetic process | biological_process | Any process that decreases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
11 | GO:0051172 | 0.0174358245789897 | negative regulation of nitrogen compound metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
11 | GO:2000113 | 0.0174358245789897 | negative regulation of cellular macromolecule biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular macromolecule biosynthetic process. [GOC:obol]
11 | GO:0052541 | 0.0179383391266815 | plant-type cell wall cellulose metabolic process | biological_process | The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall. [GOC:mah, ISBN:[PHONE]]
11 | GO:0043647 | 0.0184076011824811 | inositol phosphate metabolic process | biological_process | The chemical reactions and pathways involving inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. [CHEBI:24848, GOC:jl]
11 | GO:0044036 | 0.0191034606140734 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
11 | GO:0031327 | 0.0201892905632932 | negative regulation of cellular biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
11 | GO:0016444 | 0.0207101264987771 | somatic cell DNA recombination | biological_process | Recombination occurring within or between DNA molecules in somatic cells. [GOC:ma]
11 | GO:0009890 | 0.020774551156706 | negative regulation of biosynthetic process | biological_process | Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
11 | GO:0009108 | 0.0215144419233538 | coenzyme biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [GOC:ai]
11 | GO:0016144 | 0.0215144419233538 | S-glycoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
11 | GO:0019758 | 0.0215144419233538 | glycosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
11 | GO:0019761 | 0.0215144419233538 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
11 | GO:0010304 | 0.0236477700828462 | PSII associated light-harvesting complex II catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. [GOC:mah, PMID:16157880]
11 | GO:0031408 | 0.0236477700828462 | oxylipin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. [GOC:mah, PMID:11960741]
11 | GO:0008356 | 0.0267453014419216 | asymmetric cell division | biological_process | The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. [PMID:11672519]
11 | GO:0031407 | 0.0267453014419216 | oxylipin metabolic process | biological_process | The chemical reactions and pathways involving any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. [GOC:mah, PMID:11960741]
11 | GO:0009117 | 0.0291371743565792 | nucleotide metabolic process | biological_process | The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates). [GOC:ma]
11 | GO:0006073 | 0.0294930406960583 | cellular glucan metabolic process | biological_process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues. [ISBN:[PHONE]]
11 | GO:0044042 | 0.0294930406960583 | glucan metabolic process | biological_process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues. [GOC:jl]
11 | GO:0005975 | 0.0301305290291739 | carbohydrate metabolic process | biological_process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule. [GOC:mah, ISBN:[PHONE]]
11 | GO:0016128 | 0.0316509279120342 | phytosteroid metabolic process | biological_process | The chemical reactions and pathways involving phytosteroids, steroids of higher plants that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. [GOC:mah, ISBN:[PHONE]]
11 | GO:0016129 | 0.0316509279120342 | phytosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytosteroids, steroids that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. [GOC:go_curators, GOC:mah, ISBN:[PHONE]]
11 | GO:0016131 | 0.0316509279120342 | [NAME] process | biological_process | The chemical reactions and pathways involving brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
11 | [NAME] | 0.0316509279120342 | brassinosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
11 | GO:0000082 | 0.032041057772165 | G1/S transition of mitotic cell cycle | biological_process | The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of [NAME] kinase ([NAME]), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. [GOC:mtg_cell_cycle]
11 | GO:0006021 | 0.032041057772165 | inositol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. [CHEBI:24848, ISBN:[PHONE]]
11 | GO:0006072 | 0.032041057772165 | glycerol-3-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:go_curators, ISBN:[PHONE]]
11 | GO:0006471 | 0.032041057772165 | protein ADP-ribosylation | biological_process | The transfer, from NAD, of ADP-ribose to protein amino acids. [GOC:pr, RESID:AA0040, RESID:AA0168, RESID:AA0169, RESID:AA0231, RESID:AA0237, RESID:AA0295]
11 | GO:0006657 | 0.032041057772165 | CDP-choline pathway | biological_process | The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine. [ISBN:[PHONE], MetaCyc:PWY3O-450]
11 | GO:0008156 | 0.032041057772165 | negative regulation of DNA replication | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA replication. [GOC:go_curators]
11 | GO:0010069 | 0.032041057772165 | zygote asymmetric cytokinesis in embryo sac | biological_process | The division of the zygote in a plane perpendicular to the long axis of the embryo sac to produce a larger basal cell near the micropyle and a small terminal cell close to what was the central cell and is now the developing endosperm. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb, ISBN:[PHONE]]
11 | GO:0010070 | 0.032041057772165 | zygote asymmetric cell division | biological_process | The division of the zygote into two daughter cells that will adopt developmentally distinct potentials. [GOC:tb]
11 | GO:0010082 | 0.032041057772165 | regulation of root meristem growth | biological_process | Any process involved in maintaining the size and shape of a root meristem. [GOC:tb]
11 | GO:0010424 | 0.032041057772165 | DNA methylation on cytosine within a CG sequence | biological_process | The covalent transfer of a methyl group to C-5 or N-4 of a cytosine located within a CG sequence in a DNA molecule. [GOC:dph, GOC:tb, [NAME]]
11 | GO:0019287 | 0.032041057772165 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. [GOC:go_curators, MetaCyc:PWY-922]
11 | GO:0032876 | 0.032041057772165 | negative regulation of DNA endoreduplication | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA endoreduplication. [GOC:mah]
11 | GO:0032881 | 0.032041057772165 | regulation of polysaccharide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving polysaccharides. [GOC:mah]
11 | GO:0042754 | 0.032041057772165 | negative regulation of circadian rhythm | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
11 | GO:0051446 | 0.032041057772165 | positive regulation of meiotic cell cycle | biological_process | Any process that activates or increases the frequency, rate or extent of progression through the meiotic cell cycle. [GOC:ai, GOC:dph, GOC:tb]
11 | GO:0052646 | 0.032041057772165 | alditol phosphate metabolic process | biological_process | The chemical reactions and pathways involving alditol phosphates, any phosphorylated polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [CHEBI:22297, ISBN:[PHONE]]
11 | GO:2000104 | 0.032041057772165 | negative regulation of DNA-dependent DNA replication | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA-dependent DNA replication. [GOC:mah]
11 | GO:2000904 | 0.032041057772165 | regulation of starch metabolic process | biological_process | Any process that modulates the frequency, rate or extent of starch metabolic process. [GOC:obol]
11 | GO:0016143 | 0.0339279249566901 | S-glycoside metabolic process | biological_process | The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
11 | GO:0019757 | 0.0339279249566901 | glycosinolate metabolic process | biological_process | The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
11 | GO:0019760 | 0.0339279249566901 | glucosinolate metabolic process | biological_process | The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. [CHEBI:24279, GOC:curators]
11 | GO:0016126 | 0.0353572311442964 | sterol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators]
11 | GO:0016125 | 0.0368211272557045 | [NAME] process | biological_process | The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:[PHONE]]
11 | GO:0010207 | 0.0383196676444341 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
11 | GO:0009409 | 0.0403172220608975 | response to cold | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr]
11 | GO:0019748 | 0.0428667041787056 | secondary metabolic process | biological_process | The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients. [GOC:go_curators]
11 | GO:0048449 | 0.0430234779834469 | floral organ formation | biological_process | The process that gives rise to floral organs. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid, GOC:PO_curators, PO:0025395]
11 | GO:0045892 | 0.044208565260732 | negative regulation of transcription, DNA-dependent | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
11 | GO:0051253 | 0.044208565260732 | negative regulation of RNA metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
11 | GO:0009886 | 0.0442484915961157 | post-embryonic morphogenesis | biological_process | The process, occurring after embryonic development, by which anatomical structures are generated and organized. [GOC:go_curators]
11 | GO:0051302 | 0.0444324411806311 | regulation of cell division | biological_process | Any process that modulates the frequency, rate or extent of the physical partitioning and separation of a cell into daughter cells. [GOC:go_curators]
11 | GO:0042446 | 0.0446608470777714 | hormone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. [CHEBI:24621, GOC:jl]
11 | GO:0006355 | 0.0452915492453369 | regulation of transcription, DNA-dependent | biological_process | Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
11 | GO:0031324 | 0.0462500836504635 | negative regulation of cellular metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
11 | GO:0019252 | 0.046332915077653 | starch biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai]
11 | GO:0006656 | 0.0476782703706753 | phosphatidylcholine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. [ISBN:[PHONE]]
11 | [NAME] | 0.0476782703706753 | photosynthetic electron transport in photosystem II | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, Q) through a chain of electron transport molecules in the thylakoid membrane until they reach the ultimate electron acceptor of Photosystem II, which is plastocyanin (PC). The electron is then passed to the P700 chlorophyll a molecules of the reaction centre of photosystem I. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
11 | GO:0010216 | 0.0476782703706753 | maintenance of DNA methylation | biological_process | Any process involved in maintaining the methylation state of a nucleotide sequence. [PMID:11898023]
11 | GO:0015988 | 0.0476782703706753 | energy coupled proton transmembrane transport, against electrochemical gradient | biological_process | The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport. [GOC:mah]
11 | GO:0015991 | 0.0476782703706753 | ATP hydrolysis coupled proton transport | biological_process | The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:mah, GOC:vw]
11 | GO:0019464 | 0.0476782703706753 | glycine decarboxylation via glycine cleavage system | biological_process | The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. [MetaCyc:GLYCLEAV-PWY]
11 | GO:0032776 | 0.0476782703706753 | DNA methylation on cytosine | biological_process | The covalent transfer of a methyl group to C-5 or N-4 of cytosine in a DNA molecule. [GOC:pf]
11 | GO:0042549 | 0.0476782703706753 | photosystem II stabilization | biological_process | The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. [GOC:go_curators]
11 | GO:0045493 | 0.0476782703706753 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668]
11 | GO:0046470 | 0.0476782703706753 | phosphatidylcholine metabolic process | biological_process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. [ISBN:[PHONE]]
11 | GO:0052546 | 0.0483719354610397 | cell wall pectin metabolic process | biological_process | The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall. [GOC:ai]
11 | GO:2001141 | 0.0485559578456903 | regulation of RNA biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of RNA biosynthetic process. [GOC:dph]
11 | GO:0006694 | 0.0497810102454281 | steroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators]
12 | GO:0051567 | 1.4251093759225e-09 | histone H3-K9 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 9 of the histone. [GOC:ai]
12 | GO:0006306 | 6.97662159410986e-08 | DNA methylation | biological_process | The covalent transfer of a methyl group to either [NAME] of adenine or C-5 or N-4 of cytosine. [GOC:ems, ISBN:[PHONE]]
12 | GO:0000911 | 1.10102819341926e-07 | cytokinesis by cell plate formation | biological_process | The process of dividing the cytoplasm of a parent cell where a structure forms in the cytoplasm and grows until reaching the plasma membrane, thereby completely separating the cytoplasms of adjacent progeny cells. An example of this is found in Arabidopsis thaliana. [GOC:clt]
12 | GO:0008283 | 2.28856980484155e-06 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
12 | GO:0000724 | 3.40367220515678e-06 | double-strand break repair via homologous recombination | biological_process | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. [GOC:elh, PMID:10357855]
12 | GO:0006275 | 3.15660552559877e-05 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
12 | GO:0006270 | 6.48422043120261e-05 | DNA replication initiation | biological_process | The process in which DNA-dependent DNA replication is started; this involves the separation of a stretch of the DNA double helix, the recruitment of DNA polymerases and the initiation of polymerase action. [ISBN:071673706X, ISBN:[PHONE]]
12 | GO:0006268 | 0.000132120758339207 | DNA unwinding involved in replication | biological_process | The process in which interchain hydrogen bonds between two strands of DNA are broken or 'melted', generating unpaired template strands for DNA replication. [ISBN:071673706X, ISBN:[PHONE]]
12 | GO:0006084 | 0.000279677337042689 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
12 | GO:0000084 | 0.000365158909842756 | S phase of mitotic cell cycle | biological_process | S phase occurring as part of the mitotic cell cycle. S phase is the part of the cell cycle during which DNA synthesis takes place. A mitotic cell cycle is one which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. [GOC:dph, GOC:mah, ISBN:[PHONE]]
12 | GO:0007129 | 0.000399817003018904 | synapsis | biological_process | The cell cycle process in which the side by side pairing and physical juxtaposition of homologous chromosomes is created at the metaphase plate. [GOC:elh]
12 | GO:0015979 | 0.000544706828149017 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
12 | GO:0006271 | 0.00108169273997683 | DNA strand elongation involved in DNA replication | biological_process | The process in which a DNA strand is synthesized from template DNA during replication by the action of polymerases, which add nucleotides to the 3' end of the nascent DNA strand. [ISBN:071673706X, ISBN:[PHONE]]
12 | GO:0007067 | 0.0013901674545373 | mitosis | biological_process | A cell cycle process comprising the steps by which the nucleus of a eukaryotic cell divides; the process involves condensation of chromosomal DNA into a highly compacted form. Canonically, mitosis produces two daughter nuclei whose chromosome complement is identical to that of the mother cell. [GOC:dph, GOC:ma, GOC:mah, ISBN:[PHONE]]
12 | GO:0010075 | 0.00160992252918766 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
12 | GO:0006260 | 0.00186127580747761 | DNA replication | biological_process | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah]
12 | GO:0006269 | 0.00213620449334379 | DNA replication, synthesis of RNA primer | biological_process | The synthesis of a short RNA polymer, usually 4-15 nucleotides long, using one strand of unwound DNA as a template; the RNA then serves as a primer from which DNA polymerases extend synthesis. [PMID:11395402]
12 | GO:0048439 | 0.00306033822081245 | flower morphogenesis | biological_process | The process in which the anatomical structures of the flower are generated and organized. [GOC:go_curators]
12 | [NAME] | 0.00357254546094331 | cellular biogenic amine metabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
12 | GO:0000038 | 0.00384918027972187 | very long-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:hjd]
12 | GO:0048438 | 0.00408785909762736 | floral whorl development | biological_process | The process whose specific outcome is the progression of a floral whorl over time, from its formation to the mature structure. A floral whorl is a circular arrangement of parts of a flower arising from a stem of a plant. [GOC:dph, GOC:go_curators, GOC:PO_curators, GOC:tb, PO:0025023]
12 | GO:0010564 | 0.00470340505410881 | regulation of cell cycle process | biological_process | Any process that modulates a cellular process that is involved in the progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. [GOC:dph, GOC:tb]
12 | GO:0048449 | 0.00470340505410881 | floral organ formation | biological_process | The process that gives rise to floral organs. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid, GOC:PO_curators, PO:0025395]
12 | GO:0006091 | 0.00479307503369567 | generation of precursor metabolites and energy | biological_process | The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances. [GOC:jl]
12 | GO:0042446 | 0.00499205826205528 | hormone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. [CHEBI:24621, GOC:jl]
12 | GO:0031047 | 0.00573897451550316 | gene silencing by RNA | biological_process | Any process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:mah, GOC:tb, PMID:15020054]
12 | GO:0009909 | 0.00695745049075647 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
12 | GO:0048229 | 0.00829109975522044 | gametophyte development | biological_process | The process whose specific outcome is the progression of the gametophyte over time, from its formation to the mature structure. The gametophyte is the gamete-producing individual or phase in the life cycle having alternation of generations. An example of this process is found in Arabidopsis thaliana. [GOC:jid, PO:0009004]
12 | GO:0006346 | 0.00895952659964487 | methylation-dependent chromatin silencing | biological_process | Repression of transcription by methylation of DNA, leading to the formation of heterochromatin. [GOC:mah]
12 | GO:0007062 | 0.00968593769708571 | sister chromatid cohesion | biological_process | The cell cycle process in which the sister chromatids of a replicated chromosome are associated with each other. [GOC:jh, GOC:mah, ISBN:[PHONE]]
12 | GO:0045229 | 0.0101396481068912 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
12 | GO:0010389 | 0.0121802659014228 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
12 | GO:0006568 | 0.0129846260593691 | tryptophan metabolic process | biological_process | The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:[PHONE]]
12 | GO:0006586 | 0.0129846260593691 | indolalkylamine metabolic process | biological_process | The chemical reactions and pathways involving indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
12 | GO:0000086 | 0.0130949149381185 | G2/M transition of mitotic cell cycle | biological_process | The mitotic cell cycle transition by which a cell in G2 commits to M phase. The process begins when the kinase activity of M cyclin/CDK complex reaches a threshold high enough for the cell cycle to proceed. This is accomplished by activating a positive feedback loop that results in the accumulation of unphosphorylated and active M cyclin/CDK complex. [GOC:mtg_cell_cycle]
12 | GO:0048481 | 0.014052304583956 | ovule development | biological_process | The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. [GOC:tb]
12 | GO:0007389 | 0.0141885130067253 | pattern specification process | biological_process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
12 | GO:0046165 | 0.0141885130067253 | alcohol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, GOC:ai]
12 | GO:0048609 | 0.0141885130067253 | multicellular organismal reproductive process | biological_process | The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. [GOC:dph, GOC:jid, GOC:tb]
12 | GO:0019684 | 0.014732900255308 | photosynthesis, light reaction | biological_process | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. [http://www.arabidopsis.org]
12 | [NAME] | 0.0148569729643564 | postreplication repair | biological_process | The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication. [GOC:elh]
12 | [NAME] | 0.0150530674054002 | plant-type ovary development | biological_process | The process whose specific outcome is the progression of an ovary that produces an ovule over time, from its formation to the mature structure. The ovary is the enlarged basal portion of a carpel and matures into a fruit. An ovule is the multicellular structure that gives rise to and contains the female reproductive cells, and develops into a seed. [GOC:bf, GOC:tb, ISBN:[PHONE]]
12 | GO:0044283 | 0.01511408750763 | small molecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:pde, GOC:vw]
12 | GO:0032504 | 0.0158662774706123 | multicellular organism reproduction | biological_process | The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. [GOC:isa_complete, GOC:jid]
12 | GO:1901990 | 0.0160978024522875 | regulation of mitotic cell cycle phase transition | biological_process | Any process that modulates the frequency, rate or extent of mitotic cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
12 | GO:0007017 | 0.0164556738267947 | microtubule-based process | biological_process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. [GOC:mah]
12 | GO:1901987 | 0.0171870751622275 | regulation of cell cycle phase transition | biological_process | Any process that modulates the frequency, rate or extent of cell cycle phase transition. [GOC:mtg_cell_cycle, GOC:TermGenie, PMID:22841721]
12 | GO:0009555 | 0.0172166005314875 | pollen development | biological_process | The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb]
12 | GO:1901617 | 0.0175701119466678 | organic hydroxy compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of organic hydroxy compound. [GOC:pr, GOC:TermGenie]
12 | GO:0044702 | 0.0183170881606345 | single organism reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals, involving a single organism. [GOC:jl]
12 | GO:0044772 | 0.0183214173198843 | mitotic cell cycle phase transition | biological_process | The cell cycle process by which a cell commits to entering the next mitotic cell cycle phase. [GOC:mtg_cell_cycle]
12 | GO:0000028 | 0.0191877198593828 | ribosomal small subunit assembly | biological_process | The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit. [GOC:jl]
12 | GO:0000731 | 0.0191877198593828 | DNA synthesis involved in DNA repair | biological_process | Synthesis of DNA that proceeds from the broken 3' single-strand DNA end uses the homologous intact duplex as the template. [PMID:10357855]
12 | GO:0006273 | 0.0191877198593828 | lagging strand elongation | biological_process | The synthesis of DNA from a template strand in a net 3' to 5' direction. Lagging strand DNA elongation proceeds by discontinuous synthesis of short stretches of DNA, known as Okazaki fragments, from RNA primers; these fragments are then joined by DNA ligase. Although each segment of nascent DNA is synthesized in the 5' to 3' direction, the overall direction of lagging strand synthesis is 3' to 5', mirroring the progress of the replication fork. [ISBN:071673706X, ISBN:[PHONE]]
12 | GO:0006287 | 0.0191877198593828 | base-excision repair, gap-filling | biological_process | Repair of the damaged strand by the combined action of an apurinic endouclease that degrades a few bases on the damaged strand and a polymerase that synthesizes a 'patch' in the 5' to 3' direction, using the undamaged strand as a template. [ISBN:[PHONE]]
12 | GO:0006297 | 0.0191877198593828 | nucleotide-excision repair, DNA gap filling | biological_process | Repair of the gap in the DNA helix by DNA polymerase and DNA ligase after the portion of the strand containing the lesion has been removed by pyrimidine-dimer repair enzymes. [ISBN:[PHONE]]
12 | GO:0006407 | 0.0191877198593828 | rRNA export from nucleus | biological_process | The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins. [GOC:ma, GOC:mah]
12 | GO:0009445 | 0.0191877198593828 | putrescine metabolic process | biological_process | The chemical reactions and pathways involving putrescine, 1,4-diaminobutane; putrescine can be formed by decarboxylation of ornithine and is the metabolic precursor of spermidine and spermine. [GOC:ai]
12 | GO:0009446 | 0.0191877198593828 | putrescine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of putrescine, 1,4-diaminobutane; putrescine can be synthesized from arginine or ornithine and is the metabolic precursor of spermidine and spermine. [GOC:go_curators, ISBN:[PHONE]]
12 | GO:0009953 | 0.0191877198593828 | dorsal/ventral pattern formation | biological_process | The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. [GOC:dph, GOC:go_curators, GOC:isa_complete, GOC:tb]
12 | GO:0018871 | 0.0191877198593828 | 1-aminocyclopropane-1-carboxylate metabolic process | biological_process | The chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene ([NAME]), a fruit-ripening hormone in plants. [UM-BBD_pathwayID:acp]
12 | GO:0019985 | 0.0191877198593828 | translesion synthesis | biological_process | The replication of damaged DNA by synthesis across a lesion in the template strand; a specialized DNA polymerase or replication complex inserts a defined nucleotide across from the lesion which allows DNA synthesis to continue beyond the lesion. This process can be mutagenic depending on the damaged nucleotide and the inserted nucleotide. [GOC:elh, PMID:10535901]
12 | GO:0032352 | 0.0191877198593828 | positive regulation of hormone metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving any hormone. [GOC:mah]
12 | GO:0033240 | 0.0191877198593828 | positive regulation of cellular amine metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amines. [GOC:mah]
12 | GO:0033567 | 0.0191877198593828 | DNA replication, Okazaki fragment processing | biological_process | The DNA metabolic process, occurring during lagging strand synthesis, by which RNA primers are removed from Okazaki fragments, the resulting gaps filled by DNA polymerization, and the ends ligated to form a continuous strand. [GOC:mah, ISBN:[PHONE]]
12 | GO:0042218 | 0.0191877198593828 | 1-aminocyclopropane-1-carboxylate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of 1-aminocyclopropane-1-carboxylate, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene ([NAME]), a fruit-ripening hormone in plants. [GOC:go_curators]
12 | GO:0042255 | 0.0191877198593828 | ribosome assembly | biological_process | The aggregation, arrangement and bonding together of the mature ribosome and of its subunits. [GOC:ma]
12 | GO:0042276 | 0.0191877198593828 | error-prone translesion synthesis | biological_process | The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication by using a specialized DNA polymerase or replication complex to insert a defined nucleotide across the lesion. This process does not remove the replication-blocking lesions and causes an increase in the endogenous mutation level. For example, in E. coli, a low fidelity DNA polymerase, pol V, copies lesions that block replication fork progress. This produces mutations specifically targeted to DNA template damage sites, but it can also produce mutations at undamaged sites. [GOC:elh, GOC:jl, PMID:11485998]
12 | GO:0043137 | 0.0191877198593828 | DNA replication, removal of RNA primer | biological_process | Removal of the Okazaki RNA primer from the lagging strand of replicating DNA, by a combination of the actions of DNA polymerase, DNA helicase and an endonuclease. [GOC:jl, PMID:12424238]
12 | GO:0043988 | 0.0191877198593828 | histone H3-S28 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a serine residue at position 28 of the histone. [GOC:jl]
12 | GO:0045004 | 0.0191877198593828 | DNA replication proofreading | biological_process | Correction of replication errors by DNA polymerase using a 3'-5' exonuclease activity. [GOC:ai]
12 | GO:0045005 | 0.0191877198593828 | maintenance of fidelity involved in DNA-dependent DNA replication | biological_process | A DNA metabolic process that prevents or corrects errors to ensure that DNA is replicated accurately. Errors can be corrected either by intrinsic DNA polymerase proofreading activity or via mismatch repair. [GOC:mah, GOC:vw]
12 | GO:0045764 | 0.0191877198593828 | positive regulation of cellular amino acid metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amino acid. [GOC:go_curators]
12 | GO:0048262 | 0.0191877198593828 | determination of dorsal/ventral asymmetry | biological_process | Determination of asymmetry from the dorsal to the ventral side; as, the dorsoventral axis. [GOC:jid]
12 | GO:0048263 | 0.0191877198593828 | determination of dorsal identity | biological_process | Determination of the identity of part of an organism or organ where those parts are of the type that occur in the dorsal region. Identity is considered to be the aggregate of characteristics by which a structure is recognized. [GOC:jid]
12 | GO:0051029 | 0.0191877198593828 | rRNA transport | biological_process | The directed movement of rRNA, ribosomal ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
12 | GO:0055047 | 0.0191877198593828 | generative cell mitosis | biological_process | The process in which the generative cell divides by mitosis to form two haploid cells. These will subsequently differentiate into sperm cells. [GOC:mtg_plant]
12 | GO:0060964 | 0.0191877198593828 | regulation of gene silencing by miRNA | biological_process | Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [GOC:dph, GOC:tb]
12 | GO:0060966 | 0.0191877198593828 | regulation of gene silencing by RNA | biological_process | Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:tb]
12 | GO:0080088 | 0.0191877198593828 | spermidine hydroxycinnamate conjugate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates. [PMID:19077165]
12 | GO:0080121 | 0.0191877198593828 | AMP transport | biological_process | The directed movement of AMP, adenosine monophosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [PMID:18923018]
12 | GO:0090355 | 0.0191877198593828 | positive regulation of auxin metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth. [GOC:tb]
12 | GO:0090358 | 0.0191877198593828 | positive regulation of tryptophan metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [GOC:tb]
12 | GO:0044770 | 0.0195013270687039 | cell cycle phase transition | biological_process | The cell cycle process by which a cell commits to entering the next cell cycle phase. [GOC:mtg_cell_cycle]
12 | GO:0006261 | 0.0202441634587806 | DNA-dependent DNA replication | biological_process | A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. [GOC:mah, ISBN:[PHONE]]
12 | GO:0046173 | 0.0209486297152694 | polyol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. [CHEBI:26191]
12 | GO:0022412 | 0.0233189402510444 | cellular process involved in reproduction in multicellular organism | biological_process | A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular organism. [GOC:isa_complete]
12 | GO:0071555 | 0.0239385132418266 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
12 | GO:0042546 | 0.0245146304316719 | cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:[PHONE]]
12 | GO:0031048 | 0.0260994811305618 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
12 | GO:0044085 | 0.0266661632893092 | cellular component biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. [GOC:jl, GOC:mah]
12 | GO:0016444 | 0.0285809407055954 | somatic cell DNA recombination | biological_process | Recombination occurring within or between DNA molecules in somatic cells. [GOC:ma]
12 | GO:0006066 | 0.0298811096044271 | alcohol metabolic process | biological_process | The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, ISBN:[PHONE]]
12 | GO:0042335 | 0.0325705282161158 | cuticle development | biological_process | The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:[PHONE]]
12 | GO:0007276 | 0.0355969836549505 | gamete generation | biological_process | The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell. [GOC:ems, GOC:mtg_sensu]
12 | GO:0007346 | 0.0355969836549505 | regulation of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progress through the mitotic cell cycle. [GOC:dph, GOC:go_curators, GOC:tb]
12 | GO:0048440 | 0.0355969836549505 | carpel development | biological_process | The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style. [GOC:go_curators]
12 | GO:0007020 | 0.0357074979514237 | microtubule nucleation | biological_process | The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. [NAME] nucleation usually occurs from a specific site within a cell. [ISBN:[PHONE]]
12 | GO:0009310 | 0.0357074979514237 | amine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
12 | [NAME] | 0.0357074979514237 | cellular biogenic amine catabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:go_curators, GOC:jl, ISBN:[PHONE]]
12 | GO:0042430 | 0.0357074979514237 | indole-containing compound metabolic process | biological_process | The chemical reactions and pathways involving compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl, GOC:mah]
12 | GO:0000723 | 0.0367642403183113 | telomere maintenance | biological_process | Any process that contributes to the maintenance of proper telomeric length and structure by affecting and monitoring the activity of telomeric proteins and the length of telomeric DNA. These processes includes those that shorten and lengthen the telomeric DNA sequences. [GOC:elh, PMID:11092831]
12 | GO:0008356 | 0.0367642403183113 | asymmetric cell division | biological_process | The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. [PMID:11672519]
12 | GO:0032200 | 0.0367642403183113 | telomere organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of telomeres, terminal regions of a linear chromosome that include the telomeric DNA repeats and associated proteins. [GOC:dph, GOC:jl, GOC:mah]
12 | GO:0060249 | 0.0367642403183113 | anatomical structure homeostasis | biological_process | A homeostatic process involved in the maintenance of an internal steady state within a defined anatomical structure of an organism, including control of cellular proliferation and death and control of metabolic function. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. [GOC:dph]
12 | GO:0007010 | 0.0369313779170425 | cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah]
12 | GO:0000226 | 0.0371223845432254 | microtubule cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
12 | GO:0000278 | 0.0371223845432254 | mitotic cell cycle | biological_process | Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent. [GOC:mah, ISBN:[PHONE], Reactome:69278]
12 | GO:0000076 | 0.038010280808588 | DNA replication checkpoint | biological_process | A cell cycle checkpoint that prevents the initiation of nuclear division until DNA replication is complete, thereby ensuring that progeny inherit a full complement of the genome. [GOC:curators, GOC:rn, PMID:11728327, PMID:12537518]
12 | GO:0000447 | 0.038010280808588 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410]
12 | GO:0000460 | 0.038010280808588 | maturation of 5.8S rRNA | biological_process | Any process involved in the maturation of a precursor 5.8S ribosomal RNA (rRNA) molecule into a mature 5.8S rRNA molecule. [GOC:curators]
12 | GO:0000461 | 0.038010280808588 | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage at the 3'-end of the SSU-rRNA from an originally tricistronic rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. [GOC:krc, PMID:10690410]
12 | [NAME] | 0.038010280808588 | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Any process involved in the maturation of an rRNA molecule originally produced as part of a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410]
12 | GO:0000479 | 0.038010280808588 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [NAME] ribosomal RNA transcripts with three genes, in this order, are produced in the nuclei of many eukaryotic species, including S. cerevisiae. [GOC:curators, PMID:10690410]
12 | GO:0006021 | 0.038010280808588 | inositol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. [CHEBI:24848, ISBN:[PHONE]]
12 | GO:0010082 | 0.038010280808588 | regulation of root meristem growth | biological_process | Any process involved in maintaining the size and shape of a root meristem. [GOC:tb]
12 | GO:0015866 | 0.038010280808588 | ADP transport | biological_process | The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
12 | GO:0018105 | 0.038010280808588 | peptidyl-serine phosphorylation | biological_process | The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037]
12 | GO:0018209 | 0.038010280808588 | peptidyl-serine modification | biological_process | The modification of peptidyl-serine. [GOC:go_curators]
12 | GO:0019287 | 0.038010280808588 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. [GOC:go_curators, MetaCyc:PWY-922]
12 | GO:0031125 | 0.038010280808588 | rRNA 3'-end processing | biological_process | Any process involved in forming the mature 3' end of an rRNA molecule. [GOC:mah]
12 | GO:0035404 | 0.038010280808588 | histone-serine phosphorylation | biological_process | The modification of histones by addition of a phosphate group to a serine residue. [GOC:bf]
12 | GO:0043987 | 0.038010280808588 | histone H3-S10 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone. [GOC:jl]
12 | GO:0051026 | 0.038010280808588 | chiasma assembly | biological_process | The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids. [http://www.onelook.com]
12 | [NAME] | 0.038010280808588 | regulation of posttranscriptional gene silencing | biological_process | Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
12 | GO:0080060 | 0.038010280808588 | integument development | biological_process | The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex. [NAME], PO:0020021]
12 | GO:0090357 | 0.038010280808588 | regulation of tryptophan metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [GOC:tb]
12 | GO:0007131 | 0.0381568770724181 | reciprocal meiotic recombination | biological_process | The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779]
12 | GO:0035825 | 0.0381568770724181 | reciprocal DNA recombination | biological_process | A DNA recombination process that results in the equal exchange of genetic material between the recombining DNA molecules. [GOC:mah, PMID:11139492, PMID:17304215]
12 | GO:0044711 | 0.0385361412374663 | single-organism biosynthetic process | biological_process | A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. [GOC:jl]
12 | GO:0034622 | 0.0386579345676345 | cellular macromolecular complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of macromolecules to form a complex, carried out at the cellular level. [GOC:mah]
12 | GO:0016572 | 0.0406900520037541 | histone phosphorylation | biological_process | The modification of histones by addition of phosphate groups. [GOC:ai]
12 | GO:1901264 | 0.0411529149901131 | carbohydrate derivative transport | biological_process | The directed movement of a carbohydrate derivative into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:bf, GOC:jl, GOC:TermGenie]
12 | GO:0032535 | 0.0429056998285128 | regulation of cellular component size | biological_process | A process that modulates the size of a cellular component. [GOC:mah]
12 | GO:0048467 | 0.0429056998285128 | gynoecium development | biological_process | The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower. [GOC:go_curators, PO:0008062]
12 | GO:0090066 | 0.0429056998285128 | regulation of anatomical structure size | biological_process | Any process that modulates the size of an anatomical structure. [GOC:dph, GOC:tb]
12 | GO:0072330 | 0.0438081539291184 | monocarboxylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
12 | GO:0009698 | 0.044855687760897 | phenylpropanoid metabolic process | biological_process | The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid. [GOC:jl]
12 | [NAME] | 0.0454306526982409 | cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah]
12 | GO:0010332 | 0.0457276615164382 | response to gamma radiation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation ([NAME]) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as [NAME] having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum. [GOC:tair_curators, Wikipedia:Gamma_ray]
12 | GO:0034754 | 0.0460050133528483 | cellular hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells. [GOC:mah]
12 | GO:0046148 | 0.0461069749932166 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
12 | GO:1901566 | 0.0462290988030429 | organonitrogen compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of organonitrogen compound. [GOC:pr, GOC:TermGenie]
12 | GO:0030154 | 0.046475901693792 | cell differentiation | biological_process | The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:[PHONE]]
12 | GO:0010026 | 0.0468547727228489 | trichome differentiation | biological_process | The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, PMID:9367433]
12 | GO:0009913 | 0.0480374252907567 | epidermal cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis. [GOC:dph, GOC:go_curators, GOC:mtg_sensu, GOC:sdb_2009, GOC:tb]
12 | GO:0030855 | 0.0480374252907567 | epithelial cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium. [GOC:ecd, PMID:11839751]
12 | GO:0060429 | 0.0480374252907567 | epithelium development | biological_process | The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. [GOC:dph, GOC:mtg_lung]
12 | GO:0009790 | 0.048122128683754 | embryo development | biological_process | The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu]
12 | GO:0016128 | 0.0487852447195779 | phytosteroid metabolic process | biological_process | The chemical reactions and pathways involving phytosteroids, steroids of higher plants that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. [GOC:mah, ISBN:[PHONE]]
12 | GO:0016129 | 0.0487852447195779 | phytosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytosteroids, steroids that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. [GOC:go_curators, GOC:mah, ISBN:[PHONE]]
12 | GO:0016131 | 0.0487852447195779 | [NAME] process | biological_process | The chemical reactions and pathways involving brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
12 | [NAME] | 0.0487852447195779 | brassinosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
12 | GO:0071669 | 0.0489027892579524 | plant-type cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. [GOC:ecd, GOC:mah]
12 | GO:1901605 | 0.0491465042509081 | alpha-amino acid metabolic process | biological_process | The chemical reactions and pathways involving an alpha-amino acid. [GOC:TermGenie]
12 | GO:0008544 | 0.0492850535039456 | epidermis development | biological_process | The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species. [GOC:go_curators, UBERON:0001003]
12 | GO:0042440 | 0.0492850535039456 | pigment metabolic process | biological_process | The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:jl, ISBN:[PHONE]]
13 | GO:0010075 | 4.59626119962398e-07 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
13 | GO:0008361 | 1.43307567361865e-05 | regulation of cell size | biological_process | Any process that modulates the size of a cell. [GOC:go_curators]
13 | GO:0000272 | 5.61081296783566e-05 | polysaccharide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
13 | GO:0008356 | 6.12123145156265e-05 | asymmetric cell division | biological_process | The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. [PMID:11672519]
13 | GO:0048767 | 0.000137954419154386 | [NAME] elongation | biological_process | The process in which the root hair grows longer. [GOC:jid, PMID:12468740]
13 | GO:0007169 | 0.000365569872061398 | [NAME] receptor [NAME] signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:ceb, GOC:signaling]
13 | GO:0009926 | 0.000406696021336907 | auxin polar transport | biological_process | The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally. [GOC:sm]
13 | GO:0010050 | 0.000450986466117031 | vegetative phase change | biological_process | Any process involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development. [GOC:tb]
13 | GO:0010215 | 0.000595250624350084 | cellulose microfibril organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730]
13 | GO:0009825 | 0.000952115641884085 | multidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes. [ISBN:[PHONE]]
13 | GO:0043481 | 0.000952115641884085 | anthocyanin accumulation in tissues in response to UV light | biological_process | The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
13 | GO:0048438 | 0.00219229938465423 | floral whorl development | biological_process | The process whose specific outcome is the progression of a floral whorl over time, from its formation to the mature structure. A floral whorl is a circular arrangement of parts of a flower arising from a stem of a plant. [GOC:dph, GOC:go_curators, GOC:PO_curators, GOC:tb, PO:0025023]
13 | GO:0009832 | 0.00324427438031734 | plant-type cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu]
13 | GO:0071555 | 0.00403313206021484 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
13 | GO:0005982 | 0.00459782882110328 | starch metabolic process | biological_process | The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose. [ISBN:[PHONE]]
13 | GO:0003002 | 0.00734903510749095 | regionalization | biological_process | The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. [GOC:dph, GOC:isa_complete]
13 | GO:0009855 | 0.00801381624629426 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
13 | GO:0009932 | 0.00887307831230243 | cell tip growth | biological_process | Growth that occurs specifically at the tip of a cell. [GOC:jid]
13 | GO:0030029 | 0.00928582575596616 | [NAME]-based process | biological_process | Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins. [GOC:mah]
13 | GO:0007389 | 0.00950502039905992 | pattern specification process | biological_process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
13 | GO:0048443 | 0.0134141157920096 | stamen development | biological_process | The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure. [GOC:go_curators]
13 | GO:0048466 | 0.0134141157920096 | androecium development | biological_process | The process whose specific outcome is the progression of the androecium over time, from its formation to the mature structure. [GOC:go_curators]
13 | GO:0010468 | 0.0138942825550629 | regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
13 | GO:0010090 | 0.0141276658470924 | trichome morphogenesis | biological_process | The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
13 | GO:0006110 | 0.0142308922290902 | regulation of glycolysis | biological_process | Any process that modulates the frequency, rate or extent of glycolysis. [GOC:go_curators]
13 | GO:0010906 | 0.0142308922290902 | regulation of glucose metabolic process | biological_process | Any process that modulates the rate, frequency or extent of glucose metabolism. Glucose metabolic processes are the chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. [GOC:BHF, GOC:tb]
13 | GO:0031936 | 0.0142308922290902 | negative regulation of chromatin silencing | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing. [GOC:mah]
13 | GO:0043470 | 0.0142308922290902 | regulation of carbohydrate catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of carbohydrates. [GOC:mlg]
13 | GO:0043471 | 0.0142308922290902 | regulation of cellular carbohydrate catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of carbohydrates, carried out by individual cells. [GOC:jl]
13 | GO:0045815 | 0.0142308922290902 | positive regulation of gene expression, epigenetic | biological_process | Any epigenetic process that activates or increases the rate of gene expression. [GOC:go_curators]
13 | GO:0060969 | 0.0142308922290902 | negative regulation of gene silencing | biological_process | Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. [GOC:dph, GOC:tb]
13 | GO:0097359 | 0.0142308922290902 | UDP-glucosylation | biological_process | The covalent attachment of a UDP-glucose residue to a substrate molecule. [GOC:al]
13 | GO:1901957 | 0.0142308922290902 | regulation of cutin biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of cutin biosynthetic process. [GOC:tb, GOC:TermGenie, PMID:23243127]
13 | GO:1901959 | 0.0142308922290902 | positive regulation of cutin biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of cutin biosynthetic process. [GOC:tb, GOC:TermGenie, PMID:23243127]
13 | GO:0009616 | 0.0152718530214197 | virus induced gene silencing | biological_process | Specific posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes. This silencing is triggered by viral infection, and occurs through a specific decrease in the level of mRNA of both host and viral genes. [GOC:jl]
13 | GO:0052018 | 0.0152718530214197 | modulation by symbiont of RNA levels in host | biological_process | The alteration by an organism of the levels of RNA in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
13 | [NAME] | 0.0152718530214197 | modulation of RNA levels in other organism involved in symbiotic interaction | biological_process | The alteration by an organism of the levels of RNA in a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
13 | GO:0010026 | 0.0180558244096834 | trichome differentiation | biological_process | The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, PMID:9367433]
13 | GO:0042335 | 0.0186436664224986 | cuticle development | biological_process | The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:[PHONE]]
13 | GO:0010051 | 0.018836510469567 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
13 | GO:0035821 | 0.018836510469567 | modification of morphology or physiology of other organism | biological_process | The process in which an organism effects a change in the structure or processes of a second organism. [GOC:bf]
13 | GO:0044003 | 0.018836510469567 | modification by symbiont of host morphology or physiology | biological_process | The process in which an organism effects a change in the structure or processes of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:cc]
13 | GO:0051817 | 0.018836510469567 | modification of morphology or physiology of other organism involved in symbiotic interaction | biological_process | The process in which an organism effects a change in the structure or processes of a second organism, where the two organisms are in a symbiotic interaction. [GOC:cc]
13 | GO:0010267 | 0.0201185850604819 | production of ta-siRNAs involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs. [GOC:tb, PMID:16129836]
13 | GO:0000904 | 0.0212577825811389 | cell morphogenesis involved in differentiation | biological_process | The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. [GOC:go_curators]
13 | GO:0009746 | 0.0246026672097611 | response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:jl]
13 | GO:0034284 | 0.0256407284630884 | response to monosaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. [GOC:mah]
13 | GO:0044403 | 0.0272357583984602 | symbiosis, encompassing mutualism through parasitism | biological_process | An interaction between two organisms living together in more or less intimate association. The term host is usually used for the larger (macro) of the two members of a symbiosis. The smaller (micro) member is called the symbiont organism. Microscopic symbionts are often referred to as endosymbionts. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. [GOC:cc, http://www.free-definition.com]
13 | GO:0051701 | 0.0272357583984602 | interaction with host | biological_process | An interaction between two organisms living together in more or less intimate association. The term host is used for the larger (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism. [GOC:cc]
13 | GO:0000255 | 0.0282615096272999 | allantoin metabolic process | biological_process | The chemical reactions and pathways involving allantoin, (2,5-dioxo-4-imidazolidinyl)urea, an intermediate or end product of purine catabolism. [GOC:mah, ISBN:[PHONE]]
13 | GO:0000256 | 0.0282615096272999 | allantoin catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. [GOC:mah, ISBN:[PHONE]]
13 | GO:0006011 | 0.0282615096272999 | UDP-glucose metabolic process | biological_process | The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai]
13 | GO:0010052 | 0.0282615096272999 | guard cell differentiation | biological_process | The process in which a guard mother cell acquires the specialized features of a guard cell. [GOC:[NAME], GOC:tb]
13 | GO:0010160 | 0.0282615096272999 | formation of organ boundary | biological_process | The regionalization process that specifies organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues. [GOC:dph, GOC:isa_complete, PMID:9611175]
13 | GO:0010199 | 0.0282615096272999 | organ boundary specification between lateral organs and the meristem | biological_process | The process in which boundaries between lateral organs and the meristem is established and maintained. [PMID:12068116]
13 | GO:0010441 | 0.0282615096272999 | guard cell development | biological_process | The process whose specific outcome is the progression of the guard cell over time, from its formation to the mature structure. [GOC:tb]
13 | GO:0010442 | 0.0282615096272999 | guard cell morphogenesis | biological_process | Generation and organization of the polarized cell that is capable of turgor driven movement. [GOC:[NAME], GOC:tb]
13 | GO:0010599 | 0.0282615096272999 | production of lsiRNA involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form lsiRNA (long small interfering RNA), a class of siRNAs 30 to 40 nt in length. lsiRNAs are induced by pathogen infection or under specific growth conditions. [PMID:18003861]
13 | GO:0015712 | 0.0282615096272999 | hexose phosphate transport | biological_process | The directed movement of hexose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
13 | GO:0015760 | 0.0282615096272999 | glucose-6-phosphate transport | biological_process | The directed movement of glucose-6-phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
13 | GO:0042754 | 0.0282615096272999 | negative regulation of circadian rhythm | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
13 | GO:0043605 | 0.0282615096272999 | cellular amide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group. [CHEBI:32988]
13 | GO:0048859 | 0.0282615096272999 | formation of anatomical boundary | biological_process | The process in which the limits of an anatomical structure are generated. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. [GO_REF:0000021, GOC:mtg_15jun06]
13 | GO:0080060 | 0.0282615096272999 | integument development | biological_process | The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex. [NAME], PO:0020021]
13 | GO:0090436 | 0.0282615096272999 | leaf pavement cell development | biological_process | The process whose specific outcome is the progression of an leaf pavement cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a leaf pavement cell fate. [GOC:tb]
13 | GO:0044419 | 0.0288004309881032 | interspecies interaction between organisms | biological_process | Any process in which an organism has an effect on an organism of a different species. [GOC:cc]
13 | GO:0006084 | 0.0304120020215803 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
13 | GO:0040029 | 0.0314013862504532 | regulation of gene expression, epigenetic | biological_process | Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence. [PMID:10521337, PMID:11498582]
13 | GO:0006637 | 0.032070337947961 | acyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [ISBN:[PHONE]]
13 | GO:0035383 | 0.032070337947961 | [NAME] process | biological_process | The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
13 | [NAME] | 0.0322242885592308 | [NAME] process | biological_process | The chemical reactions and pathways involving lignins, a class of polymers of phenylpropanoid units. [GOC:lr, GOC:yl]
13 | GO:0035196 | 0.0337752791212823 | production of miRNAs involved in gene silencing by miRNA | biological_process | Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein. [GOC:dph, GOC:tb, PMID:15066275, PMID:15066283]
13 | GO:0006928 | 0.0352922968353521 | cellular component movement | biological_process | The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore. [GOC:dgh, GOC:dph, GOC:jl, GOC:mlg]
13 | GO:0030048 | 0.0352922968353521 | [NAME]-based movement | biological_process | Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins. [GOC:BHF, GOC:mah]
13 | GO:0060255 | 0.037020832410119 | regulation of macromolecule metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
13 | GO:0030422 | 0.0391677675778601 | production of siRNA involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. [GOC:mah, PMID:11524674]
13 | GO:0009643 | 0.0420946391289237 | photosynthetic acclimation | biological_process | A response to light intensity in which exposure to medium-intensity light results in increased tolerance to high-intensity light. [GOC:mah, PMID:11069694]
13 | GO:0010158 | 0.0420946391289237 | abaxial cell fate specification | biological_process | The process in which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. [GOC:mg]
13 | [NAME] | 0.0420946391289237 | triose phosphate transport | biological_process | The directed movement of triose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
13 | GO:0015988 | 0.0420946391289237 | energy coupled proton transmembrane transport, against electrochemical gradient | biological_process | The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport. [GOC:mah]
13 | GO:0015991 | 0.0420946391289237 | ATP hydrolysis coupled proton transport | biological_process | The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:mah, GOC:vw]
13 | GO:0031935 | 0.0420946391289237 | regulation of chromatin silencing | biological_process | Any process that affects the rate, extent or location of chromatin silencing. [GOC:mah]
13 | GO:0035436 | 0.0420946391289237 | triose phosphate transmembrane transport | biological_process | The directed movement of triose phosphate across a membrane by means of some agent such as a transporter or pore. Triose phosphate is any organic three carbon compound phosphate ester. [GOC:bf, ISBN:[PHONE]]
13 | GO:0000271 | 0.0421190928859312 | polysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
13 | GO:0031050 | 0.0429917763201071 | dsRNA fragmentation | biological_process | Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function. [GOC:ns]
13 | GO:0035195 | 0.0429917763201071 | gene silencing by miRNA | biological_process | Downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [PMID:14744438, PMID:15066275, PMID:15066283]
13 | GO:0043331 | 0.0429917763201071 | response to dsRNA | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. [GOC:jl]
13 | GO:0070918 | 0.0429917763201071 | production of small RNA involved in gene silencing by RNA | biological_process | The process in which a double-stranded RNA precursor is processed into short (20-30 nt) fragments. [NAME] cleavage is catalyzed by a Dicer endonuclease. [GOC:mah, PMID:19239886]
13 | GO:0071359 | 0.0429917763201071 | cellular response to dsRNA | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. [GOC:mah]
13 | [NAME] | 0.0454927015058677 | response to carbohydrate stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. [GOC:jl]
13 | GO:0016458 | 0.0454927015058677 | gene silencing | biological_process | Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. [GOC:dph, GOC:jid, GOC:tb]
13 | GO:0051607 | 0.0469963851920306 | defense response to virus | biological_process | Reactions triggered in response to the presence of a virus that act to protect the cell or organism. [GOC:ai]
13 | [NAME] | 0.0473513418517245 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
13 | GO:0010150 | 0.0486127636154163 | leaf senescence | biological_process | The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. [ISBN:[PHONE]]
13 | GO:0009744 | 0.0488699377732151 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
13 | GO:0034285 | 0.0488699377732151 | response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:sart]
14 | GO:0010417 | 0.000387164990556181 | glucuronoxylan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucuronoxylan, a polymer containing a beta-1,4-linked D-xylose backbone substituted with glucuronic acid residues. [GOC:tair_curators]
14 | GO:0055062 | 0.00176937347243419 | phosphate ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of phosphate ions within an organism or cell. [GOC:jid, GOC:mah]
14 | GO:0043405 | 0.00557333297497873 | regulation of MAP kinase activity | biological_process | Any process that modulates the frequency, rate or extent of MAP kinase activity. [GOC:dph, GOC:go_curators]
14 | GO:0006323 | 0.00639738684967062 | DNA packaging | biological_process | Any process in which DNA and associated proteins are formed into a compact, orderly structure. [GOC:mah, ISBN:[PHONE]]
14 | GO:0010389 | 0.00643663148470254 | regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that modulates the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:mtg_cell_cycle, PMID:17329565]
14 | GO:0009202 | 0.00815478094022524 | deoxyribonucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
14 | GO:0010398 | 0.00815478094022524 | xylogalacturonan metabolic process | biological_process | The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues. [GOC:tair_curators]
14 | GO:0019593 | 0.00815478094022524 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
14 | GO:0042178 | 0.00815478094022524 | xenobiotic catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:jl]
14 | GO:0051052 | 0.00926761779718879 | regulation of DNA metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving DNA. [GOC:ai]
14 | GO:0000724 | 0.0147875716486883 | double-strand break repair via homologous recombination | biological_process | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. [GOC:elh, PMID:10357855]
14 | GO:0000725 | 0.0147875716486883 | recombinational repair | biological_process | A DNA repair process that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous region of DNA. [GOC:elh]
14 | GO:0006101 | 0.0162443549321546 | citrate metabolic process | biological_process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. [ISBN:[PHONE]]
14 | GO:0009268 | 0.0162443549321546 | response to pH | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. [GOC:jl]
14 | GO:0009432 | 0.0162443549321546 | SOS response | biological_process | An error-prone process for repairing damaged microbial DNA. [GOC:jl, PMID:16000023]
14 | GO:0030002 | 0.0162443549321546 | cellular anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of anions at the level of a cell. [GOC:ceb, GOC:mah]
14 | GO:0030261 | 0.0162443549321546 | chromosome condensation | biological_process | The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells. [GOC:mah, ISBN:[PHONE]]
14 | GO:0030643 | 0.0162443549321546 | cellular phosphate ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of phosphate ions at the level of a cell. [GOC:mah]
14 | GO:0072502 | 0.0162443549321546 | cellular trivalent inorganic anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of trivalent inorganic anions at the level of a cell. [GOC:mah]
14 | GO:1900056 | 0.0162443549321546 | negative regulation of leaf senescence | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of leaf senescence. [GOC:TermGenie]
14 | GO:0000105 | 0.0242692330350747 | histidine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. [GOC:go_curators]
14 | GO:0006547 | 0.0242692330350747 | histidine metabolic process | biological_process | The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. [GOC:go_curators]
14 | GO:0009075 | 0.0242692330350747 | histidine family amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the histidine family. [GOC:ai]
14 | GO:0009076 | 0.0242692330350747 | histidine family amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the histidine family. [GOC:ai]
14 | GO:0010117 | 0.0242692330350747 | photoprotection | biological_process | Protection mechanism used by plants under conditions of excess energy absorption as a consequence of the light reactions of photosynthesis. [GOC:mg]
14 | GO:0052803 | 0.0242692330350747 | imidazole-containing compound metabolic process | biological_process | The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton. [CHEBI:24780]
14 | GO:1900055 | 0.0242692330350747 | regulation of leaf senescence | biological_process | Any process that modulates the frequency, rate or extent of leaf senescence. [GOC:TermGenie]
14 | GO:0006302 | 0.0260779646462656 | double-strand break repair | biological_process | The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix. [GOC:elh]
14 | GO:0006310 | 0.0261743861633417 | DNA recombination | biological_process | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:[PHONE]]
14 | GO:0008283 | 0.0266863573707088 | cell proliferation | biological_process | The multiplication or reproduction of cells, resulting in the expansion of a cell population. [GOC:mah, GOC:mb]
14 | GO:0006281 | 0.0279228307122626 | DNA repair | biological_process | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]
14 | GO:0006275 | 0.0316031002066783 | regulation of DNA replication | biological_process | Any process that modulates the frequency, rate or extent of DNA replication. [GOC:go_curators]
14 | GO:0006102 | 0.0322299223833288 | isocitrate metabolic process | biological_process | The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. [ISBN:[PHONE]]
14 | GO:0015860 | 0.0322299223833288 | purine nucleoside transmembrane transport | biological_process | The directed movement of a purine nucleoside across a membrane. A purine nucleoside is a purine base covalently bonded to a ribose or deoxyribose sugar. [GOC:ai, GOC:vw]
14 | GO:0015867 | 0.0322299223833288 | ATP transport | biological_process | The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
14 | GO:0072350 | 0.0322299223833288 | tricarboxylic acid metabolic process | biological_process | The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing three carboxyl (COOH) groups or anions (COO-). [CHEBI:27093, GOC:mah]
14 | GO:1901642 | 0.0322299223833288 | nucleoside transmembrane transport | biological_process | The directed movement of nucleoside across a membrane. [GOC:pr, GOC:TermGenie]
14 | GO:0006094 | 0.0375790132439123 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
14 | GO:0006974 | 0.0375790132439123 | response to DNA damage stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators]
14 | GO:0006260 | 0.0383590965051949 | DNA replication | biological_process | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah]
14 | GO:0071897 | 0.0383590965051949 | DNA biosynthetic process | biological_process | The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:mah]
14 | GO:0019319 | 0.0396913732839569 | hexose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
14 | GO:0007131 | 0.039880987221876 | reciprocal meiotic recombination | biological_process | The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779]
14 | GO:0035825 | 0.039880987221876 | reciprocal DNA recombination | biological_process | A DNA recombination process that results in the equal exchange of genetic material between the recombining DNA molecules. [GOC:mah, PMID:11139492, PMID:17304215]
14 | GO:0005986 | 0.0401269262164392 | sucrose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
14 | GO:0007140 | 0.0401269262164392 | male meiosis | biological_process | A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle in the male germline. [GOC:dph, GOC:mah]
14 | GO:0010206 | 0.0401269262164392 | photosystem II repair | biological_process | Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition. [GOC:sm]
14 | GO:0010325 | 0.0401269262164392 | raffinose family oligosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization). [GOC:tair_curators]
14 | GO:0015868 | 0.0401269262164392 | purine ribonucleotide transport | biological_process | The directed movement of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, into, out of or within a cell. [GOC:ai]
14 | GO:0030091 | 0.0401269262164392 | protein repair | biological_process | The process of restoring a protein to its original state after damage by such things as oxidation or spontaneous decomposition of residues. [GOC:mlg]
14 | GO:0051503 | 0.0401269262164392 | adenine nucleotide transport | biological_process | The directed movement of adenine nucleotides, ATP, ADP, and/or AMP, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
14 | GO:0072530 | 0.0401269262164392 | purine-containing compound transmembrane transport | biological_process | The directed movement of a purine-containing compound across a membrane. A purine-containing compound is any compound that contains purine or a formal derivative thereof. [CHEBI:26401, GOC:mah]
14 | GO:0007127 | 0.0417651482526923 | meiosis I | biological_process | A cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells. [GOC:dph, GOC:mah, PMID:9334324]
14 | GO:0046364 | 0.0475515542931639 | monosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
14 | GO:0015858 | 0.0479607439092442 | nucleoside transport | biological_process | The directed movement of a nucleoside, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleotide), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
15 | GO:0007005 | 0.000731621978386561 | mitochondrion organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
15 | GO:0006760 | 0.00473632083455989 | folic acid-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units. [CHEBI:37445, GOC:ai, GOC:mah]
15 | GO:0010229 | 0.00748025976130718 | inflorescence development | biological_process | The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure. [GOC:tb]
15 | GO:0009944 | 0.00801221881765074 | polarity specification of adaxial/abaxial axis | biological_process | The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
15 | GO:0006796 | 0.0084575805646619 | phosphate-containing compound metabolic process | biological_process | The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. [GOC:ai]
15 | GO:0048609 | 0.00896812104118405 | multicellular organismal reproductive process | biological_process | The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. [GOC:dph, GOC:jid, GOC:tb]
15 | [NAME] | 0.00906323295167028 | regulation of DNA endoreduplication | biological_process | Any process that modulates the frequency, rate or extent of DNA endoreduplication. [GOC:mah]
15 | GO:0051510 | 0.0112265275632106 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
15 | GO:0044702 | 0.0113687417515509 | single organism reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals, involving a single organism. [GOC:jl]
15 | GO:0010154 | 0.0115260612659019 | fruit development | biological_process | The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant. [GOC:sm]
15 | GO:0022604 | 0.0121302115860577 | regulation of cell morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. [GOC:isa_complete]
15 | GO:0010162 | 0.0122226237973026 | seed dormancy process | biological_process | A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors. [GOC:lr, GOC:PO_curators, ISBN:[PHONE], PO_REF:00009]
15 | GO:0022611 | 0.0122226237973026 | dormancy process | biological_process | A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated. [GOC:isa_complete, GOC:PO_curators, PO_REF:00009]
15 | GO:0006184 | 0.0130745890032869 | GTP catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. [ISBN:[PHONE]]
15 | GO:0046039 | 0.0130745890032869 | GTP metabolic process | biological_process | The chemical reactions and pathways involving GTP, guanosine triphosphate. [GOC:go_curators]
15 | GO:1901069 | 0.0130745890032869 | guanosine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of guanosine-containing compounds (guanosines). [GOC:TermGenie]
15 | GO:0000072 | 0.0134314039016289 | M phase specific microtubule process | biological_process | A microtubule-based process that occurs only during M phase of the cell cycle. [GOC:mah]
15 | GO:0000279 | 0.0134314039016289 | M phase | biological_process | A cell cycle process comprising the steps by which a cell progresses through M phase, the part of the cell cycle comprising nuclear division. [GOC:dph, GOC:mah, ISBN:[PHONE]]
15 | [NAME] | 0.0134314039016289 | DNA strand renaturation | biological_process | The identification and annealing of complementary base pairs in single-strand DNA. [GOC:elh]
15 | GO:0000957 | 0.0134314039016289 | mitochondrial RNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of RNA transcribed from the mitochondrial genome and occurring in the mitochondrion. [GOC:krc, GOC:mah]
15 | GO:0000963 | 0.0134314039016289 | mitochondrial RNA processing | biological_process | The conversion of a primary RNA molecule transcribed from a mitochondrial genome into one or more mature RNA molecules; occurs in the mitochondrion. [GOC:krc, GOC:mah]
15 | GO:0006029 | 0.0134314039016289 | proteoglycan metabolic process | biological_process | The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. [GOC:mah, ISBN:[PHONE]]
15 | GO:0006493 | 0.0134314039016289 | protein O-linked glycosylation | biological_process | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan. [GOC:pr, ISBN:[PHONE], RESID:AA0153, RESID:AA0154, RESID:AA0155, RESID:[NAME], RESID:AA0212]
15 | GO:0010159 | 0.0134314039016289 | specification of organ position | biological_process | The regionalization process in which information that determines the correct position at which organ primordia are formed is generated and perceived resulting in correct positioning of the new organ. [PMID:9611175]
15 | GO:0010358 | 0.0134314039016289 | leaf shaping | biological_process | The developmental process that pertains to the organization of a leaf in three-dimensional space once the structure has initially formed. [GOC:tb, PMID:16971475]
15 | GO:0010384 | 0.0134314039016289 | cell wall proteoglycan metabolic process | biological_process | The chemical reactions and pathways involving cell wall peptidoglycan, a group of glycoproteins that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates. [GOC:tair_curators]
15 | GO:0010404 | 0.0134314039016289 | cell wall hydroxyproline-rich glycoprotein metabolic process | biological_process | The chemical reactions and pathways involving a cell wall hydroxyproline-rich glycoprotein that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates. [GOC:tair_curators]
15 | GO:0010405 | 0.0134314039016289 | arabinogalactan protein metabolic process | biological_process | The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein of highly varying length and domain complexity. These are O-glycosylated at one or more hydroxyproline residues by arabinogalactan (AG) type II groups, which consist of (1->3)-beta-galactan and (1->6)-beta-linked galactan chains connected to each other by (1->3,1->6)-linked branch points, [NAME] and [NAME] positions substituted with terminal arabinosyl residues. Also, rhamnose, fucose, glucuronic and galacturonic acid can be present in the glycan structures. [GOC:tair_curators]
15 | GO:0015729 | 0.0134314039016289 | oxaloacetate transport | biological_process | The directed movement of oxaloacetate, the anion of oxobutanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
15 | GO:0015742 | 0.0134314039016289 | alpha-ketoglutarate transport | biological_process | The directed movement of alpha-ketoglutarate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
15 | GO:0018258 | 0.0134314039016289 | protein O-linked glycosylation via hydroxyproline | biological_process | The glycosylation of proteins via 04 atom of hydroxyproline to form O4-glycosyl-L-hydroxyproline; the most common form is arabinofuranosyl-4-proline. [RESID:AA0212]
15 | GO:0019322 | 0.0134314039016289 | pentose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. [ISBN:[PHONE]]
15 | GO:0019567 | 0.0134314039016289 | arabinose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of arabinose, arabino-pentose. [GOC:ai]
15 | GO:0036292 | 0.0134314039016289 | DNA rewinding | biological_process | The process in which interchain hydrogen bonds between two single-stranded DNA (ssDNA) are reformed to regenerate double-stranded DNA (dsDNA). ssDNA is often bound and stabilized by proteins such as replication protein A (RPA) to form ssDNA bubbles. The bubbles can be rewound by ATP-dependent motors to reform base pairs between strands and thus dsDNA. [[NAME], PMID:22704558, PMID:22705370, PMID:22759634]
15 | GO:0042964 | 0.0134314039016289 | thioredoxin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thioredoxin, a small disulfide-containing redox protein that serves as a general protein disulfide oxidoreductase. [GOC:go_curators]
15 | GO:0043988 | 0.0134314039016289 | histone H3-S28 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a serine residue at position 28 of the histone. [GOC:jl]
15 | GO:0046900 | 0.0134314039016289 | tetrahydrofolylpolyglutamate metabolic process | biological_process | The chemical reactions and pathways involving tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues. [GOC:ai]
15 | GO:0071423 | 0.0134314039016289 | malate transmembrane transport | biological_process | A process in which a malate ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
15 | GO:0019321 | 0.0146094479390439 | pentose metabolic process | biological_process | The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. [ISBN:[PHONE]]
15 | GO:0001558 | 0.016154354250473 | regulation of cell growth | biological_process | Any process that modulates the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
15 | GO:1901068 | 0.016154354250473 | guanosine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving guanosine-containing compounds (guanosines). [GOC:TermGenie]
15 | GO:0009933 | 0.0169549951247329 | meristem structural organization | biological_process | Organization of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm, ISBN:[PHONE]]
15 | GO:0048532 | 0.0169549951247329 | anatomical structure arrangement | biological_process | The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. [GOC:go_curators]
15 | GO:0000338 | 0.0172638152642097 | protein deneddylation | biological_process | The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc]
15 | GO:0010388 | 0.0172638152642097 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
15 | GO:0043414 | 0.0173011823111988 | macromolecule methylation | biological_process | The covalent attachment of a methyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule. [GOC:go_curators]
15 | GO:0009117 | 0.0176700403671429 | nucleotide metabolic process | biological_process | The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates). [GOC:ma]
15 | GO:0006753 | 0.0182333706159325 | nucleoside phosphate metabolic process | biological_process | The chemical reactions and pathways involving any phosphorylated nucleoside. [GOC:mah]
15 | GO:0043412 | 0.0183363686895351 | macromolecule modification | biological_process | The covalent alteration of one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule, resulting in a change in its properties. [GOC:go_curators]
15 | GO:0010431 | 0.0186883863355628 | seed maturation | biological_process | A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation, acquisition of desiccation tolerance, growth arrest and the entry into a dormancy period of variable length that is broken upon germination. [PMID:16096971]
15 | GO:0006325 | 0.0192889679748164 | chromatin organization | biological_process | Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin. [GOC:mah]
15 | GO:0044267 | 0.0213615355073176 | cellular protein metabolic process | biological_process | The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification. [GOC:jl]
15 | GO:0051276 | 0.0216817718035596 | chromosome organization | biological_process | A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
15 | GO:0006626 | 0.0221194872682249 | protein targeting to mitochondrion | biological_process | The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. [GOC:mcc, ISBN:[PHONE]]
15 | GO:0070585 | 0.0221194872682249 | protein localization to mitochondrion | biological_process | A process in which a protein is transported to, or maintained in, a location within the mitochondrion. [GOC:ecd]
15 | GO:0072655 | 0.0221194872682249 | establishment of protein localization to mitochondrion | biological_process | The directed movement of a protein to a specific location in the mitochondrion. [GOC:mah]
15 | GO:0055086 | 0.0222333837967591 | nucleobase-containing small molecule metabolic process | biological_process | The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide. [GOC:vw]
15 | GO:0009914 | 0.0247988484793128 | hormone transport | biological_process | The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:tb]
15 | GO:0060918 | 0.0247988484793128 | auxin transport | biological_process | The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb]
15 | GO:0048638 | 0.0259168941642726 | regulation of developmental growth | biological_process | Any process that modulates the frequency, rate or extent of developmental growth. [GOC:go_curators]
15 | [NAME] | 0.0262332917756331 | seed development | biological_process | The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010]
15 | GO:0006101 | 0.0266845243353852 | citrate metabolic process | biological_process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. [ISBN:[PHONE]]
15 | GO:0009157 | 0.0266845243353852 | deoxyribonucleoside monophosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
15 | GO:0009162 | 0.0266845243353852 | deoxyribonucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
15 | GO:0009432 | 0.0266845243353852 | SOS response | biological_process | An error-prone process for repairing damaged microbial DNA. [GOC:jl, PMID:16000023]
15 | GO:0010071 | 0.0266845243353852 | root meristem specification | biological_process | The specification of a meristem which will give rise to a primary or lateral root. [GOC:ascb_2009, GOC:dph, GOC:tb]
15 | GO:0010450 | 0.0266845243353852 | inflorescence meristem growth | biological_process | The increase in size or mass of an inflorescence meristem, a population of undifferentiated cells in a plant shoot which produces small leaves and then floral meristems, which will give rise to flowers. [GOC:tb]
15 | [NAME] | 0.0266845243353852 | malate transport | biological_process | The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
15 | GO:0018105 | 0.0266845243353852 | peptidyl-serine phosphorylation | biological_process | The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037]
15 | GO:0018209 | 0.0266845243353852 | peptidyl-serine modification | biological_process | The modification of peptidyl-serine. [GOC:go_curators]
15 | GO:0019566 | 0.0266845243353852 | arabinose metabolic process | biological_process | The chemical reactions and pathways involving arabinose, arabino-pentose. L-Arabinose occurs both free, for example in the heartwood of many conifers, and in the combined state, as a constituent of plant hemicelluloses, bacterial polysaccharides etc. D-arabinose is a constituent of arabinonucleosides. [ISBN:[PHONE]]
15 | GO:0019676 | 0.0266845243353852 | ammonia assimilation cycle | biological_process | The pathway by which ammonia is processed and incorporated into a cell. In an energy-rich (glucose-containing), nitrogen-poor environment, glutamine synthetase and glutamate synthase form an ammonia assimilatory cycle, in which ammonia is incorporated into L-glutamate to form L-glutamine, which then combines with alpha-ketoglutarate to regenerate L-glutamate. This ATP-dependent cycle is essential for nitrogen-limited growth and for steady-state growth with some sources of nitrogen. [MetaCyc:AMMASSIM-PWY]
15 | GO:0035404 | 0.0266845243353852 | histone-serine phosphorylation | biological_process | The modification of histones by addition of a phosphate group to a serine residue. [GOC:bf]
15 | GO:0043987 | 0.0266845243353852 | histone H3-S10 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone. [GOC:jl]
15 | GO:0048826 | 0.0266845243353852 | cotyledon morphogenesis | biological_process | The process in which the anatomical structures of the cotyledon are generated and organized. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
15 | [NAME] | 0.0266845243353852 | chaperone-mediated protein complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex. [GOC:ai]
15 | GO:0080086 | 0.0266845243353852 | stamen filament development | biological_process | The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen. [PMID:19139039, PO:0009067]
15 | GO:0032259 | 0.0272763874102146 | methylation | biological_process | The process in which a methyl group is covalently attached to a molecule. [GOC:mah]
15 | GO:0048589 | 0.0272763874102146 | developmental growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. [GOC:go_curators]
15 | GO:0019538 | 0.0274653862480581 | [NAME] process | biological_process | The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. [GOC:ma]
15 | GO:0016579 | 0.0289597440850341 | protein deubiquitination | biological_process | The removal of one or more ubiquitin groups from a protein. [GOC:ai]
15 | GO:0009733 | 0.0309156734884405 | response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]
15 | GO:0001708 | 0.0317333233813079 | cell fate specification | biological_process | The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. [GOC:go_curators]
15 | GO:0051302 | 0.0317333233813079 | regulation of cell division | biological_process | Any process that modulates the frequency, rate or extent of the physical partitioning and separation of a cell into daughter cells. [GOC:go_curators]
15 | GO:0022603 | 0.0322297469793752 | regulation of anatomical structure morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. [GOC:mah]
15 | GO:0040008 | 0.0327080309884255 | regulation of growth | biological_process | Any process that modulates the frequency, rate or extent of the growth of all or part of an organism so that it occurs at its proper speed, either globally or in a specific part of the organism's development. [GOC:ems, GOC:mah]
15 | GO:0040007 | 0.0331346647657054 | growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell. [GOC:bf, GOC:ma]
15 | GO:0030029 | 0.0335042590547784 | [NAME]-based process | biological_process | Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins. [GOC:mah]
15 | GO:0009640 | 0.0346795229491535 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
15 | GO:0006464 | 0.0356843438728611 | cellular protein modification process | biological_process | The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). [GOC:go_curators]
15 | GO:0036211 | 0.0356843438728611 | protein modification process | biological_process | The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification). [GOC:bf, GOC:jl]
15 | GO:0007017 | 0.0374700794796282 | microtubule-based process | biological_process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. [GOC:mah]
15 | GO:0008361 | 0.0375784525716222 | regulation of cell size | biological_process | Any process that modulates the size of a cell. [GOC:go_curators]
15 | GO:0009225 | 0.0375784525716222 | nucleotide-sugar metabolic process | biological_process | The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:[PHONE]]
15 | GO:0043648 | 0.0375784525716222 | dicarboxylic acid metabolic process | biological_process | The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing two carboxyl (COOH) groups or anions (COO-). [ISBN:[PHONE]]
15 | GO:0000266 | 0.0397616996324502 | mitochondrial fission | biological_process | The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. [PMID:11038192]
15 | GO:0006541 | 0.0397616996324502 | glutamine metabolic process | biological_process | The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid. [GOC:ai]
15 | GO:0010158 | 0.0397616996324502 | abaxial cell fate specification | biological_process | The process in which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. [GOC:mg]
15 | GO:0015813 | 0.0397616996324502 | L-glutamate transport | biological_process | The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, GOC:dph, GOC:tb]
15 | GO:0016570 | 0.0409129616597456 | histone modification | biological_process | The covalent alteration of one or more amino acid residues within a histone protein. [GOC:krc]
15 | GO:0046686 | 0.0431872229974828 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
15 | GO:0009826 | 0.0437226182348563 | unidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell. [ISBN:[PHONE]]
15 | GO:0045165 | 0.043800347603716 | cell fate commitment | biological_process | The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. [ISBN:[PHONE]]
15 | GO:0009165 | 0.0459387509125333 | nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). [GOC:go_curators]
15 | GO:1901293 | 0.0470717052890218 | nucleoside phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a nucleoside phosphate. [GOC:TermGenie]
15 | [NAME] | 0.0493875107057503 | histone methylation | biological_process | The modification of histones by addition of methyl groups. [GOC:ai]
16 | GO:0006094 | 2.78713901490435e-05 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
16 | GO:0009220 | 4.55115333946871e-05 | pyrimidine ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
16 | GO:0046686 | 7.67667253628005e-05 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
16 | GO:0019761 | 0.00034958763134814 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
16 | GO:0019344 | 0.000644218638907781 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
16 | GO:0001510 | 0.00091410047007089 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
16 | GO:0009154 | 0.0018706835588089 | purine ribonucleotide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
16 | GO:0009207 | 0.0018706835588089 | purine ribonucleoside triphosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
16 | GO:0046130 | 0.00205214132437501 | purine ribonucleoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. [GOC:ai]
16 | GO:0019288 | 0.00293481831079869 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
16 | GO:0046835 | 0.00350369402902682 | carbohydrate phosphorylation | biological_process | The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:[PHONE]]
16 | GO:0006098 | 0.00435285973765353 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
16 | GO:0040034 | 0.00446564324262103 | regulation of development, heterochronic | biological_process | Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and the rate at which this time point is reached. [PMID:9442909]
16 | GO:0042401 | 0.00446564324262103 | cellular biogenic amine biosynthetic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells resulting in the formation of any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
16 | GO:0009409 | 0.00515592240834628 | response to cold | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr]
16 | GO:0010498 | 0.00523763628465309 | proteasomal protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome. [GOC:tb]
16 | GO:0009684 | 0.00544043812613759 | indoleacetic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants. [ISBN:[PHONE]]
16 | GO:0019321 | 0.00557243621702145 | pentose metabolic process | biological_process | The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. [ISBN:[PHONE]]
16 | GO:0048513 | 0.0066347031141401 | organ development | biological_process | Development of a tissue or tissues that work together to perform a specific function or functions. Development pertains to the process whose specific outcome is the progression of a structure over time, from its formation to the mature structure. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. [GOC:dph, GOC:jid]
16 | GO:0006779 | 0.0071078302920528 | porphyrin-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
16 | GO:0016043 | 0.00772055961655025 | cellular component organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component. [GOC:ai, GOC:jl, GOC:mah]
16 | GO:0006096 | 0.00827266472933233 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
16 | [NAME] | 0.00997056758670468 | response to carbohydrate stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. [GOC:jl]
16 | GO:0019684 | 0.0101793029906041 | photosynthesis, light reaction | biological_process | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. [http://www.arabidopsis.org]
16 | GO:0016036 | 0.0105239120416615 | cellular response to phosphate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]
16 | GO:0042254 | 0.0111044699121338 | ribosome biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma]
16 | GO:0032879 | 0.011299826093478 | regulation of localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location. [GOC:mah]
16 | GO:0006364 | 0.012187736822538 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
16 | GO:0019374 | 0.0124321051814095 | galactolipid metabolic process | biological_process | The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
16 | GO:0019375 | 0.0124321051814095 | galactolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
16 | GO:0016072 | 0.0127331557363885 | rRNA metabolic process | biological_process | The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes. [ISBN:[PHONE]]
16 | GO:0044767 | 0.0129824777103897 | single-organism developmental process | biological_process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. [GOC:jl]
16 | GO:0022613 | 0.0130460688093718 | ribonucleoprotein complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a complex containing RNA and proteins. Includes the biosynthesis of the constituent RNA and protein molecules, and those macromolecular modifications that are involved in synthesis or assembly of the ribonucleoprotein complex. [GOC:isa_complete, GOC:mah]
16 | GO:0048367 | 0.0130515013688 | shoot system development | biological_process | The process whose specific outcome is the progression of the shoot system over time, from its formation to the mature structure. [GOC:go_curators]
16 | GO:0055082 | 0.0132517315739239 | cellular chemical homeostasis | biological_process | Any biological process involved in the maintenance of an internal steady state of a chemical at the level of the cell. [GOC:isa_complete, GOC:jid]
16 | GO:0000162 | 0.0137843067846659 | tryptophan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:[PHONE], MetaCyc:TRPSYN-PWY]
16 | GO:0046219 | 0.0137843067846659 | indolalkylamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
16 | GO:0060284 | 0.0137843067846659 | regulation of cell development | biological_process | Any process that modulates the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. [GOC:dph, GOC:tb]
16 | GO:0034660 | 0.0139534473474153 | [NAME] process | biological_process | The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs). [GOC:mah]
16 | GO:0009247 | 0.0151512438002507 | glycolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
16 | GO:0034599 | 0.0155277195181895 | cellular response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah]
16 | GO:0009790 | 0.0156396999173066 | embryo development | biological_process | The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu]
16 | GO:1901701 | 0.0156689271485078 | cellular response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
16 | GO:0001708 | 0.0177457763678937 | cell fate specification | biological_process | The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. [GOC:go_curators]
16 | GO:0010043 | 0.0177457763678937 | response to zinc ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. [GOC:sm]
16 | GO:0009746 | 0.0179286116974527 | response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:jl]
16 | GO:0043623 | 0.0181500674073703 | cellular protein complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell. [GOC:jl]
16 | GO:0009310 | 0.0182187861827862 | amine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
16 | [NAME] | 0.0182187861827862 | cellular biogenic amine catabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:go_curators, GOC:jl, ISBN:[PHONE]]
16 | GO:0034284 | 0.0189841922850883 | response to monosaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. [GOC:mah]
16 | GO:0006184 | 0.0198869506272339 | GTP catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. [ISBN:[PHONE]]
16 | GO:0046039 | 0.0198869506272339 | GTP metabolic process | biological_process | The chemical reactions and pathways involving GTP, guanosine triphosphate. [GOC:go_curators]
16 | GO:1901069 | 0.0198869506272339 | guanosine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of guanosine-containing compounds (guanosines). [GOC:TermGenie]
16 | GO:0034470 | 0.0199960234520807 | ncRNA processing | biological_process | Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. [GOC:mah]
16 | GO:0042742 | 0.020779778246764 | defense response to bacterium | biological_process | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]
16 | GO:0048827 | 0.0211435509559789 | phyllome development | biological_process | The process whose specific outcome is the progression of a phyllome over time, from its formation to the mature structure. A phyllome is a collective term for all the different types of leaves appearing on plants. [GOC:devbiol, GOC:tb, PO:0006001]
16 | GO:0006200 | 0.0215855180784641 | ATP catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:ai]
16 | GO:0006664 | 0.0216464413712136 | [NAME] process | biological_process | The chemical reactions and pathways involving glycolipids, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar group acylated by one or more fatty acids and the glycerol group may be absent. [CHEBI:33563, ISBN:[PHONE]]
16 | GO:0042744 | 0.0216464413712136 | hydrogen peroxide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl]
16 | GO:0006595 | 0.0227252768072562 | polyamine metabolic process | biological_process | The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. [ISBN:[PHONE]]
16 | GO:0010187 | 0.0228108243268813 | negative regulation of seed germination | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of seed germination. [GOC:tb]
16 | GO:0048506 | 0.0228108243268813 | regulation of timing of meristematic phase transition | biological_process | Any process that modulates the rate, frequency or extent of a change in identity of a meristem at a characteristic predetermined time point. [GOC:dph, GOC:jid, GOC:tb]
16 | GO:0048510 | 0.0228108243268813 | regulation of timing of transition from vegetative to reproductive phase | biological_process | The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs. [GOC:jid, PMID:8974397]
16 | GO:0071822 | 0.0229514982747689 | protein complex subunit organization | biological_process | Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a protein complex. [GOC:mah]
16 | GO:0019941 | 0.0232974275723261 | modification-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent modification of the target protein. [GOC:go_curators]
16 | GO:0043632 | 0.0232974275723261 | modification-dependent macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a macromolecule, initiated by covalent modification of the target molecule. [GOC:jl]
16 | GO:0019725 | 0.0236308392287306 | cellular homeostasis | biological_process | Any process involved in the maintenance of an internal steady state at the level of the cell. [GOC:isa_complete, GOC:jl, ISBN:[PHONE]]
16 | GO:0080129 | 0.0248857572027577 | proteasome core complex assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. [PMID:12401807, PMID:17971041]
16 | GO:0006833 | 0.0249018399161087 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
16 | [NAME] | 0.0249018399161087 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
16 | GO:0006260 | 0.0250345169269814 | DNA replication | biological_process | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah]
16 | GO:0071897 | 0.0250345169269814 | DNA biosynthetic process | biological_process | The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:mah]
16 | GO:0070301 | 0.0254438051478357 | cellular response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [CHEBI:16240, GOC:mah]
16 | GO:1901068 | 0.0254438051478357 | guanosine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving guanosine-containing compounds (guanosines). [GOC:TermGenie]
16 | GO:0034622 | 0.0260183247425395 | cellular macromolecular complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of macromolecules to form a complex, carried out at the cellular level. [GOC:mah]
16 | GO:0006420 | 0.0268628078032135 | arginyl-tRNA aminoacylation | biological_process | The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
16 | GO:0006898 | 0.0268628078032135 | receptor-mediated endocytosis | biological_process | An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles. [GOC:mah, ISBN:[PHONE]]
16 | GO:0008272 | 0.0268628078032135 | sulfate transport | biological_process | The directed movement of sulfate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
16 | GO:0009200 | 0.0268628078032135 | deoxyribonucleoside triphosphate metabolic process | biological_process | The chemical reactions and pathways involving a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
16 | GO:0009202 | 0.0268628078032135 | deoxyribonucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
16 | GO:0009759 | 0.0268628078032135 | indole glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [GOC:ai]
16 | GO:0010275 | 0.0268628078032135 | NAD(P)H dehydrogenase complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form NAD(P)H dehydrogenase complex, which is involved in electron transport from an unidentified electron donor, possibly NAD(P)H or ferredoxin(Fd) to the plastoquinone pool. [GOC:sm]
16 | GO:0010358 | 0.0268628078032135 | leaf shaping | biological_process | The developmental process that pertains to the organization of a leaf in three-dimensional space once the structure has initially formed. [GOC:tb, PMID:16971475]
16 | GO:0017145 | 0.0268628078032135 | stem cell division | biological_process | The self-renewing division of a stem cell. A stem cell is an undifferentiated cell, in the embryo or adult, that can undergo unlimited division and give rise to one or several different cell types. [GOC:jid, [NAME]]
16 | GO:0019500 | 0.0268628078032135 | cyanide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration. [ISBN:[PHONE]]
16 | GO:0022619 | 0.0268628078032135 | generative cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a generative cell. The generative cell gives rise to the sperm cells in the male gametophyte. [GOC:isa_complete]
16 | GO:0031647 | 0.0268628078032135 | regulation of protein stability | biological_process | Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation. [GOC:dph, GOC:mah, GOC:tb]
16 | GO:0050821 | 0.0268628078032135 | protein stabilization | biological_process | Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation. [GOC:ai]
16 | GO:0052746 | 0.0268628078032135 | inositol phosphorylation | biological_process | The process of introducing one or more phosphate groups into inositol. Inositol is the cyclic alcohol 1,2,3,4,5,6-cyclohexanehexol, which is widely distributed in nature and acts as a growth factor in animals and microorganisms. [CHEBI:24848, ISBN:[PHONE]]
16 | GO:0060003 | 0.0268628078032135 | copper ion export | biological_process | The directed movement of copper ions out of a cell or organelle. [GOC:dph]
16 | GO:0070407 | 0.0268628078032135 | oxidation-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the oxidation of one or more amino acid residues in the protein. [GOC:mah]
16 | GO:0072583 | 0.0268628078032135 | clathrin-mediated endocytosis | biological_process | An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles. [GOC:BHF, GOC:mah, PMID:18498251, PMID:8970738, PMID:9234965]
16 | GO:0080051 | 0.0268628078032135 | cutin transport | biological_process | The directed movement of cutin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [NAME], which consists of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface. [PMID:17951461]
16 | GO:0080094 | 0.0268628078032135 | response to trehalose-6-phosphate stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose-6-phosphate stimulus. [PMID:19193861]
16 | GO:1901668 | 0.0268628078032135 | regulation of superoxide dismutase activity | biological_process | Any process that modulates the frequency, rate or extent of superoxide dismutase activity. [GOC:TermGenie]
16 | GO:1901671 | 0.0268628078032135 | positive regulation of superoxide dismutase activity | biological_process | Any process that activates or increases the frequency, rate or extent of superoxide dismutase activity. [GOC:TermGenie]
16 | GO:2000036 | 0.0268628078032135 | regulation of stem cell maintenance | biological_process | Any process that modulates the frequency, rate or extent of stem cell maintenance. [GOC:obol]
16 | GO:2000069 | 0.0268628078032135 | regulation of post-embryonic root development | biological_process | Any process that modulates the frequency, rate or extent of post-embryonic root development. [GOC:obol]
16 | [NAME] | 0.0268628078032135 | regulation of stem cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of stem cell differentiation. [GOC:obol]
16 | GO:0046034 | 0.0268988570745806 | ATP metabolic process | biological_process | The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators]
16 | GO:0045165 | 0.0283865778616522 | cell fate commitment | biological_process | The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. [ISBN:[PHONE]]
16 | GO:0022622 | 0.0286714648534312 | root system development | biological_process | The process whose specific outcome is the progression of the root system over time, from its formation to the mature structure. [GOC:isa_complete]
16 | GO:0048364 | 0.0286714648534312 | root development | biological_process | The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. [GOC:jid, PO:0009005]
16 | GO:0046148 | 0.0295242602727773 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
16 | GO:0043933 | 0.0311309618931692 | macromolecular complex subunit organization | biological_process | Any process in which macromolecules aggregate, disaggregate, or are modified, resulting in the formation, disassembly, or alteration of a macromolecular complex. [GOC:mtg_mpo]
16 | GO:0006568 | 0.0314719562950226 | tryptophan metabolic process | biological_process | The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:[PHONE]]
16 | GO:0006586 | 0.0314719562950226 | indolalkylamine metabolic process | biological_process | The chemical reactions and pathways involving indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
16 | GO:0009750 | 0.0315748805215073 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
16 | GO:0009059 | 0.0320116168053514 | macromolecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [CHEBI:33694, GOC:mah]
16 | GO:0009902 | 0.0334068501117018 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
16 | GO:0051644 | 0.0334068501117018 | [NAME] | biological_process | Any process in which a plastid is transported to, and/or maintained in, a specific location within the cell. [GOC:ai]
16 | GO:0051667 | 0.0334068501117018 | establishment of plastid localization | biological_process | The directed movement of a plastid to a specific location in the cell. [GOC:ai]
16 | GO:0009636 | 0.0336467010136884 | response to toxic substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a toxic stimulus. [GOC:lr]
16 | GO:0045037 | 0.0336467010136884 | protein import into chloroplast stroma | biological_process | The import of proteins into the chloroplast stroma. Import depends on ATP hydrolysis catalyzed by stromal chaperones. Chloroplast stromal proteins, such as the S subunit of rubisco, have a N-terminal stromal-import sequence of about 44 amino acids which is cleaved from the protein precursor after import. [ISBN:[PHONE]]
16 | GO:0090332 | 0.0336467010136884 | stomatal closure | biological_process | The process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. [GOC:tb]
16 | GO:0009793 | 0.0341366484051162 | embryo development ending in seed dormancy | biological_process | The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]
16 | GO:0048366 | 0.0341970845656869 | leaf development | biological_process | The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. [GOC:go_curators]
16 | GO:0010154 | 0.0348930408587714 | fruit development | biological_process | The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant. [GOC:sm]
16 | GO:0051049 | 0.035087926630219 | regulation of transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
16 | GO:0030003 | 0.0353038065623358 | cellular cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of cations at the level of a cell. [GOC:ceb, GOC:mah]
16 | GO:0051656 | 0.0353038065623358 | establishment of organelle localization | biological_process | The directed movement of an organelle to a specific location. [GOC:ai]
16 | GO:0010029 | 0.038147032010367 | regulation of seed germination | biological_process | Any process that modulates the frequency, rate or extent of seed germination. [GOC:sm]
16 | GO:0010467 | 0.038486518874123 | gene expression | biological_process | The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
16 | GO:0044763 | 0.0386099678733666 | single-organism cellular process | biological_process | Any process that is carried out at the cellular level, occurring within a single organism. [GOC:jl]
16 | GO:0009073 | 0.0391191123901034 | aromatic amino acid family biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
16 | GO:0051239 | 0.0391246819237563 | regulation of multicellular organismal process | biological_process | Any process that modulates the frequency, rate or extent of a multicellular organismal process, the processes pertinent to the function of a multicellular organism above the cellular level; includes the integrated processes of tissues and organs. [GOC:ai, GOC:dph, GOC:tb]
16 | GO:0006873 | 0.0392944855161423 | cellular ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of ions at the level of a cell. [GOC:mah]
16 | GO:0006783 | 0.03967530241075 | heme biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring, from less complex precursors. [GOC:jl]
16 | GO:0009789 | 0.03967530241075 | positive regulation of abscisic acid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of abscisic acid mediated signal transduction. [GOC:lr]
16 | GO:0006412 | 0.0414603235883085 | translation | biological_process | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]
16 | GO:0009072 | 0.0438058342001256 | aromatic amino acid family metabolic process | biological_process | The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
16 | GO:0006461 | 0.0453901403626843 | protein complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a protein complex. [GOC:ai]
16 | GO:1900140 | 0.0454839199044017 | regulation of seedling development | biological_process | Any process that modulates the frequency, rate or extent of seedling development. [GOC:TermGenie]
16 | GO:0042168 | 0.0460770586229513 | heme metabolic process | biological_process | The chemical reactions and pathways involving heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring. [GOC:jl, ISBN:[PHONE]]
16 | GO:1901421 | 0.0460770586229513 | positive regulation of response to alcohol | biological_process | Any process that activates or increases the frequency, rate or extent of response to alcohol. [GOC:mengo_curators, GOC:TermGenie]
16 | GO:0046467 | 0.0472613718328192 | membrane lipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai]
16 | GO:0070271 | 0.047649605156917 | protein complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a protein complex. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex. [GOC:mah]
16 | GO:0015995 | 0.048072628219551 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
16 | GO:0015979 | 0.0482611627780088 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
16 | GO:0006655 | 0.0493955004452309 | phosphatidylglycerol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. [ISBN:[PHONE]]
16 | GO:0046471 | 0.0493955004452309 | [NAME] process | biological_process | The chemical reactions and pathways involving phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. They are important constituents of cell membranes. [ISBN:[PHONE]]
17 | GO:0019344 | 1.14960183400952e-05 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
17 | GO:0010114 | 1.99345118526052e-05 | response to red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm]
17 | GO:0010218 | 2.43668392480301e-05 | response to far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb]
17 | GO:0009637 | 5.51615258779591e-05 | response to blue light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. [GOC:ai, GOC:mtg_far_red]
17 | GO:0006364 | 6.72303964548399e-05 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
17 | [NAME] | 0.000137946948245452 | photosynthetic electron transport in photosystem I | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
17 | GO:0010155 | 0.000651292854516261 | regulation of proton transport | biological_process | Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:sm]
17 | GO:0006633 | 0.00112261044792929 | fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:[PHONE]]
17 | GO:0010207 | 0.00112261044792929 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
17 | GO:0015979 | 0.00153894605710884 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
17 | GO:0006007 | 0.0019988682171809 | glucose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose. [GOC:ai]
17 | GO:0046688 | 0.00203027317285192 | response to copper ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus. [GOC:ai]
17 | GO:0009744 | 0.00279481961825669 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
17 | GO:0006732 | 0.00394638096427289 | coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:[PHONE]]
17 | GO:0009644 | 0.00426936048464101 | response to high light intensity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:go_curators]
17 | GO:0055081 | 0.00617701229184887 | anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of anions within an organism or cell. [GOC:ceb, GOC:jid, GOC:mah]
17 | GO:0016126 | 0.00730796625553373 | sterol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators]
17 | GO:0009746 | 0.00764571072833033 | response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:jl]
17 | [NAME] | 0.00902702774882661 | brassinosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
17 | GO:0042335 | 0.00963801742654119 | cuticle development | biological_process | The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:[PHONE]]
17 | GO:0071555 | 0.00986158095045826 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
17 | GO:0006833 | 0.00988965672835293 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
17 | GO:0007044 | 0.0100735529261065 | cell-substrate junction assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a junction between a cell and its substrate. [GOC:mah]
17 | GO:0007045 | 0.0100735529261065 | cell-substrate adherens junction assembly | biological_process | The aggregation, arrangement, and bonding together of a set of components to form a cell-substrate adherens junction. [GOC:mah]
17 | GO:0007160 | 0.0100735529261065 | cell-matrix adhesion | biological_process | The binding of a cell to the extracellular matrix via adhesion molecules. [GOC:hb]
17 | GO:0008285 | 0.0100735529261065 | negative regulation of cell proliferation | biological_process | Any process that stops, prevents or reduces the rate or extent of cell proliferation. [GOC:go_curators]
17 | GO:0010047 | 0.0100735529261065 | fruit dehiscence | biological_process | The process leading to the spontaneous opening of the fruit permitting the escape of seeds. [GOC:tb, ISBN:[PHONE]]
17 | GO:0031589 | 0.0100735529261065 | cell-substrate adhesion | biological_process | The attachment of a cell to the underlying substrate via adhesion molecules. [GOC:mah, GOC:pf]
17 | [NAME] | 0.0100735529261065 | adherens junction organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments. [GOC:dph, GOC:jl, GOC:mah]
17 | GO:0034333 | 0.0100735529261065 | adherens junction assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form an adherens junction. An adherens junction is a cell junction at which the cytoplasmic face of the plasma membrane is attached to actin filaments. [GOC:mah]
17 | GO:0048041 | 0.0100735529261065 | focal adhesion assembly | biological_process | The aggregation and bonding together of a set of components to form a focal adhesion, a complex of intracellular signaling and structural proteins that provides a structural link between the internal actin cytoskeleton and the ECM, and also function as a locus of signal transduction activity. [GOC:jid, GOC:mah]
17 | GO:0080144 | 0.0100735529261065 | amino acid homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of amino acid within an organism or cell. [PMID:19955263]
17 | GO:0055080 | 0.0116012594280903 | cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of cations within an organism or cell. [GOC:ceb, GOC:jid, GOC:mah]
17 | GO:0006084 | 0.0122095918984424 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
17 | GO:0000038 | 0.0123231977512192 | very long-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:hjd]
17 | GO:0006637 | 0.0129138399023583 | acyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [ISBN:[PHONE]]
17 | GO:0035383 | 0.0129138399023583 | [NAME] process | biological_process | The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
17 | GO:0006091 | 0.0149992062904699 | generation of precursor metabolites and energy | biological_process | The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances. [GOC:jl]
17 | GO:0034614 | 0.0151641963111635 | cellular response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mah]
17 | GO:0006098 | 0.0161218553015572 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
17 | GO:0006740 | 0.0161218553015572 | NADPH regeneration | biological_process | A metabolic process that generates a pool of NADPH by the reduction of NADP+. [GOC:mah]
17 | GO:0070838 | 0.0166835288410815 | divalent metal ion transport | biological_process | The directed movement of divalent metal cations, any metal ion with a +2 electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
17 | GO:0009825 | 0.0167800153730062 | multidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes. [ISBN:[PHONE]]
17 | GO:0043473 | 0.0167800153730062 | pigmentation | biological_process | The deposition or aggregation of coloring matter in an organism, tissue or cell. [GOC:jl]
17 | GO:0043476 | 0.0167800153730062 | pigment accumulation | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to some external stimulus. [GOC:jl]
17 | GO:0043478 | 0.0167800153730062 | pigment accumulation in response to UV light | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to a UV light stimulus. [GOC:jl]
17 | GO:0043479 | 0.0167800153730062 | pigment accumulation in tissues in response to UV light | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
17 | GO:0043480 | 0.0167800153730062 | pigment accumulation in tissues | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to an external stimulus. [GOC:jl]
17 | GO:0043481 | 0.0167800153730062 | anthocyanin accumulation in tissues in response to UV light | biological_process | The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
17 | GO:0006739 | 0.0172573862842353 | NADP metabolic process | biological_process | The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
17 | GO:0034599 | 0.0176228192215529 | cellular response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah]
17 | GO:0046496 | 0.0178435040448206 | [NAME] process | biological_process | The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [ISBN:[PHONE]]
17 | GO:0019362 | 0.018441956103623 | [NAME] process | biological_process | The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl]
17 | GO:0072511 | 0.0190528140084779 | divalent inorganic cation transport | biological_process | The directed movement of inorganic cations with a valency of two into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage. [GOC:mah]
17 | GO:0009411 | 0.0196761468752744 | response to UV | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:hb]
17 | GO:0072524 | 0.0196761468752744 | pyridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. [CHEBI:26421, GOC:mah]
17 | GO:0010115 | 0.0200472241503446 | regulation of abscisic acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid. [GOC:sm]
17 | GO:0034329 | 0.0200472241503446 | cell junction assembly | biological_process | A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a cell junction. [GOC:mah]
17 | GO:0071457 | 0.0200472241503446 | cellular response to ozone | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus. [GOC:mah]
17 | GO:0071493 | 0.0200472241503446 | cellular response to UV-B | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm. [GOC:mah]
17 | GO:0035303 | 0.0212278316164774 | regulation of dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule. [GOC:bf]
17 | GO:0035304 | 0.0212278316164774 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
17 | GO:0009651 | 0.0218724760024189 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
17 | GO:0008299 | 0.0226582301794204 | isoprenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:[PHONE]]
17 | GO:0006096 | 0.0229821847729486 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
17 | GO:0019216 | 0.0239061490948083 | regulation of lipid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving lipids. [GOC:go_curators]
17 | GO:0015994 | 0.0251194021191631 | chlorophyll metabolic process | biological_process | The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl]
17 | GO:0006720 | 0.0259565614119293 | isoprenoid metabolic process | biological_process | The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:[PHONE]]
17 | GO:0016114 | 0.0266090715121463 | terpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. [GOC:ai]
17 | GO:0009750 | 0.0284398277004312 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
17 | GO:0006970 | 0.0294193743971801 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
17 | GO:0009900 | 0.0299219882066015 | dehiscence | biological_process | The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it. [ISBN:[PHONE]]
17 | [NAME] | 0.0299219882066015 | nonphotochemical quenching | biological_process | The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted as heat. This process helps maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage. [PMID:10667783, PMID:10938857]
17 | GO:0015988 | 0.0299219882066015 | energy coupled proton transmembrane transport, against electrochemical gradient | biological_process | The transport of protons across a membrane and against an electrochemical gradient, using energy from a source such as ATP hydrolysis, light, or electron transport. [GOC:mah]
17 | GO:0015991 | 0.0299219882066015 | ATP hydrolysis coupled proton transport | biological_process | The transport of protons against an electrochemical gradient, using energy from ATP hydrolysis. [GOC:mah, GOC:vw]
17 | GO:0019747 | 0.0299219882066015 | regulation of isoprenoid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving isoprenoids. [GOC:go_curators]
17 | GO:0030026 | 0.0299219882066015 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
17 | GO:0034330 | 0.0299219882066015 | cell junction organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell junction. A cell junction is a specialized region of connection between two cells or between a cell and the extracellular matrix. [GOC:dph, GOC:jl, GOC:mah]
17 | GO:0045216 | 0.0299219882066015 | cell-cell junction organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
17 | GO:0047484 | 0.0299219882066015 | regulation of response to osmotic stress | biological_process | Any process that modulates the rate or extent of the response to osmotic stress. [GOC:ai]
17 | GO:0055071 | 0.0299219882066015 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
17 | GO:0071324 | 0.0299219882066015 | cellular response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:mah]
17 | GO:0071329 | 0.0299219882066015 | cellular response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:mah]
17 | GO:1990066 | 0.0299219882066015 | energy quenching | biological_process | The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted by nonphotochemical quenching or chlorophyll fluorescence. [PMID:10938857]
17 | GO:0030003 | 0.0307112528911941 | cellular cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of cations at the level of a cell. [GOC:ceb, GOC:mah]
17 | GO:0006721 | 0.0322367494568825 | terpenoid metabolic process | biological_process | The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups. [ISBN:[PHONE]]
17 | GO:0048469 | 0.0322367494568825 | cell maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state. [GOC:go_curators]
17 | GO:0048764 | 0.0322367494568825 | trichoblast maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a trichoblast cell to attain its fully functional state. [GOC:jid]
17 | GO:0048765 | 0.0322367494568825 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
17 | GO:0006873 | 0.0330758844532593 | cellular ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of ions at the level of a cell. [GOC:mah]
17 | GO:0006778 | 0.0339639963523344 | porphyrin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
17 | GO:0010054 | 0.0339639963523344 | trichoblast differentiation | biological_process | The process in which a relatively unspecialized cell acquires the specialized features of a trichoblast, a root epidermal cell that will give rise to a root hair. [GOC:tb]
17 | GO:0033013 | 0.0339639963523344 | tetrapyrrole metabolic process | biological_process | The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
17 | GO:0055082 | 0.0367965863463589 | cellular chemical homeostasis | biological_process | Any biological process involved in the maintenance of an internal steady state of a chemical at the level of the cell. [GOC:isa_complete, GOC:jid]
17 | GO:0010053 | 0.0375788962295142 | root epidermal cell differentiation | biological_process | The process in which a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast. [GOC:tb]
17 | GO:0015995 | 0.0380828762422294 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
17 | GO:0006733 | 0.0394668110032013 | oxidoreduction coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed. [GOC:mah]
17 | GO:0021700 | 0.0394668110032013 | developmental maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for an anatomical structure, cell or cellular component to attain its fully functional state. [GO_REF:0000021, GOC:cls, GOC:dgh, GOC:dph, GOC:jid, GOC:mtg_15jun06]
17 | GO:0015714 | 0.0396988102738889 | phosphoenolpyruvate transport | biological_process | The directed movement of phosphoenolpyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
17 | GO:0016998 | 0.0396988102738889 | cell wall macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall. [GOC:go_curators]
17 | GO:0055070 | 0.0396988102738889 | copper ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of copper ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
17 | GO:0019684 | 0.0404309246287091 | photosynthesis, light reaction | biological_process | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. [http://www.arabidopsis.org]
17 | GO:0016143 | 0.0407240534905822 | S-glycoside metabolic process | biological_process | The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
17 | GO:0019757 | 0.0407240534905822 | glycosinolate metabolic process | biological_process | The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
17 | GO:0019760 | 0.0407240534905822 | glucosinolate metabolic process | biological_process | The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. [CHEBI:24279, GOC:curators]
17 | GO:0006508 | 0.0416517967599108 | proteolysis | biological_process | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]
17 | GO:0032268 | 0.0434039632754548 | regulation of cellular protein metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. [GOC:mah]
17 | GO:0006470 | 0.0434560816898901 | protein dephosphorylation | biological_process | The process of removing one or more phosphoric residues from a protein. [GOC:hb]
17 | GO:0046148 | 0.0475563404243178 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
17 | GO:0051246 | 0.0475563404243178 | regulation of protein metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein. [GOC:ai]
17 | GO:0048767 | 0.0477226855201656 | [NAME] elongation | biological_process | The process in which the root hair grows longer. [GOC:jid, PMID:12468740]
17 | GO:0008643 | 0.0480339965418915 | carbohydrate transport | biological_process | The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y. [GOC:ai]
17 | GO:0048653 | 0.0480339965418915 | anther development | biological_process | The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure. [GOC:jid, GOC:sm]
17 | [NAME] | 0.0493786462664957 | phosphoglycerate transport | biological_process | The directed movement of phosphoglycerate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
17 | GO:0019253 | 0.0493786462664957 | reductive pentose-phosphate cycle | biological_process | The fixation of carbon dioxide (CO2) as glucose in the chloroplasts of C3 plants; uses ATP and NADPH formed in the light reactions of photosynthesis; carbon dioxide reacts with ribulose 1,5-bisphosphate (catalyzed by the function of ribulose-bisphosphate carboxylase) to yield two molecules of 3-phosphoglycerate; these are then phosphorylated by ATP to 1,3-bisphosphateglyceraldehyde which, in turn, is then reduced by NADPH to glyceraldehyde 3-phosphate. The glyceraldehyde 3-phosphate is converted to fructose 5-phosphate and ribulose 5-phosphate by aldolase and other enzymes; the ribulose 5-phosphate is phosphorylated by ATP to ribulose 1,5-bisphosphate. [ISBN:[PHONE]]
17 | GO:0019430 | 0.0493786462664957 | removal of superoxide radicals | biological_process | Any process involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2). [CHEBI:18421, GOC:jl]
17 | GO:0019685 | 0.0493786462664957 | photosynthesis, dark reaction | biological_process | A complex cycle of enzyme-mediated reactions which catalyzes the reduction of carbon dioxide to sugar. As well as carbon dioxide the cycle requires reducing power in the form of reduced nicotinamide adenine dinucleotide phosphate (NADP) and chemical energy in the form of adenosine triphosphate (ATP). The reduced NADP (NADPH) and ATP are produced by the 'light' reactions. [ISBN:[PHONE]]
17 | GO:0034644 | 0.0493786462664957 | cellular response to UV | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:mah]
17 | GO:0042761 | 0.0493786462664957 | very long-chain fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:go_curators]
17 | GO:0042873 | 0.0493786462664957 | aldonate transport | biological_process | The directed movement of aldonate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
17 | GO:0071451 | 0.0493786462664957 | cellular response to superoxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion. [GOC:mah]
17 | GO:0071484 | 0.0493786462664957 | cellular response to light intensity | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus. [GOC:mah]
18 | GO:0019761 | 1.17976690574314e-06 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
18 | GO:0010114 | 5.25116004194205e-06 | response to red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm]
18 | GO:0010218 | 6.64375932509256e-06 | response to far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb]
18 | GO:0009637 | 1.7279613164097e-05 | response to blue light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. [GOC:ai, GOC:mtg_far_red]
18 | GO:0006098 | 2.18568552584632e-05 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
18 | GO:0006364 | 4.56798276335118e-05 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
18 | GO:0010310 | 0.000101737513888604 | regulation of hydrogen peroxide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. [PMID:14765119]
18 | GO:0006021 | 0.000149643553248939 | inositol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms. [CHEBI:24848, ISBN:[PHONE]]
18 | GO:0009744 | 0.000172172231800494 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
18 | [NAME] | 0.000300720259283214 | photosynthetic electron transport in photosystem I | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
18 | GO:0009644 | 0.000316788212995434 | response to high light intensity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:go_curators]
18 | [NAME] | 0.000445340363367734 | nonphotochemical quenching | biological_process | The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted as heat. This process helps maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage. [PMID:10667783, PMID:10938857]
18 | GO:0042549 | 0.000445340363367734 | photosystem II stabilization | biological_process | The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. [GOC:go_curators]
18 | GO:0009862 | 0.000476974280608318 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
18 | GO:0035304 | 0.00073961626407493 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
18 | GO:0010155 | 0.00138741390684558 | regulation of proton transport | biological_process | Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:sm]
18 | GO:0046394 | 0.0019170306594482 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the formation of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups. [ISBN:[PHONE]]
18 | GO:0010207 | 0.00275080479219761 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
18 | GO:0019853 | 0.00301906486602075 | L-ascorbic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions. [CHEBI:38290, GOC:ma, ISBN:[PHONE]]
18 | GO:0019684 | 0.00455086345156884 | photosynthesis, light reaction | biological_process | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. [http://www.arabidopsis.org]
18 | GO:0009765 | 0.00631626533793107 | photosynthesis, light harvesting | biological_process | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. [GOC:sm]
18 | GO:0010027 | 0.00784308703049478 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
18 | GO:0009595 | 0.00816396422650366 | detection of biotic stimulus | biological_process | The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal. [GOC:hb]
18 | GO:0009902 | 0.00906308142249164 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
18 | GO:0042742 | 0.0107192490560421 | defense response to bacterium | biological_process | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]
18 | GO:0019344 | 0.0107234680882422 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
18 | [NAME] | 0.0111282525174658 | [NAME] process | biological_process | The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
18 | GO:0009070 | 0.0111282525174658 | [NAME] amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
18 | GO:0015994 | 0.0115433892607421 | chlorophyll metabolic process | biological_process | The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl]
18 | GO:0009769 | 0.0123121202430355 | photosynthesis, light harvesting in photosystem II | biological_process | After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem II, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
18 | GO:0046900 | 0.0123121202430355 | tetrahydrofolylpolyglutamate metabolic process | biological_process | The chemical reactions and pathways involving tetrahydrofolylpolyglutamate, a folate derivative comprising tetrahydrofolate attached to a chain of glutamate residues. [GOC:ai]
18 | GO:0015995 | 0.0127563694427886 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
18 | GO:0072330 | 0.0129923577586391 | monocarboxylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
18 | GO:0009617 | 0.0146728533369892 | response to bacterium | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. [GOC:hb]
18 | GO:0000165 | 0.0152434110861667 | MAPK cascade | biological_process | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP [NAME]-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
18 | GO:0007243 | 0.0152434110861667 | intracellular protein kinase cascade | biological_process | A series of reactions in which a signal is passed on to downstream proteins within the cell by sequential protein phosphorylation and activation of the cascade components. [GOC:bf, GOC:jl, GOC:signaling]
18 | GO:0009746 | 0.0152434110861667 | response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:jl]
18 | GO:0034284 | 0.0159096834218445 | response to monosaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. [GOC:mah]
18 | GO:0043900 | 0.016553238252367 | regulation of multi-organism process | biological_process | Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
18 | GO:0006778 | 0.0168261026909343 | porphyrin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
18 | GO:0033013 | 0.0168261026909343 | tetrapyrrole metabolic process | biological_process | The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
18 | GO:0042127 | 0.0186445135706219 | regulation of cell proliferation | biological_process | Any process that modulates the frequency, rate or extent of cell proliferation. [GOC:jl]
18 | GO:0006779 | 0.0195155399549204 | porphyrin-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
18 | GO:0006833 | 0.0195155399549204 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
18 | [NAME] | 0.0195155399549204 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
18 | GO:0042440 | 0.0197704463689642 | pigment metabolic process | biological_process | The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:jl, ISBN:[PHONE]]
18 | GO:1901566 | 0.0200792158382657 | organonitrogen compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of organonitrogen compound. [GOC:pr, GOC:TermGenie]
18 | GO:0033014 | 0.0202925433416918 | tetrapyrrole biosynthetic process | biological_process | The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
18 | GO:0019438 | 0.0230201436815847 | aromatic compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai]
18 | GO:0009069 | 0.0242018023422878 | [NAME] acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
18 | GO:0051188 | 0.0242018023422878 | cofactor biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a cofactor, a substance that is required for the activity of an enzyme or other protein. [GOC:ai]
18 | GO:0000082 | 0.0244745969326882 | G1/S transition of mitotic cell cycle | biological_process | The mitotic cell cycle transition by which a cell in G1 commits to S phase. The process begins with the build up of [NAME] kinase ([NAME]), resulting in the activation of transcription of G1 cyclins. The process ends with the positive feedback of the G1 cyclins on the G1 CDK which commits the cell to S phase, in which DNA replication is initiated. [GOC:mtg_cell_cycle]
18 | GO:0006171 | 0.0244745969326882 | cAMP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). [ISBN:[PHONE]]
18 | GO:0006624 | 0.0244745969326882 | vacuolar protein processing | biological_process | Protein processing that takes place in the vacuole. Most protein processing in the vacuole represents proteolytic cleavage of precursors to form active enzymes. [GOC:mah]
18 | GO:0007187 | 0.0244745969326882 | G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger | biological_process | The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation or inhibition of a nucleotide cyclase activity and a subsequent change in the concentration of a cyclic nucleotide. [GOC:mah, GOC:signaling, ISBN:[PHONE]]
18 | GO:0007188 | 0.0244745969326882 | adenylate cyclase-modulating G-protein coupled receptor signaling pathway | biological_process | The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds through activation or inhibition of adenylyl cyclase activity and a subsequent change in the concentration of cyclic AMP (cAMP). [GOC:mah, GOC:signaling, ISBN:[PHONE]]
18 | GO:0015976 | 0.0244745969326882 | carbon utilization | biological_process | A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism. [GOC:mah, GOC:mlg]
18 | GO:0019933 | 0.0244745969326882 | cAMP-mediated signaling | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via cyclic AMP (cAMP). Includes production of cAMP, and downstream effectors that further transmit the signal within the cell. [GOC:signaling]
18 | GO:0019935 | 0.0244745969326882 | cyclic-nucleotide-mediated signaling | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via a cyclic nucleotide. Includes production or release of the cyclic nucleotide, and downstream effectors that further transmit the signal within the cell. [GOC:signaling]
18 | GO:0030799 | 0.0244745969326882 | regulation of cyclic nucleotide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving cyclic nucleotides. [GOC:mah]
18 | GO:0030802 | 0.0244745969326882 | regulation of cyclic nucleotide biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of cyclic nucleotides. [GOC:mah]
18 | GO:0030814 | 0.0244745969326882 | regulation of cAMP metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). [GOC:mah]
18 | GO:0030817 | 0.0244745969326882 | regulation of cAMP biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). [GOC:mah]
18 | GO:0031279 | 0.0244745969326882 | regulation of cyclase activity | biological_process | Any process that modulates the frequency, rate or extent of cyclase activity. [GOC:mah]
18 | GO:0045761 | 0.0244745969326882 | regulation of adenylate cyclase activity | biological_process | Any process that modulates the frequency, rate or extent of adenylate cyclase activity. [GOC:go_curators]
18 | GO:0046058 | 0.0244745969326882 | cAMP metabolic process | biological_process | The chemical reactions and pathways involving the nucleotide cAMP (cyclic AMP, adenosine 3',5'-cyclophosphate). [GOC:go_curators]
18 | GO:0051339 | 0.0244745969326882 | regulation of lyase activity | biological_process | Any process that modulates the frequency, rate or extent of lyase activity, the catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring. [EC:4.-.-.-, GOC:ai]
18 | GO:0071703 | 0.0244745969326882 | detection of organic substance | biological_process | The series of events in which an organic substance stimulus is received by a cell and converted into a molecular signal. [GOC:mah]
18 | GO:2000067 | 0.0244745969326882 | regulation of root morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of root morphogenesis. [GOC:obol]
18 | GO:0046148 | 0.0256054444590381 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
18 | GO:0009867 | 0.0271974866790298 | [NAME] mediated signaling pathway | biological_process | A series of molecular signals mediated by [NAME]. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
18 | GO:0071395 | 0.0271974866790298 | cellular response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:mah]
18 | GO:0009409 | 0.028150536314902 | response to cold | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr]
18 | GO:0010073 | 0.0285677630375886 | meristem maintenance | biological_process | Any process involved in maintaining the identity, size and shape of a meristem. [GOC:tb]
18 | GO:0031348 | 0.0301085043666452 | negative regulation of defense response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. [GOC:mah]
18 | GO:0033554 | 0.0319472846108983 | cellular response to stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
18 | GO:0010074 | 0.0320339293529598 | maintenance of meristem identity | biological_process | The process in which an organism retains a population of meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:tb]
18 | GO:0008652 | 0.0322203535106688 | cellular amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:[PHONE]]
18 | GO:0009753 | 0.0334066090872684 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
18 | GO:0000097 | 0.0360072658714243 | sulfur amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine. [GOC:ai]
18 | GO:0009187 | 0.0364892252176822 | cyclic nucleotide metabolic process | biological_process | The chemical reactions and pathways involving a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue. [GOC:go_curators, ISBN:[PHONE]]
18 | GO:0009190 | 0.0364892252176822 | cyclic nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue. [GOC:go_curators, ISBN:[PHONE]]
18 | GO:0009768 | 0.0364892252176822 | photosynthesis, light harvesting in photosystem I | biological_process | After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
18 | GO:0030026 | 0.0364892252176822 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
18 | GO:0030808 | 0.0364892252176822 | regulation of nucleotide biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of nucleotides. [GOC:mah]
18 | GO:0052652 | 0.0364892252176822 | cyclic purine nucleotide metabolic process | biological_process | The chemical reactions and pathways involving a cyclic nucleotide, a nucleotide in which the phosphate group is in diester linkage to two positions on the sugar residue and the base is a purine. [CHEBI:36982]
18 | GO:0055071 | 0.0364892252176822 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
18 | GO:1900371 | 0.0364892252176822 | regulation of purine nucleotide biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of purine nucleotide biosynthetic processes. [GOC:go_curators, GOC:TermGenie]
18 | GO:0050832 | 0.0375966967913463 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
18 | GO:0009620 | 0.0387304719237908 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
18 | GO:0035556 | 0.0415772997081841 | intracellular signal transduction | biological_process | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:signaling, ISBN:[PHONE]]
18 | GO:0009750 | 0.0472483109905912 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
18 | GO:0051093 | 0.0472483109905912 | negative regulation of developmental process | biological_process | Any process that stops, prevents or reduces the rate or extent of development, the biological process whose specific outcome is the progression of an organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:ai]
18 | GO:0010466 | 0.0483577789944042 | negative regulation of peptidase activity | biological_process | Any process that stops or reduces the rate of peptidase activity, the hydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb]
18 | GO:0010555 | 0.0483577789944042 | response to mannitol stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [PMID:17999646]
18 | GO:0010951 | 0.0483577789944042 | negative regulation of endopeptidase activity | biological_process | Any process that decreases the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:dph, GOC:tb]
18 | GO:0015714 | 0.0483577789944042 | phosphoenolpyruvate transport | biological_process | The directed movement of phosphoenolpyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
18 | GO:0051325 | 0.0483577789944042 | interphase | biological_process | A cell cycle process comprising the steps by which a cell progresses through interphase, the stage of cell cycle between successive rounds of chromosome segregation. Canonically, interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. [GOC:dph, GOC:mah, http://www.onelook.com]
18 | GO:0051329 | 0.0483577789944042 | interphase of mitotic cell cycle | biological_process | Interphase occurring as part of the mitotic cell cycle. Canonically, interphase is the stage of the cell cycle during which the biochemical and physiologic functions of the cell are performed and replication of chromatin occurs. A mitotic cell cycle is one which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. [GOC:ai, GOC:dph, GOC:mah]
18 | GO:0051346 | 0.0483577789944042 | negative regulation of hydrolase activity | biological_process | Any process that stops or reduces the rate of hydrolase activity, the catalysis of the hydrolysis of various bonds. [GOC:ai]
18 | GO:0052547 | 0.0483577789944042 | regulation of peptidase activity | biological_process | Any process that modulates the frequency, rate or extent of peptidase activity, the hydrolysis of peptide bonds within proteins. [EC:3.4, GOC:ai]
18 | GO:0052548 | 0.0483577789944042 | regulation of endopeptidase activity | biological_process | Any process that modulates the frequency, rate or extent of endopeptidase activity, the endohydrolysis of peptide bonds within proteins. [GOC:ai, GOC:hjd]
18 | GO:0019827 | 0.0490391405532195 | stem cell maintenance | biological_process | The process in which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:mah, ISBN:[PHONE]]
19 | GO:0010207 | 0.00325013372253089 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
19 | GO:0010189 | 0.00325527428335769 | vitamin E biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:mg]
19 | [NAME] | 0.00472603264216006 | photosynthetic electron transport in photosystem I | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
19 | GO:0010075 | 0.00568360641848201 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
19 | [NAME] | 0.00680393656187432 | cellular calcium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of calcium ions at the level of a cell. [GOC:ceb, GOC:mah]
19 | GO:0010229 | 0.00680393656187432 | inflorescence development | biological_process | The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure. [GOC:tb]
19 | GO:0006098 | 0.00777704863709897 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
19 | GO:0009416 | 0.00800927453899732 | response to light stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, [NAME]]
19 | GO:0070838 | 0.00811462637137963 | divalent metal ion transport | biological_process | The directed movement of divalent metal cations, any metal ion with a +2 electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
19 | GO:0048653 | 0.00982863636783699 | anther development | biological_process | The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure. [GOC:jid, GOC:sm]
19 | GO:0006517 | 0.0127918132395696 | protein deglycosylation | biological_process | The removal of sugar residues from a glycosylated protein. [GOC:mah]
19 | GO:0008105 | 0.0127918132395696 | [NAME] | biological_process | Any process in which a protein is transported to, or maintained in, a specific location such that it is distributed asymmetrically. [GOC:ma]
19 | GO:0009098 | 0.0127918132395696 | leucine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai]
19 | GO:0010257 | 0.0127918132395696 | NADH dehydrogenase complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form an NADH dehydrogenase complex. [GOC:sm]
19 | GO:0010258 | 0.0127918132395696 | NADH dehydrogenase complex (plastoquinone) assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form NADH:plastoquinone dehydrogenase complex, which is involved in the non-photochemical reduction of plastoquinones, as well as the cyclic electron transport around photosystem I. [PMID:15608332]
19 | GO:0042177 | 0.0127918132395696 | negative regulation of protein catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:go_curators, GOC:jl, PMID:10207076]
19 | GO:0045176 | 0.0127918132395696 | apical protein localization | biological_process | Any process in which a protein is transported to, or maintained in, apical regions of the cell. [GOC:bf]
19 | GO:0009817 | 0.0133109778392739 | defense response to fungus, incompatible interaction | biological_process | A response of an organism to a fungus that prevents the occurrence or spread of disease. [GOC:lr]
19 | GO:0006814 | 0.0172655749396774 | sodium ion transport | biological_process | The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
19 | GO:0010817 | 0.0180475024059298 | regulation of hormone levels | biological_process | Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. [GOC:BHF, GOC:dph, GOC:tb]
19 | GO:0006000 | 0.0254220155328527 | fructose metabolic process | biological_process | The chemical reactions and pathways involving fructose, the ketohexose arabino-2-hexulose. Fructose exists in a open chain form or as a ring compound. D-fructose is the sweetest of the sugars and is found free in a large number of fruits and honey. [ISBN:[PHONE]]
19 | GO:0006624 | 0.0254220155328527 | vacuolar protein processing | biological_process | Protein processing that takes place in the vacuole. Most protein processing in the vacuole represents proteolytic cleavage of precursors to form active enzymes. [GOC:mah]
19 | GO:0009554 | 0.0254220155328527 | megasporogenesis | biological_process | The process in which the megasporocyte undergoes meiosis, giving rise to four haploid megaspores in the nucellus. [GOC:mtg_plant, GOC:tb]
19 | GO:0010201 | 0.0254220155328527 | response to continuous far red light stimulus by the high-irradiance response system | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence. [GOC:mtg_far_red, GOC:sm]
19 | GO:0030388 | 0.0254220155328527 | fructose 1,6-bisphosphate metabolic process | biological_process | The chemical reactions and pathways involving fructose 1,6-bisphosphate, also known as FBP. The D enantiomer is a metabolic intermediate in glycolysis and gluconeogenesis. [ISBN:[PHONE]]
19 | GO:0051704 | 0.025665825413416 | multi-organism process | biological_process | A biological process which involves another organism of the same or different species. [GOC:jl]
19 | GO:0016036 | 0.0256816321569082 | cellular response to phosphate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]
19 | GO:0009911 | 0.0264519580343957 | positive regulation of flower development | biological_process | Any process that activates or increases the frequency, rate or extent of flower development. [GOC:go_curators]
19 | GO:0009932 | 0.0276826478473287 | cell tip growth | biological_process | Growth that occurs specifically at the tip of a cell. [GOC:jid]
19 | GO:0001708 | 0.0289973569893823 | cell fate specification | biological_process | The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. [GOC:go_curators]
19 | GO:0051246 | 0.0296029345455346 | regulation of protein metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein. [GOC:ai]
19 | GO:0080167 | 0.0298732849796274 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
19 | GO:0010374 | 0.0318067286958567 | stomatal complex development | biological_process | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [PMID:17259259]
19 | GO:0006364 | 0.0321129919203181 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
19 | GO:0016072 | 0.0329785349009681 | rRNA metabolic process | biological_process | The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes. [ISBN:[PHONE]]
19 | GO:2000243 | 0.0343668747007365 | positive regulation of reproductive process | biological_process | Any process that activates or increases the frequency, rate or extent of reproductive process. [GOC:mah]
19 | GO:0006491 | 0.0378926231398291 | N-glycan processing | biological_process | The conversion of N-linked glycan (N = nitrogen) structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking. [ISBN:[PHONE], PMID:12736198]
19 | GO:0010158 | 0.0378926231398291 | abaxial cell fate specification | biological_process | The process in which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. [GOC:mg]
19 | GO:0010188 | 0.0378926231398291 | response to microbial phytotoxin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a microbial phytotoxin stimulus. A microbial phytotoxin is a chemical substance produced by microbes which is toxic to plants. [GOC:sm]
19 | GO:0015721 | 0.0378926231398291 | bile acid and bile salt transport | biological_process | The directed movement of bile acid and bile salts into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:krc, PMID:12663868, PMID:14699511]
19 | GO:0019405 | 0.0378926231398291 | alditol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
19 | GO:0019464 | 0.0378926231398291 | glycine decarboxylation via glycine cleavage system | biological_process | The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. [MetaCyc:GLYCLEAV-PWY]
19 | GO:0019563 | 0.0378926231398291 | glycerol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:go_curators, ISBN:[PHONE]]
19 | GO:0030026 | 0.0378926231398291 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
19 | GO:0032922 | 0.0378926231398291 | circadian regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours. [GOC:mah]
19 | GO:0043966 | 0.0378926231398291 | histone H3 acetylation | biological_process | The modification of histone H3 by the addition of an acetyl group. [GOC:jl]
19 | GO:0051592 | 0.0378926231398291 | response to calcium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. [GOC:ai]
19 | GO:0055071 | 0.0378926231398291 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
19 | GO:0050790 | 0.0384787151367193 | regulation of catalytic activity | biological_process | Any process that modulates the activity of an enzyme. [GOC:ai]
19 | GO:0010218 | 0.0392724713527042 | response to far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb]
19 | GO:0035303 | 0.0392724713527042 | regulation of dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule. [GOC:bf]
19 | GO:0035304 | 0.0392724713527042 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
19 | GO:0045165 | 0.0400899361587745 | cell fate commitment | biological_process | The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. [ISBN:[PHONE]]
19 | GO:0031668 | 0.041089044034957 | cellular response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:mah]
19 | GO:0009411 | 0.0423469214905809 | response to UV | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:hb]
19 | GO:0071496 | 0.0423469214905809 | cellular response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:mah]
19 | GO:0043086 | 0.0430774621498291 | negative regulation of catalytic activity | biological_process | Any process that stops or reduces the activity of an enzyme. [GOC:jl, GOC:tb]
19 | GO:0034470 | 0.0434692250517175 | ncRNA processing | biological_process | Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. [GOC:mah]
19 | GO:0031399 | 0.0436265270358851 | regulation of protein modification process | biological_process | Any process that modulates the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. [GOC:mah, GOC:tb]
19 | GO:0009620 | 0.04451218663575 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
19 | GO:0009607 | 0.0451427259816988 | response to biotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb]
19 | GO:0051707 | 0.0451427259816988 | response to other organism | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism. [GOC:ai]
19 | GO:0009736 | 0.0461455765104515 | cytokinin mediated signaling pathway | biological_process | A series of molecular signals induced by the detection of cytokinin. [GOC:sm]
19 | GO:0071368 | 0.0461455765104515 | cellular response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:mah]
19 | GO:0009991 | 0.047595658198414 | response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:go_curators]
19 | GO:0016109 | 0.0481201876033845 | tetraterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tetraterpenoid compounds, terpenoids with eight isoprene units. [GOC:go_curators]
19 | GO:0016117 | 0.0481201876033845 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
20 | GO:0009744 | 3.57209407313142e-06 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
20 | GO:0010207 | 1.05761882879219e-05 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
20 | GO:0006364 | 5.77818934304237e-05 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
20 | GO:0010218 | 0.000133461117998792 | response to far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb]
20 | GO:0042742 | 0.000160862537441587 | defense response to bacterium | biological_process | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]
20 | [NAME] | 0.000218682318803997 | photosynthetic electron transport in photosystem I | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
20 | GO:0009749 | 0.000268110929671127 | response to glucose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. [GOC:jl]
20 | GO:0009089 | 0.000355088260069258 | lysine biosynthetic process via diaminopimelate | biological_process | The chemical reactions and pathways resulting in the formation of lysine, via the intermediate diaminopimelate. [GOC:go_curators]
20 | GO:0009657 | 0.000458967221095574 | plastid organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plastid. [GOC:mah]
20 | GO:0035304 | 0.00071765061152543 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
20 | GO:0019853 | 0.0011820803527587 | L-ascorbic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions. [CHEBI:38290, GOC:ma, ISBN:[PHONE]]
20 | GO:0006007 | 0.00176173259390991 | glucose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose. [GOC:ai]
20 | GO:0006636 | 0.00197077765149479 | unsaturated fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms. [GOC:mah, MetaCyc:PWY-762, MetaCyc:PWY-782]
20 | GO:0009825 | 0.00201579087185386 | multidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes. [ISBN:[PHONE]]
20 | GO:0010073 | 0.0024905920447865 | meristem maintenance | biological_process | Any process involved in maintaining the identity, size and shape of a meristem. [GOC:tb]
20 | GO:0009932 | 0.00305450204970854 | cell tip growth | biological_process | Growth that occurs specifically at the tip of a cell. [GOC:jid]
20 | GO:0043085 | 0.00305450204970854 | positive regulation of catalytic activity | biological_process | Any process that activates or increases the activity of an enzyme. [GOC:jl, GOC:tb]
20 | GO:0009768 | 0.00329230178336747 | photosynthesis, light harvesting in photosystem I | biological_process | After a photon of light is absorbed by one of the many chlorophyll molecules, in one of the light-harvesting complexes of an antenna on photosystem I, some of the absorbed energy is transferred to the pair of chlorophyll molecules in the reaction center. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
20 | GO:0019464 | 0.00329230178336747 | glycine decarboxylation via glycine cleavage system | biological_process | The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. [MetaCyc:GLYCLEAV-PWY]
20 | GO:0019344 | 0.0034498666848368 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
20 | GO:0009926 | 0.00363859406648281 | auxin polar transport | biological_process | The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally. [GOC:sm]
20 | GO:0016126 | 0.00406580304380685 | sterol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators]
20 | GO:0009965 | 0.0043996776530531 | leaf morphogenesis | biological_process | The process in which the anatomical structures of the leaf are generated and organized. [GOC:go_curators]
20 | GO:0006084 | 0.00504380776426332 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
20 | GO:0009627 | 0.00571024228957527 | systemic acquired resistance | biological_process | The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. [GOC:lr, ISBN:052143641]
20 | GO:0042545 | 0.0058081731057505 | cell wall modification | biological_process | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl]
20 | GO:0016045 | 0.00643895665488634 | detection of bacterium | biological_process | The series of events in which a stimulus from a bacterium is received and converted into a molecular signal. [GOC:hb]
20 | GO:0071669 | 0.00646570601204077 | plant-type cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. [GOC:ecd, GOC:mah]
20 | GO:0008361 | 0.00662157755447026 | regulation of cell size | biological_process | Any process that modulates the size of a cell. [GOC:go_curators]
20 | GO:0009637 | 0.00743310360299204 | response to blue light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. [GOC:ai, GOC:mtg_far_red]
20 | GO:0019748 | 0.00767826633773622 | secondary metabolic process | biological_process | The chemical reactions and pathways resulting in many of the chemical changes of compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. In multicellular organisms secondary metabolism is generally carried out in specific cell types, and may be useful for the organism as a whole. In unicellular organisms, secondary metabolism is often used for the production of antibiotics or for the utilization and acquisition of unusual nutrients. [GOC:go_curators]
20 | GO:0030422 | 0.00821568077075431 | production of siRNA involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of RNA interference. [GOC:mah, PMID:11524674]
20 | [NAME] | 0.00899066700817809 | cellular biogenic amine metabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
20 | GO:0043481 | 0.00899066700817809 | anthocyanin accumulation in tissues in response to UV light | biological_process | The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
20 | GO:0000271 | 0.00909172834187565 | polysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
20 | GO:0006073 | 0.00909436009780045 | cellular glucan metabolic process | biological_process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues. [ISBN:[PHONE]]
20 | GO:0048509 | 0.0100802410129391 | regulation of meristem development | biological_process | Any process that modulates the frequency, rate or extent of meristem development, the biological process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure. [GOC:jid]
20 | GO:0010075 | 0.010343602292826 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
20 | GO:0042439 | 0.0104948689180886 | ethanolamine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving ethanolamine (2-aminoethanol) and compounds derived from it. [CHEBI:16000, GOC:mah]
20 | GO:0005982 | 0.011299909504957 | starch metabolic process | biological_process | The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose. [ISBN:[PHONE]]
20 | GO:0010114 | 0.0116283437981195 | response to red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm]
20 | GO:0015994 | 0.011949724354424 | chlorophyll metabolic process | biological_process | The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl]
20 | GO:0010304 | 0.0125973490882605 | PSII associated light-harvesting complex II catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. [GOC:mah, PMID:16157880]
20 | GO:0016143 | 0.013392257102133 | S-glycoside metabolic process | biological_process | The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
20 | GO:0019757 | 0.013392257102133 | glycosinolate metabolic process | biological_process | The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
20 | GO:0019760 | 0.013392257102133 | glucosinolate metabolic process | biological_process | The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. [CHEBI:24279, GOC:curators]
20 | GO:0007389 | 0.0143144788676617 | pattern specification process | biological_process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
20 | GO:0035266 | 0.0149257492670775 | meristem growth | biological_process | The increase in size or mass of a meristem, a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation. [GOC:bf, ISBN:[PHONE]]
20 | GO:1901615 | 0.0150793454351747 | organic hydroxy compound metabolic process | biological_process | The chemical reactions and pathways involving organic hydroxy compound. [GOC:pr, GOC:TermGenie]
20 | GO:0008356 | 0.0151268889462753 | asymmetric cell division | biological_process | The asymmetric division of cells to produce two daughter cells with different developmental potentials. It is of fundamental significance for the generation of cell diversity. [PMID:11672519]
20 | GO:0010315 | 0.0153960062964756 | auxin efflux | biological_process | The process involved in the transport of auxin out of the cell. [GOC:tair_curators]
20 | GO:0006098 | 0.0158132879868205 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
20 | GO:0006740 | 0.0158132879868205 | NADPH regeneration | biological_process | A metabolic process that generates a pool of NADPH by the reduction of NADP+. [GOC:mah]
20 | GO:0009735 | 0.0166963310064894 | response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl]
20 | [NAME] | 0.016738474185537 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
20 | GO:0007267 | 0.017073096776661 | cell-cell signaling | biological_process | Any process that mediates the transfer of information from one cell to another. [GOC:mah]
20 | GO:0006739 | 0.0177021346641154 | NADP metabolic process | biological_process | The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
20 | GO:0042445 | 0.0177021346641154 | hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. [CHEBI:24621, GOC:jl]
20 | GO:0052386 | 0.017921860756426 | cell wall thickening | biological_process | A type of cell wall modification in which the cell wall is reinforced and made thicker. [GOC:mtg_pamgo_17jul06]
20 | GO:0052543 | 0.017921860756426 | callose deposition in cell wall | biological_process | Any process in which callose is transported to, and/or maintained in, the cell wall. [NAME] is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
20 | GO:0046496 | 0.0187050845670972 | [NAME] process | biological_process | The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [ISBN:[PHONE]]
20 | GO:0009862 | 0.0196936537545354 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
20 | GO:0019362 | 0.0197481263902768 | [NAME] process | biological_process | The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl]
20 | GO:0019751 | 0.0198669529428202 | polyol metabolic process | biological_process | The chemical reactions and pathways involving a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. [CHEBI:26191, GOC:go_curators]
20 | GO:0009725 | 0.0206139213730907 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
20 | GO:0019725 | 0.0209159807268437 | cellular homeostasis | biological_process | Any process involved in the maintenance of an internal steady state at the level of the cell. [GOC:isa_complete, GOC:jl, ISBN:[PHONE]]
20 | [NAME] | 0.0209843647409257 | glutamine family amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. [GOC:ai]
20 | GO:0006778 | 0.0210631894430262 | porphyrin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
20 | GO:0033013 | 0.0210631894430262 | tetrapyrrole metabolic process | biological_process | The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
20 | GO:0072524 | 0.0219576267153729 | pyridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. [CHEBI:26421, GOC:mah]
20 | GO:0048588 | 0.0220873353680873 | developmental cell growth | biological_process | The growth of a cell, where growth contributes to the progression of the cell over time from one condition to another. [GOC:go_curators, GOC:isa_complete]
20 | GO:0016144 | 0.0227344458814547 | S-glycoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
20 | GO:0019758 | 0.0227344458814547 | glycosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
20 | GO:0019761 | 0.0227344458814547 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
20 | GO:0009651 | 0.0228293507063316 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
20 | [NAME] | 0.0231017713594642 | response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:sm]
20 | GO:0030003 | 0.0259279483629213 | cellular cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of cations at the level of a cell. [GOC:ceb, GOC:mah]
20 | GO:0065008 | 0.0261107998787335 | regulation of biological quality | biological_process | Any process that modulates a qualitative or quantitative trait of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc. [GOC:dph, GOC:isa_complete, GOC:mah, GOC:pr, GOC:vw]
20 | GO:0019637 | 0.0273829926372557 | organophosphate metabolic process | biological_process | The chemical reactions and pathways involving organophosphates, any phosphate-containing organic compound. [ISBN:[PHONE]]
20 | GO:0006733 | 0.0277498721824972 | oxidoreduction coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed. [GOC:mah]
20 | GO:0072593 | 0.0278410265252158 | reactive oxygen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah]
20 | GO:0043647 | 0.0286590682380734 | inositol phosphate metabolic process | biological_process | The chemical reactions and pathways involving inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. [CHEBI:24848, GOC:jl]
20 | GO:0006873 | 0.0294071036074264 | cellular ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of ions at the level of a cell. [GOC:mah]
20 | GO:0010015 | 0.0301655091935991 | root morphogenesis | biological_process | The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support. [GOC:sm, ISBN:[PHONE]]
20 | GO:0042743 | 0.0302784298564903 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
20 | GO:0044550 | 0.031064575028696 | secondary metabolite biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl]
20 | GO:0042440 | 0.031795099057423 | pigment metabolic process | biological_process | The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:jl, ISBN:[PHONE]]
20 | GO:0000913 | 0.033578509753858 | preprophase band assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the preprophase band, a dense band of microtubules that marks the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation. [GOC:clt, GOC:mah]
20 | GO:0006110 | 0.033578509753858 | regulation of glycolysis | biological_process | Any process that modulates the frequency, rate or extent of glycolysis. [GOC:go_curators]
20 | GO:0007105 | 0.033578509753858 | cytokinesis, site selection | biological_process | The process of marking the place where cytokinesis will occur. [GOC:mtg_cell_cycle]
20 | GO:0008285 | 0.033578509753858 | negative regulation of cell proliferation | biological_process | Any process that stops, prevents or reduces the rate or extent of cell proliferation. [GOC:go_curators]
20 | GO:0009092 | 0.033578509753858 | [NAME] process | biological_process | The chemical reactions and pathways involving homoserine, alpha-amino-gamma-hydroxybutyric acid, an intermediate in the biosynthesis of cystathionine, threonine and methionine. [GOC:go_curators, ISBN:[PHONE]]
20 | GO:0009722 | 0.033578509753858 | detection of cytokinin stimulus | biological_process | The series of events in which a cytokinin stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
20 | GO:0010047 | 0.033578509753858 | fruit dehiscence | biological_process | The process leading to the spontaneous opening of the fruit permitting the escape of seeds. [GOC:tb, ISBN:[PHONE]]
20 | GO:0010111 | 0.033578509753858 | glyoxysome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway. [GOC:tb]
20 | GO:0010241 | 0.033578509753858 | ent-kaurene oxidation to kaurenoic acid | biological_process | The three successive oxidations of the 4-methyl group of ent-kaurene to form ent-kaur-16-en-19-oate, kaurenoic acid. This process may be carried out entirely by the enzyme ent-kaurene oxidase. [[NAME], GOC:tb]
20 | GO:0010253 | 0.033578509753858 | UDP-rhamnose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [PMID:15134748]
20 | GO:0010266 | 0.033578509753858 | response to vitamin B1 | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus. [GOC:pz]
20 | GO:0010906 | 0.033578509753858 | regulation of glucose metabolic process | biological_process | Any process that modulates the rate, frequency or extent of glucose metabolism. Glucose metabolic processes are the chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. [GOC:BHF, GOC:tb]
20 | GO:0015729 | 0.033578509753858 | oxaloacetate transport | biological_process | The directed movement of oxaloacetate, the anion of oxobutanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
20 | GO:0015742 | 0.033578509753858 | alpha-ketoglutarate transport | biological_process | The directed movement of alpha-ketoglutarate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
20 | GO:0015959 | 0.033578509753858 | diadenosine polyphosphate metabolic process | biological_process | The chemical reactions and pathways involving diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached. [GOC:ai]
20 | GO:0015961 | 0.033578509753858 | diadenosine polyphosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of diadenosine polyphosphate, a derivative of the nucleoside adenosine with phosphate groups attached. [GOC:ai]
20 | GO:0015965 | 0.033578509753858 | diadenosine tetraphosphate metabolic process | biological_process | The chemical reactions and pathways involving diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached. [GOC:ai]
20 | GO:0015967 | 0.033578509753858 | diadenosine tetraphosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of diadenosine tetraphosphate, a derivative of the nucleoside adenosine with four phosphate groups attached. [GOC:ai]
20 | GO:0016233 | 0.033578509753858 | telomere capping | biological_process | A process in which telomeres are protected from degradation and fusion, thereby ensuring chromosome stability by protecting the ends from both degradation and from being recognized as damaged DNA. May be mediated by specific single- or double-stranded telomeric DNA binding proteins. [GOC:mah, GOC:rn, PMID:11349150, PMID:11352055]
20 | GO:0019279 | 0.033578509753858 | L-methionine biosynthetic process from L-homoserine via cystathionine | biological_process | The chemical reactions and pathways resulting in the formation of L-methionine from other compounds, including L-homoserine, via the intermediate cystathionine. [GOC:go_curators]
20 | GO:0019695 | 0.033578509753858 | [NAME] process | biological_process | The chemical reactions and pathways involving choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine. [GOC:jl, ISBN:[PHONE]]
20 | GO:0032352 | 0.033578509753858 | positive regulation of hormone metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving any hormone. [GOC:mah]
20 | GO:0033240 | 0.033578509753858 | positive regulation of cellular amine metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amines. [GOC:mah]
20 | GO:0033331 | 0.033578509753858 | ent-kaurene metabolic process | biological_process | The chemical reactions and pathways involving ent-kaur-16-ene. Ent-kaurene is a tetracyclic diterpenoid that is a precursor of several plant isoprenoids, including gibberellins. [GOC:mah, MetaCyc:PWY-5032, PMID:17064690]
20 | GO:0033478 | 0.033578509753858 | UDP-rhamnose metabolic process | biological_process | The chemical reactions and pathways involving UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [GOC:mah, PMID:15134748]
20 | GO:0033587 | 0.033578509753858 | shikimate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. [CHEBI:36208, GOC:mah]
20 | GO:0034097 | 0.033578509753858 | response to cytokine stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus. [GOC:sl]
20 | GO:0035019 | 0.033578509753858 | somatic stem cell maintenance | biological_process | The process in which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line. [GOC:bf, [NAME]]
20 | GO:0040009 | 0.033578509753858 | regulation of growth rate | biological_process | Any process that modulates the rate of growth of all or part of an organism. [GOC:mah]
20 | GO:0042425 | 0.033578509753858 | choline biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of choline (2-hydroxyethyltrimethylammonium), an amino alcohol that occurs widely in living organisms as a constituent of certain types of phospholipids and in the neurotransmitter acetylcholine. [GOC:jl, ISBN:[PHONE]]
20 | GO:0043470 | 0.033578509753858 | regulation of carbohydrate catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of carbohydrates. [GOC:mlg]
20 | GO:0043471 | 0.033578509753858 | regulation of cellular carbohydrate catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of carbohydrates, carried out by individual cells. [GOC:jl]
20 | GO:0045764 | 0.033578509753858 | positive regulation of cellular amino acid metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving amino acid. [GOC:go_curators]
20 | GO:0046167 | 0.033578509753858 | glycerol-3-phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:ai]
20 | GO:0046622 | 0.033578509753858 | positive regulation of organ growth | biological_process | Any process that activates or increases the frequency, rate or extent of growth of an organ of an organism. [GOC:bf, GOC:tb]
20 | [NAME] | 0.033578509753858 | barbed-end actin filament capping | biological_process | The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. [ISBN:071673706X]
20 | GO:0070291 | 0.033578509753858 | N-acylethanolamine metabolic process | biological_process | The chemical reactions and pathways involving N-acylethanolamines. An N-acylethanolamine is an ethanolamine substituted at nitrogen by an acyl group. [CHEBI:52640, GOC:elh, PMID:14634025, PMID:15878693]
20 | GO:0071265 | 0.033578509753858 | L-methionine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of L-methionine, the L-enantiomer of (2S)-2-amino-4-(methylsulfanyl)butanoic acid. [CHEBI:16643, GOC:ecd]
20 | GO:0071266 | 0.033578509753858 | 'de novo' L-methionine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of L-methionine, the L-enantiomer of (2S)-2-amino-4-(methylsulfanyl)butanoic acid, from simpler components. [CHEBI:16643, GOC:ecd]
20 | GO:0071345 | 0.033578509753858 | cellular response to cytokine stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus. [GOC:mah]
20 | GO:0071423 | 0.033578509753858 | malate transmembrane transport | biological_process | A process in which a malate ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
20 | GO:0090355 | 0.033578509753858 | positive regulation of auxin metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth. [GOC:tb]
20 | GO:0090358 | 0.033578509753858 | positive regulation of tryptophan metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [GOC:tb]
20 | GO:1901957 | 0.033578509753858 | regulation of cutin biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of cutin biosynthetic process. [GOC:tb, GOC:TermGenie, PMID:23243127]
20 | GO:1901959 | 0.033578509753858 | positive regulation of cutin biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of cutin biosynthetic process. [GOC:tb, GOC:TermGenie, PMID:23243127]
20 | GO:0071555 | 0.0341624875609745 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
20 | GO:0009616 | 0.0343332096712824 | virus induced gene silencing | biological_process | Specific posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes. This silencing is triggered by viral infection, and occurs through a specific decrease in the level of mRNA of both host and viral genes. [GOC:jl]
20 | GO:0052018 | 0.0343332096712824 | modulation by symbiont of RNA levels in host | biological_process | The alteration by an organism of the levels of RNA in the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
20 | [NAME] | 0.0343332096712824 | modulation of RNA levels in other organism involved in symbiotic interaction | biological_process | The alteration by an organism of the levels of RNA in a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
20 | GO:0006085 | 0.0345781922638475 | acetyl-CoA biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated. [GOC:go_curators]
20 | GO:0010540 | 0.0345781922638475 | [NAME] transport | biological_process | The unidirectional movement of auxin from the apex to base of an organ, including the shoot, leaf, primary root, or lateral root. [PMID:10677441]
20 | GO:0035384 | 0.0345781922638475 | thioester biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
20 | GO:0052482 | 0.0345781922638475 | defense response by cell wall thickening | biological_process | A type of cell wall modification, in which the cell wall is reinforced and made thicker, that occurs as part of the defense response of an organism. [GOC:mtg_pamgo_17jul06]
20 | GO:0052544 | 0.0345781922638475 | defense response by callose deposition in cell wall | biological_process | Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
20 | GO:0071616 | 0.0345781922638475 | acyl-CoA biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [GOC:cjk]
20 | GO:0009832 | 0.0351794043521734 | plant-type cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu]
20 | GO:0055082 | 0.0351794043521734 | cellular chemical homeostasis | biological_process | Any biological process involved in the maintenance of an internal steady state of a chemical at the level of the cell. [GOC:isa_complete, GOC:jid]
20 | GO:0035195 | 0.0363865133495821 | gene silencing by miRNA | biological_process | Downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [PMID:14744438, PMID:15066275, PMID:15066283]
20 | GO:0030154 | 0.0368628708407353 | cell differentiation | biological_process | The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:[PHONE]]
20 | GO:0015995 | 0.0372547205196445 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
20 | GO:0010224 | 0.0373978739961747 | response to UV-B | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm. [GOC:tb]
20 | GO:0006970 | 0.0377468685400572 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
20 | GO:0009755 | 0.039486181178713 | hormone-mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of a hormone. [GOC:sm]
20 | GO:0051607 | 0.0415280407898962 | defense response to virus | biological_process | Reactions triggered in response to the presence of a virus that act to protect the cell or organism. [GOC:ai]
20 | GO:0045229 | 0.0420098666546542 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
20 | GO:0042214 | 0.042282589812294 | [NAME] process | biological_process | The chemical reactions and pathways involving terpenes, any of a large group of hydrocarbons that are made up of isoprene (C5H8) units which may be cyclic, acyclic or multicyclic, saturated or unsaturated, and may contain various functional groups. [CHEBI:35186, GOC:curators]
20 | GO:0043467 | 0.042282589812294 | regulation of generation of precursor metabolites and energy | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and the processes involved in the liberation of energy from these substances. [GOC:jl]
20 | GO:0035821 | 0.0439846069615951 | modification of morphology or physiology of other organism | biological_process | The process in which an organism effects a change in the structure or processes of a second organism. [GOC:bf]
20 | GO:0044003 | 0.0439846069615951 | modification by symbiont of host morphology or physiology | biological_process | The process in which an organism effects a change in the structure or processes of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:cc]
20 | GO:0051817 | 0.0439846069615951 | modification of morphology or physiology of other organism involved in symbiotic interaction | biological_process | The process in which an organism effects a change in the structure or processes of a second organism, where the two organisms are in a symbiotic interaction. [GOC:cc]
20 | GO:0051186 | 0.0451487602596535 | cofactor [NAME] process | biological_process | The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. [GOC:ai]
20 | GO:0010267 | 0.047506709950832 | production of ta-siRNAs involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs. [GOC:tb, PMID:16129836]
20 | GO:0048469 | 0.0481278305442319 | cell maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state. [GOC:go_curators]
20 | GO:0048764 | 0.0481278305442319 | trichoblast maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a trichoblast cell to attain its fully functional state. [GOC:jid]
20 | GO:0048765 | 0.0481278305442319 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
21 | GO:0010075 | 3.26102749200815e-08 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
21 | GO:0007169 | 9.44313551227337e-07 | [NAME] receptor [NAME] signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:ceb, GOC:signaling]
21 | GO:0009855 | 6.14850600054335e-05 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
21 | GO:0009944 | 9.27267696348944e-05 | polarity specification of adaxial/abaxial axis | biological_process | The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
21 | GO:0009965 | 0.000108330700014461 | leaf morphogenesis | biological_process | The process in which the anatomical structures of the leaf are generated and organized. [GOC:go_curators]
21 | GO:0010051 | 0.000402116447035027 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
21 | GO:0010014 | 0.000447389760274263 | meristem initiation | biological_process | Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm]
21 | [NAME] | 0.00066965269805389 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
21 | GO:0048439 | 0.00102755609941385 | flower morphogenesis | biological_process | The process in which the anatomical structures of the flower are generated and organized. [GOC:go_curators]
21 | GO:0000097 | 0.00110558640318667 | sulfur amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine. [GOC:ai]
21 | GO:0048481 | 0.00121938122389797 | ovule development | biological_process | The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. [GOC:tb]
21 | GO:0048609 | 0.00171171645772085 | multicellular organismal reproductive process | biological_process | The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. [GOC:dph, GOC:jid, GOC:tb]
21 | GO:0009832 | 0.00207514894045407 | plant-type cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu]
21 | GO:0008361 | 0.00222512295424323 | regulation of cell size | biological_process | Any process that modulates the size of a cell. [GOC:go_curators]
21 | GO:0044702 | 0.00250025301242888 | single organism reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals, involving a single organism. [GOC:jl]
21 | GO:1901607 | 0.00276983601306431 | alpha-amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alpha-amino acid. [GOC:TermGenie]
21 | GO:0030154 | 0.00380056551726955 | cell differentiation | biological_process | The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state. [ISBN:[PHONE]]
21 | GO:0009070 | 0.00574547826853974 | [NAME] amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
21 | GO:0000272 | 0.00602040593342139 | polysaccharide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
21 | GO:0010089 | 0.00602040593342139 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
21 | GO:0000902 | 0.0103830083288158 | cell morphogenesis | biological_process | The developmental process in which the size or shape of a cell is generated and organized. [GOC:clt, GOC:dph, GOC:go_curators, GOC:tb]
21 | GO:0010431 | 0.0110380149278398 | seed maturation | biological_process | A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation, acquisition of desiccation tolerance, growth arrest and the entry into a dormancy period of variable length that is broken upon germination. [PMID:16096971]
21 | GO:0016126 | 0.0117324461500962 | sterol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators]
21 | GO:0010492 | 0.0118099337113504 | maintenance of shoot apical meristem identity | biological_process | The process in which an organism retains a population of shoot apical meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:dph, GOC:tb, PMID:17461786]
21 | GO:0016125 | 0.0124571876158477 | [NAME] process | biological_process | The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:[PHONE]]
21 | GO:0032989 | 0.0126023246856934 | cellular component morphogenesis | biological_process | The process in which cellular structures, including whole cells or cell parts, are generated and organized. [GOC:dph, GOC:mah, GOC:tb]
21 | GO:0007020 | 0.013920016193747 | microtubule nucleation | biological_process | The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. [NAME] nucleation usually occurs from a specific site within a cell. [ISBN:[PHONE]]
21 | GO:0006091 | 0.0143792817359209 | generation of precursor metabolites and energy | biological_process | The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances. [GOC:jl]
21 | GO:0006793 | 0.0145446114680603 | phosphorus metabolic process | biological_process | The chemical reactions and pathways involving the nonmetallic element phosphorus or compounds that contain phosphorus, usually in the form of a phosphate group ([NAME]). [GOC:ai]
21 | GO:0045595 | 0.0149701408312319 | regulation of cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of cell differentiation, the process in which relatively unspecialized cells acquire specialized structural and functional features. [GOC:go_curators]
21 | GO:0031507 | 0.0154922067065268 | heterochromatin assembly | biological_process | The assembly of chromatin into heterochromatin, a compact and highly condensed form that is often, but not always, transcriptionally silent. [GOC:mah]
21 | GO:0070828 | 0.0154922067065268 | heterochromatin organization | biological_process | Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic heterochromatin, a compact and highly condensed form of chromatin. [GOC:mah]
21 | GO:0006644 | 0.0156687849721976 | phospholipid metabolic process | biological_process | The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
21 | GO:0046686 | 0.0165949613413149 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
21 | GO:0022622 | 0.0168551647468915 | root system development | biological_process | The process whose specific outcome is the progression of the root system over time, from its formation to the mature structure. [GOC:isa_complete]
21 | GO:0048364 | 0.0168551647468915 | root development | biological_process | The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. [GOC:jid, PO:0009005]
21 | GO:0006096 | 0.017336327280971 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
21 | GO:0044724 | 0.018118944291963 | single-organism carbohydrate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of carbohydrates, occurring within a single organism. [GOC:jl]
21 | GO:0019344 | 0.0181527914396309 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
21 | [NAME] | 0.0183817294616181 | cellular metal ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of metal ions at the level of a cell. [GOC:ai, GOC:mah]
21 | GO:0010074 | 0.0183817294616181 | maintenance of meristem identity | biological_process | The process in which an organism retains a population of meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:tb]
21 | [NAME] | 0.0189960068978073 | [NAME] process | biological_process | The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
21 | GO:0010038 | 0.0189961982701196 | response to metal ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. [GOC:sm]
21 | GO:0006694 | 0.0194215738623547 | steroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators]
21 | GO:0010817 | 0.0202393481437785 | regulation of hormone levels | biological_process | Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. [GOC:BHF, GOC:dph, GOC:tb]
21 | GO:0007017 | 0.0208655962186331 | microtubule-based process | biological_process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. [GOC:mah]
21 | GO:0009086 | 0.0211658594539317 | methionine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
21 | GO:0016128 | 0.0211658594539317 | phytosteroid metabolic process | biological_process | The chemical reactions and pathways involving phytosteroids, steroids of higher plants that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. [GOC:mah, ISBN:[PHONE]]
21 | GO:0016129 | 0.0211658594539317 | phytosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytosteroids, steroids that differ from animal steroids in having substitutions at C24 and/or a double bond at C22. Phytosteroids are so named because they occur in higher plants; some, notably ergosterol, are also found in fungi. [GOC:go_curators, GOC:mah, ISBN:[PHONE]]
21 | GO:0016131 | 0.0211658594539317 | [NAME] process | biological_process | The chemical reactions and pathways involving brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
21 | [NAME] | 0.0211658594539317 | brassinosteroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of brassinosteroids, any of a group of steroid derivatives that occur at very low concentrations in plant tissues and may have hormone-like effects. [ISBN:[PHONE]]
21 | GO:0048468 | 0.0215340782803619 | cell development | biological_process | The process whose specific outcome is the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. [GOC:go_curators]
21 | GO:0042545 | 0.021958967242285 | cell wall modification | biological_process | The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly. [GOC:jl]
21 | GO:0048443 | 0.021958967242285 | stamen development | biological_process | The process whose specific outcome is the progression of the stamen over time, from its formation to the mature structure. [GOC:go_curators]
21 | GO:0048466 | 0.021958967242285 | androecium development | biological_process | The process whose specific outcome is the progression of the androecium over time, from its formation to the mature structure. [GOC:go_curators]
21 | GO:0009934 | 0.0241026646507921 | regulation of meristem structural organization | biological_process | Any process that modulates the frequency, rate or extent of meristem organization. [GOC:jid]
21 | GO:0009926 | 0.0246050319908969 | auxin polar transport | biological_process | The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally. [GOC:sm]
21 | GO:0010162 | 0.0246906223067139 | seed dormancy process | biological_process | A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors. [GOC:lr, GOC:PO_curators, ISBN:[PHONE], PO_REF:00009]
21 | GO:0022611 | 0.0246906223067139 | dormancy process | biological_process | A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated. [GOC:isa_complete, GOC:PO_curators, PO_REF:00009]
21 | GO:0001763 | 0.0247841381517073 | morphogenesis of a branching structure | biological_process | The process in which the anatomical structures of branches are generated and organized. A branch is a division or offshoot from a main stem. Examples in animals would include blood vessels, nerves, lymphatics and other endothelial or epithelial tubes. [ISBN:[PHONE]]
21 | GO:0006564 | 0.0247841381517073 | L-serine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of L-serine, the L-enantiomer of serine, i.e. (2S)-2-amino-3-hydroxypropanoic acid. [[NAME], GOC:ai, GOC:jsg]
21 | GO:0006842 | 0.0247841381517073 | tricarboxylic acid transport | biological_process | The directed movement of tricarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
21 | GO:0010223 | 0.0247841381517073 | secondary shoot formation | biological_process | The process that gives rise to secondary (or auxiliary or axillary) shoots in plants. This process pertains to the initial formation of a structure from unspecified parts. These secondary shoots originate from secondary meristems initiated in the axils of leaf primordia. Axillary meristems function like the shoot apical meristem of the primary shoot initating the development of lateral organs. [GOC:tb, PMID:12815068]
21 | GO:0010346 | 0.0247841381517073 | shoot axis formation | biological_process | The process that gives rise to a shoot axis. This process pertains to the initial formation of a structure from unspecified parts. [GOC:tb]
21 | GO:0010358 | 0.0247841381517073 | leaf shaping | biological_process | The developmental process that pertains to the organization of a leaf in three-dimensional space once the structure has initially formed. [GOC:tb, PMID:16971475]
21 | GO:0010480 | 0.0247841381517073 | microsporocyte differentiation | biological_process | The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell. [CL:0000248, PMID:16751349]
21 | GO:0035674 | 0.0247841381517073 | tricarboxylic acid transmembrane transport | biological_process | The process in which tricarboxylic acids are transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:vw]
21 | GO:0042759 | 0.0247841381517073 | long-chain fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of long-chain fatty acids, any fatty acid with a chain length between C13 and C22. [CHEBI:15904, GOC:go_curators]
21 | GO:0043181 | 0.0247841381517073 | vacuolar sequestering | biological_process | The process of transporting a substance into, and confining within, a vacuole. [GOC:jl]
21 | GO:0043182 | 0.0247841381517073 | vacuolar sequestering of sodium ion | biological_process | The process of transporting sodium ions into, and confining within, a vacuole. [GOC:jl]
21 | GO:1901668 | 0.0247841381517073 | regulation of superoxide dismutase activity | biological_process | Any process that modulates the frequency, rate or extent of superoxide dismutase activity. [GOC:TermGenie]
21 | GO:1901671 | 0.0247841381517073 | positive regulation of superoxide dismutase activity | biological_process | Any process that activates or increases the frequency, rate or extent of superoxide dismutase activity. [GOC:TermGenie]
21 | GO:0008202 | 0.0249152881346369 | steroid metabolic process | biological_process | The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:[PHONE]]
21 | GO:0032880 | 0.0255714558905605 | regulation of protein localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location. [GOC:dph, GOC:mah, GOC:tb]
21 | GO:0006555 | 0.0264439781711699 | [NAME] process | biological_process | The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
21 | GO:0008654 | 0.0266005433683394 | phospholipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
21 | GO:0006007 | 0.0271095648248585 | glucose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose. [GOC:ai]
21 | GO:0009913 | 0.0274850517632625 | epidermal cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis. [GOC:dph, GOC:go_curators, GOC:mtg_sensu, GOC:sdb_2009, GOC:tb]
21 | GO:0030855 | 0.0274850517632625 | epithelial cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium. [GOC:ecd, PMID:11839751]
21 | GO:0060429 | 0.0274850517632625 | epithelium development | biological_process | The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. [GOC:dph, GOC:mtg_lung]
21 | GO:0019320 | 0.0278737724650644 | hexose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
21 | GO:0046365 | 0.0278737724650644 | monosaccharide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
21 | GO:0009914 | 0.028363372735478 | hormone transport | biological_process | The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:tb]
21 | GO:0060918 | 0.028363372735478 | auxin transport | biological_process | The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb]
21 | GO:0008544 | 0.0283901794257261 | epidermis development | biological_process | The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species. [GOC:go_curators, UBERON:0001003]
21 | GO:0016049 | 0.0286534619521525 | cell growth | biological_process | The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. [GOC:ai]
21 | GO:0045787 | 0.0289858172720481 | positive regulation of cell cycle | biological_process | Any process that activates or increases the rate or extent of progression through the cell cycle. [GOC:go_curators]
21 | GO:0006084 | 0.0303637576150504 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
21 | GO:0051258 | 0.0303637576150504 | protein polymerization | biological_process | The process of creating protein polymers, compounds composed of a large number of component monomers; [NAME] may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. [GOC:ai]
21 | GO:0010035 | 0.0306850561651245 | response to inorganic substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. [GOC:sm]
21 | GO:0005996 | 0.0307485333997675 | monosaccharide metabolic process | biological_process | The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. [ISBN:[PHONE]]
21 | GO:0010026 | 0.030788046847796 | trichome differentiation | biological_process | The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, PMID:9367433]
21 | GO:0048508 | 0.031087475704914 | [NAME] development | biological_process | The process whose specific outcome is the progression of the embryonic meristem over time, from its formation to the mature structure. [GOC:jid]
21 | GO:0006006 | 0.0311057947412808 | [NAME] process | biological_process | The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:[PHONE]]
21 | GO:0007010 | 0.031930116930031 | cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah]
21 | GO:0008610 | 0.0320736671978483 | lipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators]
21 | GO:0006637 | 0.0324455847407822 | acyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [ISBN:[PHONE]]
21 | GO:0035383 | 0.0324455847407822 | [NAME] process | biological_process | The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
21 | GO:0042221 | 0.0331466081076872 | response to chemical stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. [GOC:jl]
21 | GO:0010015 | 0.0334346384242686 | root morphogenesis | biological_process | The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support. [GOC:sm, ISBN:[PHONE]]
21 | GO:0019827 | 0.0340608089194515 | stem cell maintenance | biological_process | The process in which an organism retains a population of stem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:mah, ISBN:[PHONE]]
21 | GO:0002238 | 0.0342256441837073 | response to molecule of fungal origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octamer oligosaccharide. [GOC:rl, GOC:sm]
21 | GO:0006796 | 0.0346760932968889 | phosphate-containing compound metabolic process | biological_process | The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. [GOC:ai]
21 | GO:0007059 | 0.0368549321245144 | chromosome segregation | biological_process | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the alignment of chromosomes at the metaphase plate, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. [GOC:ai, GOC:mah]
21 | GO:0045596 | 0.0371764092513475 | negative regulation of cell differentiation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cell differentiation. [GOC:go_curators]
21 | GO:0048864 | 0.0371764092513475 | stem cell development | biological_process | The process whose specific outcome is the progression of the stem cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to its specific fate. [CL:0000034, GOC:isa_complete]
21 | GO:0055065 | 0.0371764092513475 | metal ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of metal ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
21 | GO:0009067 | 0.0391829196573932 | aspartate family amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. [GOC:ai]
21 | GO:0022603 | 0.0391829196573932 | regulation of anatomical structure morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. [GOC:mah]
21 | GO:0031497 | 0.0398017076946245 | chromatin assembly | biological_process | The assembly of DNA, histone proteins, other associated proteins, and sometimes RNA, into chromatin structure, beginning with the formation of the basic unit, the nucleosome, followed by organization of the nucleosomes into higher order structures, ultimately giving rise to a complex organization of specific domains within the nucleus. [http://www.infobiogen.fr/services/chromcancer/IntroItems/ChromatinEducEng.html, PMID:20404130]
21 | GO:0048863 | 0.0404330296865134 | stem cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. [CL:0000034, GOC:isa_complete]
21 | GO:0019318 | 0.0415662192265272 | hexose metabolic process | biological_process | The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
21 | GO:0048825 | 0.0438292141549524 | cotyledon development | biological_process | The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
21 | GO:0043473 | 0.0440860608569333 | pigmentation | biological_process | The deposition or aggregation of coloring matter in an organism, tissue or cell. [GOC:jl]
21 | GO:0043476 | 0.0440860608569333 | pigment accumulation | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to some external stimulus. [GOC:jl]
21 | GO:0043478 | 0.0440860608569333 | pigment accumulation in response to UV light | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to a UV light stimulus. [GOC:jl]
21 | GO:0043479 | 0.0440860608569333 | pigment accumulation in tissues in response to UV light | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
21 | GO:0043480 | 0.0440860608569333 | pigment accumulation in tissues | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to an external stimulus. [GOC:jl]
21 | GO:0043481 | 0.0440860608569333 | anthocyanin accumulation in tissues in response to UV light | biological_process | The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
21 | GO:0006633 | 0.0456231077630685 | fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:[PHONE]]
21 | GO:0019288 | 0.0466130504662135 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
21 | GO:0019682 | 0.0466130504662135 | glyceraldehyde-3-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis. [GOC:ai, ISBN:[PHONE]]
21 | GO:0006090 | 0.0482015355421719 | pyruvate metabolic process | biological_process | The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators]
21 | GO:0046165 | 0.0482015355421719 | alcohol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, GOC:ai]
21 | GO:0006657 | 0.0489578881255733 | CDP-choline pathway | biological_process | The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine. [ISBN:[PHONE], MetaCyc:PWY3O-450]
21 | GO:0006883 | 0.0489578881255733 | cellular sodium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of sodium ions at the level of a cell. [GOC:ai, GOC:mah]
21 | GO:0010082 | 0.0489578881255733 | regulation of root meristem growth | biological_process | Any process involved in maintaining the size and shape of a root meristem. [GOC:tb]
21 | GO:0015692 | 0.0489578881255733 | lead ion transport | biological_process | The directed movement of lead (Pb) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
21 | GO:0032877 | 0.0489578881255733 | positive regulation of DNA endoreduplication | biological_process | Any process that activates or increases the frequency, rate or extent of DNA endoreduplication. [GOC:mah]
21 | GO:0045740 | 0.0489578881255733 | positive regulation of DNA replication | biological_process | Any process that activates or increases the frequency, rate or extent of DNA replication. [GOC:go_curators]
21 | GO:0048826 | 0.0489578881255733 | cotyledon morphogenesis | biological_process | The process in which the anatomical structures of the cotyledon are generated and organized. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
21 | GO:0051341 | 0.0489578881255733 | regulation of oxidoreductase activity | biological_process | Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [EC:1.-.-.-, GOC:ai]
21 | GO:0051353 | 0.0489578881255733 | positive regulation of oxidoreductase activity | biological_process | Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. [GOC:ai]
21 | GO:0055078 | 0.0489578881255733 | sodium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of sodium ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
21 | GO:0071421 | 0.0489578881255733 | manganese ion transmembrane transport | biological_process | A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
21 | GO:0080060 | 0.0489578881255733 | integument development | biological_process | The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex. [NAME], PO:0020021]
21 | GO:2000105 | 0.0489578881255733 | positive regulation of DNA-dependent DNA replication | biological_process | Any process that activates or increases the frequency, rate or extent of DNA-dependent DNA replication. [GOC:mah]
21 | GO:2000379 | 0.0489578881255733 | positive regulation of reactive oxygen species metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
21 | GO:0009240 | 0.0498242658388062 | isopentenyl diphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. [GOC:jl, ISBN:[PHONE]]
21 | GO:0046490 | 0.0498242658388062 | isopentenyl diphosphate metabolic process | biological_process | The chemical reactions and pathways involving isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. [ISBN:[PHONE]]
22 | GO:0006412 | 7.86409138282119e-07 | translation | biological_process | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]
22 | GO:0080129 | 7.52895176577433e-05 | proteasome core complex assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. [PMID:12401807, PMID:17971041]
22 | GO:0046686 | 0.000203308394659735 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
22 | GO:0006120 | 0.000284609150319647 | mitochondrial electron transport, NADH to ubiquinone | biological_process | The transfer of electrons from NADH to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex I. [ISBN:[PHONE]]
22 | GO:0006511 | 0.000310291805062405 | ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators]
22 | GO:0051788 | 0.000441028917144981 | response to misfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus. [GOC:go_curators]
22 | GO:0006606 | 0.000819598772765504 | protein import into nucleus | biological_process | The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl]
22 | GO:0046398 | 0.000844358688444091 | UDP-glucuronate metabolic process | biological_process | The chemical reactions and pathways involving UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. [GOC:ai]
22 | GO:0009853 | 0.00096071846807997 | photorespiration | biological_process | A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:[PHONE]]
22 | GO:0000462 | 0.00167001388221098 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Any process involved in the maturation of a precursor [NAME] (SSU) ribosomal RNA (rRNA) molecule into a mature SSU-rRNA molecule from the pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small Subunit (SSU) rRNA, 5.8S rRNA, and the Large Subunit (LSU) in that order from 5' to 3' along the primary transcript. [GOC:curators]
22 | GO:0001510 | 0.00172043093323719 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
22 | GO:0006096 | 0.00225801093508978 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
22 | GO:0009220 | 0.00438988195905695 | pyrimidine ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0006414 | 0.00504088317323995 | translational elongation | biological_process | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems]
22 | GO:0009060 | 0.00654967398078956 | aerobic respiration | biological_process | The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:jl, ISBN:[PHONE]]
22 | GO:0009150 | 0.00869906770051023 | purine ribonucleotide metabolic process | biological_process | The chemical reactions and pathways involving a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0006833 | 0.0136290065933796 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
22 | [NAME] | 0.0136290065933796 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
22 | GO:0009226 | 0.0141660816237788 | nucleotide-sugar biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:[PHONE]]
22 | GO:0006164 | 0.0164341293496223 | purine nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0042991 | 0.016812981455555 | transcription factor import into nucleus | biological_process | The directed movement of a transcription factor from the cytoplasm to the nucleus. [GOC:jl]
22 | GO:0000913 | 0.0169491525424093 | preprophase band assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the preprophase band, a dense band of microtubules that marks the position in the cell where cytokinesis will occur in cells that perform cytokinesis by cell plate formation. [GOC:clt, GOC:mah]
22 | GO:0007105 | 0.0169491525424093 | cytokinesis, site selection | biological_process | The process of marking the place where cytokinesis will occur. [GOC:mtg_cell_cycle]
22 | GO:0010479 | 0.0169491525424093 | stele development | biological_process | The process whose specific outcome is the progression of the stele over time, from its formation to the mature structure. The stele is the central column of primary vascular tissue in the root and any tissue that it surrounds. [GOC:tb]
22 | [NAME] | 0.0169491525424093 | regulation of cytoplasmic mRNA processing body assembly | biological_process | Any process that modulates the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. [GOC:dph, GOC:krc, GOC:tb]
22 | GO:0010606 | 0.0169491525424093 | positive regulation of cytoplasmic mRNA processing body assembly | biological_process | Any process that increases the rate, frequency, or extent of the aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. [GOC:dph, GOC:krc, GOC:tb]
22 | GO:0015744 | 0.0169491525424093 | succinate transport | biological_process | The directed movement of succinate, the dianion of ethane dicarboxylic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
22 | GO:0031554 | 0.0169491525424093 | regulation of DNA-dependent transcription, termination | biological_process | Any process that modulates the frequency, rate, extent, or location of DNA-dependent transcription termination, the process in which transcription is completed; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. [GOC:mlg, GOC:txnOH]
22 | GO:0031555 | 0.0169491525424093 | transcriptional attenuation | biological_process | Regulation of transcription through variation in where transcription termination occurs. [GOC:dh, GOC:mlg, ISBN:[PHONE]]
22 | GO:0031564 | 0.0169491525424093 | transcription antitermination | biological_process | Regulation of transcription by a mechanism that allows [NAME] polymerase to continue transcription beyond a termination site. [ISBN:[PHONE], PMID:12456320]
22 | GO:0033962 | 0.0169491525424093 | [NAME] processing body assembly | biological_process | The aggregation, arrangement and bonding together of proteins and RNA molecules to form a cytoplasmic mRNA processing body. [GOC:mah, PMID:17429074]
22 | GO:0043433 | 0.0169491525424093 | negative regulation of sequence-specific DNA binding transcription factor activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. [GOC:jl]
22 | GO:0046677 | 0.0169491525424093 | response to antibiotic | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms. [GOC:ai, GOC:ef]
22 | GO:0051090 | 0.0169491525424093 | regulation of sequence-specific DNA binding transcription factor activity | biological_process | Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. [GOC:ai]
22 | GO:0052573 | 0.0169491525424093 | UDP-D-galactose metabolic process | biological_process | The chemical reactions and pathways involving UDP-D-galactose, a substance composed of D-galactose in glycosidic linkage with guanosine diphosphate. [GOC:ai]
22 | GO:0071422 | 0.0169491525424093 | [NAME] | biological_process | A process in which a succinate ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
22 | GO:1900457 | 0.0169491525424093 | regulation of brassinosteroid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of brassinosteroid mediated signaling pathway. [GOC:TermGenie, PMID:21855796]
22 | GO:1900459 | 0.0169491525424093 | positive regulation of brassinosteroid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of brassinosteroid mediated signaling pathway. [GOC:TermGenie, PMID:21855796]
22 | [NAME] | 0.0169491525424093 | regulation of organelle assembly | biological_process | Any process that modulates the frequency, rate or extent of organelle assembly. [GOC:pr, GOC:TermGenie]
22 | GO:1902117 | 0.0169491525424093 | positive regulation of organelle assembly | biological_process | Any process that activates or increases the frequency, rate or extent of organelle assembly. [GOC:pr, GOC:TermGenie]
22 | GO:0010305 | 0.019652398513205 | leaf vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the leaf of vascular plants. [GOC:tair_curators]
22 | GO:0010311 | 0.019652398513205 | lateral root formation | biological_process | The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators, PMID:17259263]
22 | GO:0009741 | 0.0209092747118709 | response to brassinosteroid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus. [GOC:jl]
22 | GO:0048366 | 0.0221486889187762 | leaf development | biological_process | The process whose specific outcome is the progression of the leaf over time, from its formation to the mature structure. [GOC:go_curators]
22 | GO:0072522 | 0.0225350006858069 | purine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof. [CHEBI:26401, GOC:mah]
22 | GO:0042278 | 0.0249583044464735 | purine nucleoside metabolic process | biological_process | The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:jl, ISBN:[PHONE]]
22 | GO:0046128 | 0.0249583044464735 | purine ribonucleoside metabolic process | biological_process | The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. [GOC:ai]
22 | GO:0034655 | 0.0253712152269494 | nucleobase-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:mah]
22 | GO:0009119 | 0.0255917953827892 | ribonucleoside metabolic process | biological_process | The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. [CHEBI:18254, GOC:jl]
22 | GO:0009116 | 0.0268925228065342 | nucleoside metabolic process | biological_process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma]
22 | GO:0046364 | 0.0269136025561058 | monosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
22 | GO:0009608 | 0.0292550840084892 | response to symbiont | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiont, an organism living with an organism of a different species in close physical association. The symbiont is defined as the smaller of the organisms involved in a symbiotic interaction. [GOC:hb, ISBN:[PHONE]]
22 | GO:0009610 | 0.0292550840084892 | response to symbiotic fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a symbiotic fungus, a fungus living in close physical association with another organism. [GOC:hb, ISBN:[PHONE]]
22 | GO:0010101 | 0.0292550840084892 | post-embryonic root morphogenesis | biological_process | The process in which the anatomical structures of the post-embryonic root are generated and organized. The post-embryonic root is the root formed after the embryonic phase has been completed. [GOC:tb]
22 | GO:0010102 | 0.0292550840084892 | lateral root morphogenesis | biological_process | The process in which the anatomical structures of a lateral root are generated and organized. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators]
22 | GO:0010051 | 0.0297084492731079 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
22 | GO:0048827 | 0.0309262495334093 | phyllome development | biological_process | The process whose specific outcome is the progression of a phyllome over time, from its formation to the mature structure. A phyllome is a collective term for all the different types of leaves appearing on plants. [GOC:devbiol, GOC:tb, PO:0006001]
22 | GO:0009651 | 0.0316977136984441 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
22 | GO:0019439 | 0.0325994316557289 | aromatic compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai]
22 | GO:0006011 | 0.0336136959344149 | UDP-glucose metabolic process | biological_process | The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai]
22 | GO:0006065 | 0.0336136959344149 | UDP-glucuronate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. [GOC:ai]
22 | GO:0006353 | 0.0336136959344149 | DNA-dependent transcription, termination | biological_process | The cellular process that completes DNA-dependent transcription; the formation of phosphodiester bonds ceases, the RNA-DNA hybrid dissociates, and RNA polymerase releases the DNA. [GOC:txnOH, ISBN:[PHONE], PMID:15020047, PMID:18280161]
22 | GO:0006529 | 0.0336136959344149 | asparagine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid. [GOC:go_curators]
22 | GO:0010589 | 0.0336136959344149 | leaf proximal/distal pattern formation | biological_process | The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis. [PMID:18398054]
22 | GO:0015976 | 0.0336136959344149 | carbon utilization | biological_process | A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism. [GOC:mah, GOC:mlg]
22 | GO:0019433 | 0.0336136959344149 | triglyceride catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a triglyceride, any triester of glycerol. [ISBN:[PHONE]]
22 | GO:0042754 | 0.0336136959344149 | negative regulation of circadian rhythm | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
22 | GO:0046461 | 0.0336136959344149 | neutral lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity. [GOC:ai]
22 | GO:0046464 | 0.0336136959344149 | acylglycerol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids. [GOC:ai]
22 | GO:0046503 | 0.0336136959344149 | glycerolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycerolipids, any lipid with a glycerol backbone. [GOC:ai]
22 | GO:0071703 | 0.0336136959344149 | detection of organic substance | biological_process | The series of events in which an organic substance stimulus is received by a cell and converted into a molecular signal. [GOC:mah]
22 | GO:0090436 | 0.0336136959344149 | leaf pavement cell development | biological_process | The process whose specific outcome is the progression of an leaf pavement cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a leaf pavement cell fate. [GOC:tb]
22 | GO:2000012 | 0.0336136959344149 | regulation of auxin polar transport | biological_process | Any process that modulates the frequency, rate or extent of auxin polar transport. [GOC:obol]
22 | GO:0006972 | 0.0358756366266774 | hyperosmotic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. [GOC:jl, PMID:12142009]
22 | GO:0046700 | 0.0358787769826265 | heterocycle catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). [GOC:ai]
22 | GO:0044270 | 0.0365614511245309 | cellular nitrogen compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of organic and inorganic nitrogenous compounds. [GOC:jl, ISBN:[PHONE]]
22 | GO:1901361 | 0.0372531820854474 | organic cyclic compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of organic cyclic compound. [GOC:TermGenie]
22 | GO:0009850 | 0.0379468922967575 | [NAME] process | biological_process | The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth. [GOC:lr]
22 | GO:0006195 | 0.0438269247560711 | purine nucleotide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009143 | 0.0438269247560711 | nucleoside triphosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009146 | 0.0438269247560711 | purine nucleoside triphosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009154 | 0.0438269247560711 | purine ribonucleotide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009203 | 0.0438269247560711 | ribonucleoside triphosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009207 | 0.0438269247560711 | purine ribonucleoside triphosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009261 | 0.0438269247560711 | ribonucleotide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0006888 | 0.0448121984684334 | ER to Golgi vesicle-mediated transport | biological_process | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb, ISBN:[PHONE]]
22 | GO:0006970 | 0.0448392665568235 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
22 | GO:0009166 | 0.0448639797370908 | nucleotide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nucleotides, any nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic-nucleotides (nucleoside cyclic phosphates). [GOC:go_curators]
22 | GO:1901292 | 0.0448639797370908 | nucleoside phosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a nucleoside phosphate. [GOC:TermGenie]
22 | GO:0006200 | 0.0448939130018693 | ATP catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:ai]
22 | GO:0006152 | 0.0459168265139064 | purine nucleoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:go_curators]
22 | GO:0009164 | 0.0459168265139064 | nucleoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:jl]
22 | GO:0042454 | 0.0459168265139064 | ribonucleoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. [CHEBI:18254, GOC:jl]
22 | GO:0046130 | 0.0459168265139064 | purine ribonucleoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. [GOC:ai]
22 | GO:0072523 | 0.0469855258762404 | purine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof. [CHEBI:26401, GOC:mah]
22 | GO:0009144 | 0.0480701360271245 | purine nucleoside triphosphate metabolic process | biological_process | The chemical reactions and pathways involving purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009199 | 0.0480701360271245 | ribonucleoside triphosphate metabolic process | biological_process | The chemical reactions and pathways involving a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009205 | 0.0480701360271245 | purine ribonucleoside triphosphate metabolic process | biological_process | The chemical reactions and pathways involving purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0009141 | 0.0491707125681752 | nucleoside triphosphate metabolic process | biological_process | The chemical reactions and pathways involving a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0044087 | 0.0497088697717086 | regulation of cellular component biogenesis | biological_process | Any process that modulates the frequency, rate or extent of cellular component biogenesis, a process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. [GOC:jl]
22 | GO:0009414 | 0.0498166145032278 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
22 | GO:0046034 | 0.0498166145032278 | ATP metabolic process | biological_process | The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators]
22 | GO:0006167 | 0.0499983645576329 | AMP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of AMP, adenosine monophosphate. [GOC:go_curators, ISBN:[PHONE]]
22 | GO:0006878 | 0.0499983645576329 | cellular copper ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of copper ions at the level of a cell. [GOC:ai, GOC:mah]
22 | GO:0010078 | 0.0499983645576329 | maintenance of root meristem identity | biological_process | The process in which an organism retains a population of root meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:dph, GOC:tb]
22 | GO:0030433 | 0.0499983645576329 | ER-associated protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation. This process acts on misfolded proteins as well as in the regulated degradation of correctly folded proteins. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858]
22 | GO:0046033 | 0.0499983645576329 | AMP metabolic process | biological_process | The chemical reactions and pathways involving AMP, adenosine monophosphate. [GOC:go_curators]
22 | GO:0048768 | 0.0499983645576329 | [NAME] cell tip growth | biological_process | Localized growth of a plant root hair tip by extension of the cell wall. [GOC:jid, GOC:ki, PMID:12468740]
22 | GO:0048830 | 0.0499983645576329 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
23 | GO:0006096 | 7.38419980645213e-05 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
23 | GO:0009853 | 0.000128632910519435 | photorespiration | biological_process | A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:[PHONE]]
23 | GO:0019932 | 0.000723383510364593 | second-messenger-mediated signaling | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via a second messenger; a small molecule or ion that can be quickly generated or released from intracellular stores, and can diffuse within the cell. Second-messenger signaling includes production or release of the second messenger, and effectors downstream of the second messenger that further transmit the signal within the cell. [GOC:signaling, [NAME], PMID:15221855, Wikipedia:Second_messenger_system]
23 | GO:0006094 | 0.000783383736039092 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
23 | GO:0030243 | 0.00123609717794002 | cellulose metabolic process | biological_process | The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:[PHONE]]
23 | GO:0046686 | 0.00231863732695722 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
23 | [NAME] | 0.00293779544129813 | anatomical structure morphogenesis | biological_process | The process in which anatomical structures are generated and organized. Morphogenesis pertains to the creation of form. [GOC:go_curators, ISBN:[PHONE]]
23 | GO:0040007 | 0.00349896255270424 | growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell. [GOC:bf, GOC:ma]
23 | GO:0015980 | 0.00430981188831062 | energy derivation by oxidation of organic compounds | biological_process | The chemical reactions and pathways by which a cell derives energy from organic compounds; results in the oxidation of the compounds from which energy is released. [GOC:mah]
23 | GO:0007030 | 0.00478856897315286 | Golgi organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. [GOC:dph, GOC:jl, GOC:mah]
23 | GO:0009095 | 0.00554977598539978 | aromatic amino acid family biosynthetic process, prephenate pathway | biological_process | The chemical reactions and pathways resulting in the formation of phenylalanine and tyrosine from other compounds, including chorismate, via the intermediate prephenate. [GOC:mah, ISBN:[PHONE]]
23 | GO:0010492 | 0.00554977598539978 | maintenance of shoot apical meristem identity | biological_process | The process in which an organism retains a population of shoot apical meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:dph, GOC:tb, PMID:17461786]
23 | GO:0006085 | 0.0093075163565542 | acetyl-CoA biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated. [GOC:go_curators]
23 | GO:0044272 | 0.0106496448222206 | sulfur compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:jl]
23 | GO:0044711 | 0.0106813766659406 | single-organism biosynthetic process | biological_process | A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. [GOC:jl]
23 | GO:0006566 | 0.011507758227554 | [NAME] process | biological_process | The chemical reactions and pathways involving threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
23 | GO:0006833 | 0.0131214365315093 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
23 | [NAME] | 0.0131214365315093 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
23 | GO:0009799 | 0.0141236862988268 | specification of symmetry | biological_process | The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. [GOC:go_curators]
23 | GO:0009855 | 0.0141236862988268 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
23 | GO:0003002 | 0.0144193625720388 | regionalization | biological_process | The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. [GOC:dph, GOC:isa_complete]
23 | GO:0048589 | 0.0144227413996499 | developmental growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. [GOC:go_curators]
23 | GO:0009943 | 0.0146979931389034 | adaxial/abaxial axis specification | biological_process | The establishment, maintenance and elaboration of the adaxial / abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
23 | GO:0009944 | 0.0146979931389034 | polarity specification of adaxial/abaxial axis | biological_process | The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
23 | GO:1901607 | 0.015001816840886 | alpha-amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alpha-amino acid. [GOC:TermGenie]
23 | GO:0006498 | 0.0159057906646093 | N-terminal protein lipidation | biological_process | The covalent attachment of a lipid group to the amino terminus of a protein. [GOC:jl]
23 | GO:0006499 | 0.0159057906646093 | N-terminal protein myristoylation | biological_process | The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. [GOC:mah]
23 | GO:0018377 | 0.0159057906646093 | protein myristoylation | biological_process | The covalent attachment of a myristoyl group to a protein. [GOC:ai]
23 | GO:0065001 | 0.0160240832254895 | specification of axis polarity | biological_process | The pattern specification process in which the polarity of a body or organ axis is established and maintained. [GOC:mah]
23 | GO:0000025 | 0.0167892548769566 | maltose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose). [GOC:jl, ISBN:[PHONE]]
23 | GO:0000821 | 0.0167892548769566 | regulation of arginine metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [[NAME], GOC:go_curators]
23 | GO:0006013 | 0.0167892548769566 | mannose metabolic process | biological_process | The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins. [ISBN:[PHONE]]
23 | GO:0006535 | 0.0167892548769566 | cysteine biosynthetic process from serine | biological_process | The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators]
23 | GO:0006591 | 0.0167892548769566 | ornithine metabolic process | biological_process | The chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. [GOC:jl, ISBN:[PHONE]]
23 | GO:0006954 | 0.0167892548769566 | inflammatory response | biological_process | The immediate defensive reaction (by vertebrate tissue) to infection or injury caused by chemical or physical agents. The process is characterized by local vasodilation, extravasation of plasma into intercellular spaces and accumulation of white blood cells and macrophages. [GO_REF:0000022, GOC:mtg_15nov05, ISBN:[PHONE]]
23 | GO:0009129 | 0.0167892548769566 | pyrimidine nucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
23 | GO:0009173 | 0.0167892548769566 | pyrimidine ribonucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
23 | GO:0010064 | 0.0167892548769566 | [NAME] morphogenesis | biological_process | The process in which the anatomical structures of embryonic shoot are generated and organized. [GOC:tb]
23 | GO:0010080 | 0.0167892548769566 | regulation of floral meristem growth | biological_process | Any process involved in maintaining the size and shape of a floral meristem. [GOC:tb]
23 | GO:0010451 | 0.0167892548769566 | floral meristem growth | biological_process | The increase in size or mass of a floral meristem, a population of undifferentiated cells in a plant that gives rise to a flower. [GOC:tb]
23 | GO:0018920 | 0.0167892548769566 | [NAME] process | biological_process | The chemical reactions and pathways involving glyphosate, a broad-spectrum herbicide also known by the trade name [NAME]. It is a member of a broad class of compounds known as phosphonic acids, which contain a direct carbon-to-phosphorus (C-P) bond. [UM-BBD_pathwayID:gly]
23 | GO:0019307 | 0.0167892548769566 | mannose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. [GOC:ai]
23 | GO:0042351 | 0.0167892548769566 | 'de novo' GDP-L-fucose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of GDP-L-fucose from GDP-D-mannose via GDP-4-dehydro-6-deoxy-D-mannose, requiring the functions of GDP-mannose 4,6-dehydratase (EC:4.2.1.47) and GDP-L-fucose synthase (EC:1.1.1.271). [EC:1.1.1.271, PMID:11030750]
23 | GO:0042450 | 0.0167892548769566 | arginine biosynthetic process via ornithine | biological_process | The chemical reactions and pathways resulting in the formation of arginine (2-amino-5-guanidinopentanoic acid) via the intermediate compound ornithine. [GOC:jl]
23 | GO:0080088 | 0.0167892548769566 | spermidine hydroxycinnamate conjugate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates. [PMID:19077165]
23 | [NAME] | 0.0167892548769566 | regulation of ornithine metabolic process | biological_process | Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways involving ornithine, an amino acid only rarely found in proteins, but which is important in living organisms as an intermediate in the reactions of the urea cycle and in arginine biosynthesis. [GOC:dph, GOC:jp, GOC:tb]
23 | GO:1900079 | 0.0167892548769566 | regulation of arginine biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of arginine biosynthetic process. [GOC:dgf, GOC:TermGenie]
23 | GO:2000013 | 0.0167892548769566 | regulation of arginine biosynthetic process via ornithine | biological_process | Any process that modulates the frequency, rate or extent of arginine biosynthetic process via ornithine. [GOC:obol]
23 | GO:0009932 | 0.0172687406066709 | cell tip growth | biological_process | Growth that occurs specifically at the tip of a cell. [GOC:jid]
23 | GO:0006497 | 0.0178235233233349 | protein lipidation | biological_process | The covalent attachment of lipid groups to an amino acid in a protein. [GOC:jl]
23 | GO:0031365 | 0.0178235233233349 | N-terminal protein amino acid modification | biological_process | The alteration of the N-terminal amino acid residue in a protein. [GOC:mah]
23 | GO:0042157 | 0.0178235233233349 | [NAME] process | biological_process | The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. [ISBN:[PHONE]]
23 | GO:0042158 | 0.0178235233233349 | lipoprotein biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. [ISBN:[PHONE]]
23 | GO:0009955 | 0.0188721765425695 | adaxial/abaxial pattern specification | biological_process | The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:isa_complete, GOC:tb]
23 | GO:0046939 | 0.0193041681194124 | nucleotide phosphorylation | biological_process | The process of introducing one or more phosphate groups into a nucleotide to produce a phosphorylated nucleoside. [GOC:ai]
23 | GO:0080129 | 0.0198797011093401 | proteasome core complex assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. [PMID:12401807, PMID:17971041]
23 | GO:0008652 | 0.0219000384259874 | cellular amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:[PHONE]]
23 | GO:0009798 | 0.0219828673362189 | axis specification | biological_process | The establishment, maintenance and elaboration of a pattern along a line or around a point. [GOC:dph, GOC:go_curators, GOC:isa_complete]
23 | GO:0006790 | 0.0229441122325792 | sulfur compound metabolic process | biological_process | The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:ai]
23 | GO:0009790 | 0.0229441122325792 | embryo development | biological_process | The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu]
23 | GO:0000096 | 0.0230679028546849 | sulfur amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids containing sulfur, comprising cysteine, homocysteine, methionine and selenocysteine. [GOC:ai]
23 | GO:0006816 | 0.0232289465065933 | calcium ion transport | biological_process | The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
23 | GO:0045333 | 0.0236369456316735 | cellular respiration | biological_process | The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration). [ISBN:[PHONE], ISBN:[PHONE]]
23 | GO:0070838 | 0.0240377508476291 | divalent metal ion transport | biological_process | The directed movement of divalent metal cations, any metal ion with a +2 electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
23 | GO:0009066 | 0.024417100406677 | aspartate family amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. [GOC:ai]
23 | GO:0016144 | 0.024417100406677 | S-glycoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
23 | GO:0019758 | 0.024417100406677 | glycosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
23 | GO:0019761 | 0.024417100406677 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
23 | GO:0007389 | 0.0247231474420149 | pattern specification process | biological_process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
23 | GO:0051603 | 0.0272774002042567 | proteolysis involved in cellular protein catabolic process | biological_process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb]
23 | GO:0072511 | 0.0279854687006684 | divalent inorganic cation transport | biological_process | The directed movement of inorganic cations with a valency of two into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage. [GOC:mah]
23 | GO:0019722 | 0.0287456879258395 | calcium-mediated signaling | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions. [GOC:signaling]
23 | GO:0010051 | 0.0289938235807388 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
23 | GO:0006722 | 0.0322271110021872 | triterpenoid metabolic process | biological_process | The chemical reactions and pathways involving triterpenoid compounds, terpenoids with six isoprene units. [ISBN:[PHONE]]
23 | GO:0016104 | 0.0322271110021872 | triterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units. [GOC:go_curators]
23 | GO:0019742 | 0.0322271110021872 | pentacyclic triterpenoid metabolic process | biological_process | The chemical reactions and pathways involving pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings. [ISBN:[PHONE]]
23 | GO:0019745 | 0.0322271110021872 | pentacyclic triterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings. [ISBN:[PHONE]]
23 | GO:0043543 | 0.0323141276470593 | protein acylation | biological_process | The addition of an acyl group, any group or radical of the form RCO- where R is an organic group, to a protein amino acid. [GOC:jl]
23 | GO:0000820 | 0.0332992705874705 | regulation of glutamine family amino acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. [GOC:go_curators]
23 | GO:0006083 | 0.0332992705874705 | acetate metabolic process | biological_process | The chemical reactions and pathways involving acetate, the anion of acetic acid. [GOC:go_curators]
23 | GO:0006168 | 0.0332992705874705 | adenine salvage | biological_process | Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis. [GOC:jl]
23 | GO:0009088 | 0.0332992705874705 | threonine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
23 | GO:0009113 | 0.0332992705874705 | purine nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [CHEBI:26386, GOC:go_curators, ISBN:[PHONE]]
23 | GO:0009423 | 0.0332992705874705 | chorismate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds. [GOC:sm, ISBN:[PHONE]]
23 | GO:0043096 | 0.0332992705874705 | purine nucleobase salvage | biological_process | Any process that generates purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from derivatives of them without de novo synthesis. [CHEBI:26386, GOC:jl]
23 | GO:0046083 | 0.0332992705874705 | adenine metabolic process | biological_process | The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. [GOC:go_curators]
23 | GO:0046084 | 0.0332992705874705 | adenine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. [GOC:go_curators]
23 | GO:2000282 | 0.0332992705874705 | regulation of cellular amino acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process. [GOC:obol]
23 | GO:0009826 | 0.0336075151021556 | unidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis, resulting in the morphogenesis of the cell. [ISBN:[PHONE]]
23 | GO:0009086 | 0.034939428426854 | methionine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
23 | GO:0044283 | 0.0361342704646932 | small molecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:pde, GOC:vw]
23 | GO:0044767 | 0.0370579859134837 | single-organism developmental process | biological_process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. [GOC:jl]
23 | GO:0044550 | 0.0370634309465474 | secondary metabolite biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl]
23 | GO:0048646 | 0.0372113494271145 | anatomical structure formation involved in morphogenesis | biological_process | The developmental process pertaining to the initial formation of an anatomical structure from unspecified parts. This process begins with the specific processes that contribute to the appearance of the discrete structure and ends when the structural rudiment is recognizable. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. [GOC:dph, GOC:jid, GOC:tb]
23 | GO:0016143 | 0.0383211077599186 | S-glycoside metabolic process | biological_process | The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
23 | GO:0019757 | 0.0383211077599186 | glycosinolate metabolic process | biological_process | The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
23 | GO:0019760 | 0.0383211077599186 | glucosinolate metabolic process | biological_process | The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. [CHEBI:24279, GOC:curators]
23 | GO:0000097 | 0.0387402346909264 | sulfur amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine. [GOC:ai]
23 | GO:0044257 | 0.0400252804936241 | cellular protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:jl]
23 | GO:0016049 | 0.0405468236150796 | cell growth | biological_process | The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. [GOC:ai]
23 | GO:0010015 | 0.0409263608567664 | root morphogenesis | biological_process | The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support. [GOC:sm, ISBN:[PHONE]]
23 | GO:0032989 | 0.0414219387295071 | cellular component morphogenesis | biological_process | The process in which cellular structures, including whole cells or cell parts, are generated and organized. [GOC:dph, GOC:mah, GOC:tb]
23 | GO:0006555 | 0.0414661014848127 | [NAME] process | biological_process | The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
23 | GO:0006970 | 0.0423026577772311 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
23 | GO:0030163 | 0.0471253014495819 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah]
23 | GO:0043248 | 0.0484563604307807 | proteasome assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active proteasome complex. [GOC:go_curators, PMID:10872471]
23 | GO:0051788 | 0.0484563604307807 | response to misfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus. [GOC:go_curators]
23 | GO:0009057 | 0.0492201141096814 | macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [CHEBI:33694, GOC:mah]
23 | GO:0005977 | 0.0495346475213295 | glycogen metabolic process | biological_process | The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages. [ISBN:[PHONE]]
23 | GO:0006112 | 0.0495346475213295 | energy reserve metabolic process | biological_process | The chemical reactions and pathways by which a cell derives energy from stored compounds such as fats or glycogen. [GOC:mah]
23 | GO:0006526 | 0.0495346475213295 | arginine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [CHEBI:29016, ISBN:[PHONE]]
23 | GO:0006571 | 0.0495346475213295 | tyrosine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. [GOC:sm]
23 | GO:0010215 | 0.0495346475213295 | cellulose microfibril organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730]
23 | GO:0042304 | 0.0495346475213295 | regulation of fatty acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. [GOC:go_curators, GOC:jl]
23 | GO:0042350 | 0.0495346475213295 | GDP-L-fucose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate. [GOC:jl]
23 | GO:0043446 | 0.0495346475213295 | cellular alkane metabolic process | biological_process | The chemical reactions and pathways involving an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2, as carried out by individual cells. [CHEBI:18310, GOC:jl, Wikipedia:Alkane]
23 | GO:0043447 | 0.0495346475213295 | alkane biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alkane, any acyclic branched or unbranched hydrocarbon having the general formula CnH2n+2. [CHEBI:18310, GOC:jl, Wikipedia:Alkane]
23 | GO:0045793 | 0.0495346475213295 | positive regulation of cell size | biological_process | Any process that increases cell size. [GOC:go_curators]
23 | GO:0046112 | 0.0495346475213295 | nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid. [GOC:ai]
23 | GO:0046352 | 0.0495346475213295 | disaccharide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of disaccharides, sugars composed of two monosaccharide units. [GOC:ai]
23 | GO:0046368 | 0.0495346475213295 | GDP-L-fucose metabolic process | biological_process | The chemical reactions and pathways involving GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate. [GOC:ai]
23 | [NAME] | 0.0495346475213295 | chorismate metabolic process | biological_process | The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid. [ISBN:[PHONE]]
23 | GO:0048768 | 0.0495346475213295 | [NAME] cell tip growth | biological_process | Localized growth of a plant root hair tip by extension of the cell wall. [GOC:jid, GOC:ki, PMID:12468740]
23 | GO:0060771 | 0.0495346475213295 | phyllotactic patterning | biological_process | The radial pattern formation process that results in the formation of leaf or flower primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
23 | GO:0060772 | 0.0495346475213295 | leaf phyllotactic patterning | biological_process | The radial pattern formation process that results in the formation of leaf primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
23 | GO:0060774 | 0.0495346475213295 | auxin mediated signaling pathway involved in phyllotactic patterning | biological_process | The series of molecular signals generated in response to detection of auxin that contributes to the radial pattern formation process resulting in the formation of leaf or flower primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
23 | GO:0070726 | 0.0495346475213295 | cell wall assembly | biological_process | The aggregation, arrangement and bonding together of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells. [GOC:mah]
23 | [NAME] | 0.0495346475213295 | plant-type cell wall assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a cellulose- and pectin-containing cell wall. [GOC:mah]
24 | GO:0046686 | 6.41537646530552e-05 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
24 | GO:0006096 | 0.000264116551408023 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
24 | GO:0006972 | 0.00106789526186032 | hyperosmotic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. [GOC:jl, PMID:12142009]
24 | GO:0009266 | 0.00112739414453228 | response to temperature stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. [GOC:hb]
24 | GO:0006094 | 0.00118591189518407 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
24 | GO:0007030 | 0.00149425704639598 | Golgi organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. [GOC:dph, GOC:jl, GOC:mah]
24 | GO:0016126 | 0.00161212436542886 | sterol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators]
24 | GO:0051775 | 0.0024516384252582 | response to redox state | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. [GOC:mah, PMID:15131240, PMID:16987039]
24 | GO:0006499 | 0.00628290947185101 | N-terminal protein myristoylation | biological_process | The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. [GOC:mah]
24 | GO:0019321 | 0.00685825875180239 | pentose metabolic process | biological_process | The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. [ISBN:[PHONE]]
24 | GO:0048645 | 0.0091203810253698 | organ formation | biological_process | The process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. Organs are a natural part or structure in an animal or a plant, capable of performing some special action (termed its function), which is essential to the life or well-being of the whole. The heart and lungs are organs of animals, and the petal and leaf are organs of plants. In animals the organs are generally made up of several tissues, one of which usually predominates, and determines the principal function of the organ. [GOC:dph, GOC:jid]
24 | GO:0006833 | 0.0105155538964214 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
24 | [NAME] | 0.0105155538964214 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
24 | GO:0009651 | 0.0108905708358161 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
24 | GO:0006333 | 0.0115937619894994 | chromatin assembly or disassembly | biological_process | The formation or destruction of chromatin structures. [GOC:mah]
24 | GO:0009066 | 0.0116695586876292 | aspartate family amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. [GOC:ai]
24 | GO:0006084 | 0.0120183428071322 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
24 | GO:0009740 | 0.0129571598197599 | gibberellic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm]
24 | GO:0010476 | 0.0129571598197599 | [NAME] mediated signaling pathway | biological_process | The series of molecular signals generated as a consequence of gibberellin stimulus. [PMID:17521411]
24 | GO:0006637 | 0.0130784937536526 | acyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [ISBN:[PHONE]]
24 | GO:0035383 | 0.0130784937536526 | [NAME] process | biological_process | The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
24 | GO:0071370 | 0.0144188013602521 | cellular response to gibberellin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:mah]
24 | GO:0010380 | 0.0158954348160552 | regulation of chlorophyll biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [PMID:17291312]
24 | GO:0007010 | 0.0189135204770359 | cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah]
24 | GO:0010014 | 0.0197035252711693 | meristem initiation | biological_process | Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm]
24 | GO:0006567 | 0.0207941022306371 | threonine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
24 | GO:0090056 | 0.0207941022306371 | regulation of chlorophyll metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chlorophyll. [GOC:dph, GOC:tb]
24 | GO:1901463 | 0.0207941022306371 | regulation of tetrapyrrole biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process. [GOC:mengo_curators, GOC:TermGenie]
24 | GO:0009409 | 0.0220784639252248 | response to cold | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr]
24 | GO:0009799 | 0.02229866494247 | specification of symmetry | biological_process | The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. [GOC:go_curators]
24 | GO:0009855 | 0.02229866494247 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
24 | GO:0010208 | 0.0262321362097962 | [NAME] assembly | biological_process | The formation of reticulate pollen wall pattern consisting of two layers, exine and intine. [PMID:11743117]
24 | GO:0010584 | 0.0262321362097962 | [NAME] formation | biological_process | The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine. [GOC:dhl]
24 | GO:0010927 | 0.0262321362097962 | cellular component assembly involved in morphogenesis | biological_process | The cellular component assembly that is part of the initial shaping of the component during its developmental progression. [GOC:dph, GOC:tb]
24 | GO:1901401 | 0.0262321362097962 | regulation of tetrapyrrole metabolic process | biological_process | Any process that modulates the frequency, rate or extent of tetrapyrrole metabolic process. [GOC:mengo_curators, GOC:TermGenie]
24 | GO:0006420 | 0.0289414774544283 | arginyl-tRNA aminoacylation | biological_process | The process of coupling arginine to arginyl-tRNA, catalyzed by arginyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
24 | GO:0007263 | 0.0289414774544283 | nitric oxide mediated signal transduction | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via nitric oxide (NO). Includes synthesis of nitric oxide, receptors/sensors for nitric oxide (such as soluble guanylyl cyclase/sGC) and downstream effectors that further transmit the signal within the cell. Nitric oxide transmits its downstream effects through either cyclic GMP (cGMP)-dependent or independent mechanisms. [GOC:jl, PMID:21549190]
24 | GO:0010076 | 0.0289414774544283 | maintenance of floral meristem identity | biological_process | The process in which an organism retains a population of floral meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:dph, GOC:tb]
24 | GO:0010248 | 0.0289414774544283 | establishment or maintenance of transmembrane electrochemical gradient | biological_process | The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:sm]
24 | GO:0019419 | 0.0289414774544283 | sulfate reduction | biological_process | The chemical reactions and pathways resulting in the reduction of sulfate to another sulfur-containing ion or compound such as hydrogen sulfide, adenosine-phosphosulfate (APS) or thiosulfate. [MetaCyc:DISSULFRED-PWY, MetaCyc:P224-PWY, MetaCyc:SO4ASSIM-PWY, MetaCyc:SULFMETII-PWY]
24 | GO:0031440 | 0.0289414774544283 | regulation of mRNA 3'-end processing | biological_process | Any process that modulates the frequency, rate or extent of mRNA 3'-end processing, any process involved in forming the mature 3' end of an mRNA molecule. [GOC:mah]
24 | GO:0033587 | 0.0289414774544283 | shikimate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. [CHEBI:36208, GOC:mah]
24 | GO:0040030 | 0.0289414774544283 | regulation of molecular function, epigenetic | biological_process | Any heritable epigenetic process that modulates the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya. [GOC:dph, GOC:ems, GOC:tb, PMID:10611975, PMID:11050225, PMID:11447696, PMID:11685242, PMID:11782551]
24 | GO:0042178 | 0.0289414774544283 | xenobiotic catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:jl]
24 | GO:0045857 | 0.0289414774544283 | negative regulation of molecular function, epigenetic | biological_process | Any heritable epigenetic process that stops, prevents, or reduces the frequency, rate or extent of protein function by self-perpetuating conformational conversions of normal proteins in healthy cells. This is distinct from, though mechanistically analogous to, disease states associated with prion propagation and amyloidogenesis. A single protein, if it carries a glutamine/asparagine-rich ('prion') domain, can sometimes stably exist in at least two distinct physical states, each associated with a different phenotype; propagation of one of these traits is achieved by a self-perpetuating change in the protein from one form to the other, mediated by conformational changes in the glutamine/asparagine-rich domain. Prion domains are both modular and transferable to other proteins, on which they can confer a heritable epigenetic alteration of function; existing bioinformatics data indicate that they are rare in non-eukarya, but common in eukarya. [GOC:dph, GOC:go_curators, GOC:tb]
24 | [NAME] | 0.0289414774544283 | establishment of petal orientation | biological_process | The process that determines the orientation of petals with reference to the central axis. [GOC:tb, PMID:10572040]
24 | GO:0048559 | 0.0289414774544283 | establishment of floral organ orientation | biological_process | The process that determines the orientation of the floral organs with reference to the central axis of the flower. [GOC:jid]
24 | GO:0048560 | 0.0289414774544283 | establishment of anatomical structure orientation | biological_process | The process that determines the orientation of an anatomical structure with reference to an axis. [GOC:jid]
24 | GO:0048561 | 0.0289414774544283 | establishment of organ orientation | biological_process | The process that determines the orientation of an organ or tissue with reference to an axis. [GOC:jid]
24 | GO:0060211 | 0.0289414774544283 | regulation of nuclear-transcribed mRNA poly(A) tail shortening | biological_process | Any process that modulates the frequency, rate or extent of poly(A) tail shortening of a nuclear-transcribed mRNA. [NAME]) tail shortening is the decrease in length of the poly(A) tail of an mRNA from full length to an oligo(A) length. [GOC:dph, GOC:tb]
24 | GO:0060964 | 0.0289414774544283 | regulation of gene silencing by miRNA | biological_process | Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [GOC:dph, GOC:tb]
24 | GO:0060966 | 0.0289414774544283 | regulation of gene silencing by RNA | biological_process | Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:tb]
24 | [NAME] | 0.0289414774544283 | regulation of mRNA catabolic process | biological_process | Any process that modulates the rate, frequency, or extent of a mRNA catabolic process, the chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. [GOC:ascb_2009, GOC:dph, GOC:tb]
24 | GO:0080088 | 0.0289414774544283 | spermidine hydroxycinnamate conjugate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates. [PMID:19077165]
24 | GO:0090428 | 0.0289414774544283 | perianth development | biological_process | The process whose specific outcome is the progression of the perianth over time, from its formation to the mature structure. The perianth is a collective phyllome structure composed of two or more petals, sepals, or tepals. [GOC:tb, PO:0009058]
24 | GO:1900151 | 0.0289414774544283 | regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | biological_process | Any process that modulates the frequency, rate or extent of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay. [GOC:mcc, GOC:TermGenie]
24 | GO:0048449 | 0.0308707405829757 | floral organ formation | biological_process | The process that gives rise to floral organs. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid, GOC:PO_curators, PO:0025395]
24 | GO:0006566 | 0.0321745706984972 | [NAME] process | biological_process | The chemical reactions and pathways involving threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
24 | GO:0042732 | 0.0321745706984972 | D-xylose metabolic process | biological_process | The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide. [ISBN:[PHONE]]
24 | GO:0051193 | 0.0321745706984972 | regulation of cofactor metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a cofactor. [GOC:ai]
24 | [NAME] | 0.033363586200749 | cellular amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids, carboxylic acids containing one or more amino groups, as carried out by individual cells. [CHEBI:33709, GOC:curators, ISBN:[PHONE]]
24 | GO:0033554 | 0.036194215078715 | cellular response to stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
24 | GO:0009736 | 0.0419059952231032 | cytokinin mediated signaling pathway | biological_process | A series of molecular signals induced by the detection of cytokinin. [GOC:sm]
24 | GO:0071368 | 0.0419059952231032 | cellular response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:mah]
24 | GO:0034976 | 0.0430238546096568 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
24 | [NAME] | 0.0452070108352608 | seed development | biological_process | The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010]
24 | GO:0009068 | 0.0454404814998456 | aspartate family amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. [GOC:ai]
24 | GO:0048444 | 0.0455417751930766 | floral organ morphogenesis | biological_process | The process in which the anatomical structures of the floral organ are generated and organized. [GOC:go_curators, GOC:PO_curators, PO:0025395]
24 | [NAME] | 0.0455417751930766 | post-embryonic organ morphogenesis | biological_process | Morphogenesis, during the post-embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis pertains to process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. [GOC:jid]
24 | GO:0010264 | 0.0459664808708316 | myo-inositol hexakisphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds. [[NAME], PMID:16107538]
24 | [NAME] | 0.0459664808708316 | myo-inositol hexakisphosphate metabolic process | biological_process | The chemical reactions and pathways involving phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds. [[NAME], PMID:16107538]
24 | GO:0009853 | 0.0462585100819063 | photorespiration | biological_process | A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:[PHONE]]
25 | GO:0007020 | 4.91533292810985e-05 | microtubule nucleation | biological_process | The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. [NAME] nucleation usually occurs from a specific site within a cell. [ISBN:[PHONE]]
25 | GO:0030244 | 0.000147718679520722 | cellulose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:[PHONE]]
25 | GO:0071555 | 0.000302539768559886 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
25 | GO:0048765 | 0.000359644073098038 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
25 | GO:0010205 | 0.000441303923281978 | photoinhibition | biological_process | The mechanism by which high light intensity inhibits photosynthesis through inactivation of the D1 protein of photosystem II. [GOC:mtg_electron_transport, PMID:12068126]
25 | GO:0007155 | 0.000577042943394311 | cell adhesion | biological_process | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. [GOC:hb, GOC:pf]
25 | [NAME] | 0.000671510259083996 | [NAME] nucleation | biological_process | The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament. [ISBN:[PHONE]]
25 | GO:0009832 | 0.00115952361492464 | plant-type cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellulose and pectin-containing cell wall. An example of this is found in Arabidopsis thaliana. [GOC:go_curators, GOC:lr, GOC:mtg_sensu]
25 | GO:0010075 | 0.00141105181414951 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
25 | GO:0016049 | 0.00172002522985098 | cell growth | biological_process | The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. [GOC:ai]
25 | GO:1901135 | 0.00240942010458188 | carbohydrate derivative metabolic process | biological_process | The chemical reactions and pathways involving carbohydrate derivative. [GOC:TermGenie]
25 | GO:0010090 | 0.00241794968870397 | trichome morphogenesis | biological_process | The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
25 | [NAME] | 0.00380773386126671 | circadian regulation of calcium ion oscillation | biological_process | Any process that modulates the concentration of cytosolic free calcium ion [Ca2+]cyt with a regularity of approximately 24 hours. [PMID:17982000]
25 | GO:0044723 | 0.00381999208864837 | single-organism carbohydrate metabolic process | biological_process | The chemical reactions and pathways involving carbohydrates, occurring within a single organism. [GOC:jl]
25 | GO:0006897 | 0.00462850495363776 | endocytosis | biological_process | A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. [GOC:mah, ISBN:[PHONE], ISBN:[PHONE]]
25 | GO:0010014 | 0.00495703919411932 | meristem initiation | biological_process | Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm]
25 | GO:0009880 | 0.00509711250433702 | [NAME] specification | biological_process | The process that results in the patterns of cell differentiation that will arise in an embryo. [GOC:go_curators, ISBN:[PHONE]]
25 | GO:0051693 | 0.00743410185716922 | actin filament capping | biological_process | The binding of a protein or protein complex to the end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. [ISBN:071673706X]
25 | GO:0044036 | 0.00756505123004757 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
25 | GO:0005976 | 0.00795478166540773 | polysaccharide metabolic process | biological_process | The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, ISBN:[PHONE]]
25 | GO:0010074 | 0.00855870160019878 | maintenance of meristem identity | biological_process | The process in which an organism retains a population of meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:tb]
25 | GO:0009798 | 0.00890296531627781 | axis specification | biological_process | The establishment, maintenance and elaboration of a pattern along a line or around a point. [GOC:dph, GOC:go_curators, GOC:isa_complete]
25 | GO:0003002 | 0.012072044900111 | regionalization | biological_process | The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. [GOC:dph, GOC:isa_complete]
25 | GO:0006694 | 0.012072044900111 | steroid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus; includes de novo formation and steroid interconversion by modification. [GOC:go_curators]
25 | [NAME] | 0.0120959671464614 | [NAME] | biological_process | The establishment, maintenance and elaboration of a pattern along a line or a point in an embryo. [GOC:dph, GOC:go_curators, GOC:sdb_2009, GOC:tb]
25 | GO:0009942 | 0.0120959671464614 | longitudinal axis specification | biological_process | The establishment, maintenance and elaboration of the longitudinal axis. In plants, this is the axis that runs from the shoot to the root. [GOC:tb]
25 | GO:0010148 | 0.0120959671464614 | transpiration | biological_process | Release of water by the plant into the air as water vapor mainly through leaves. [GOC:sm, ISBN:[PHONE]]
25 | GO:0016051 | 0.0126663786106516 | carbohydrate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. [ISBN:[PHONE]]
25 | GO:0051301 | 0.0130541550097848 | cell division | biological_process | The process resulting in the physical partitioning and separation of a cell into daughter cells. [GOC:go_curators]
25 | GO:0032880 | 0.0132797925617657 | regulation of protein localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location. [GOC:dph, GOC:mah, GOC:tb]
25 | GO:0009799 | 0.0149722319719178 | specification of symmetry | biological_process | The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. [GOC:go_curators]
25 | GO:0009855 | 0.0149722319719178 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
25 | GO:0010817 | 0.0152608018594911 | regulation of hormone levels | biological_process | Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. [GOC:BHF, GOC:dph, GOC:tb]
25 | GO:0008202 | 0.0165940563485655 | steroid metabolic process | biological_process | The chemical reactions and pathways involving steroids, compounds with a 1,2,cyclopentanoperhydrophenanthrene nucleus. [ISBN:[PHONE]]
25 | GO:0016126 | 0.0206461626223608 | sterol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [GOC:go_curators]
25 | GO:0032879 | 0.0216861681415525 | regulation of localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location. [GOC:mah]
25 | GO:0016125 | 0.0220094395313804 | [NAME] process | biological_process | The chemical reactions and pathways involving sterols, steroids with one or more hydroxyl groups and a hydrocarbon side-chain in the molecule. [ISBN:[PHONE]]
25 | GO:0046165 | 0.0227378045792861 | alcohol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, GOC:ai]
25 | [NAME] | 0.0235944485349516 | carbohydrate derivative biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carbohydrate derivative. [GOC:TermGenie]
25 | GO:0009161 | 0.0242148342200205 | ribonucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
25 | GO:0010741 | 0.0242148342200205 | negative regulation of intracellular protein kinase cascade | biological_process | Any process that decreases the rate, frequency or extent of a series of reactions, mediated by protein kinases, which occurs as a result of a single trigger reaction or compound. [GOC:dph, GOC:tb]
25 | GO:0019852 | 0.0242148342200205 | L-ascorbic acid metabolic process | biological_process | The chemical reactions and pathways involving L-ascorbic acid, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate; L-ascorbic acid is vitamin C and has co-factor and anti-oxidant activities in many species. [CHEBI:38290, GOC:jl, ISBN:[PHONE]]
25 | GO:0019853 | 0.0242148342200205 | L-ascorbic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of L-ascorbic acid; L-ascorbic acid ionizes to give L-ascorbate, (2R)-2-[(1S)-1,2-dihydroxyethyl]-4-hydroxy-5-oxo-2,5-dihydrofuran-3-olate, which is required as a cofactor in the oxidation of prolyl residues to hydroxyprolyl, and other reactions. [CHEBI:38290, GOC:ma, ISBN:[PHONE]]
25 | GO:0043407 | 0.0242148342200205 | negative regulation of MAP kinase activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of MAP kinase activity. [GOC:dph, GOC:go_curators]
25 | GO:0043409 | 0.0242148342200205 | negative regulation of MAPK cascade | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by the MAPKKK cascade. [GOC:go_curators]
25 | GO:0006066 | 0.0252407005221096 | alcohol metabolic process | biological_process | The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, ISBN:[PHONE]]
25 | GO:0048767 | 0.0264713403501591 | [NAME] elongation | biological_process | The process in which the root hair grows longer. [GOC:jid, PMID:12468740]
25 | GO:0000271 | 0.0267440113970612 | polysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
25 | GO:0016192 | 0.0275800308233424 | vesicle-mediated transport | biological_process | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000]
25 | GO:0046364 | 0.0276199642966808 | monosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
25 | GO:0006833 | 0.0315146496455131 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
25 | [NAME] | 0.0315146496455131 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
25 | GO:0009638 | 0.0315267233011193 | phototropism | biological_process | The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. [GOC:jl, GOC:mtg_far_red, PMID:16870491]
25 | GO:0033124 | 0.0315267233011193 | regulation of GTP catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. [GOC:mah]
25 | GO:0043087 | 0.0315267233011193 | regulation of GTPase activity | biological_process | Any process that modulates the rate of GTP hydrolysis by a GTPase. [GOC:jl]
25 | GO:0043547 | 0.0315267233011193 | positive regulation of GTPase activity | biological_process | Any process that activates or increases the activity of a GTPase. [GOC:jl]
25 | GO:0044038 | 0.0359411477951353 | cell wall macromolecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a macromolecule destined to form part of a cell wall. [GOC:go_curators]
25 | GO:0070589 | 0.0359411477951353 | cellular component macromolecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a macromolecule that is destined to form part of a specific cellular component. [GOC:mah]
25 | GO:0070592 | 0.0359411477951353 | cell wall polysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polysaccharide destined to form part of a cell wall. [GOC:mah]
25 | GO:0001578 | 0.0361368724016994 | microtubule bundle formation | biological_process | A process that results in a parallel arrangement of microtubules. [GOC:dph]
25 | GO:0002119 | 0.0361368724016994 | nematode larval development | biological_process | The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. [GOC:ems, GOC:kmv]
25 | GO:0002164 | 0.0361368724016994 | larval development | biological_process | The process whose specific outcome is the progression of the larva over time, from its formation to the mature structure. The larva is the early, immature form of an that at birth or hatching is fundamentally unlike its parent and must metamorphose before assuming the adult characters. [GOC:jid, ISBN:[PHONE]]
25 | GO:0006029 | 0.0361368724016994 | proteoglycan metabolic process | biological_process | The chemical reactions and pathways involving proteoglycans, any glycoprotein in which the carbohydrate units are glycosaminoglycans. [GOC:mah, ISBN:[PHONE]]
25 | GO:0006207 | 0.0361368724016994 | 'de novo' pyrimidine nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. [GOC:mah, ISBN:[PHONE]]
25 | GO:0006465 | 0.0361368724016994 | signal peptide processing | biological_process | The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. [GOC:mah, ISBN:[PHONE]]
25 | GO:0006493 | 0.0361368724016994 | protein O-linked glycosylation | biological_process | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the hydroxyl group of peptidyl-serine, peptidyl-threonine, peptidyl-hydroxylysine, or peptidyl-hydroxyproline, or via the phenol group of peptidyl-tyrosine, forming an O-glycan. [GOC:pr, ISBN:[PHONE], RESID:AA0153, RESID:AA0154, RESID:AA0155, RESID:[NAME], RESID:AA0212]
25 | GO:0006903 | 0.0361368724016994 | vesicle targeting | biological_process | The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo. [GOC:mah, PMID:17335816]
25 | GO:0006907 | 0.0361368724016994 | pinocytosis | biological_process | An endocytosis process that results in the uptake of liquid material by cells from their external environment; literally 'cell drinking'. Liquid is enclosed in vesicles, called pinosomes, formed by invagination of the plasma membrane. [ISBN:[PHONE]]
25 | GO:0007143 | 0.0361368724016994 | female meiosis | biological_process | A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle in the female germline. [GOC:dph, GOC:ems, GOC:mah]
25 | GO:0009129 | 0.0361368724016994 | pyrimidine nucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving pyrimidine nucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose or deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
25 | GO:0009173 | 0.0361368724016994 | pyrimidine ribonucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving pyrimidine ribonucleoside monophosphate, a compound consisting of a pyrimidine base linked to a ribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
25 | GO:0009848 | 0.0361368724016994 | indoleacetic acid biosynthetic process via tryptophan | biological_process | The chemical reactions and pathways resulting in the formation of indole-3-acetic acid that occurs through metabolism of L-tryptophan. [GOC:lm, GOC:lr, PMID:10375566]
25 | GO:0010116 | 0.0361368724016994 | positive regulation of abscisic acid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid. [GOC:sm]
25 | GO:0010202 | 0.0361368724016994 | response to low fluence red light stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Low fluence red light is defined in this case as short pulses of red light followed by darkness, providing a light level of 0.001-0.1 mmol/m2/sec. [GOC:mtg_far_red, GOC:sm]
25 | [NAME] | 0.0361368724016994 | negative regulation of ethylene biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of an ethylene biosynthetic process. [GOC:tair_curators]
25 | GO:0010371 | 0.0361368724016994 | regulation of gibberellin biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins. [GOC:tair_curators]
25 | GO:0010373 | 0.0361368724016994 | negative regulation of gibberellin biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of gibberellins. [GOC:tair_curators]
25 | GO:0010384 | 0.0361368724016994 | cell wall proteoglycan metabolic process | biological_process | The chemical reactions and pathways involving cell wall peptidoglycan, a group of glycoproteins that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates. [GOC:tair_curators]
25 | GO:0010404 | 0.0361368724016994 | cell wall hydroxyproline-rich glycoprotein metabolic process | biological_process | The chemical reactions and pathways involving a cell wall hydroxyproline-rich glycoprotein that consist of a core-protein backbone O-glycosylated by one or more complex carbohydrates. [GOC:tair_curators]
25 | GO:0010405 | 0.0361368724016994 | arabinogalactan protein metabolic process | biological_process | The chemical reactions and pathways involving a cell wall arabinogalactan II glycoprotein, which is composed of a group of core protein of highly varying length and domain complexity. These are O-glycosylated at one or more hydroxyproline residues by arabinogalactan (AG) type II groups, which consist of (1->3)-beta-galactan and (1->6)-beta-linked galactan chains connected to each other by (1->3,1->6)-linked branch points, [NAME] and [NAME] positions substituted with terminal arabinosyl residues. Also, rhamnose, fucose, glucuronic and galacturonic acid can be present in the glycan structures. [GOC:tair_curators]
25 | GO:0010483 | 0.0361368724016994 | [NAME] | biological_process | Interaction between the pollen tube, part of the male gametophyte, and the ovule, part of the female gametophyte, that results in the arrest of pollen tube growth, rupture of the pollen tube and the release of the sperm cells. [GOC:tb, PMID:17673660]
25 | GO:0010731 | 0.0361368724016994 | protein glutathionylation | biological_process | The protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. [GOC:BHF, GOC:dph, GOC:rl, GOC:tb]
25 | GO:0018258 | 0.0361368724016994 | protein O-linked glycosylation via hydroxyproline | biological_process | The glycosylation of proteins via 04 atom of hydroxyproline to form O4-glycosyl-L-hydroxyproline; the most common form is arabinofuranosyl-4-proline. [RESID:AA0212]
25 | GO:0019419 | 0.0361368724016994 | sulfate reduction | biological_process | The chemical reactions and pathways resulting in the reduction of sulfate to another sulfur-containing ion or compound such as hydrogen sulfide, adenosine-phosphosulfate (APS) or thiosulfate. [MetaCyc:DISSULFRED-PWY, MetaCyc:P224-PWY, MetaCyc:SO4ASSIM-PWY, MetaCyc:SULFMETII-PWY]
25 | GO:0019856 | 0.0361368724016994 | pyrimidine nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
25 | GO:0022619 | 0.0361368724016994 | generative cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a generative cell. The generative cell gives rise to the sperm cells in the male gametophyte. [GOC:isa_complete]
25 | GO:0030010 | 0.0361368724016994 | establishment of cell polarity | biological_process | The specification and formation of anisotropic intracellular organization or cell growth patterns. [GOC:mah]
25 | GO:0030155 | 0.0361368724016994 | regulation of cell adhesion | biological_process | Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix. [GOC:mah]
25 | GO:0031336 | 0.0361368724016994 | negative regulation of sulfur amino acid metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving sulfur amino acids. [GOC:mah]
25 | GO:0032351 | 0.0361368724016994 | negative regulation of hormone metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving any hormone. [GOC:mah]
25 | GO:0032353 | 0.0361368724016994 | negative regulation of hormone biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones. [GOC:ai]
25 | GO:0032509 | 0.0361368724016994 | endosome transport via multivesicular body sorting pathway | biological_process | The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. [GOC:mah, PMID:12461556, PMID:16689637]
25 | GO:0034389 | 0.0361368724016994 | lipid particle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle. [GOC:dph, GOC:jl, GOC:mah, PMID:18093937, PMID:18250201]
25 | GO:0045337 | 0.0361368724016994 | farnesyl diphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of farnesyl diphosphate. [GOC:jl]
25 | GO:0045338 | 0.0361368724016994 | farnesyl diphosphate metabolic process | biological_process | The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation. [GOC:go_curators]
25 | GO:0045827 | 0.0361368724016994 | negative regulation of isoprenoid metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving isoprenoid. [GOC:go_curators]
25 | GO:0045828 | 0.0361368724016994 | positive regulation of isoprenoid metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving isoprenoid. [GOC:go_curators]
25 | GO:0045834 | 0.0361368724016994 | positive regulation of lipid metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving lipids. [GOC:go_curators]
25 | GO:0046292 | 0.0361368724016994 | formaldehyde metabolic process | biological_process | The chemical reactions and pathways involving formaldehyde (methanal, H2C=O), a colorless liquid or gas with a pungent odor, commonly used as a fixative or an antibacterial agent. [CHEBI:16842, GOC:ai, http://chemfinder.cambridgesoft.com/]
25 | GO:0046889 | 0.0361368724016994 | positive regulation of lipid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids. [GOC:ai]
25 | GO:0048199 | 0.0361368724016994 | vesicle targeting, to, from or within Golgi | biological_process | The process in which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
25 | GO:0048209 | 0.0361368724016994 | regulation of vesicle targeting, to, from or within Golgi | biological_process | Any process that modulates the frequency, rate, or destination of vesicle-mediated transport to, from or within the Golgi apparatus. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
25 | GO:0048281 | 0.0361368724016994 | inflorescence morphogenesis | biological_process | The process in which the anatomical structures of inflorescences are generated and organized. An inflorescence is the part of a seed plant body that is usually above ground and that can bear flowers. [GOC:jid]
25 | [NAME] | 0.0361368724016994 | barbed-end actin filament capping | biological_process | The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. [ISBN:071673706X]
25 | GO:0051175 | 0.0361368724016994 | negative regulation of sulfur metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur. [GOC:ai]
25 | GO:0051211 | 0.0361368724016994 | anisotropic cell growth | biological_process | The process in which a cell irreversibly increases in size in one or more axes, where the growth rate varies according to the direction of growth. Growth may be limited to a particular axis, axes, or to particular locations on the surface of the cell. [GOC:ai]
25 | GO:0051648 | 0.0361368724016994 | [NAME] | biological_process | Any process in which a vesicle or vesicles are transported to, and/or maintained in, a specific location. [GOC:ai]
25 | GO:0051650 | 0.0361368724016994 | establishment of vesicle localization | biological_process | The directed movement of a vesicle to a specific location. [GOC:ai]
25 | GO:0051703 | 0.0361368724016994 | intraspecies interaction between organisms | biological_process | Any process in which an organism has an effect on an organism of the same species. [GOC:ai]
25 | GO:0060627 | 0.0361368724016994 | regulation of vesicle-mediated transport | biological_process | Any process that modulates the rate, frequency, or extent of vesicle-mediated transport, the directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell. [GOC:dph, GOC:tb]
25 | GO:0061062 | 0.0361368724016994 | regulation of nematode larval development | biological_process | Any process that modulates the rate, frequency, or extent of nematode larval development, the process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. [GOC:dph, GOC:kmv]
25 | GO:0071985 | 0.0361368724016994 | multivesicular body sorting pathway | biological_process | A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. [GOC:mah, PMID:17603537]
25 | GO:0090356 | 0.0361368724016994 | negative regulation of auxin metabolic process | biological_process | Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth. [GOC:tb]
25 | GO:1900909 | 0.0361368724016994 | negative regulation of olefin metabolic process | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of olefin metabolic process. [GOC:mengo_curators, GOC:TermGenie]
25 | GO:1900912 | 0.0361368724016994 | negative regulation of olefin biosynthetic process | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of olefin biosynthetic process. [GOC:mengo_curators, GOC:TermGenie]
25 | GO:1901996 | 0.0361368724016994 | regulation of indoleacetic acid biosynthetic process via tryptophan | biological_process | Any process that modulates the frequency, rate or extent of indoleacetic acid biosynthetic process via tryptophan. [GOC:TermGenie, PMID:23377040]
25 | GO:1901997 | 0.0361368724016994 | negative regulation of indoleacetic acid biosynthetic process via tryptophan | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of indoleacetic acid biosynthetic process via tryptophan. [GOC:TermGenie, PMID:23377040]
25 | GO:2000036 | 0.0361368724016994 | regulation of stem cell maintenance | biological_process | Any process that modulates the frequency, rate or extent of stem cell maintenance. [GOC:obol]
25 | [NAME] | 0.0361368724016994 | regulation of stem cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of stem cell differentiation. [GOC:obol]
25 | GO:0042278 | 0.0375888768435152 | purine nucleoside metabolic process | biological_process | The chemical reactions and pathways involving one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:jl, ISBN:[PHONE]]
25 | GO:0046128 | 0.0375888768435152 | purine ribonucleoside metabolic process | biological_process | The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. [GOC:ai]
25 | GO:0010383 | 0.0376536791314736 | cell wall polysaccharide metabolic process | biological_process | The chemical reactions and pathways involving cell wall polysaccharides. [GOC:tair_curators]
25 | GO:0010072 | 0.0383136068322922 | primary shoot apical meristem specification | biological_process | The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers. [GOC:ascb_2009, GOC:dph, GOC:tair_curators, GOC:tb]
25 | GO:0051302 | 0.0383136068322922 | regulation of cell division | biological_process | Any process that modulates the frequency, rate or extent of the physical partitioning and separation of a cell into daughter cells. [GOC:go_curators]
25 | GO:0009119 | 0.0388425244708565 | ribonucleoside metabolic process | biological_process | The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. [CHEBI:18254, GOC:jl]
25 | GO:0072521 | 0.039513578731465 | purine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof. [CHEBI:26401, GOC:mah]
25 | GO:0009123 | 0.039583481188878 | nucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving a nucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
25 | GO:0010540 | 0.039583481188878 | [NAME] transport | biological_process | The unidirectional movement of auxin from the apex to base of an organ, including the shoot, leaf, primary root, or lateral root. [PMID:10677441]
25 | GO:0030811 | 0.039583481188878 | regulation of nucleotide catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides. [GOC:mah]
25 | GO:0033121 | 0.039583481188878 | regulation of purine nucleotide catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides. [GOC:mah]
25 | GO:0051345 | 0.039583481188878 | positive regulation of hydrolase activity | biological_process | Any process that activates or increases the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds. [GOC:ai]
25 | GO:0006972 | 0.0409940183364409 | hyperosmotic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. [GOC:jl, PMID:12142009]
25 | GO:0009116 | 0.0414386262722102 | nucleoside metabolic process | biological_process | The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine). [GOC:ma]
25 | GO:0052546 | 0.043214821861449 | cell wall pectin metabolic process | biological_process | The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall. [GOC:ai]
25 | GO:0043473 | 0.0444000118858241 | pigmentation | biological_process | The deposition or aggregation of coloring matter in an organism, tissue or cell. [GOC:jl]
25 | GO:0043476 | 0.0444000118858241 | pigment accumulation | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to some external stimulus. [GOC:jl]
25 | GO:0043478 | 0.0444000118858241 | pigment accumulation in response to UV light | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to a UV light stimulus. [GOC:jl]
25 | GO:0043479 | 0.0444000118858241 | pigment accumulation in tissues in response to UV light | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
25 | GO:0043480 | 0.0444000118858241 | pigment accumulation in tissues | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to an external stimulus. [GOC:jl]
25 | GO:0043481 | 0.0444000118858241 | anthocyanin accumulation in tissues in response to UV light | biological_process | The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
25 | GO:0006094 | 0.0456870716227766 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
25 | GO:0048193 | 0.0461835785542886 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
25 | GO:0010087 | 0.0469351660254805 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
25 | GO:0045595 | 0.0474629042727598 | regulation of cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of cell differentiation, the process in which relatively unspecialized cells acquire specialized structural and functional features. [GOC:go_curators]
25 | GO:0009118 | 0.0483222252475658 | regulation of nucleoside metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleosides. [GOC:go_curators]
26 | GO:0009965 | 0.000694351468969193 | leaf morphogenesis | biological_process | The process in which the anatomical structures of the leaf are generated and organized. [GOC:go_curators]
26 | GO:0006011 | 0.000967364254860654 | UDP-glucose metabolic process | biological_process | The chemical reactions and pathways involving UDP-glucose, uridinediphosphoglucose, a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai]
26 | GO:0046683 | 0.000967364254860654 | response to organophosphorus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organophosphorus stimulus. Organophosphorus is a compound containing phosphorus bound to an organic molecule; several organophosphorus compounds are used as insecticides, and they are highly toxic cholinesterase inhibitors. [ISBN:[PHONE]]
26 | [NAME] | 0.00284236746032057 | nonphotochemical quenching | biological_process | The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted as heat. This process helps maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage. [PMID:10667783, PMID:10938857]
26 | GO:0048767 | 0.00354479240085292 | [NAME] elongation | biological_process | The process in which the root hair grows longer. [GOC:jid, PMID:12468740]
26 | GO:0009084 | 0.00409316452025834 | glutamine family amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. [GOC:ai]
26 | GO:0006970 | 0.00470861523241443 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
26 | GO:0010075 | 0.00673633548751365 | regulation of meristem growth | biological_process | Any process involved in maintaining the size and shape of a meristem. [GOC:tb]
26 | GO:1901607 | 0.00674265424668269 | alpha-amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alpha-amino acid. [GOC:TermGenie]
26 | GO:0042398 | 0.00799887277192064 | cellular modified amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents. [CHEBI:25359, GOC:ai]
26 | GO:0007389 | 0.00878461034984102 | pattern specification process | biological_process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
26 | GO:0031540 | 0.00909003589192436 | regulation of anthocyanin biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins. [GOC:mah]
26 | GO:0006732 | 0.0101563257916804 | coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:[PHONE]]
26 | GO:0006863 | 0.0102962212068118 | purine nucleobase transport | biological_process | The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:26386, ISBN:[PHONE]]
26 | GO:0006098 | 0.0104461486425318 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
26 | GO:0006740 | 0.0104461486425318 | NADPH regeneration | biological_process | A metabolic process that generates a pool of NADPH by the reduction of NADP+. [GOC:mah]
26 | GO:0006739 | 0.0117412798596624 | NADP metabolic process | biological_process | The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
26 | GO:0015851 | 0.0123855876473408 | nucleobase transport | biological_process | The directed movement of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [ISBN:[PHONE]]
26 | GO:0046496 | 0.0124315580297319 | [NAME] process | biological_process | The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [ISBN:[PHONE]]
26 | GO:0009812 | 0.0127627552846763 | [NAME] process | biological_process | The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins. [GOC:tair_curators, ISBN:[PHONE]]
26 | GO:0019362 | 0.0131512385314326 | [NAME] process | biological_process | The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl]
26 | GO:0006536 | 0.0133565647888657 | glutamate metabolic process | biological_process | The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators]
26 | GO:0009396 | 0.0133565647888657 | folic acid-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of folic acid and its derivatives. [GOC:ai]
26 | GO:0042559 | 0.0133565647888657 | pteridine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid. [GOC:jl, ISBN:[PHONE]]
26 | GO:0016109 | 0.0142194374664431 | tetraterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tetraterpenoid compounds, terpenoids with eight isoprene units. [GOC:go_curators]
26 | GO:0016117 | 0.0142194374664431 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
26 | GO:0072524 | 0.0146815603668145 | pyridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. [CHEBI:26421, GOC:mah]
26 | GO:0016108 | 0.01637617822696 | tetraterpenoid metabolic process | biological_process | The chemical reactions and pathways involving tetraterpenoid compounds, terpenoids with eight isoprene units. [ISBN:[PHONE]]
26 | GO:0016116 | 0.01637617822696 | [NAME] process | biological_process | The chemical reactions and pathways involving carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [ISBN:[PHONE]]
26 | GO:0042440 | 0.0182031716078323 | pigment metabolic process | biological_process | The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:jl, ISBN:[PHONE]]
26 | GO:0009065 | 0.0183182483619926 | glutamine family amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. [GOC:ai]
26 | GO:0009963 | 0.0184909731961482 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
26 | GO:0009813 | 0.0213471998316643 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
26 | GO:0009651 | 0.0219791320148698 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
26 | GO:0015979 | 0.0220286774236902 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
26 | GO:0048653 | 0.0225511585698293 | anther development | biological_process | The process whose specific outcome is the progression of the anther over time, from its formation to the mature structure. [GOC:jid, GOC:sm]
26 | GO:0009069 | 0.0236703792375463 | [NAME] acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
26 | GO:0046148 | 0.0236703792375463 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
26 | GO:0006560 | 0.0239280404347077 | proline metabolic process | biological_process | The chemical reactions and pathways involving proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
26 | GO:0006760 | 0.0239280404347077 | folic acid-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units. [CHEBI:37445, GOC:ai, GOC:mah]
26 | GO:0042558 | 0.0239280404347077 | pteridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid. [GOC:jl, ISBN:[PHONE]]
26 | GO:0009695 | 0.0257351395637835 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
26 | GO:0016051 | 0.0262605415194494 | carbohydrate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. [ISBN:[PHONE]]
26 | GO:0009962 | 0.0271145537878082 | regulation of flavonoid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
26 | GO:0010014 | 0.027252345958297 | meristem initiation | biological_process | Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm]
26 | GO:0071555 | 0.0273643101660215 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
26 | GO:0009799 | 0.0295835030654234 | specification of symmetry | biological_process | The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. [GOC:go_curators]
26 | GO:0009855 | 0.0295835030654234 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
26 | GO:0010224 | 0.0295884392505568 | response to UV-B | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm. [GOC:tb]
26 | GO:0043090 | 0.0295884392505568 | amino acid import | biological_process | The directed movement of amino acids into a cell or organelle. [GOC:jl]
26 | GO:0010104 | 0.0301411270118387 | regulation of ethylene mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of ethylene ([NAME]) mediated signaling. [GOC:tb]
26 | GO:0070297 | 0.0301411270118387 | regulation of phosphorelay signal transduction system | biological_process | Any process that modulates the frequency, rate or extent of signal transduction via a phosphorelay signal transduction system. [GOC:mah]
26 | GO:0051186 | 0.0303595762933221 | cofactor [NAME] process | biological_process | The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. [GOC:ai]
26 | GO:0002833 | 0.0311800447716074 | positive regulation of response to biotic stimulus | biological_process | Any process that activates or increases the frequency, rate, or extent of a response to biotic stimulus. [GOC:add]
26 | GO:0006105 | 0.0311800447716074 | succinate metabolic process | biological_process | The chemical reactions and pathways involving succinate, also known as butanedioate or ethane dicarboxylate, the dianion of succinic acid. Succinate is an important intermediate in metabolism and a component of the TCA cycle. [ISBN:[PHONE]]
26 | GO:0006207 | 0.0311800447716074 | 'de novo' pyrimidine nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases, beginning with the synthesis of a pyrimidine ring from simpler precursors. [GOC:mah, ISBN:[PHONE]]
26 | GO:0006538 | 0.0311800447716074 | glutamate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators]
26 | GO:0006540 | 0.0311800447716074 | glutamate decarboxylation to succinate | biological_process | The chemical reactions and pathways resulting in the formation of succinate from glutamate. Also known as GABA (gamma-aminobutyrate) shunt since it channels glutamate into the TCA cycle bypassing two steps of that cycle. There are three enzymes involved in the GABA shunt: glutamate decarboxylase (GAD), GABA aminotransferase (GABA-TA), and succinate semialdehyde dehydrogenase (SSADH). These three enzymes acting in concert to convert glutamate into succinate. The GABA shunt is predominantly associated with neurotransmission in the mammalian brain. It is also present in nonneuronal cells, in plants, in unicellular eukaryotes, and in prokaryotes. [PMID:12740438]
26 | GO:0009448 | 0.0311800447716074 | gamma-aminobutyric acid metabolic process | biological_process | The chemical reactions and pathways involving gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms. [ISBN:[PHONE]]
26 | GO:0009450 | 0.0311800447716074 | gamma-aminobutyric acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms. [GOC:ai]
26 | GO:0009865 | 0.0311800447716074 | [NAME] adhesion | biological_process | The process in which the pollen tube adheres to cells of the stigma and style. [GOC:tair_curators, PMID:12602877]
26 | GO:0010028 | 0.0311800447716074 | xanthophyll cycle | biological_process | A cyclic series of interconversions involving three xanthophylls, violoxanthin, antheraxanthin, and zeaxanthin. The xanthophyll cycle is involved in regulating energy dissipation in light harvesting complex II. [ISBN:[PHONE]]
26 | GO:0010479 | 0.0311800447716074 | stele development | biological_process | The process whose specific outcome is the progression of the stele over time, from its formation to the mature structure. The stele is the central column of primary vascular tissue in the root and any tissue that it surrounds. [GOC:tb]
26 | GO:0010483 | 0.0311800447716074 | [NAME] | biological_process | Interaction between the pollen tube, part of the male gametophyte, and the ovule, part of the female gametophyte, that results in the arrest of pollen tube growth, rupture of the pollen tube and the release of the sperm cells. [GOC:tb, PMID:17673660]
26 | GO:0014074 | 0.0311800447716074 | response to purine-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus. [CHEBI:26401, GOC:ef]
26 | GO:0016540 | 0.0311800447716074 | protein autoprocessing | biological_process | Processing which a protein carries out itself. This involves actions such as the autolytic removal of residues to generate the mature form of the protein. [GOC:ai, PMID:9335337]
26 | GO:0017186 | 0.0311800447716074 | peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase | biological_process | The chemical reactions and pathways resulting in the formation of peptidyl-pyroglutamic acid, catalyzed by glutaminyl-peptide cyclotransferase. [RESID:AA0031]
26 | GO:0018199 | 0.0311800447716074 | peptidyl-glutamine modification | biological_process | The modification of peptidyl-glutamine. [GOC:go_curators]
26 | GO:0019482 | 0.0311800447716074 | beta-alanine metabolic process | biological_process | The chemical reactions and pathways involving beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins. [GOC:jl, ISBN:[PHONE]]
26 | GO:0019484 | 0.0311800447716074 | beta-alanine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of beta-alanine (3-aminopropanoic acid), an achiral amino acid and an isomer of alanine. It occurs free (e.g. in brain) and in combination (e.g. in pantothenate) but it is not a constituent of proteins. [GOC:jl, ISBN:[PHONE]]
26 | GO:0019856 | 0.0311800447716074 | pyrimidine nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
26 | GO:0030155 | 0.0311800447716074 | regulation of cell adhesion | biological_process | Any process that modulates the frequency, rate or extent of attachment of a cell to another cell or to the extracellular matrix. [GOC:mah]
26 | GO:0031936 | 0.0311800447716074 | negative regulation of chromatin silencing | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing. [GOC:mah]
26 | GO:0033198 | 0.0311800447716074 | response to ATP | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus. [GOC:sl]
26 | GO:0035281 | 0.0311800447716074 | pre-miRNA export from nucleus | biological_process | Transport of pre-microRNAs (pre-miRNAs) from the nucleus to the cytoplasm. Pre-miRNAs are a ~60-70 nucleotide stem loop intermediate in miRNA production, produced by the nuclear cleavage of a primary miRNA (pri-mRNA) transcript. Pre-miRNAs are transported from the nucleus to the cytoplasm where further cleavage occurs to produce a mature miRNA product. [GOC:sl, PMID:14744438]
26 | GO:0043902 | 0.0311800447716074 | positive regulation of multi-organism process | biological_process | Any process that activates or increases the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
26 | GO:0045815 | 0.0311800447716074 | positive regulation of gene expression, epigenetic | biological_process | Any epigenetic process that activates or increases the rate of gene expression. [GOC:go_curators]
26 | GO:0046167 | 0.0311800447716074 | glycerol-3-phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycerol-3-phosphate, a phosphoric monoester of glycerol. [GOC:ai]
26 | GO:0046654 | 0.0311800447716074 | tetrahydrofolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. [ISBN:[PHONE]]
26 | GO:0048281 | 0.0311800447716074 | inflorescence morphogenesis | biological_process | The process in which the anatomical structures of inflorescences are generated and organized. An inflorescence is the part of a seed plant body that is usually above ground and that can bear flowers. [GOC:jid]
26 | GO:0051703 | 0.0311800447716074 | intraspecies interaction between organisms | biological_process | Any process in which an organism has an effect on an organism of the same species. [GOC:ai]
26 | GO:0052573 | 0.0311800447716074 | UDP-D-galactose metabolic process | biological_process | The chemical reactions and pathways involving UDP-D-galactose, a substance composed of D-galactose in glycosidic linkage with guanosine diphosphate. [GOC:ai]
26 | GO:0060969 | 0.0311800447716074 | negative regulation of gene silencing | biological_process | Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. [GOC:dph, GOC:tb]
26 | GO:0080094 | 0.0311800447716074 | response to trehalose-6-phosphate stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose-6-phosphate stimulus. [PMID:19193861]
26 | GO:0097359 | 0.0311800447716074 | UDP-glucosylation | biological_process | The covalent attachment of a UDP-glucose residue to a substrate molecule. [GOC:al]
26 | GO:1901672 | 0.0311800447716074 | positive regulation of systemic acquired resistance | biological_process | Any process that activates or increases the frequency, rate or extent of systemic acquired resistance. [GOC:TermGenie]
26 | GO:0009311 | 0.0327426185980751 | oligosaccharide metabolic process | biological_process | The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. [ISBN:[PHONE]]
26 | GO:0045229 | 0.033578487242268 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
26 | GO:0010218 | 0.0360057801595525 | response to far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb]
26 | GO:0010207 | 0.0360371632161822 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
26 | GO:0006006 | 0.0366520615628477 | [NAME] process | biological_process | The chemical reactions and pathways involving glucose, the aldohexose gluco-hexose. D-glucose is dextrorotatory and is sometimes known as dextrose; it is an important source of energy for living organisms and is found free as well as combined in homo- and hetero-oligosaccharides and polysaccharides. [ISBN:[PHONE]]
26 | GO:0009765 | 0.0369148339708091 | photosynthesis, light harvesting | biological_process | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. [GOC:sm]
26 | GO:0007155 | 0.0377900054659922 | cell adhesion | biological_process | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. [GOC:hb, GOC:pf]
26 | GO:0022610 | 0.0377900054659922 | biological adhesion | biological_process | The attachment of a cell or organism to a substrate or other organism. [GOC:isa_complete]
26 | GO:0009694 | 0.0383230844270186 | [NAME] process | biological_process | The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid. [ISBN:[PHONE]]
26 | GO:0006952 | 0.040157113871772 | defense response | biological_process | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]
26 | GO:0005996 | 0.0415196016510195 | monosaccharide metabolic process | biological_process | The chemical reactions and pathways involving monosaccharides, the simplest carbohydrates. They are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. [ISBN:[PHONE]]
26 | GO:0052542 | 0.0458367526352602 | defense response by callose deposition | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
26 | GO:0006733 | 0.0460079996856447 | oxidoreduction coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed. [GOC:mah]
26 | GO:0012501 | 0.0490723558708501 | programmed cell death | biological_process | A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell. [GOC:lr, GOC:mtg_apoptosis]
27 | GO:0009616 | 0.00325113341029651 | virus induced gene silencing | biological_process | Specific posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes. This silencing is triggered by viral infection, and occurs through a specific decrease in the level of mRNA of both host and viral genes. [GOC:jl]
27 | GO:0010050 | 0.00525192448047712 | vegetative phase change | biological_process | Any process involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development. [GOC:tb]
27 | GO:0007166 | 0.00549691466577887 | cell surface receptor signaling pathway | biological_process | A series of molecular signals initiated by activation of a receptor on the surface of a cell. The pathway begins with binding of an extracellular ligand to a cell surface receptor, or for receptors that signal in the absence of a ligand, by ligand-withdrawal or the activity of a constitutively active receptor. The pathway ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, GOC:pr, GOC:signaling]
27 | GO:0019761 | 0.00946118044162668 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
27 | GO:0010315 | 0.0106061575906419 | auxin efflux | biological_process | The process involved in the transport of auxin out of the cell. [GOC:tair_curators]
27 | GO:0005982 | 0.0108833529928727 | starch metabolic process | biological_process | The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose. [ISBN:[PHONE]]
27 | GO:0006073 | 0.0132240477072792 | cellular glucan metabolic process | biological_process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues. [ISBN:[PHONE]]
27 | GO:0044042 | 0.0132240477072792 | glucan metabolic process | biological_process | The chemical reactions and pathways involving glucans, polysaccharides consisting only of glucose residues. [GOC:jl]
27 | GO:0042126 | 0.0145802697686523 | nitrate metabolic process | biological_process | The chemical reactions and pathways involving nitrates, inorganic or organic salts and esters of nitric acid. [GOC:jl]
27 | GO:0042128 | 0.0145802697686523 | nitrate assimilation | biological_process | The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899]
27 | GO:2001057 | 0.0145802697686523 | reactive nitrogen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive nitrogen species. [GOC:obol]
27 | GO:0009744 | 0.0174869832955073 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
27 | GO:0034285 | 0.0174869832955073 | response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:sart]
27 | GO:0071941 | 0.0190898193967369 | nitrogen cycle metabolic process | biological_process | A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization. [GOC:mah, PMID:16675690, Wikipedia:Nitrogen_cycle]
27 | GO:0010540 | 0.0241024929231507 | [NAME] transport | biological_process | The unidirectional movement of auxin from the apex to base of an organ, including the shoot, leaf, primary root, or lateral root. [PMID:10677441]
27 | GO:0015979 | 0.0244708852218381 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
27 | GO:0009225 | 0.0245340417848699 | nucleotide-sugar metabolic process | biological_process | The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:[PHONE]]
27 | GO:0009607 | 0.0248350321500888 | response to biotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb]
27 | GO:0051707 | 0.0248350321500888 | response to other organism | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism. [GOC:ai]
27 | GO:0010267 | 0.0258397986207051 | production of ta-siRNAs involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs. [GOC:tb, PMID:16129836]
27 | GO:0006465 | 0.0276622961306055 | signal peptide processing | biological_process | The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. [GOC:mah, ISBN:[PHONE]]
27 | GO:0010034 | 0.0276622961306055 | response to acetate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus. [GOC:sm]
27 | GO:0010253 | 0.0276622961306055 | UDP-rhamnose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [PMID:15134748]
27 | GO:0010270 | 0.0276622961306055 | photosystem II oxygen evolving complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the oxygen evolving complex (OEC) of photosystem II on a thylakoid membrane. The OEC protects the calcium-4 manganese-5 oxide cluster which is bound to the D1 and CP43 proteins. The exact protein composition of the OEC varies between cyanobacteria and plants, and in plants consists of three extrinsic nuclear-encoded polypeptides: PsbO, PsbP and PsbQ. [GOC:aa, PMID:16282331]
27 | GO:0010731 | 0.0276622961306055 | protein glutathionylation | biological_process | The protein modification process in which a glutathione molecule is added to a protein amino acid through a disulfide linkage. [GOC:BHF, GOC:dph, GOC:rl, GOC:tb]
27 | GO:0018345 | 0.0276622961306055 | protein palmitoylation | biological_process | The covalent attachment of a palmitoyl group to a protein. [GOC:jl, PMID:15520806]
27 | GO:0019305 | 0.0276622961306055 | dTDP-rhamnose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate. [GOC:ai]
27 | GO:0033478 | 0.0276622961306055 | UDP-rhamnose metabolic process | biological_process | The chemical reactions and pathways involving UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [GOC:mah, PMID:15134748]
27 | GO:0046383 | 0.0276622961306055 | dTDP-rhamnose metabolic process | biological_process | The chemical reactions and pathways involving dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate. [GOC:ai]
27 | [NAME] | 0.0276622961306055 | FAD metabolic process | biological_process | The chemical reactions and pathways involving FAD, the oxidized form of flavin adenine dinucleotide. [CHEBI:16238, ISBN:[PHONE]]
27 | GO:0070291 | 0.0276622961306055 | N-acylethanolamine metabolic process | biological_process | The chemical reactions and pathways involving N-acylethanolamines. An N-acylethanolamine is an ethanolamine substituted at nitrogen by an acyl group. [CHEBI:52640, GOC:elh, PMID:14634025, PMID:15878693]
27 | GO:0071260 | 0.0276622961306055 | cellular response to mechanical stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus. [GOC:mah]
27 | [NAME] | 0.0276622961306055 | cellular response to acetate | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus. [GOC:mah]
27 | GO:0072387 | 0.0276622961306055 | flavin adenine dinucleotide metabolic process | biological_process | The chemical reactions and pathways involving flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes. [CHEBI:24040, GOC:mah]
27 | GO:0080021 | 0.0276622961306055 | response to benzoic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a benzoic acid stimulus. [PMID:18753285]
27 | GO:2000021 | 0.0276622961306055 | regulation of ion homeostasis | biological_process | Any process that modulates the frequency, rate or extent of ion homeostasis. [GOC:obol]
27 | [NAME] | 0.0276622961306055 | negative regulation of stomatal complex development | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of stomatal complex development. [GOC:obol]
27 | GO:0019252 | 0.0282472704210776 | starch biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai]
27 | GO:0044264 | 0.0291468629535502 | cellular polysaccharide metabolic process | biological_process | The chemical reactions and pathways involving polysaccharides, polymers of more than 10 monosaccharide residues joined by glycosidic linkages, as carried out by individual cells. [GOC:jl]
27 | [NAME] | 0.0295873370182992 | cellular calcium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of calcium ions at the level of a cell. [GOC:ceb, GOC:mah]
27 | GO:0009250 | 0.0306028852697777 | glucan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues. [GOC:go_curators]
27 | GO:0009692 | 0.0306106389082146 | ethylene metabolic process | biological_process | The chemical reactions and pathways involving ethylene (C2-H4, [NAME]), a simple hydrocarbon gas that can function in plants as a growth regulator. [ISBN:[PHONE]]
27 | GO:0009693 | 0.0306106389082146 | ethylene biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, [NAME]), a simple hydrocarbon gas that can function in plants as a growth regulator. [ISBN:[PHONE]]
27 | GO:0043449 | 0.0306106389082146 | cellular alkene metabolic process | biological_process | The chemical reactions and pathways involving an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n, as carried out by individual cells. [CHEBI:32878, GOC:jl, Wikipedia:[NAME]]
27 | GO:0043450 | 0.0306106389082146 | alkene biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n. [CHEBI:32878, GOC:jl, Wikipedia:[NAME]]
27 | GO:1900673 | 0.0306106389082146 | [NAME] process | biological_process | The chemical reactions and pathways involving olefin. [GOC:mengo_curators, GOC:TermGenie]
27 | GO:1900674 | 0.0306106389082146 | olefin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of olefin. [GOC:mengo_curators, GOC:TermGenie]
27 | GO:1901699 | 0.0313644495051258 | cellular response to nitrogen compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. [GOC:pr, GOC:TermGenie]
27 | GO:0009626 | 0.0318064629236806 | plant-type hypersensitive response | biological_process | The rapid, localized death of plant cells in response to invasion by a pathogen. [[NAME]]
27 | GO:0034050 | 0.0318064629236806 | host programmed cell death induced by symbiont | biological_process | Cell death in a host resulting from activation of host endogenous cellular processes after direct or indirect interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). An example of direct interaction is contact with penetrating hyphae of a fungus; an example of indirect interaction is encountering symbiont-secreted molecules. [GOC:pamgo_curators]
27 | GO:0007169 | 0.0325105899399024 | [NAME] receptor [NAME] signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:ceb, GOC:signaling]
27 | GO:0051704 | 0.0338061499569041 | multi-organism process | biological_process | A biological process which involves another organism of the same or different species. [GOC:jl]
27 | GO:0009226 | 0.0355147087512311 | nucleotide-sugar biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:[PHONE]]
27 | GO:1901698 | 0.0365653130256673 | response to nitrogen compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. [GOC:pr, GOC:TermGenie]
27 | [NAME] | 0.0374037839572933 | photosynthetic electron transport in photosystem I | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
27 | GO:0007167 | 0.0374678324784954 | enzyme linked receptor protein signaling pathway | biological_process | Any series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell, where the receptor possesses catalytic activity or is closely associated with an enzyme such as a protein kinase, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling, ISBN:[PHONE]]
27 | GO:0043085 | 0.0378457592284046 | positive regulation of catalytic activity | biological_process | Any process that activates or increases the activity of an enzyme. [GOC:jl, GOC:tb]
27 | GO:0044093 | 0.0396251555224281 | positive regulation of molecular function | biological_process | Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. [GO:jl]
27 | GO:0016310 | 0.0400698483372451 | phosphorylation | biological_process | The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide. [ISBN:[PHONE]]
27 | GO:0005976 | 0.0416373635378635 | polysaccharide metabolic process | biological_process | The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, ISBN:[PHONE]]
27 | GO:0002238 | 0.0418562274565055 | response to molecule of fungal origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octamer oligosaccharide. [GOC:rl, GOC:sm]
27 | GO:0007186 | 0.0418562274565055 | G-protein coupled receptor signaling pathway | biological_process | A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription. [GOC:bf, GOC:mah, Wikipedia:G_protein-coupled_receptor]
27 | GO:0055074 | 0.0418562274565055 | calcium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of calcium ions within an organism or cell. [GOC:ceb, GOC:jid, GOC:mah]
27 | GO:0010033 | 0.0425019135994953 | response to organic substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus. [GOC:sm]
27 | GO:0034637 | 0.0433579276923394 | cellular carbohydrate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, carried out by individual cells. [GOC:mah]
27 | GO:0044262 | 0.0437081797837431 | cellular carbohydrate metabolic process | biological_process | The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. [GOC:jl]
27 | GO:0010091 | 0.0485847282392098 | trichome branching | biological_process | Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
27 | GO:0035196 | 0.0486162273136384 | production of miRNAs involved in gene silencing by miRNA | biological_process | Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein. [GOC:dph, GOC:tb, PMID:15066275, PMID:15066283]
27 | GO:0007267 | 0.048908045672195 | cell-cell signaling | biological_process | Any process that mediates the transfer of information from one cell to another. [GOC:mah]
27 | GO:0000271 | 0.0494030529553386 | polysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
27 | [NAME] | 0.0498492994811814 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
28 | GO:0018022 | 0.00322372882034442 | peptidyl-lysine methylation | biological_process | The methylation of peptidyl-lysine to form either the mono-, di- or trimethylated derivative. [GOC:ai]
28 | GO:0007169 | 0.00410348329468685 | [NAME] receptor [NAME] signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:ceb, GOC:signaling]
28 | GO:0006633 | 0.006472254906701 | fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:[PHONE]]
28 | GO:0010359 | 0.0112555752318904 | regulation of anion channel activity | biological_process | Any process that modulates the frequency, rate or extent of anion channel activity. [PMID:17319842]
28 | GO:0010053 | 0.0114058981658038 | root epidermal cell differentiation | biological_process | The process in which a relatively unspecialized cell in the root epidermis acquires the specialized features of a trichoblast or atrichoblast. [GOC:tb]
28 | GO:0014074 | 0.0150303805564966 | response to purine-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus. [CHEBI:26401, GOC:ef]
28 | GO:0015670 | 0.0150303805564966 | carbon dioxide transport | biological_process | The directed movement of carbon dioxide (CO2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
28 | GO:0033198 | 0.0150303805564966 | response to ATP | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus. [GOC:sl]
28 | GO:0043201 | 0.0150303805564966 | response to leucine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus. [GOC:mlg]
28 | GO:0080052 | 0.0150303805564966 | response to histidine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus. [PMID:15889294]
28 | GO:0080053 | 0.0150303805564966 | response to phenylalanine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus. [PMID:15889294]
28 | GO:0080144 | 0.0150303805564966 | amino acid homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of amino acid within an organism or cell. [PMID:19955263]
28 | GO:0080151 | 0.0150303805564966 | positive regulation of salicylic acid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of salicylic acid mediated signal transduction. [PMID:20181750]
28 | GO:1900111 | 0.0150303805564966 | positive regulation of histone H3-K9 dimethylation | biological_process | Any process that activates or increases the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
28 | GO:0022898 | 0.0156541346591218 | regulation of transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of transmembrane transporter activity. [GOC:dph, GOC:mtg_cardio, GOC:mtg_transport]
28 | GO:0032409 | 0.0156541346591218 | regulation of transporter activity | biological_process | Any process that modulates the activity of a transporter. [GOC:mah]
28 | GO:0032412 | 0.0156541346591218 | regulation of ion transmembrane transporter activity | biological_process | Any process that modulates the activity of an ion transporter. [GOC:mah, GOC:tb]
28 | GO:0040034 | 0.0156541346591218 | regulation of development, heterochronic | biological_process | Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and the rate at which this time point is reached. [PMID:9442909]
28 | GO:0044070 | 0.0233909050571909 | regulation of anion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
28 | GO:0010015 | 0.0256241919727406 | root morphogenesis | biological_process | The process in which the anatomical structures of roots are generated and organized. The root is the usually underground part of a seed plant body that originates from the hypocotyl, functions as an organ of absorption, aeration, and food storage or as a means of anchorage and support. [GOC:sm, ISBN:[PHONE]]
28 | GO:0009686 | 0.0262537743342861 | [NAME] biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [ISBN:[PHONE]]
28 | GO:0016102 | 0.0262537743342861 | [NAME] biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of diterpenoid compounds, terpenoids with four isoprene units. [GOC:mah, ISBN:[PHONE]]
28 | GO:0006154 | 0.0298372163517552 | adenosine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. [GOC:go_curators]
28 | GO:0009652 | 0.0298372163517552 | thigmotropism | biological_process | The movement of an organism, or part of an organism, such as leaves or tendrils, in response to a touch stimulus, usually toward or away from it. [GOC:jl, PMID:16153165]
28 | GO:0009830 | 0.0298372163517552 | cell wall modification involved in abscission | biological_process | A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. [GOC:dph, GOC:lr, GOC:sdb_2009, GOC:tb]
28 | GO:0015669 | 0.0298372163517552 | gas transport | biological_process | The directed movement of substances that are gaseous in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
28 | GO:0018027 | 0.0298372163517552 | peptidyl-lysine dimethylation | biological_process | The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine. [RESID:AA0075]
28 | GO:0036123 | 0.0298372163517552 | histone H3-K9 dimethylation | biological_process | The modification of histone H3 by addition of two methyl groups to lysine at position 9 of the histone. [GOC:vw]
28 | GO:0044277 | 0.0298372163517552 | cell wall disassembly | biological_process | A process that results in the breakdown of the cell wall. [GOC:jl]
28 | GO:0046683 | 0.0298372163517552 | response to organophosphorus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organophosphorus stimulus. Organophosphorus is a compound containing phosphorus bound to an organic molecule; several organophosphorus compounds are used as insecticides, and they are highly toxic cholinesterase inhibitors. [ISBN:[PHONE]]
28 | GO:0048826 | 0.0298372163517552 | cotyledon morphogenesis | biological_process | The process in which the anatomical structures of the cotyledon are generated and organized. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
28 | GO:0051574 | 0.0298372163517552 | positive regulation of histone H3-K9 methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
28 | GO:0060919 | 0.0298372163517552 | auxin influx | biological_process | The process involved in the transport of auxin into the cell. [GOC:dph, GOC:tb]
28 | GO:1900109 | 0.0298372163517552 | regulation of histone H3-K9 dimethylation | biological_process | Any process that modulates the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
28 | GO:0009685 | 0.0323771096803437 | [NAME] process | biological_process | The chemical reactions and pathways involving gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [ISBN:[PHONE]]
28 | GO:0016101 | 0.0323771096803437 | [NAME] process | biological_process | The chemical reactions and pathways involving diterpenoid compounds, terpenoids with four isoprene units. [ISBN:[PHONE]]
28 | GO:0022622 | 0.0414015216824075 | root system development | biological_process | The process whose specific outcome is the progression of the root system over time, from its formation to the mature structure. [GOC:isa_complete]
28 | GO:0048364 | 0.0414015216824075 | root development | biological_process | The process whose specific outcome is the progression of the root over time, from its formation to the mature structure. The root is the water- and mineral-absorbing part of a plant which is usually underground, does not bear leaves, tends to grow downwards and is typically derived from the radicle of the embryo. [GOC:jid, PO:0009005]
28 | GO:0010067 | 0.0444237969121455 | procambium histogenesis | biological_process | The formation of the primary meristem or meristematic tissue that gives rise to the primary vascular tissue. [GOC:tb, ISBN:[PHONE]]
28 | [NAME] | 0.0444237969121455 | nonphotochemical quenching | biological_process | The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted as heat. This process helps maintain the balance between dissipation and utilization of light energy to minimize generation of oxidizing molecules, thereby protecting the plant against photo-oxidative damage. [PMID:10667783, PMID:10938857]
28 | GO:0031058 | 0.0444237969121455 | positive regulation of histone modification | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent alteration of a histone. [GOC:mah]
28 | GO:0031062 | 0.0444237969121455 | positive regulation of histone methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones. [GOC:mah]
28 | GO:0032922 | 0.0444237969121455 | circadian regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours. [GOC:mah]
28 | GO:0042938 | 0.0444237969121455 | dipeptide transport | biological_process | The directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:46761, GOC:jl]
28 | GO:0045962 | 0.0444237969121455 | positive regulation of development, heterochronic | biological_process | Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and increases the rate at which this time point is reached. [GOC:go_curators]
28 | GO:0048587 | 0.0444237969121455 | regulation of short-day photoperiodism, flowering | biological_process | Any process that modulates the frequency, rate or extent of short-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
28 | GO:0051570 | 0.0444237969121455 | regulation of histone H3-K9 methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
28 | GO:1990066 | 0.0444237969121455 | energy quenching | biological_process | The process by which excess light energy absorbed by chlorophyll and not used to drive photosynthesis is emitted by nonphotochemical quenching or chlorophyll fluorescence. [PMID:10938857]
28 | GO:0009913 | 0.0452792955088094 | epidermal cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epidermal cell, any of the cells making up the epidermis. [GOC:dph, GOC:go_curators, GOC:mtg_sensu, GOC:sdb_2009, GOC:tb]
28 | GO:0030855 | 0.0452792955088094 | epithelial cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an epithelial cell, any of the cells making up an epithelium. [GOC:ecd, PMID:11839751]
28 | GO:0060429 | 0.0452792955088094 | epithelium development | biological_process | The process whose specific outcome is the progression of an epithelium over time, from its formation to the mature structure. An epithelium is a tissue that covers the internal or external surfaces of an anatomical structure. [GOC:dph, GOC:mtg_lung]
28 | GO:0009932 | 0.0459435194010228 | cell tip growth | biological_process | Growth that occurs specifically at the tip of a cell. [GOC:jid]
28 | GO:0009060 | 0.0460894078569841 | aerobic respiration | biological_process | The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:jl, ISBN:[PHONE]]
28 | GO:0008544 | 0.0463477961812807 | epidermis development | biological_process | The process whose specific outcome is the progression of the epidermis over time, from its formation to the mature structure. The epidermis is the outer epithelial layer of a plant or animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species. [GOC:go_curators, UBERON:0001003]
28 | GO:0032268 | 0.0479757912582922 | regulation of cellular protein metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. [GOC:mah]
28 | GO:0048589 | 0.0484426364868489 | developmental growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. [GOC:go_curators]
29 | GO:0015992 | 0.00678450575134254 | proton transport | biological_process | The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
29 | GO:0046854 | 0.00863441509817774 | phosphatidylinositol phosphorylation | biological_process | The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:[PHONE]]
29 | GO:0008285 | 0.016149664214979 | negative regulation of cell proliferation | biological_process | Any process that stops, prevents or reduces the rate or extent of cell proliferation. [GOC:go_curators]
29 | GO:0010042 | 0.016149664214979 | response to manganese ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a manganese ion stimulus. [GOC:sm]
29 | GO:0010047 | 0.016149664214979 | fruit dehiscence | biological_process | The process leading to the spontaneous opening of the fruit permitting the escape of seeds. [GOC:tb, ISBN:[PHONE]]
29 | [NAME] | 0.016149664214979 | response to acidity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. [GOC:tb]
29 | GO:0010477 | 0.016149664214979 | response to sulfur dioxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sulfur dioxide (SO2) stimulus. [PMID:17425719]
29 | GO:0030497 | 0.016149664214979 | fatty acid elongation | biological_process | The elongation of a fatty acid chain by the sequential addition of two-carbon units. [ISBN:[PHONE]]
29 | GO:0045337 | 0.016149664214979 | farnesyl diphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of farnesyl diphosphate. [GOC:jl]
29 | GO:0045338 | 0.016149664214979 | farnesyl diphosphate metabolic process | biological_process | The chemical reactions and pathways involving farnesyl diphosphate, an intermediate in carotenoid, sesquiterpene, squalene and sterol biosynthesis, as well as a substrate in protein farnesylation. [GOC:go_curators]
29 | GO:0050982 | 0.016149664214979 | detection of mechanical stimulus | biological_process | The series of events by which a mechanical stimulus is received by a cell and converted into a molecular signal. [GOC:ai]
29 | [NAME] | 0.016149664214979 | barbed-end actin filament capping | biological_process | The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. [ISBN:071673706X]
29 | GO:1900111 | 0.016149664214979 | positive regulation of histone H3-K9 dimethylation | biological_process | Any process that activates or increases the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
29 | GO:0046777 | 0.0215144419233538 | protein autophosphorylation | biological_process | The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. [ISBN:[PHONE]]
29 | GO:0048573 | 0.0215144419233538 | photoperiodism, flowering | biological_process | A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
29 | GO:0009648 | 0.0237271771040341 | photoperiodism | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
29 | GO:0034220 | 0.0258996399704992 | ion transmembrane transport | biological_process | A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
29 | GO:0006121 | 0.032041057772165 | mitochondrial electron transport, succinate to ubiquinone | biological_process | The transfer of electrons from succinate to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex II. [ISBN:[PHONE]]
29 | GO:0006419 | 0.032041057772165 | alanyl-tRNA aminoacylation | biological_process | The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
29 | GO:0006530 | 0.032041057772165 | asparagine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of asparagine, 2-amino-3-carbamoylpropanoic acid. [GOC:go_curators]
29 | GO:0009268 | 0.032041057772165 | response to pH | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. [GOC:jl]
29 | GO:0009903 | 0.032041057772165 | chloroplast avoidance movement | biological_process | The relocation process in which chloroplasts in photosynthetic cells avoid strong light and move away from it in order to preserve the photosynthetic machinery. [GOC:tb, PMID:11978863]
29 | GO:0009904 | 0.032041057772165 | chloroplast accumulation movement | biological_process | The relocation process in which chloroplasts in photosynthetic cells move toward a brighter area in a cell to optimize photosynthesis. [GOC:tb, PMID:11978863]
29 | GO:0010044 | 0.032041057772165 | response to aluminum ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. [GOC:sm]
29 | GO:0015693 | 0.032041057772165 | magnesium ion transport | biological_process | The directed movement of magnesium ([NAME]) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
29 | GO:0018027 | 0.032041057772165 | peptidyl-lysine dimethylation | biological_process | The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine. [RESID:AA0075]
29 | GO:0019566 | 0.032041057772165 | arabinose metabolic process | biological_process | The chemical reactions and pathways involving arabinose, arabino-pentose. L-Arabinose occurs both free, for example in the heartwood of many conifers, and in the combined state, as a constituent of plant hemicelluloses, bacterial polysaccharides etc. D-arabinose is a constituent of arabinonucleosides. [ISBN:[PHONE]]
29 | GO:0032881 | 0.032041057772165 | regulation of polysaccharide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving polysaccharides. [GOC:mah]
29 | GO:0033345 | 0.032041057772165 | asparagine catabolic process via L-aspartate | biological_process | The chemical reactions and pathways resulting in the breakdown of glutamate, via the intermediate L-aspartate. [GOC:mah]
29 | GO:0036123 | 0.032041057772165 | histone H3-K9 dimethylation | biological_process | The modification of histone H3 by addition of two methyl groups to lysine at position 9 of the histone. [GOC:vw]
29 | GO:0051289 | 0.032041057772165 | protein homotetramerization | biological_process | The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits. [GOC:go_curators]
29 | GO:0051574 | 0.032041057772165 | positive regulation of histone H3-K9 methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
29 | GO:0071421 | 0.032041057772165 | manganese ion transmembrane transport | biological_process | A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
29 | GO:1900109 | 0.032041057772165 | regulation of histone H3-K9 dimethylation | biological_process | Any process that modulates the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
29 | GO:2000904 | 0.032041057772165 | regulation of starch metabolic process | biological_process | Any process that modulates the frequency, rate or extent of starch metabolic process. [GOC:obol]
29 | GO:0009735 | 0.0355668153139449 | response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl]
29 | GO:0006633 | 0.0383196676444341 | fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:[PHONE]]
29 | GO:0010072 | 0.0444324411806311 | primary shoot apical meristem specification | biological_process | The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers. [GOC:ascb_2009, GOC:dph, GOC:tair_curators, GOC:tb]
29 | GO:0006516 | 0.0476782703706753 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. [GOC:go_curators, ISBN:[PHONE]]
29 | GO:0006828 | 0.0476782703706753 | manganese ion transport | biological_process | The directed movement of manganese (Mn) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
29 | GO:0009900 | 0.0476782703706753 | dehiscence | biological_process | The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it. [ISBN:[PHONE]]
29 | GO:0010289 | 0.0476782703706753 | homogalacturonan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the pectidic homogalacturonan, characterized by a backbone of (1->4)-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3. [PMID:12913136, PMID:16540543]
29 | GO:0030026 | 0.0476782703706753 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
29 | GO:0030433 | 0.0476782703706753 | ER-associated protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of proteins transported from the endoplasmic reticulum and targeted to cytoplasmic proteasomes for degradation. This process acts on misfolded proteins as well as in the regulated degradation of correctly folded proteins. [GOC:mah, GOC:rb, PMID:14607247, PMID:19520858]
29 | GO:0031058 | 0.0476782703706753 | positive regulation of histone modification | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent alteration of a histone. [GOC:mah]
29 | GO:0031062 | 0.0476782703706753 | positive regulation of histone methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones. [GOC:mah]
29 | GO:0032922 | 0.0476782703706753 | circadian regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours. [GOC:mah]
29 | GO:0048587 | 0.0476782703706753 | regulation of short-day photoperiodism, flowering | biological_process | Any process that modulates the frequency, rate or extent of short-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
29 | GO:0048830 | 0.0476782703706753 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
29 | GO:0051262 | 0.0476782703706753 | protein tetramerization | biological_process | The formation of a protein tetramer, a macromolecular structure consisting of four noncovalently associated identical or nonidentical subunits. [GOC:ecd]
29 | GO:0051570 | 0.0476782703706753 | regulation of histone H3-K9 methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
29 | GO:0055071 | 0.0476782703706753 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
29 | GO:0072330 | 0.0483093096193732 | monocarboxylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
30 | GO:0042542 | 0.000137303053688701 | response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl]
30 | GO:0010106 | 0.000149427489992355 | cellular response to iron ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions. [GOC:mg]
30 | GO:0006826 | 0.000721710269230562 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
30 | GO:0006457 | 0.000775233076419243 | protein folding | biological_process | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb]
30 | GO:0009862 | 0.00092931280251276 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
30 | GO:0009644 | 0.000972112684148928 | response to high light intensity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:go_curators]
30 | GO:0006995 | 0.00101590868699073 | cellular response to nitrogen starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. [GOC:jl]
30 | GO:0010215 | 0.00108169273997683 | cellulose microfibril organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730]
30 | GO:0070370 | 0.00108169273997683 | cellular heat acclimation | biological_process | Any process that increases heat tolerance of a cell in response to high temperatures. [GOC:jp]
30 | GO:0010310 | 0.00112628985230687 | regulation of hydrogen peroxide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. [PMID:14765119]
30 | GO:0009831 | 0.00213620449334379 | plant-type cell wall modification involved in multidimensional cell growth | biological_process | The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
30 | GO:0006098 | 0.00247927824199362 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
30 | [NAME] | 0.00306033822081245 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
30 | GO:0010207 | 0.00391113181737278 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
30 | GO:0035304 | 0.00524225671691684 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
30 | GO:0009828 | 0.00719924263500227 | plant-type cell wall loosening | biological_process | The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
30 | GO:0055062 | 0.00947910536651035 | phosphate ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of phosphate ions within an organism or cell. [GOC:jid, GOC:mah]
30 | [NAME] | 0.0108900377339671 | response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:sm]
30 | GO:0006949 | 0.0120354383464132 | syncytium formation | biological_process | The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division. [ISBN:[PHONE]]
30 | GO:0072511 | 0.0132849637847129 | divalent inorganic cation transport | biological_process | The directed movement of inorganic cations with a valency of two into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage. [GOC:mah]
30 | GO:0009408 | 0.014732900255308 | response to heat | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr]
30 | GO:0009765 | 0.0148569729643564 | photosynthesis, light harvesting | biological_process | Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers. [GOC:sm]
30 | GO:0031122 | 0.0148569729643564 | cytoplasmic microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cytoplasm of a cell. [GOC:mah]
30 | GO:0009755 | 0.0148882893915416 | hormone-mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of a hormone. [GOC:sm]
30 | GO:0034976 | 0.0152920870113197 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
30 | GO:0048509 | 0.0172166005314875 | regulation of meristem development | biological_process | Any process that modulates the frequency, rate or extent of meristem development, the biological process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure. [GOC:jid]
30 | GO:0090332 | 0.0179327650260941 | stomatal closure | biological_process | The process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. [GOC:tb]
30 | GO:0019344 | 0.0179420762715695 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
30 | [NAME] | 0.018688324810975 | [NAME] process | biological_process | The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
30 | GO:0009070 | 0.018688324810975 | [NAME] amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
30 | GO:0010089 | 0.0191843338143392 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
30 | GO:0009953 | 0.0191877198593828 | dorsal/ventral pattern formation | biological_process | The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. [GOC:dph, GOC:go_curators, GOC:isa_complete, GOC:tb]
30 | GO:0010253 | 0.0191877198593828 | UDP-rhamnose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [PMID:15134748]
30 | GO:0010266 | 0.0191877198593828 | response to vitamin B1 | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin B1 stimulus. [GOC:pz]
30 | GO:0015744 | 0.0191877198593828 | succinate transport | biological_process | The directed movement of succinate, the dianion of ethane dicarboxylic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
30 | GO:0030397 | 0.0191877198593828 | membrane disassembly | biological_process | The controlled breakdown of any cell membrane in the context of a normal process such as autophagy. [GOC:mah]
30 | GO:0031647 | 0.0191877198593828 | regulation of protein stability | biological_process | Any process that affects the structure and integrity of a protein by altering the likelihood of its degradation or aggregation. [GOC:dph, GOC:mah, GOC:tb]
30 | GO:0033478 | 0.0191877198593828 | UDP-rhamnose metabolic process | biological_process | The chemical reactions and pathways involving UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [GOC:mah, PMID:15134748]
30 | GO:0046473 | 0.0191877198593828 | phosphatidic acid metabolic process | biological_process | The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. [ISBN:[PHONE]]
30 | GO:0048262 | 0.0191877198593828 | determination of dorsal/ventral asymmetry | biological_process | Determination of asymmetry from the dorsal to the ventral side; as, the dorsoventral axis. [GOC:jid]
30 | GO:0048263 | 0.0191877198593828 | determination of dorsal identity | biological_process | Determination of the identity of part of an organism or organ where those parts are of the type that occur in the dorsal region. Identity is considered to be the aggregate of characteristics by which a structure is recognized. [GOC:jid]
30 | GO:0050821 | 0.0191877198593828 | protein stabilization | biological_process | Any process involved in maintaining the structure and integrity of a protein and preventing it from degradation or aggregation. [GOC:ai]
30 | GO:0060148 | 0.0191877198593828 | positive regulation of posttranscriptional gene silencing | biological_process | Any process that increases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
30 | GO:0071422 | 0.0191877198593828 | [NAME] | biological_process | A process in which a succinate ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
30 | GO:0032870 | 0.0203890894373968 | cellular response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:mah]
30 | GO:0071495 | 0.0213538876807567 | cellular response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:mah]
30 | GO:0006833 | 0.0221746944060537 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
30 | [NAME] | 0.0221746944060537 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
30 | GO:0048439 | 0.0227991426285665 | flower morphogenesis | biological_process | The process in which the anatomical structures of the flower are generated and organized. [GOC:go_curators]
30 | GO:0003002 | 0.0242763849571726 | regionalization | biological_process | The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. [GOC:dph, GOC:isa_complete]
30 | GO:0009963 | 0.0247359057417012 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
30 | GO:0009816 | 0.0248049181774117 | defense response to bacterium, incompatible interaction | biological_process | A response of an organism to a bacterium that prevents the occurrence or spread of disease. [GOC:lr]
30 | GO:0009595 | 0.026758846081364 | detection of biotic stimulus | biological_process | The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal. [GOC:hb]
30 | GO:0010243 | 0.0283377294858163 | response to organic nitrogen | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. An organic nitrogen compound is formally a compound containing at least one carbon-nitrogen bond. [CHEBI:35352, PMID:9869419]
30 | GO:0009817 | 0.0285809407055954 | defense response to fungus, incompatible interaction | biological_process | A response of an organism to a fungus that prevents the occurrence or spread of disease. [GOC:lr]
30 | GO:0071365 | 0.0310624675378406 | cellular response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:mah]
30 | GO:0010087 | 0.0357074979514237 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
30 | GO:0044036 | 0.0366941815068828 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
30 | GO:0019722 | 0.0367642403183113 | calcium-mediated signaling | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via calcium ions. [GOC:signaling]
30 | GO:0009228 | 0.038010280808588 | thiamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. [CHEBI:18385, GOC:jl, ISBN:[PHONE]]
30 | GO:0010201 | 0.038010280808588 | response to continuous far red light stimulus by the high-irradiance response system | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence. [GOC:mtg_far_red, GOC:sm]
30 | GO:0010600 | 0.038010280808588 | regulation of auxin biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth. [PMID:18287041]
30 | GO:0016145 | 0.038010280808588 | S-glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
30 | GO:0019759 | 0.038010280808588 | glycosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
30 | GO:0019762 | 0.038010280808588 | glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
30 | GO:0030002 | 0.038010280808588 | cellular anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of anions at the level of a cell. [GOC:ceb, GOC:mah]
30 | GO:0030643 | 0.038010280808588 | cellular phosphate ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of phosphate ions at the level of a cell. [GOC:mah]
30 | GO:0033273 | 0.038010280808588 | response to vitamin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus. [GOC:sl]
30 | GO:0042344 | 0.038010280808588 | indole glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [http://www.onelook.com]
30 | GO:0042724 | 0.038010280808588 | thiamine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), and related compounds. [CHEBI:26948, GOC:jl]
30 | GO:0051365 | 0.038010280808588 | cellular response to potassium ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions. [GOC:sm]
30 | [NAME] | 0.038010280808588 | regulation of posttranscriptional gene silencing | biological_process | Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
30 | GO:0071366 | 0.038010280808588 | cellular response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [GOC:mah]
30 | GO:0071786 | 0.038010280808588 | endoplasmic reticulum tubular network organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that comprises the membranes with high curvature in cross-section. [GOC:vw, PMID:16469703, PMID:20434336]
30 | GO:0072502 | 0.038010280808588 | cellular trivalent inorganic anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of trivalent inorganic anions at the level of a cell. [GOC:mah]
30 | GO:0080060 | 0.038010280808588 | integument development | biological_process | The process whose specific outcome is the progression of the integument over time, from its formation to the mature structure. Integument is one of the layers of tissue that usually covers the ovule, enveloping the nucellus and forming the micropyle at the apex. [NAME], PO:0020021]
30 | GO:0009962 | 0.0381568770724181 | regulation of flavonoid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
30 | GO:0070838 | 0.0395716689481936 | divalent metal ion transport | biological_process | The directed movement of divalent metal cations, any metal ion with a +2 electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
30 | GO:0007389 | 0.0434135126683966 | pattern specification process | biological_process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
30 | GO:0009069 | 0.0434135126683966 | [NAME] acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
30 | GO:0006970 | 0.0472869950178397 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
30 | GO:0006790 | 0.048122128683754 | sulfur compound metabolic process | biological_process | The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:ai]
30 | GO:0009813 | 0.048902892903225 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
31 | GO:0007169 | 0.000174106195302901 | [NAME] receptor [NAME] signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses tyrosine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:ceb, GOC:signaling]
31 | GO:0031062 | 0.000433819708428785 | positive regulation of histone methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of methyl groups to histones. [GOC:mah]
31 | GO:0070734 | 0.000433819708428785 | histone H3-K27 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. [GOC:mah]
31 | GO:0010383 | 0.00142304021486514 | cell wall polysaccharide metabolic process | biological_process | The chemical reactions and pathways involving cell wall polysaccharides. [GOC:tair_curators]
31 | GO:0007205 | 0.00142336420964648 | protein kinase C-activating G-protein coupled receptor signaling pathway | biological_process | The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand, where the pathway proceeds with activation of protein kinase C (PKC). PKC is activated by second messengers including diacylglycerol (DAG). [GOC:mah, GOC:signaling]
31 | GO:0018022 | 0.00211824338836578 | peptidyl-lysine methylation | biological_process | The methylation of peptidyl-lysine to form either the mono-, di- or trimethylated derivative. [GOC:ai]
31 | GO:0048575 | 0.0029422223991403 | short-day photoperiodism, flowering | biological_process | A change from vegetative to reproductive phase as a result of detection of, or exposure to, a period of light that falls short of the critical day length. The critical day length varies between species. Although the term is short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 minus the critical day length. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
31 | GO:0071669 | 0.00638427808017779 | plant-type cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. [GOC:ecd, GOC:mah]
31 | GO:0045229 | 0.00775030251358893 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
31 | GO:0052541 | 0.0104242478317177 | plant-type cell wall cellulose metabolic process | biological_process | The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall. [GOC:mah, ISBN:[PHONE]]
31 | GO:0051569 | 0.0121522225775696 | regulation of histone H3-K4 methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. [GOC:ai]
31 | GO:0051571 | 0.0121522225775696 | positive regulation of histone H3-K4 methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 4 of histone H3. [GOC:mah]
31 | GO:0061085 | 0.0121522225775696 | regulation of histone H3-K27 methylation | biological_process | Any process that modulates the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. [GOC:dph, GOC:tb]
31 | GO:0061087 | 0.0121522225775696 | positive regulation of histone H3-K27 methylation | biological_process | Any process that increases the rate, frequency, or extent of histone H3-K27 methylation. Histone H3-K27 methylation is the modification of histone H3 by addition of a methyl group to lysine at position 27 of the histone. [GOC:dph, GOC:tb]
31 | GO:0080088 | 0.0121522225775696 | spermidine hydroxycinnamate conjugate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates. [PMID:19077165]
31 | GO:1900111 | 0.0121522225775696 | positive regulation of histone H3-K9 dimethylation | biological_process | Any process that activates or increases the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
31 | GO:0042546 | 0.0135292819700366 | cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:[PHONE]]
31 | GO:0007000 | 0.0138142953273923 | nucleolus organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleolus. [GOC:dph, GOC:jid, GOC:jl, GOC:mah]
31 | GO:0030838 | 0.014097627566276 | positive regulation of actin filament polymerization | biological_process | Any process that activates or increases the frequency, rate or extent of actin polymerization. [GOC:mah]
31 | [NAME] | 0.014097627566276 | [NAME] nucleation | biological_process | The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament. [ISBN:[PHONE]]
31 | GO:0031334 | 0.0159856717874141 | positive regulation of protein complex assembly | biological_process | Any process that activates or increases the frequency, rate or extent of protein complex assembly. [GOC:mah]
31 | GO:0032273 | 0.0159856717874141 | positive regulation of protein polymerization | biological_process | Any process that activates or increases the frequency, rate or extent of the process of creating protein polymers. [GOC:mah]
31 | GO:0008064 | 0.0169805168758118 | regulation of actin polymerization or depolymerization | biological_process | Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. [GOC:mah]
31 | GO:0009926 | 0.0169805168758118 | auxin polar transport | biological_process | The unidirectional movement of auxin in the stem from tip to base along the vector of gravity or basipetally. [GOC:sm]
31 | GO:0030041 | 0.0169805168758118 | actin filament polymerization | biological_process | Assembly of actin filaments by the addition of actin monomers to a filament. [GOC:mah]
31 | GO:0030832 | 0.0169805168758118 | regulation of actin filament length | biological_process | Any process that controls the length of actin filaments in a cell. [GOC:dph, GOC:mah]
31 | GO:0030833 | 0.0169805168758118 | regulation of actin filament polymerization | biological_process | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. [GOC:mah]
31 | GO:0032956 | 0.0169805168758118 | regulation of actin cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. [GOC:mah]
31 | [NAME] | 0.0169805168758118 | regulation of actin filament-based process | biological_process | Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the actin cytoskeleton. [GOC:mah]
31 | GO:0051495 | 0.0169805168758118 | positive regulation of cytoskeleton organization | biological_process | Any process that activates or increases the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:ai]
31 | GO:0008154 | 0.019072388288853 | [NAME] polymerization or depolymerization | biological_process | Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. [GOC:mah]
31 | GO:0009914 | 0.019072388288853 | hormone transport | biological_process | The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:tb]
31 | GO:0032271 | 0.019072388288853 | regulation of protein polymerization | biological_process | Any process that modulates the frequency, rate or extent of the process of creating protein polymers. [GOC:mah]
31 | GO:0043254 | 0.019072388288853 | regulation of protein complex assembly | biological_process | Any process that modulates the frequency, rate or extent of protein complex assembly. [GOC:jl]
31 | GO:0045491 | 0.019072388288853 | [NAME] process | biological_process | The chemical reactions and pathways involving xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668]
31 | GO:0060918 | 0.019072388288853 | auxin transport | biological_process | The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb]
31 | GO:0051258 | 0.0201695700861134 | protein polymerization | biological_process | The process of creating protein polymers, compounds composed of a large number of component monomers; [NAME] may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein. [GOC:ai]
31 | GO:0051493 | 0.0201695700861134 | regulation of cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:ai]
31 | GO:0044087 | 0.0213009883707533 | regulation of cellular component biogenesis | biological_process | Any process that modulates the frequency, rate or extent of cellular component biogenesis, a process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. [GOC:jl]
31 | GO:0050793 | 0.0217119666784599 | regulation of developmental process | biological_process | Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:go_curators]
31 | GO:0010410 | 0.0224666748936831 | [NAME] process | biological_process | The chemical reactions and pathways involving hemicelluloses, plant cell wall polysaccharides that have a backbone of 1,4-linked beta-D-pyranosyl residues in which O4 is in the equatorial orientation. Many different hemicelluloses usually occur intermixed with each molecular type representing different degrees of polymerization and contain many different sugar monomers, which can include glucose, xylose, mannose, galactose, and arabinose. Hemicelluloses also contain most of the D-pentose sugars and occasionally small amounts of L-sugars as well. [NAME] is always the sugar monomer present in the largest amount, but mannuronic acid and galacturonic acid also tend to be present. [GOC:tair_curators]
31 | GO:0071555 | 0.0232742056423073 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
31 | GO:0006168 | 0.024158688447476 | adenine salvage | biological_process | Any process that generates adenine, 6-aminopurine, from derivatives of it without de novo synthesis. [GOC:jl]
31 | GO:0007178 | 0.024158688447476 | [NAME] receptor protein serine/threonine kinase signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling]
31 | GO:0009113 | 0.024158688447476 | purine nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [CHEBI:26386, GOC:go_curators, ISBN:[PHONE]]
31 | GO:0018027 | 0.024158688447476 | peptidyl-lysine dimethylation | biological_process | The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine. [RESID:AA0075]
31 | GO:0036123 | 0.024158688447476 | histone H3-K9 dimethylation | biological_process | The modification of histone H3 by addition of two methyl groups to lysine at position 9 of the histone. [GOC:vw]
31 | GO:0043096 | 0.024158688447476 | purine nucleobase salvage | biological_process | Any process that generates purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, from derivatives of them without de novo synthesis. [CHEBI:26386, GOC:jl]
31 | GO:0046083 | 0.024158688447476 | adenine metabolic process | biological_process | The chemical reactions and pathways involving adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. [GOC:go_curators]
31 | GO:0046084 | 0.024158688447476 | adenine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of adenine, 6-aminopurine, one of the five main bases found in nucleic acids and a component of numerous important derivatives of its corresponding ribonucleoside, adenosine. [GOC:go_curators]
31 | GO:0051574 | 0.024158688447476 | positive regulation of histone H3-K9 methylation | biological_process | Any process that activates or increases the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
31 | GO:0060919 | 0.024158688447476 | auxin influx | biological_process | The process involved in the transport of auxin into the cell. [GOC:dph, GOC:tb]
31 | GO:1900109 | 0.024158688447476 | regulation of histone H3-K9 dimethylation | biological_process | Any process that modulates the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
31 | GO:0009410 | 0.0263634036660337 | response to xenobiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms. [GOC:jl]
31 | GO:0052546 | 0.028774797334869 | cell wall pectin metabolic process | biological_process | The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall. [GOC:ai]
31 | [NAME] | 0.0308375609417199 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
31 | GO:0030968 | 0.03302413643823 | endoplasmic reticulum unfolded protein response | biological_process | The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation. [GOC:mah, PMID:12042763]
31 | GO:2000241 | 0.0333086393197648 | regulation of reproductive process | biological_process | Any process that modulates the frequency, rate or extent of reproductive process. [GOC:mah]
31 | GO:0006986 | 0.0360035130509698 | response to unfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:jl]
31 | GO:0034620 | 0.0360035130509698 | cellular response to unfolded protein | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:mah]
31 | GO:0035967 | 0.0360035130509698 | cellular response to topologically incorrect protein | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure. [GOC:bf]
31 | GO:0032855 | 0.0360211228170344 | positive regulation of Rac GTPase activity | biological_process | Any process that activates or increases the activity of a GTPase of the [NAME] family. [GOC:mah]
31 | GO:0032922 | 0.0360211228170344 | circadian regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression such that an expression pattern recurs with a regularity of approximately 24 hours. [GOC:mah]
31 | GO:0045493 | 0.0360211228170344 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668]
31 | GO:0046112 | 0.0360211228170344 | nucleobase biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid. [GOC:ai]
31 | GO:0046864 | 0.0360211228170344 | isoprenoid transport | biological_process | The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [GOC:ai]
31 | GO:0046865 | 0.0360211228170344 | terpenoid transport | biological_process | The directed movement of terpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Terpenoids are a class of compounds characterized by an isoprenoid chemical structure and include derivatives with various functional groups. [GOC:ai]
31 | GO:0048587 | 0.0360211228170344 | regulation of short-day photoperiodism, flowering | biological_process | Any process that modulates the frequency, rate or extent of short-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
31 | GO:0051570 | 0.0360211228170344 | regulation of histone H3-K9 methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
31 | GO:0080168 | 0.0360211228170344 | abscisic acid transport | biological_process | The directed movement of abscisic acid into, out of, within or between cells by means of some external agent such as a transporter or pore. [PMID:20133881]
31 | GO:0010393 | 0.0392453070824762 | galacturonan metabolic process | biological_process | The chemical reactions and pathways involving galacturonan, a pectin polymer containing a backbone of alpha-(1->4)-linked D-galacturonic acid residues. [GOC:tair_curators]
31 | GO:0045488 | 0.0392453070824762 | pectin metabolic process | biological_process | The chemical reactions and pathways involving pectin, a group of galacturonic acid-containing, water-soluble colloidal carbohydrates of high molecular weight and of net negative charge. [GOC:tair_curators]
31 | GO:0006984 | 0.0407240534908619 | ER-nucleus signaling pathway | biological_process | Any series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation. [GOC:mah]
31 | GO:0007015 | 0.0407240534908619 | actin filament organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. [GOC:mah]
31 | GO:0006144 | 0.047741230746634 | purine nucleobase metabolic process | biological_process | The chemical reactions and pathways involving purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [CHEBI:26386, GOC:go_curators]
31 | GO:0007266 | 0.047741230746634 | Rho protein signal transduction | biological_process | A series of molecular signals within the cell that are mediated by a member of the [NAME] family of proteins switching to a GTP-bound active state. [GOC:bf]
31 | GO:0010541 | 0.047741230746634 | acropetal auxin transport | biological_process | The unidirectional movement of auxin from the base towards the apex of an organ, including the shoot, leaf, primary root, or lateral root. [PMID:10677441]
31 | GO:0032319 | 0.047741230746634 | regulation of Rho GTPase activity | biological_process | Any process that modulates the activity of a GTPase of the [NAME] family. [GOC:mah]
31 | GO:0032321 | 0.047741230746634 | positive regulation of Rho GTPase activity | biological_process | Any process that activates or increases the activity of a GTPase of the [NAME] family. [GOC:mah]
31 | GO:0035023 | 0.047741230746634 | regulation of Rho protein signal transduction | biological_process | Any process that modulates the frequency, rate or extent of Rho protein signal transduction. [GOC:bf]
31 | GO:0043101 | 0.047741230746634 | purine-containing compound salvage | biological_process | Any process that generates a purine-containing compound, any nucleobase, nucleoside, nucleotide or nucleic acid that contains a purine base, from derivatives of them without de novo synthesis. [CHEBI:26401, GOC:jl]
31 | GO:0051568 | 0.047741230746634 | histone H3-K4 methylation | biological_process | The modification of histone H3 by addition of a methyl group to lysine at position 4 of the histone. [GOC:ai]
32 | GO:0030244 | 3.415915091722e-05 | cellulose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:[PHONE]]
32 | GO:0048193 | 0.00583011136465443 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
32 | GO:0043248 | 0.00630795242274149 | proteasome assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active proteasome complex. [GOC:go_curators, PMID:10872471]
32 | GO:0051788 | 0.00630795242274149 | response to misfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus. [GOC:go_curators]
32 | GO:0006085 | 0.0069042975231928 | acetyl-CoA biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated. [GOC:go_curators]
32 | GO:0006897 | 0.00854999580313464 | endocytosis | biological_process | A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. [GOC:mah, ISBN:[PHONE], ISBN:[PHONE]]
32 | GO:0008652 | 0.00898205261348109 | cellular amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:[PHONE]]
32 | GO:0006499 | 0.00941739279303377 | N-terminal protein myristoylation | biological_process | The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. [GOC:mah]
32 | GO:0009226 | 0.0103527786722607 | nucleotide-sugar biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:[PHONE]]
32 | GO:0046835 | 0.0123078870200044 | carbohydrate phosphorylation | biological_process | The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y. [ISBN:[PHONE]]
32 | GO:0051603 | 0.0126592092692752 | proteolysis involved in cellular protein catabolic process | biological_process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb]
32 | GO:0006409 | 0.0143907898944773 | tRNA export from nucleus | biological_process | The directed movement of tRNA from the nucleus to the cytoplasm. [GOC:ma]
32 | GO:0006903 | 0.0143907898944773 | vesicle targeting | biological_process | The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo. [GOC:mah, PMID:17335816]
32 | GO:0009270 | 0.0143907898944773 | response to humidity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a humidity stimulus, moisture in the atmosphere. [GOC:jl]
32 | GO:0010186 | 0.0143907898944773 | positive regulation of cellular defense response | biological_process | Any process that activates or increases the frequency, rate or extent of cellular defense response. [GOC:sm]
32 | GO:0018196 | 0.0143907898944773 | peptidyl-asparagine modification | biological_process | The modification of peptidyl-asparagine. [GOC:go_curators]
32 | GO:0018279 | 0.0143907898944773 | protein N-linked glycosylation via asparagine | biological_process | The glycosylation of protein via the N4 atom of peptidyl-asparagine forming N4-glycosyl-L-asparagine; the most common form is N-acetylglucosaminyl asparagine; N-acetylgalactosaminyl asparagine and N4 glucosyl asparagine also occur. This modification typically occurs in extracellular peptides with an N-X-(ST) motif. Partial modification has been observed to occur with cysteine, rather than serine or threonine, in the third position; secondary structure features are important, and proline in the second or fourth positions inhibits modification. [GOC:jsg, RESID:AA0151, RESID:AA0420, RESID:AA0421]
32 | GO:0032509 | 0.0143907898944773 | endosome transport via multivesicular body sorting pathway | biological_process | The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. [GOC:mah, PMID:12461556, PMID:16689637]
32 | GO:0035281 | 0.0143907898944773 | pre-miRNA export from nucleus | biological_process | Transport of pre-microRNAs (pre-miRNAs) from the nucleus to the cytoplasm. Pre-miRNAs are a ~60-70 nucleotide stem loop intermediate in miRNA production, produced by the nuclear cleavage of a primary miRNA (pri-mRNA) transcript. Pre-miRNAs are transported from the nucleus to the cytoplasm where further cleavage occurs to produce a mature miRNA product. [GOC:sl, PMID:14744438]
32 | GO:0042352 | 0.0143907898944773 | GDP-L-fucose salvage | biological_process | The formation of GDP-L-fucose from L-fucose, without de novo synthesis. L-fucose is phosphorylated by fucokinase and then converted by fucose-1-phosphate guanylyltransferase (EC:2.7.7.30). [GOC:ma]
32 | GO:0043173 | 0.0143907898944773 | nucleotide salvage | biological_process | Any process which produces a nucleotide, a compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety, from derivatives of it without de novo synthesis. [GOC:jl]
32 | GO:0048199 | 0.0143907898944773 | vesicle targeting, to, from or within Golgi | biological_process | The process in which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
32 | GO:0048209 | 0.0143907898944773 | regulation of vesicle targeting, to, from or within Golgi | biological_process | Any process that modulates the frequency, rate, or destination of vesicle-mediated transport to, from or within the Golgi apparatus. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
32 | GO:0051031 | 0.0143907898944773 | tRNA transport | biological_process | The directed movement of tRNA, transfer ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
32 | GO:0051648 | 0.0143907898944773 | [NAME] | biological_process | Any process in which a vesicle or vesicles are transported to, and/or maintained in, a specific location. [GOC:ai]
32 | GO:0051650 | 0.0143907898944773 | establishment of vesicle localization | biological_process | The directed movement of a vesicle to a specific location. [GOC:ai]
32 | GO:0060627 | 0.0143907898944773 | regulation of vesicle-mediated transport | biological_process | Any process that modulates the rate, frequency, or extent of vesicle-mediated transport, the directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell. [GOC:dph, GOC:tb]
32 | GO:0071985 | 0.0143907898944773 | multivesicular body sorting pathway | biological_process | A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. [GOC:mah, PMID:17603537]
32 | GO:0007020 | 0.016909001357102 | microtubule nucleation | biological_process | The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. [NAME] nucleation usually occurs from a specific site within a cell. [ISBN:[PHONE]]
32 | GO:0044257 | 0.0191300109711071 | cellular protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:jl]
32 | GO:0007010 | 0.0197531518220557 | cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah]
32 | GO:0043094 | 0.0205416801999423 | cellular metabolic compound salvage | biological_process | Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells. [GOC:mlg]
32 | GO:0030163 | 0.0228322863713186 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah]
32 | GO:0044265 | 0.0268148263706909 | cellular macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a macromolecule, any large molecule including proteins, nucleic acids and carbohydrates, as carried out by individual cells. [CHEBI:33694, GOC:jl]
32 | GO:0009742 | 0.0269834533697637 | brassinosteroid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of brassinosteroid. [GOC:sm]
32 | GO:0043401 | 0.0269834533697637 | steroid hormone mediated signaling pathway | biological_process | A series of molecular signals mediated by a steroid hormone binding to a receptor. [PMID:12606724]
32 | GO:0048545 | 0.0269834533697637 | response to steroid hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus. [GOC:go_curators]
32 | GO:0071367 | 0.0269834533697637 | cellular response to brassinosteroid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a brassinosteroid stimulus. [GOC:mah]
32 | GO:0071383 | 0.0269834533697637 | cellular response to steroid hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a steroid hormone stimulus. [GOC:mah]
32 | GO:0001736 | 0.0285767532576268 | establishment of planar polarity | biological_process | Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates. [GOC:dph]
32 | GO:0001738 | 0.0285767532576268 | morphogenesis of a polarized epithelium | biological_process | The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis. [GOC:dph]
32 | GO:0002009 | 0.0285767532576268 | morphogenesis of an epithelium | biological_process | The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube. [GOC:dph, GOC:jl, GOC:tb, ISBN:[PHONE]]
32 | GO:0006968 | 0.0285767532576268 | cellular defense response | biological_process | A defense response that is mediated by cells. [GOC:ebc]
32 | GO:0007164 | 0.0285767532576268 | establishment of tissue polarity | biological_process | Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates. [GOC:jid]
32 | GO:0010185 | 0.0285767532576268 | regulation of cellular defense response | biological_process | Any process that modulates the frequency, rate or extent of cellular defense response. [GOC:sm]
32 | GO:0048729 | 0.0285767532576268 | tissue morphogenesis | biological_process | The process in which the anatomical structures of a tissue are generated and organized. [GOC:dph, GOC:jid]
32 | GO:0051125 | 0.0285767532576268 | regulation of actin nucleation | biological_process | Any process that modulates the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. [GOC:ai]
32 | GO:0051127 | 0.0285767532576268 | positive regulation of actin nucleation | biological_process | Any process that activates or increases the frequency, rate or extent of actin nucleation, the initial step in the formation of an actin filament in which actin monomers combine to form a new filament. [GOC:ai]
32 | GO:0003002 | 0.0348512556015436 | regionalization | biological_process | The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. [GOC:dph, GOC:isa_complete]
32 | GO:0006511 | 0.0377269569723634 | ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators]
32 | GO:0019941 | 0.0388053717093454 | modification-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent modification of the target protein. [GOC:go_curators]
32 | GO:0043632 | 0.0388053717093454 | modification-dependent macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a macromolecule, initiated by covalent modification of the target molecule. [GOC:jl]
32 | GO:0000105 | 0.0425607731243661 | histidine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. [GOC:go_curators]
32 | GO:0006491 | 0.0425607731243661 | N-glycan processing | biological_process | The conversion of N-linked glycan (N = nitrogen) structures from the initially transferred oligosaccharide to a mature form, by the actions of glycosidases and glycosyltransferases. The early processing steps are conserved and play roles in glycoprotein folding and trafficking. [ISBN:[PHONE], PMID:12736198]
32 | GO:0006547 | 0.0425607731243661 | histidine metabolic process | biological_process | The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. [GOC:go_curators]
32 | GO:0009075 | 0.0425607731243661 | histidine family amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the histidine family. [GOC:ai]
32 | GO:0009076 | 0.0425607731243661 | histidine family amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the histidine family. [GOC:ai]
32 | GO:0009915 | 0.0425607731243661 | [NAME] loading | biological_process | The process of loading sucrose into the sieve tube or companion cell of the phloem for long distance transport from source to sink. [GOC:sm]
32 | GO:0010158 | 0.0425607731243661 | abaxial cell fate specification | biological_process | The process in which a cell becomes capable of differentiating autonomously into an abaxial cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. [GOC:mg]
32 | GO:0010188 | 0.0425607731243661 | response to microbial phytotoxin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a microbial phytotoxin stimulus. A microbial phytotoxin is a chemical substance produced by microbes which is toxic to plants. [GOC:sm]
32 | GO:0032386 | 0.0425607731243661 | regulation of intracellular transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of substances within cells. [GOC:mah]
32 | GO:0042350 | 0.0425607731243661 | GDP-L-fucose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate. [GOC:jl]
32 | GO:0045793 | 0.0425607731243661 | positive regulation of cell size | biological_process | Any process that increases cell size. [GOC:go_curators]
32 | GO:0046368 | 0.0425607731243661 | GDP-L-fucose metabolic process | biological_process | The chemical reactions and pathways involving GDP-L-fucose, a substance composed of L-fucose in glycosidic linkage with guanosine diphosphate. [GOC:ai]
32 | GO:0052803 | 0.0425607731243661 | imidazole-containing compound metabolic process | biological_process | The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton. [CHEBI:24780]
32 | GO:0060341 | 0.0425607731243661 | regulation of cellular localization | biological_process | Any process that modulates the frequency, rate or extent of a process in which a cell, a substance, or a cellular entity is transported to, or maintained in a specific location within or in the membrane of a cell. [GOC:dph, GOC:tb]
32 | GO:0009225 | 0.0426046671229819 | nucleotide-sugar metabolic process | biological_process | The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:[PHONE]]
33 | GO:0052033 | 0.000586913676384651 | pathogen-associated molecular pattern dependent induction by symbiont of host innate immune response | biological_process | Any process that involves recognition of a pathogen-associated molecular pattern, and by which an organism activates, maintains or increases the frequency, rate or extent of the innate immune response of the host organism; the innate immune response is the host's first line of defense against infection. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mah]
33 | GO:0034976 | 0.0016525210912338 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
33 | GO:0009245 | 0.0243044451552761 | lipid A biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of six fatty acyl chains linked to two glucosamine residues. [ISBN:[PHONE]]
33 | GO:0010159 | 0.0243044451552761 | specification of organ position | biological_process | The regionalization process in which information that determines the correct position at which organ primordia are formed is generated and perceived resulting in correct positioning of the new organ. [PMID:9611175]
33 | GO:0018131 | 0.0243044451552761 | oxazole or thiazole biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of oxazole or thiazole, five-membered heterocyclic ring structures containing an oxygen and a sulfur, respectively, in the 1-position and a nitrogen in the 3-position. [CHEBI:35790, CHEBI:48901, GOC:curators]
33 | GO:0032928 | 0.0243044451552761 | regulation of superoxide anion generation | biological_process | Any process that modulates the frequency, rate or extent of enzymatic generation of superoxide by a cell. [GOC:mah]
33 | GO:0046484 | 0.0243044451552761 | oxazole or [NAME] process | biological_process | The chemical reactions and pathways involving oxazole or thiazole, five-membered heterocyclic ring structures containing an oxygen and a sulfur, respectively, in the 1-position and a nitrogen in the 3-position. [CHEBI:35790, CHEBI:48901, GOC:curators]
33 | GO:0046493 | 0.0243044451552761 | lipid A metabolic process | biological_process | The chemical reactions and pathways involving lipid A, the glycolipid group of bacterial lipopolysaccharides, consisting of six fatty acyl chains linked to two glucosamine residues. [ISBN:[PHONE]]
33 | GO:0046839 | 0.0243044451552761 | phospholipid dephosphorylation | biological_process | The process of removing one or more phosphate groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents. [ISBN:[PHONE]]
33 | GO:0046856 | 0.0243044451552761 | phosphatidylinositol dephosphorylation | biological_process | The process of removing one or more phosphate groups from a phosphatidylinositol. [ISBN:[PHONE]]
33 | GO:0051457 | 0.0243044451552761 | maintenance of protein location in nucleus | biological_process | Any process in which a protein is maintained in the nucleus and prevented from moving elsewhere. These include sequestration within the nucleus, protein stabilization to prevent transport elsewhere and the active retrieval of proteins that escape the nucleus. [GOC:ai]
33 | GO:0070919 | 0.0243044451552761 | production of siRNA involved in chromatin silencing by small RNA | biological_process | Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of chromatin silencing by small RNA. [GOC:mah, PMID:19239886]
33 | GO:1901269 | 0.0243044451552761 | [NAME] process | biological_process | The chemical reactions and pathways involving lipooligosaccharide. [GOC:TermGenie, GOC:yaf, UniPathway:UPA00501]
33 | GO:1901271 | 0.0243044451552761 | lipooligosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipooligosaccharide. [GOC:TermGenie, GOC:yaf, UniPathway:UPA00501]
33 | GO:0045037 | 0.0279514090304678 | protein import into chloroplast stroma | biological_process | The import of proteins into the chloroplast stroma. Import depends on ATP hydrolysis catalyzed by stromal chaperones. Chloroplast stromal proteins, such as the S subunit of rubisco, have a N-terminal stromal-import sequence of about 44 amino acids which is cleaved from the protein precursor after import. [ISBN:[PHONE]]
33 | GO:0032940 | 0.0330145769833151 | secretion by cell | biological_process | The controlled release of a substance by a cell. [GOC:mah]
33 | GO:0046903 | 0.0330145769833151 | secretion | biological_process | The controlled release of a substance by a cell or a tissue. [GOC:ai]
33 | GO:0034614 | 0.0368673279116747 | cellular response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mah]
33 | GO:0044723 | 0.0373595538542263 | single-organism carbohydrate metabolic process | biological_process | The chemical reactions and pathways involving carbohydrates, occurring within a single organism. [GOC:jl]
33 | GO:0080167 | 0.0391492470292241 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
33 | GO:0034599 | 0.0439506655721332 | cellular response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah]
33 | GO:0006096 | 0.0471657125736594 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
33 | GO:0006101 | 0.0480219766339859 | citrate metabolic process | biological_process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. [ISBN:[PHONE]]
33 | GO:0009107 | 0.0480219766339859 | lipoate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. [GOC:ai, ISBN:[PHONE]]
33 | GO:0009228 | 0.0480219766339859 | thiamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. [CHEBI:18385, GOC:jl, ISBN:[PHONE]]
33 | GO:0010163 | 0.0480219766339859 | high-affinity potassium ion import | biological_process | The directed, energized, high affinity movement of potassium ions into a cell or organelle, driven by cation symport with hydrogen or sodium ions. [PMID:8893537]
33 | GO:0010450 | 0.0480219766339859 | inflorescence meristem growth | biological_process | The increase in size or mass of an inflorescence meristem, a population of undifferentiated cells in a plant shoot which produces small leaves and then floral meristems, which will give rise to flowers. [GOC:tb]
33 | GO:0042554 | 0.0480219766339859 | superoxide anion generation | biological_process | The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways. [GOC:jl, PMID:12359750]
33 | GO:0042724 | 0.0480219766339859 | thiamine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), and related compounds. [CHEBI:26948, GOC:jl]
33 | GO:0051365 | 0.0480219766339859 | cellular response to potassium ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions. [GOC:sm]
33 | GO:0070542 | 0.0480219766339859 | response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [CHEBI:35366, GOC:lp]
33 | GO:0071398 | 0.0480219766339859 | cellular response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [GOC:mah]
33 | GO:0072595 | 0.0480219766339859 | maintenance of protein localization in organelle | biological_process | Any process in which a protein is maintained in a specific location a specific location on or in an organelle, and is prevented from moving elsewhere. Encompasses establishment of localization in the membrane or lumen of a membrane-bounded organelle. [GOC:mah]
34 | GO:0009616 | 0.000545046092882323 | virus induced gene silencing | biological_process | Specific posttranscriptional gene inactivation ('silencing') both of viral gene(s), and host gene(s) homologous to the viral genes. This silencing is triggered by viral infection, and occurs through a specific decrease in the level of mRNA of both host and viral genes. [GOC:jl]
34 | GO:0006096 | 0.000939217613127209 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
34 | GO:0007030 | 0.00132931719558344 | Golgi organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. [GOC:dph, GOC:jl, GOC:mah]
34 | GO:0046686 | 0.00136529926464783 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
34 | GO:0030244 | 0.00140354101502935 | cellulose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:[PHONE]]
34 | GO:0007021 | 0.00237159331957196 | tubulin complex assembly | biological_process | The aggregation and bonding together of alpha- and beta-tubulin to form a tubulin heterodimer. [GOC:mah]
34 | GO:0010289 | 0.00237159331957196 | homogalacturonan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the pectidic homogalacturonan, characterized by a backbone of (1->4)-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3. [PMID:12913136, PMID:16540543]
34 | GO:0048193 | 0.00368848282993292 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
34 | GO:0015867 | 0.00465437194287763 | ATP transport | biological_process | The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
34 | GO:0010267 | 0.00576688243551359 | production of ta-siRNAs involved in RNA interference | biological_process | Cleavage of double-stranded RNA to form trans-acting small interfering RNA molecules (siRNAs) of 21-23 nucleotides. ta-siRNAs arise from PolII genes and function like miRNAs to guide cleavage of target mRNAs. [GOC:tb, PMID:16129836]
34 | GO:0010050 | 0.00580917009374539 | vegetative phase change | biological_process | Any process involved in the transition of a plant from a juvenile phase of vegetative development to an adult phase of vegetative development. [GOC:tb]
34 | GO:0018208 | 0.00667049316619796 | peptidyl-proline modification | biological_process | The modification of peptidyl-proline. [GOC:go_curators]
34 | GO:0007267 | 0.00974967447003479 | cell-cell signaling | biological_process | Any process that mediates the transfer of information from one cell to another. [GOC:mah]
34 | GO:0043574 | 0.0112347344358819 | peroxisomal transport | biological_process | Transport of substances into, out of or within a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:jl]
34 | GO:0035196 | 0.0132844405269931 | production of miRNAs involved in gene silencing by miRNA | biological_process | Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein. [GOC:dph, GOC:tb, PMID:15066275, PMID:15066283]
34 | GO:0016049 | 0.0146485410951418 | cell growth | biological_process | The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. [GOC:ai]
34 | GO:0035195 | 0.0194766222891382 | gene silencing by miRNA | biological_process | Downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [PMID:14744438, PMID:15066275, PMID:15066283]
34 | GO:0006498 | 0.0239740630290303 | N-terminal protein lipidation | biological_process | The covalent attachment of a lipid group to the amino terminus of a protein. [GOC:jl]
34 | GO:0006499 | 0.0239740630290303 | N-terminal protein myristoylation | biological_process | The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. [GOC:mah]
34 | GO:0018377 | 0.0239740630290303 | protein myristoylation | biological_process | The covalent attachment of a myristoyl group to a protein. [GOC:ai]
34 | GO:0000413 | 0.0264197715385256 | protein peptidyl-prolyl isomerization | biological_process | The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570]
34 | GO:0009060 | 0.0264197715385256 | aerobic respiration | biological_process | The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:jl, ISBN:[PHONE]]
34 | GO:0040007 | 0.0264639988133124 | growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell. [GOC:bf, GOC:ma]
34 | GO:0006497 | 0.0273160379124211 | protein lipidation | biological_process | The covalent attachment of lipid groups to an amino acid in a protein. [GOC:jl]
34 | GO:0031365 | 0.0273160379124211 | N-terminal protein amino acid modification | biological_process | The alteration of the N-terminal amino acid residue in a protein. [GOC:mah]
34 | GO:0042157 | 0.0273160379124211 | [NAME] process | biological_process | The chemical reactions and pathways involving any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. [ISBN:[PHONE]]
34 | GO:0042158 | 0.0273160379124211 | lipoprotein biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any conjugated, water-soluble protein in which the nonprotein group consists of a lipid or lipids. [ISBN:[PHONE]]
34 | GO:0006013 | 0.0284617844581335 | mannose metabolic process | biological_process | The chemical reactions and pathways involving mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. The D-(+)-form is widely distributed in mannans and hemicelluloses and is of major importance in the core oligosaccharide of N-linked oligosaccharides of glycoproteins. [ISBN:[PHONE]]
34 | GO:0006517 | 0.0284617844581335 | protein deglycosylation | biological_process | The removal of sugar residues from a glycosylated protein. [GOC:mah]
34 | GO:0008535 | 0.0284617844581335 | respiratory chain complex IV assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form respiratory chain complex IV (also known as cytochrome c oxidase), the terminal member of the respiratory chain of the mitochondrion and some aerobic bacteria. Cytochrome c oxidases are multi-subunit enzymes containing from 13 subunits in the mammalian mitochondrial form to 3-4 subunits in the bacterial forms. [GOC:jl, http://www.med.wright.edu/bmb/lp/lplab.htm]
34 | GO:0009747 | 0.0284617844581335 | hexokinase-dependent signaling | biological_process | A series of molecular signals mediated by hexose and dependent on the detection of hexokinase. [GOC:mah, GOC:sm]
34 | GO:0010353 | 0.0284617844581335 | response to trehalose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose stimulus. [PMID:17031512]
34 | GO:0010896 | 0.0284617844581335 | regulation of triglyceride catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of triglyceride. [GOC:rn, GOC:tb]
34 | GO:0019307 | 0.0284617844581335 | mannose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannose, the aldohexose manno-hexose, the C-2 epimer of glucose. [GOC:ai]
34 | GO:0032011 | 0.0284617844581335 | ARF protein signal transduction | biological_process | A series of molecular signals within the cell that are mediated by a member of the ARF family of proteins switching to a GTP-bound active state. [GOC:mah]
34 | GO:0032012 | 0.0284617844581335 | regulation of ARF protein signal transduction | biological_process | Any process that modulates the frequency, rate or extent of ARF protein signal transduction. [GOC:mah]
34 | GO:0032312 | 0.0284617844581335 | regulation of ARF GTPase activity | biological_process | Any process that modulates the activity of the GTPase ARF. [GOC:mah]
34 | GO:0032850 | 0.0284617844581335 | positive regulation of ARF GTPase activity | biological_process | Any process that activates or increases the activity of the GTPase ARF. [GOC:mah]
34 | GO:0032856 | 0.0284617844581335 | activation of [NAME] GTPase activity | biological_process | Any process that initiates the activity of an inactive GTPase of the [NAME] superfamily through the replacement of GDP by GTP. [GOC:dph, GOC:mah, GOC:tb]
34 | GO:0032857 | 0.0284617844581335 | activation of ARF GTPase activity | biological_process | Any process that initiates the activity of the inactive enzyme ARF GTPase through the replacement of GDP by GTP. [GOC:dph, GOC:mah, GOC:tb]
34 | GO:0033587 | 0.0284617844581335 | shikimate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. [CHEBI:36208, GOC:mah]
34 | GO:0034196 | 0.0284617844581335 | acylglycerol transport | biological_process | The directed movement of an acylglycerol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An acylglycerol is any mono-, di- or triester of glycerol with (one or more) fatty acids. [GOC:BHF, GOC:rl]
34 | [NAME] | 0.0284617844581335 | retrograde transport, endosome to Golgi | biological_process | The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. [GOC:jl, PMID:10873832, PMID:16936697]
34 | GO:0045116 | 0.0284617844581335 | protein neddylation | biological_process | Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein. [PMID:11698580]
34 | GO:0046719 | 0.0284617844581335 | regulation of viral protein levels in host cell | biological_process | Any virus-mediated process that modulates the levels of viral proteins in a cell. [GOC:ai]
34 | GO:0051211 | 0.0284617844581335 | anisotropic cell growth | biological_process | The process in which a cell irreversibly increases in size in one or more axes, where the growth rate varies according to the direction of growth. Growth may be limited to a particular axis, axes, or to particular locations on the surface of the cell. [GOC:ai]
34 | GO:0080121 | 0.0284617844581335 | AMP transport | biological_process | The directed movement of AMP, adenosine monophosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [PMID:18923018]
34 | GO:0090207 | 0.0284617844581335 | regulation of triglyceride metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol. [GOC:dph, GOC:sl, GOC:tb]
34 | GO:1901965 | 0.0284617844581335 | endoplasmic reticulum to chloroplast transport | biological_process | The directed movement of substances from endoplasmic reticulum to chloroplast. [GOC:TermGenie, PMID:18689504]
34 | GO:1990052 | 0.0284617844581335 | ER to chloroplast lipid transport | biological_process | The directed movement of a lipid from the endoplasmic reticulum (ER) to the chloroplast. [PMID:18689504]
34 | GO:0006833 | 0.0318788800603593 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
34 | [NAME] | 0.0318788800603593 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
34 | GO:0007033 | 0.036462427779268 | vacuole organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole. [GOC:mah]
34 | [NAME] | 0.0374234708671837 | regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process | Any process that modulates the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. [GOC:go_curators, GOC:pr]
34 | [NAME] | 0.0374234708671837 | regulation of DNA endoreduplication | biological_process | Any process that modulates the frequency, rate or extent of DNA endoreduplication. [GOC:mah]
34 | GO:0045736 | 0.0374234708671837 | negative regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. [GOC:go_curators, GOC:pr]
34 | GO:0090329 | 0.0374234708671837 | regulation of DNA-dependent DNA replication | biological_process | Any process that modulates the rate, frequency, or extent of DNA-dependent DNA replication, the process in which new strands of DNA are synthesized, using parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands. [GOC:dph, GOC:tb]
34 | GO:0006623 | 0.0381971274565461 | protein targeting to vacuole | biological_process | The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators]
34 | GO:0072665 | 0.0381971274565461 | protein localization to vacuole | biological_process | A process in which a protein is transported to, or maintained at, a location in a vacuole. [GOC:ecd]
34 | GO:0072666 | 0.0381971274565461 | establishment of protein localization to vacuole | biological_process | The directed movement of a protein to a specific location in a vacuole. [GOC:mah]
34 | GO:0046777 | 0.0390632510947422 | protein autophosphorylation | biological_process | The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. [ISBN:[PHONE]]
34 | GO:0007034 | 0.0409385498918824 | vacuolar transport | biological_process | The directed movement of substances into, out of or within a vacuole. [GOC:ai]
34 | GO:0016558 | 0.0409385498918824 | protein import into peroxisome matrix | biological_process | The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:[PHONE], PMID:11687502, PMID:11988772]
34 | GO:0006625 | 0.0437890360492373 | protein targeting to peroxisome | biological_process | The process of directing proteins towards the peroxisome, usually using signals contained within the protein. [GOC:ai]
34 | GO:0072662 | 0.0437890360492373 | protein localization to peroxisome | biological_process | A process in which a protein is transported to, or maintained at, a location in a peroxisome. [GOC:ecd]
34 | GO:0072663 | 0.0437890360492373 | establishment of protein localization to peroxisome | biological_process | The directed movement of a protein to a specific location in a peroxisome. [GOC:mah]
35 | [NAME] | 5.07323869034619e-05 | [NAME] nucleation | biological_process | The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament. [ISBN:[PHONE]]
35 | GO:0010090 | 0.000258390445896279 | trichome morphogenesis | biological_process | The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
35 | GO:0007155 | 0.000310146004184103 | cell adhesion | biological_process | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. [GOC:hb, GOC:pf]
35 | GO:0048765 | 0.000500036141250519 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
35 | GO:0007154 | 0.00143112641719318 | cell communication | biological_process | Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. [GOC:mah]
35 | GO:0071555 | 0.0024876080883298 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
35 | GO:0030244 | 0.00280578921638261 | cellulose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:[PHONE]]
35 | GO:0009605 | 0.00415346229021605 | response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:hb]
35 | GO:0010072 | 0.00425209817132608 | primary shoot apical meristem specification | biological_process | The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers. [GOC:ascb_2009, GOC:dph, GOC:tair_curators, GOC:tb]
35 | GO:0046777 | 0.00540275203414026 | protein autophosphorylation | biological_process | The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. [ISBN:[PHONE]]
35 | GO:0040007 | 0.00558622373650791 | growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell. [GOC:bf, GOC:ma]
35 | GO:0009798 | 0.00581612383068991 | axis specification | biological_process | The establishment, maintenance and elaboration of a pattern along a line or around a point. [GOC:dph, GOC:go_curators, GOC:isa_complete]
35 | GO:0016192 | 0.00604671231784209 | vesicle-mediated transport | biological_process | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000]
35 | GO:0003002 | 0.0066965936061076 | regionalization | biological_process | The pattern specification process that results in the subdivision of an axis or axes in space to define an area or volume in which specific patterns of cell differentiation will take place or in which cells interpret a specific environment. [GOC:dph, GOC:isa_complete]
35 | GO:0010119 | 0.0107055992266929 | regulation of stomatal movement | biological_process | Any process that modulates the frequency, rate or extent of stomatal movement. [GOC:sm]
35 | GO:0009887 | 0.01109508205753 | organ morphogenesis | biological_process | Morphogenesis of an organ. An organ is defined as a tissue or set of tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions. [GOC:dgh, GOC:go_curators, ISBN:[PHONE], ISBN:[PHONE]]
35 | GO:0010431 | 0.0115468636649726 | seed maturation | biological_process | A process in seed development that occurs after embryogenesis by which a quiescent state is established in a seed. Seed maturation is characterized by storage compound accumulation, acquisition of desiccation tolerance, growth arrest and the entry into a dormancy period of variable length that is broken upon germination. [PMID:16096971]
35 | GO:0006863 | 0.0116439875170744 | purine nucleobase transport | biological_process | The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:26386, ISBN:[PHONE]]
35 | GO:0048609 | 0.0118550690497422 | multicellular organismal reproductive process | biological_process | The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. [GOC:dph, GOC:jid, GOC:tb]
35 | GO:0032504 | 0.0137074442869975 | multicellular organism reproduction | biological_process | The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. [GOC:isa_complete, GOC:jid]
35 | GO:0015851 | 0.013991985388302 | nucleobase transport | biological_process | The directed movement of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [ISBN:[PHONE]]
35 | GO:0048589 | 0.0142426942070809 | developmental growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. [GOC:go_curators]
35 | GO:0010498 | 0.0159707063973846 | proteasomal protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome. [GOC:tb]
35 | GO:0033044 | 0.0162749041082798 | regulation of chromosome organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a chromosome. [GOC:mah]
35 | GO:0044702 | 0.0165054522393289 | single organism reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals, involving a single organism. [GOC:jl]
35 | GO:0009943 | 0.0173491692905686 | adaxial/abaxial axis specification | biological_process | The establishment, maintenance and elaboration of the adaxial / abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
35 | GO:0009944 | 0.0173491692905686 | polarity specification of adaxial/abaxial axis | biological_process | The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
35 | GO:0031668 | 0.0178153325239708 | cellular response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:mah]
35 | GO:0044700 | 0.0185895698476073 | single organism signaling | biological_process | A signaling process occurring within a single organism. [GOC:jl]
35 | GO:0071496 | 0.0187929656243378 | cellular response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:mah]
35 | GO:0090351 | 0.0187929656243378 | seedling development | biological_process | The process whose specific outcome is the progression of the seedling over time, beginning with seed germination and ending when the first adult leaves emerge. [GOC:tb, PO:0007131]
35 | GO:0023052 | 0.0189768725956932 | signaling | biological_process | The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling]
35 | GO:0007165 | 0.0192386200900017 | signal transduction | biological_process | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]
35 | GO:0065001 | 0.0193344762245411 | specification of axis polarity | biological_process | The pattern specification process in which the polarity of a body or organ axis is established and maintained. [GOC:mah]
35 | GO:0048572 | 0.0199557503923481 | short-day photoperiodism | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that falls short of a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 hours minus the critical day length. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
35 | GO:0048575 | 0.0199557503923481 | short-day photoperiodism, flowering | biological_process | A change from vegetative to reproductive phase as a result of detection of, or exposure to, a period of light that falls short of the critical day length. The critical day length varies between species. Although the term is short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 minus the critical day length. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
35 | GO:0090333 | 0.0199557503923481 | regulation of stomatal closure | biological_process | Any process that modulates the rate, frequency, or extent of stomatal closure. Stomatal closure is the process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. [GOC:tb]
35 | GO:0009991 | 0.0230892711891892 | response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:go_curators]
35 | GO:0009955 | 0.0237120539016913 | adaxial/abaxial pattern specification | biological_process | The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:isa_complete, GOC:tb]
35 | GO:0009933 | 0.0242632982556045 | meristem structural organization | biological_process | Organization of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm, ISBN:[PHONE]]
35 | GO:0048532 | 0.0242632982556045 | anatomical structure arrangement | biological_process | The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. [GOC:go_curators]
35 | GO:0048193 | 0.0253332378143052 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
35 | GO:0009880 | 0.0258926876676092 | [NAME] specification | biological_process | The process that results in the patterns of cell differentiation that will arise in an embryo. [GOC:go_curators, ISBN:[PHONE]]
35 | GO:0031329 | 0.0258926876676092 | regulation of cellular catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. [GOC:mah]
35 | GO:0009638 | 0.0260421653887463 | phototropism | biological_process | The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. [GOC:jl, GOC:mtg_far_red, PMID:16870491]
35 | GO:0009606 | 0.0276290191995457 | tropism | biological_process | The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it. [GOC:curators, ISBN:[PHONE]]
35 | GO:0006094 | 0.0284780457775921 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
35 | GO:0051716 | 0.0290210919120296 | cellular response to stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. [GOC:bf, GOC:jl]
35 | GO:0001708 | 0.029499452583513 | cell fate specification | biological_process | The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. [GOC:go_curators]
35 | GO:0019319 | 0.0315831431072299 | hexose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
35 | GO:0009755 | 0.0317077230677069 | hormone-mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of a hormone. [GOC:sm]
35 | GO:0032879 | 0.0321975613369056 | regulation of localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location. [GOC:mah]
35 | GO:0000209 | 0.0326191237610309 | protein polyubiquitination | biological_process | Addition of multiple ubiquitin groups to a protein, forming a ubiquitin chain. [ISBN:[PHONE]]
35 | GO:0006903 | 0.0326191237610309 | vesicle targeting | biological_process | The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo. [GOC:mah, PMID:17335816]
35 | GO:0009747 | 0.0326191237610309 | hexokinase-dependent signaling | biological_process | A series of molecular signals mediated by hexose and dependent on the detection of hexokinase. [GOC:mah, GOC:sm]
35 | GO:0009953 | 0.0326191237610309 | dorsal/ventral pattern formation | biological_process | The regionalization process in which the areas along the dorsal/ventral axis are established that will lead to differences in cell differentiation. The dorsal/ventral axis is defined by a line that runs orthogonal to both the anterior/posterior and left/right axes. The dorsal end is defined by the upper or back side of an organism. The ventral end is defined by the lower or front side of an organism. [GOC:dph, GOC:go_curators, GOC:isa_complete, GOC:tb]
35 | GO:0009996 | 0.0326191237610309 | negative regulation of cell fate specification | biological_process | Any process that restricts, stops or prevents a cell from adopting a specific cell fate. [GOC:go_curators]
35 | GO:0010057 | 0.0326191237610309 | trichoblast fate specification | biological_process | The process involved in the specification of a trichoblast. [GOC:tb]
35 | GO:0010061 | 0.0326191237610309 | regulation of trichoblast fate specification | biological_process | Any process that modulates trichoblast fate specification. [GOC:tb]
35 | GO:0010062 | 0.0326191237610309 | negative regulation of trichoblast fate specification | biological_process | Any process that suppresses trichoblast fate specification. [GOC:tb]
35 | GO:0010159 | 0.0326191237610309 | specification of organ position | biological_process | The regionalization process in which information that determines the correct position at which organ primordia are formed is generated and perceived resulting in correct positioning of the new organ. [PMID:9611175]
35 | GO:0010202 | 0.0326191237610309 | response to low fluence red light stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Low fluence red light is defined in this case as short pulses of red light followed by darkness, providing a light level of 0.001-0.1 mmol/m2/sec. [GOC:mtg_far_red, GOC:sm]
35 | GO:0010353 | 0.0326191237610309 | response to trehalose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose stimulus. [PMID:17031512]
35 | GO:0010453 | 0.0326191237610309 | regulation of cell fate commitment | biological_process | Any process that modulates the frequency, rate or extent of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. [GOC:dph, GOC:tb]
35 | GO:0010454 | 0.0326191237610309 | negative regulation of cell fate commitment | biological_process | Any process that stops, prevents or reduces the frequency or rate of cell fate commitment. Cell fate commitment is the commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. [GOC:dph, GOC:tb]
35 | GO:0010896 | 0.0326191237610309 | regulation of triglyceride catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of triglyceride. [GOC:rn, GOC:tb]
35 | GO:0030497 | 0.0326191237610309 | fatty acid elongation | biological_process | The elongation of a fatty acid chain by the sequential addition of two-carbon units. [ISBN:[PHONE]]
35 | GO:0032509 | 0.0326191237610309 | endosome transport via multivesicular body sorting pathway | biological_process | The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. [GOC:mah, PMID:12461556, PMID:16689637]
35 | GO:0034389 | 0.0326191237610309 | lipid particle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a lipid particle. [GOC:dph, GOC:jl, GOC:mah, PMID:18093937, PMID:18250201]
35 | GO:0036092 | 0.0326191237610309 | phosphatidylinositol-3-phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylinositol-3-phosphate, a phosphatidylinositol monophosphate carrying the phosphate group at the 3-position. [CHEBI:26034, GOC:al, GOC:vw]
35 | [NAME] | 0.0326191237610309 | retrograde transport, endosome to Golgi | biological_process | The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport. [GOC:jl, PMID:10873832, PMID:16936697]
35 | GO:0042149 | 0.0326191237610309 | cellular response to glucose starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of glucose. [GOC:jl]
35 | GO:0042659 | 0.0326191237610309 | regulation of cell fate specification | biological_process | Any process that mediates the adoption of a specific fate by a cell. [GOC:go_curators]
35 | GO:0043044 | 0.0326191237610309 | ATP-dependent chromatin remodeling | biological_process | Dynamic structural changes to eukaryotic chromatin that require energy from the hydrolysis of ATP, ranging from local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation, mediated by ATP-dependent chromatin-remodelling factors. [GOC:jl, PMID:12042764]
35 | GO:0043971 | 0.0326191237610309 | histone H3-K18 acetylation | biological_process | The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 18 of the histone. [GOC:jl]
35 | [NAME] | 0.0326191237610309 | histone H3-K23 acetylation | biological_process | The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 23 of the histone. [GOC:jl]
35 | GO:0044154 | 0.0326191237610309 | histone H3-K14 acetylation | biological_process | The modification of histone H3 by the addition of an acetyl group to a lysine residue at position 14 of the histone. [GOC:jl, GOC:lb, PMID:17194708]
35 | GO:0045947 | 0.0326191237610309 | negative regulation of translational initiation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation. [GOC:go_curators]
35 | GO:0046473 | 0.0326191237610309 | phosphatidic acid metabolic process | biological_process | The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. [ISBN:[PHONE]]
35 | GO:0048199 | 0.0326191237610309 | vesicle targeting, to, from or within Golgi | biological_process | The process in which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
35 | GO:0048209 | 0.0326191237610309 | regulation of vesicle targeting, to, from or within Golgi | biological_process | Any process that modulates the frequency, rate, or destination of vesicle-mediated transport to, from or within the Golgi apparatus. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
35 | GO:0048262 | 0.0326191237610309 | determination of dorsal/ventral asymmetry | biological_process | Determination of asymmetry from the dorsal to the ventral side; as, the dorsoventral axis. [GOC:jid]
35 | GO:0048263 | 0.0326191237610309 | determination of dorsal identity | biological_process | Determination of the identity of part of an organism or organ where those parts are of the type that occur in the dorsal region. Identity is considered to be the aggregate of characteristics by which a structure is recognized. [GOC:jid]
35 | [NAME] | 0.0326191237610309 | establishment of petal orientation | biological_process | The process that determines the orientation of petals with reference to the central axis. [GOC:tb, PMID:10572040]
35 | GO:0048559 | 0.0326191237610309 | establishment of floral organ orientation | biological_process | The process that determines the orientation of the floral organs with reference to the central axis of the flower. [GOC:jid]
35 | GO:0048560 | 0.0326191237610309 | establishment of anatomical structure orientation | biological_process | The process that determines the orientation of an anatomical structure with reference to an axis. [GOC:jid]
35 | GO:0048561 | 0.0326191237610309 | establishment of organ orientation | biological_process | The process that determines the orientation of an organ or tissue with reference to an axis. [GOC:jid]
35 | GO:0051648 | 0.0326191237610309 | [NAME] | biological_process | Any process in which a vesicle or vesicles are transported to, and/or maintained in, a specific location. [GOC:ai]
35 | GO:0051650 | 0.0326191237610309 | establishment of vesicle localization | biological_process | The directed movement of a vesicle to a specific location. [GOC:ai]
35 | GO:0060627 | 0.0326191237610309 | regulation of vesicle-mediated transport | biological_process | Any process that modulates the rate, frequency, or extent of vesicle-mediated transport, the directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell. [GOC:dph, GOC:tb]
35 | GO:0071985 | 0.0326191237610309 | multivesicular body sorting pathway | biological_process | A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. [GOC:mah, PMID:17603537]
35 | GO:0090069 | 0.0326191237610309 | regulation of ribosome biogenesis | biological_process | Any process that modulates the rate, frequency or extent of ribosome biogenesis. Ribosome biogenesis is the cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits. [GOC:dph, GOC:tb]
35 | GO:0090207 | 0.0326191237610309 | regulation of triglyceride metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol. [GOC:dph, GOC:sl, GOC:tb]
35 | GO:0090428 | 0.0326191237610309 | perianth development | biological_process | The process whose specific outcome is the progression of the perianth over time, from its formation to the mature structure. The perianth is a collective phyllome structure composed of two or more petals, sepals, or tepals. [GOC:tb, PO:0009058]
35 | GO:1900111 | 0.0326191237610309 | positive regulation of histone H3-K9 dimethylation | biological_process | Any process that activates or increases the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
35 | GO:2000232 | 0.0326191237610309 | regulation of rRNA processing | biological_process | Any process that modulates the frequency, rate or extent of rRNA processing. [GOC:mah]
35 | GO:2000234 | 0.0326191237610309 | positive regulation of rRNA processing | biological_process | Any process that activates or increases the frequency, rate or extent of rRNA processing. [GOC:mah]
35 | GO:0051301 | 0.0328057429854284 | cell division | biological_process | The process resulting in the physical partitioning and separation of a cell into daughter cells. [GOC:go_curators]
35 | GO:0009799 | 0.0349836830713912 | specification of symmetry | biological_process | The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. [GOC:go_curators]
35 | GO:0009855 | 0.0349836830713912 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
35 | GO:0050793 | 0.035313343825063 | regulation of developmental process | biological_process | Any process that modulates the frequency, rate or extent of development, the biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote, or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:go_curators]
35 | GO:0009845 | 0.0366544806432221 | seed germination | biological_process | The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis. [PMID:8281041]
35 | GO:0035266 | 0.0366544806432221 | meristem growth | biological_process | The increase in size or mass of a meristem, a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation. [GOC:bf, ISBN:[PHONE]]
35 | GO:0006897 | 0.0401004885259494 | endocytosis | biological_process | A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a small region of the plasma membrane to form a new membrane-bounded vesicle. [GOC:mah, ISBN:[PHONE], ISBN:[PHONE]]
35 | GO:0010229 | 0.0401004885259494 | inflorescence development | biological_process | The process whose specific outcome is the progression of an inflorescence over time, from its formation to the mature structure. [GOC:tb]
35 | GO:0010324 | 0.0401004885259494 | membrane invagination | biological_process | The infolding of a membrane, resulting in formation of a vesicle. [GOC:tb]
35 | GO:0010051 | 0.040214894265743 | xylem and phloem pattern formation | biological_process | The regionalization process that gives rise to the patterning of the conducting tissues. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
35 | GO:0009894 | 0.0418169290733044 | regulation of catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of substances. [GOC:go_curators]
35 | GO:0045595 | 0.0424358662157427 | regulation of cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of cell differentiation, the process in which relatively unspecialized cells acquire specialized structural and functional features. [GOC:go_curators]
35 | GO:0046364 | 0.0442141748312816 | monosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
35 | GO:0032870 | 0.0449477757133016 | cellular response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:mah]
35 | GO:0045165 | 0.0464122537945719 | cell fate commitment | biological_process | The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. [ISBN:[PHONE]]
35 | GO:0071495 | 0.0472887328155096 | cellular response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:mah]
35 | GO:0010228 | 0.0473956671605925 | vegetative to reproductive phase transition of meristem | biological_process | The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb]
35 | GO:0006817 | 0.04797863361545 | phosphate ion transport | biological_process | The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
35 | GO:0006995 | 0.04797863361545 | cellular response to nitrogen starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. [GOC:jl]
35 | GO:0009631 | 0.04797863361545 | cold acclimation | biological_process | Any process that increases freezing tolerance of an organism in response to low, nonfreezing temperatures. [GOC:syr]
35 | GO:0009957 | 0.04797863361545 | epidermal cell fate specification | biological_process | The process in which a cell becomes capable of differentiating autonomously into an epidermal cell in an environment that is neutral with respect to the developmental pathway; upon specification, the cell fate can be reversed. [GOC:mtg_sensu, GOC:sm]
35 | GO:0090332 | 0.04797863361545 | stomatal closure | biological_process | The process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. [GOC:tb]
35 | GO:0048645 | 0.0483452758388499 | organ formation | biological_process | The process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. Organs are a natural part or structure in an animal or a plant, capable of performing some special action (termed its function), which is essential to the life or well-being of the whole. The heart and lungs are organs of animals, and the petal and leaf are organs of plants. In animals the organs are generally made up of several tissues, one of which usually predominates, and determines the principal function of the organ. [GOC:dph, GOC:jid]
36 | GO:0006623 | 0.00142811259268316 | protein targeting to vacuole | biological_process | The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators]
36 | GO:0070076 | 0.00145454965754624 | histone lysine demethylation | biological_process | The modification of a histone by the removal of a methyl group from a lysine residue. [GOC:mah]
36 | GO:0009755 | 0.0035636642704081 | hormone-mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of a hormone. [GOC:sm]
36 | GO:0019255 | 0.00425337121552116 | glucose 1-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glucose 1-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-1. [GOC:ai]
36 | GO:0032386 | 0.00425337121552116 | regulation of intracellular transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of substances within cells. [GOC:mah]
36 | GO:0048522 | 0.00554489991132955 | positive regulation of cellular process | biological_process | Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. [GOC:jid]
36 | GO:0051555 | 0.00829243204972232 | flavonol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities. [GOC:ai]
36 | GO:0043687 | 0.00993367807114943 | post-translational protein modification | biological_process | The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome. [GOC:jsg]
36 | GO:0009744 | 0.0114416831298295 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
36 | GO:0034285 | 0.0114416831298295 | response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:sart]
36 | GO:0040034 | 0.0118612791438364 | regulation of development, heterochronic | biological_process | Any process that modulates the consistent predetermined time point at which an integrated living unit or organism progresses from an initial condition to a later condition and the rate at which this time point is reached. [PMID:9442909]
36 | GO:0048585 | 0.0131702892111287 | negative regulation of response to stimulus | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
36 | GO:0009094 | 0.0134736315794179 | L-phenylalanine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid. [CHEBI:17295, GOC:go_curators, GOC:jsg, GOC:mah]
36 | GO:0010087 | 0.0140030210575236 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
36 | GO:0009411 | 0.0165084451106312 | response to UV | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:hb]
36 | GO:0009736 | 0.0182726965556095 | cytokinin mediated signaling pathway | biological_process | A series of molecular signals induced by the detection of cytokinin. [GOC:sm]
36 | GO:0071368 | 0.0182726965556095 | cellular response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:mah]
36 | GO:0002229 | 0.0197045028334481 | defense response to oomycetes | biological_process | Reactions triggered in response to the presence of oomycetes that act to protect the cell or organism. [GOC:add, PMID:16497589]
36 | GO:0031347 | 0.0199325968359602 | regulation of defense response | biological_process | Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah]
36 | GO:0031325 | 0.02162519270378 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
36 | GO:0009751 | 0.022505297338128 | response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:jl]
36 | GO:0010604 | 0.0238593564579626 | positive regulation of macromolecule metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
36 | GO:0009893 | 0.0239702311460713 | positive regulation of metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
36 | GO:0030244 | 0.0252048739846399 | cellulose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:[PHONE]]
36 | GO:0010557 | 0.0253454955609168 | positive regulation of macromolecule biosynthetic process | biological_process | Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
36 | GO:0010089 | 0.0261092820988689 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
36 | GO:0080134 | 0.0263440310619651 | regulation of response to stress | biological_process | Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
36 | GO:0002239 | 0.0268979280143174 | response to oomycetes | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an oomycetes. [GOC:add, PMID:16497589]
36 | GO:0006558 | 0.0268979280143174 | L-phenylalanine metabolic process | biological_process | The chemical reactions and pathways involving L-phenylalanine, the L-enantiomer of 2-amino-3-phenylpropanoic acid, i.e. (2S)-2-amino-3-phenylpropanoic acid. [CHEBI:17295, GOC:go_curators, GOC:jsg, GOC:mah]
36 | GO:0009095 | 0.0268979280143174 | aromatic amino acid family biosynthetic process, prephenate pathway | biological_process | The chemical reactions and pathways resulting in the formation of phenylalanine and tyrosine from other compounds, including chorismate, via the intermediate prephenate. [GOC:mah, ISBN:[PHONE]]
36 | GO:0009735 | 0.0275022793346957 | response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl]
36 | GO:0048193 | 0.0292882780478397 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
36 | GO:0031348 | 0.0297998035259365 | negative regulation of defense response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. [GOC:mah]
36 | GO:0009100 | 0.030604529622035 | [NAME] process | biological_process | The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. [GOC:go_curators, ISBN:[PHONE]]
36 | GO:0009914 | 0.0324862267380598 | hormone transport | biological_process | The directed movement of hormones into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:tb]
36 | GO:0060918 | 0.0324862267380598 | auxin transport | biological_process | The directed movement of auxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb]
36 | GO:0097306 | 0.0344239304725954 | cellular response to alcohol | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
36 | GO:0009785 | 0.034971867434566 | blue light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. [GOC:lr, GOC:sm]
36 | GO:0030522 | 0.034971867434566 | intracellular receptor signaling pathway | biological_process | Any series of molecular signals initiated by a ligand binding to an receptor located within a cell. [GOC:bf, GOC:mah]
36 | GO:0051274 | 0.035176180146769 | beta-glucan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of beta-glucans. [GOC:ai]
36 | GO:0045893 | 0.0365503840572703 | positive regulation of transcription, DNA-dependent | biological_process | Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
36 | GO:0051254 | 0.0365503840572703 | positive regulation of RNA metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
36 | GO:0010628 | 0.0379302336584907 | positive regulation of gene expression | biological_process | Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
36 | GO:0000012 | 0.0382155420532115 | single strand break repair | biological_process | The repair of single strand breaks in DNA. Repair of such breaks is mediated by the same enzyme systems as are used in base excision repair. [http://www.ultranet.com/~jkimball/BiologyPages/D/DNArepair.html]
36 | [NAME] | 0.0382155420532115 | photoreactive repair | biological_process | The repair of UV-induced T-T, C-T and C-C dimers by directly reversing the damage to restore the original pyrimidines. [GOC:elh, PMID:10915863]
36 | GO:0000966 | 0.0382155420532115 | RNA 5'-end processing | biological_process | Any process involved in forming the mature 5' end of an RNA molecule. [GOC:krc]
36 | GO:0001789 | 0.0382155420532115 | G-protein coupled receptor signaling pathway, coupled to S1P second messenger | biological_process | The series of molecular signals generated as a consequence of an adrenergic receptor binding to its physiological ligand, where the pathway proceeds with activation of sphingosine kinase and a subsequent increase in cellular levels of sphingosine-1-phosphate (S1P). [GOC:dph, GOC:signaling, PMID:14592418]
36 | GO:0006266 | 0.0382155420532115 | DNA ligation | biological_process | The re-formation of a broken phosphodiester bond in the DNA backbone, carried out by DNA ligase. [ISBN:[PHONE]]
36 | GO:0006465 | 0.0382155420532115 | signal peptide processing | biological_process | The proteolytic removal of a signal peptide from a protein during or after transport to a specific location in the cell. [GOC:mah, ISBN:[PHONE]]
36 | GO:0006892 | 0.0382155420532115 | post-Golgi vesicle-mediated transport | biological_process | The directed movement of substances from the Golgi to other parts of the cell, including organelles and the plasma membrane, mediated by small transport vesicles. [GOC:ai, GOC:mah]
36 | GO:0006896 | 0.0382155420532115 | Golgi to vacuole transport | biological_process | The directed movement of substances from the Golgi to the vacuole. [GOC:ai]
36 | GO:0006903 | 0.0382155420532115 | vesicle targeting | biological_process | The process in which vesicles are directed to specific destination membranes. Targeting involves coordinated interactions among cytoskeletal elements (microtubules or actin filaments), motor proteins, molecules at the vesicle membrane and target membrane surfaces, and vesicle cargo. [GOC:mah, PMID:17335816]
36 | GO:0007338 | 0.0382155420532115 | single fertilization | biological_process | The union of male and female gametes to form a zygote. [GOC:ems, GOC:mtg_sensu]
36 | GO:0009722 | 0.0382155420532115 | detection of cytokinin stimulus | biological_process | The series of events in which a cytokinin stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
36 | GO:0010159 | 0.0382155420532115 | specification of organ position | biological_process | The regionalization process in which information that determines the correct position at which organ primordia are formed is generated and perceived resulting in correct positioning of the new organ. [PMID:9611175]
36 | GO:0010253 | 0.0382155420532115 | UDP-rhamnose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [PMID:15134748]
36 | GO:0010483 | 0.0382155420532115 | [NAME] | biological_process | Interaction between the pollen tube, part of the male gametophyte, and the ovule, part of the female gametophyte, that results in the arrest of pollen tube growth, rupture of the pollen tube and the release of the sperm cells. [GOC:tb, PMID:17673660]
36 | GO:0010508 | 0.0382155420532115 | positive regulation of autophagy | biological_process | Any process that activates, maintains or increases the rate of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
36 | GO:0015671 | 0.0382155420532115 | oxygen transport | biological_process | The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
36 | GO:0017186 | 0.0382155420532115 | peptidyl-pyroglutamic acid biosynthetic process, using glutaminyl-peptide cyclotransferase | biological_process | The chemical reactions and pathways resulting in the formation of peptidyl-pyroglutamic acid, catalyzed by glutaminyl-peptide cyclotransferase. [RESID:AA0031]
36 | GO:0018199 | 0.0382155420532115 | peptidyl-glutamine modification | biological_process | The modification of peptidyl-glutamine. [GOC:go_curators]
36 | GO:0019544 | 0.0382155420532115 | arginine catabolic process to glutamate | biological_process | The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including glutamate. [GOC:go_curators]
36 | GO:0030308 | 0.0382155420532115 | negative regulation of cell growth | biological_process | Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
36 | GO:0032509 | 0.0382155420532115 | endosome transport via multivesicular body sorting pathway | biological_process | The directed movement of substances from endosomes to lysosomes or vacuoles by a pathway in which molecules are sorted into multivesicular bodies, which then fuse with the target compartment. [GOC:mah, PMID:12461556, PMID:16689637]
36 | GO:0033169 | 0.0382155420532115 | histone H3-K9 demethylation | biological_process | The modification of histone H3 by the removal of a methyl group from lysine at position 9 of the histone. [GOC:mah]
36 | GO:0033478 | 0.0382155420532115 | UDP-rhamnose metabolic process | biological_process | The chemical reactions and pathways involving UDP-L-rhamnose, a substance composed of rhamnose in glycosidic linkage with uridine diphosphate. [GOC:mah, PMID:15134748]
36 | GO:0034097 | 0.0382155420532115 | response to cytokine stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus. [GOC:sl]
36 | GO:0034635 | 0.0382155420532115 | glutathione transport | biological_process | The directed movement of glutathione, the tripeptide glutamylcysteinylglycine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
36 | GO:0034720 | 0.0382155420532115 | histone H3-K4 demethylation | biological_process | The modification of histone H3 by the removal of a methyl group from lysine at position 4 of the histone. [GOC:mah]
36 | GO:0042306 | 0.0382155420532115 | regulation of protein import into nucleus | biological_process | Any process that modulates the frequency, rate or extent of movement of proteins from the cytoplasm to the nucleus. [GOC:jl]
36 | GO:0045836 | 0.0382155420532115 | positive regulation of meiosis | biological_process | Any process that activates or increases the frequency, rate or extent of meiosis. [GOC:go_curators]
36 | GO:0046719 | 0.0382155420532115 | regulation of viral protein levels in host cell | biological_process | Any virus-mediated process that modulates the levels of viral proteins in a cell. [GOC:ai]
36 | GO:0048199 | 0.0382155420532115 | vesicle targeting, to, from or within Golgi | biological_process | The process in which vesicles are directed to specific destination membranes during transport to, from or within the Golgi apparatus; mediated by the addition of specific coat proteins, including COPI and COPII proteins and clathrin, to the membrane during vesicle formation. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
36 | GO:0048209 | 0.0382155420532115 | regulation of vesicle targeting, to, from or within Golgi | biological_process | Any process that modulates the frequency, rate, or destination of vesicle-mediated transport to, from or within the Golgi apparatus. [GOC:jid, GOC:mah, ISBN:[PHONE], PMID:10219233]
36 | GO:0051648 | 0.0382155420532115 | [NAME] | biological_process | Any process in which a vesicle or vesicles are transported to, and/or maintained in, a specific location. [GOC:ai]
36 | GO:0051650 | 0.0382155420532115 | establishment of vesicle localization | biological_process | The directed movement of a vesicle to a specific location. [GOC:ai]
36 | GO:0051703 | 0.0382155420532115 | intraspecies interaction between organisms | biological_process | Any process in which an organism has an effect on an organism of the same species. [GOC:ai]
36 | GO:0060627 | 0.0382155420532115 | regulation of vesicle-mediated transport | biological_process | Any process that modulates the rate, frequency, or extent of vesicle-mediated transport, the directed movement of substances, either within a vesicle or in the vesicle membrane, into, out of or within a cell. [GOC:dph, GOC:tb]
36 | GO:0071345 | 0.0382155420532115 | cellular response to cytokine stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokine stimulus. [GOC:mah]
36 | GO:0071474 | 0.0382155420532115 | cellular hyperosmotic response | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. [GOC:mah]
36 | GO:0071475 | 0.0382155420532115 | cellular hyperosmotic salinity response | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:mah]
36 | GO:0071985 | 0.0382155420532115 | multivesicular body sorting pathway | biological_process | A vesicle-mediated transport process in which transmembrane proteins are ubiquitylated to facilitate their entry into luminal vesicles of multivesicular bodies (MVBs); upon subsequent fusion of MVBs with lysosomes or vacuoles, the cargo proteins are degraded. [GOC:mah, PMID:17603537]
36 | GO:0080094 | 0.0382155420532115 | response to trehalose-6-phosphate stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose-6-phosphate stimulus. [PMID:19193861]
36 | GO:1900022 | 0.0382155420532115 | regulation of D-erythro-sphingosine kinase activity | biological_process | Any process that modulates the frequency, rate or extent of D-erythro-sphingosine kinase activity. [GOC:signaling, GOC:TermGenie]
36 | GO:1900023 | 0.0382155420532115 | positive regulation of D-erythro-sphingosine kinase activity | biological_process | Any process that activates or increases the frequency, rate or extent of D-erythro-sphingosine kinase activity. [GOC:signaling, GOC:TermGenie]
36 | GO:1900180 | 0.0382155420532115 | regulation of protein localization to nucleus | biological_process | Any process that modulates the frequency, rate or extent of protein localization to nucleus. [GOC:TermGenie]
36 | GO:0051640 | 0.0386132065839303 | [NAME] | biological_process | Any process in which an organelle is transported to, and/or maintained in, a specific location. [GOC:ai]
36 | GO:0048583 | 0.0386703046923997 | regulation of response to stimulus | biological_process | Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
36 | GO:0071215 | 0.0386754597168652 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
36 | [NAME] | 0.0389492366386458 | cellular membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
36 | GO:0061024 | 0.0389492366386458 | membrane organization | biological_process | A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. [GOC:dph, GOC:tb]
36 | GO:0009955 | 0.0392744262346214 | adaxial/abaxial pattern specification | biological_process | The regionalization process in which differences in cell differentiation along the adaxial/abaxial are generated. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:isa_complete, GOC:tb]
36 | GO:0046777 | 0.0393801928410448 | protein autophosphorylation | biological_process | The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. [ISBN:[PHONE]]
36 | GO:0048469 | 0.0395416486342976 | cell maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state. [GOC:go_curators]
36 | GO:0048764 | 0.0395416486342976 | trichoblast maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a trichoblast cell to attain its fully functional state. [GOC:jid]
36 | GO:0048765 | 0.0395416486342976 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
36 | GO:0045935 | 0.0407997793439822 | positive regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
36 | GO:0010054 | 0.0432274084773295 | trichoblast differentiation | biological_process | The process in which a relatively unspecialized cell acquires the specialized features of a trichoblast, a root epidermal cell that will give rise to a root hair. [GOC:tb]
36 | GO:0051173 | 0.0438184912902859 | positive regulation of nitrogen compound metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
36 | GO:0043622 | 0.0438491012258317 | cortical microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell. [GOC:curators, GOC:dph, GOC:jl, GOC:mah]
36 | GO:0048506 | 0.0438491012258317 | regulation of timing of meristematic phase transition | biological_process | Any process that modulates the rate, frequency or extent of a change in identity of a meristem at a characteristic predetermined time point. [GOC:dph, GOC:jid, GOC:tb]
36 | GO:0048510 | 0.0438491012258317 | regulation of timing of transition from vegetative to reproductive phase | biological_process | The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs. [GOC:jid, PMID:8974397]
36 | GO:0009637 | 0.0445805395537175 | response to blue light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. [GOC:ai, GOC:mtg_far_red]
36 | GO:0016192 | 0.0450010473523619 | vesicle-mediated transport | biological_process | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000]
36 | GO:0009798 | 0.0470446892596461 | axis specification | biological_process | The establishment, maintenance and elaboration of a pattern along a line or around a point. [GOC:dph, GOC:go_curators, GOC:isa_complete]
36 | GO:0048467 | 0.0473342562406843 | gynoecium development | biological_process | The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower. [GOC:go_curators, PO:0008062]
36 | GO:0010817 | 0.048793816326926 | regulation of hormone levels | biological_process | Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. [GOC:BHF, GOC:dph, GOC:tb]
37 | GO:0006388 | 0.0220658778382491 | tRNA splicing, via endonucleolytic cleavage and ligation | biological_process | Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. [GOC:krc, ISBN:[PHONE], PMID:9582290]
37 | GO:0006809 | 0.0220658778382491 | nitric oxide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. [GOC:ai]
37 | GO:0015885 | 0.0220658778382491 | 5-formyltetrahydrofolate transport | biological_process | The directed movement of 5-formyltetrahydrofolate, the formylated derivative of tetrahydrofolate, into, out of, within, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
37 | GO:0046209 | 0.0220658778382491 | nitric oxide metabolic process | biological_process | The chemical reactions and pathways involving nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water. [GOC:ai]
37 | GO:0046655 | 0.0220658778382491 | folic acid metabolic process | biological_process | The chemical reactions and pathways involving folic acid, pteroylglutamic acid. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. [ISBN:[PHONE]]
37 | GO:0046656 | 0.0220658778382491 | folic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of folic acid, pteroylglutamic acid. [GOC:ai]
37 | GO:0051958 | 0.0220658778382491 | methotrexate transport | biological_process | The directed movement of methotrexate, 4-amino-10-methylformic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Methotrexate is a folic acid analogue and a potent competitive inhibitor of dihydrofolate reductase. [GOC:ai]
37 | [NAME] | 0.0220658778382491 | sulfate ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of sulfate ions within an organism or cell. [GOC:jid, GOC:mah]
37 | GO:0072505 | 0.0220658778382491 | divalent inorganic anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of divalent inorganic anions within an organism or cell. [GOC:mah]
37 | GO:0070085 | 0.0284183396286464 | glycosylation | biological_process | The covalent attachment of a glycosyl residue to a substrate molecule. [GOC:mah]
37 | GO:0022898 | 0.0321567621668134 | regulation of transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of transmembrane transporter activity. [GOC:dph, GOC:mtg_cardio, GOC:mtg_transport]
37 | GO:0032409 | 0.0321567621668134 | regulation of transporter activity | biological_process | Any process that modulates the activity of a transporter. [GOC:mah]
37 | GO:0032412 | 0.0321567621668134 | regulation of ion transmembrane transporter activity | biological_process | Any process that modulates the activity of an ion transporter. [GOC:mah, GOC:tb]
37 | GO:0006771 | 0.0436483036910705 | [NAME] process | biological_process | The chemical reactions and pathways involving riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
37 | GO:0008153 | 0.0436483036910705 | para-aminobenzoic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of para-aminobenzoic acid, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins. [ISBN:[PHONE], PMID:11377864, [NAME]
37 | GO:0009231 | 0.0436483036910705 | riboflavin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
37 | GO:0009875 | 0.0436483036910705 | pollen-pistil interaction | biological_process | The interaction between a pollen grain and pistil. [GOC:go_curators]
37 | GO:0009969 | 0.0436483036910705 | xyloglucan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:sm]
37 | GO:0010239 | 0.0436483036910705 | chloroplast mRNA processing | biological_process | Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs. [GOC:tb, PMID:9648738]
37 | GO:0015817 | 0.0436483036910705 | histidine transport | biological_process | The directed movement of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
37 | GO:0015884 | 0.0436483036910705 | folic acid transport | biological_process | The directed movement of folic acid (pteroylglutamic acid) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. [GOC:ai]
37 | GO:0036065 | 0.0436483036910705 | fucosylation | biological_process | The covalent attachment of a fucosyl group to an acceptor molecule. [CHEBI:62688, GOC:sart, PMID:19948734]
37 | GO:0042727 | 0.0436483036910705 | flavin-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. [CHEBI:30527, GOC:jl, GOC:mah]
37 | GO:0046621 | 0.0436483036910705 | negative regulation of organ growth | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of growth of an organ of an organism. [GOC:bf, GOC:tb]
37 | GO:0048552 | 0.0436483036910705 | regulation of metalloenzyme activity | biological_process | Any process that modulates the frequency, rate or extent of activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal. [GOC:ebc]
37 | GO:0048554 | 0.0436483036910705 | positive regulation of metalloenzyme activity | biological_process | Any process that activates, maintains or increases the rate activity of a metalloenzyme. A metalloenzyme is any enzyme that contains metal. [GOC:ebc]
37 | [NAME] | 0.0436483036910705 | simple leaf morphogenesis | biological_process | The leaf morphogenesis process which results in the shaping of a simple leaf. A simple leaf is a leaf in which the lamina is undivided. [GOC:dph, GOC:sdb_2009, GOC:tb]
37 | GO:0071366 | 0.0436483036910705 | cellular response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [GOC:mah]
37 | GO:0080158 | 0.0436483036910705 | chloroplast ribulose bisphosphate carboxylase complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a chloroplast ribulose bisphosphate carboxylase (RubisCO) complex. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex. [PMID:20561259]
37 | GO:1901016 | 0.0436483036910705 | regulation of potassium ion transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of potassium ion transmembrane transporter activity. [GOC:BHF, GOC:TermGenie]
37 | GO:1901379 | 0.0436483036910705 | regulation of potassium ion transmembrane transport | biological_process | Any process that modulates the frequency, rate or extent of potassium ion transmembrane transport. [GOC:BHF, GOC:TermGenie]
37 | GO:1901979 | 0.0436483036910705 | regulation of inward rectifier potassium channel activity | biological_process | Any process that modulates the frequency, rate or extent of inward rectifier potassium channel activity. [GOC:TermGenie, PMID:23449501]
37 | GO:2001257 | 0.0436483036910705 | regulation of cation channel activity | biological_process | Any process that modulates the frequency, rate or extent of cation channel activity. [GOC:BHF]
37 | GO:0015849 | 0.0456920688408513 | organic acid transport | biological_process | The directed movement of organic acids, any acidic compound containing carbon in covalent linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [ISBN:[PHONE]]
37 | GO:0046942 | 0.0456920688408513 | [NAME] | biological_process | The directed movement of carboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-). [GOC:ai]
38 | GO:0009269 | 0.00732800041145969 | response to desiccation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. [GOC:jl]
38 | GO:0009740 | 0.00867563197051183 | gibberellic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm]
38 | GO:0001881 | 0.0257435241447259 | receptor recycling | biological_process | The process that results in the return of receptor molecules to an active state and an active cellular location after they have been stimulated by a ligand. An active state is when the receptor is ready to receive a signal. [GOC:dph]
38 | GO:0006370 | 0.0257435241447259 | 7-methylguanosine mRNA capping | biological_process | Addition of the 7-methylguanosine cap to the 5' end of a nascent messenger RNA transcript. [GOC:mah, PMID:9266685]
38 | GO:0006580 | 0.0257435241447259 | [NAME] process | biological_process | The chemical reactions and pathways involving ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine). [CHEBI:16000, GOC:jl, ISBN:01928006X]
38 | GO:0009093 | 0.0257435241447259 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
38 | GO:0009452 | 0.0257435241447259 | 7-methylguanosine RNA capping | biological_process | The sequence of enzymatic reactions by which the 5' cap structure, an inverted 7-methylguanosine linked via a 5'-5' triphosphate bridge (m7G(5')ppp(5')X) to the first transcribed residue, is added to a nascent [NAME] polymerase II transcript. [PMID:9266685]
38 | GO:0015846 | 0.0257435241447259 | polyamine transport | biological_process | The directed movement of polyamines, organic compounds containing two or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc, ISBN:[PHONE]]
38 | GO:0019447 | 0.0257435241447259 | D-cysteine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of D-cysteine, (S)-2-amino-3-mercaptopropanoic acid, which occurs naturally in firefly luciferin. [GOC:go_curators, ISBN:[PHONE]]
38 | GO:0019478 | 0.0257435241447259 | D-amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of D-amino acids, the D-enantiomers of amino acids. [GOC:ai, GOC:jsg]
38 | GO:0031539 | 0.0257435241447259 | positive regulation of anthocyanin metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. [GOC:mah]
38 | GO:0032025 | 0.0257435241447259 | response to cobalt ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion stimulus. [GOC:mah]
38 | GO:0032388 | 0.0257435241447259 | positive regulation of intracellular transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of substances within cells. [GOC:mah]
38 | GO:0033562 | 0.0257435241447259 | cotranscriptional gene silencing by small RNA | biological_process | A process in which the targeting of nascent transcripts by the RITS complex mediates chromatin modifications and promotes the degradation of nascent transcripts synthesized in heterochromatic regions. [GOC:mah, PMID:17512405]
38 | GO:0033591 | 0.0257435241447259 | response to L-ascorbic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus. [GOC:sl]
38 | GO:0036260 | 0.0257435241447259 | RNA capping | biological_process | The sequence of enzymatic reactions by which a cap structure is added to the 5' end of a nascent [NAME] polymerase II transcript. All RNA polymerase II transcripts receive a 7-methyl-G cap. Then for (at least) small nuclear RNAs (snRNAs) and small nucleolar RNAs (snoRNAs), the7-methyl-G cap is hypermethylated to become a 2,2,7-trimethylguanosine (TMG) cap. [GOC:bf, GOC:krc, GOC:mah, PMID:18775984]
38 | GO:0043112 | 0.0257435241447259 | receptor metabolic process | biological_process | The chemical reactions and pathways involving a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function. [GOC:jl]
38 | GO:0046416 | 0.0257435241447259 | D-amino acid metabolic process | biological_process | The chemical reactions and pathways involving D-amino acids, the D-enantiomers of amino acids. [GOC:ai, GOC:jsg]
38 | GO:0046438 | 0.0257435241447259 | D-cysteine metabolic process | biological_process | The chemical reactions and pathways involving D-cysteine, (S)-2-amino-3-mercaptopropanoic acid, which occurs naturally in firefly luciferin. [GOC:ai]
38 | GO:0046824 | 0.0257435241447259 | positive regulation of nucleocytoplasmic transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of substances between the nucleus and the cytoplasm. [GOC:bf]
38 | GO:0046825 | 0.0257435241447259 | regulation of protein export from nucleus | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of proteins from the nucleus to the cytoplasm. [GOC:bf]
38 | GO:0046827 | 0.0257435241447259 | positive regulation of protein export from nucleus | biological_process | Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm. [GOC:bf]
38 | GO:0051222 | 0.0257435241447259 | positive regulation of protein transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
38 | GO:0090316 | 0.0257435241447259 | positive regulation of intracellular protein transport | biological_process | Any process that decreases the frequency, rate or extent of the directed movement of proteins within cells. [GOC:tb]
38 | GO:1901160 | 0.0257435241447259 | primary amino compound metabolic process | biological_process | The chemical reactions and pathways involving primary amino compound. [GOC:TermGenie]
38 | GO:1902047 | 0.0257435241447259 | polyamine transmembrane transport | biological_process | The directed movement of a polyamine macromolecule across a membrane. [GOC:TermGenie, GOC:vw]
38 | GO:0055067 | 0.0311013344982784 | monovalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of monovalent inorganic cations within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
38 | GO:0010264 | 0.0342505119145852 | myo-inositol hexakisphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds. [[NAME], PMID:16107538]
38 | [NAME] | 0.0342505119145852 | myo-inositol hexakisphosphate metabolic process | biological_process | The chemical reactions and pathways involving phytic acid, myo-inositol hexakisphosphate, a regulator of intracellular signaling, a highly abundant animal anti-nutrient and a phosphate and mineral storage compound in plant seeds. [[NAME], PMID:16107538]
38 | GO:0002238 | 0.036700620740351 | response to molecule of fungal origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octamer oligosaccharide. [GOC:rl, GOC:sm]
38 | GO:0032958 | 0.037500681534236 | inositol phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. [CHEBI:24848, [NAME], GOC:mah]
38 | GO:0007623 | 0.0433318800583073 | circadian rhythm | biological_process | Any biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:bf, GOC:go_curators]
38 | GO:0048511 | 0.0433318800583073 | rhythmic process | biological_process | Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism. [GOC:jid]
38 | GO:0007568 | 0.0440611511719129 | aging | biological_process | A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death (GO:0016265) and may succeed developmental maturation (GO:0021700). [GOC:PO_curators]
38 | GO:0046173 | 0.0444558010177371 | polyol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. [CHEBI:26191]
39 | GO:0009853 | 0.0041883690993566 | photorespiration | biological_process | A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:[PHONE]]
39 | GO:0006621 | 0.00975375759521672 | protein retention in ER lumen | biological_process | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. [ISBN:[PHONE], PMID:12972550]
39 | GO:0070455 | 0.00975375759521672 | positive regulation of heme biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of heme. [GOC:mah]
39 | GO:0080114 | 0.00975375759521672 | positive regulation of glycine hydroxymethyltransferase activity | biological_process | Any process that activates or increases the frequency, rate or extent of glycine hydroxymethyltransferase activity, the catalysis of the reaction 5,10-methylenetetrahydrofolate + glycine + H2O = tetrahydrofolate + L-serine. [EC:2.1.2.1, PMID:19223513]
39 | GO:0048481 | 0.0118320449122006 | ovule development | biological_process | The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. [GOC:tb]
39 | [NAME] | 0.0125011472630416 | plant-type ovary development | biological_process | The process whose specific outcome is the progression of an ovary that produces an ovule over time, from its formation to the mature structure. The ovary is the enlarged basal portion of a carpel and matures into a fruit. An ovule is the multicellular structure that gives rise to and contains the female reproductive cells, and develops into a seed. [GOC:bf, GOC:tb, ISBN:[PHONE]]
39 | GO:0010374 | 0.0130023723612869 | stomatal complex development | biological_process | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [PMID:17259259]
39 | GO:0080167 | 0.0146370226393878 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
39 | GO:0001708 | 0.0174460165647734 | cell fate specification | biological_process | The process involved in the specification of cell identity. Once specification has taken place, a cell will be committed to differentiate down a specific pathway if left in its normal environment. [GOC:go_curators]
39 | GO:0009411 | 0.0176715013494163 | response to UV | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:hb]
39 | GO:0009554 | 0.0194139240411197 | megasporogenesis | biological_process | The process in which the megasporocyte undergoes meiosis, giving rise to four haploid megaspores in the nucellus. [GOC:mtg_plant, GOC:tb]
39 | GO:0009650 | 0.0194139240411197 | UV protection | biological_process | Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV. [GOC:jl, GOC:ml]
39 | GO:0009729 | 0.0194139240411197 | detection of brassinosteroid stimulus | biological_process | The series of events in which a brassinosteroid stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
39 | GO:0010268 | 0.0194139240411197 | brassinosteroid homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of brassinosteroids within an organism or cell. [PMID:15908602]
39 | GO:0048654 | 0.0194139240411197 | anther morphogenesis | biological_process | The process in which the anatomical structures of the anther are generated and organized. [GOC:jid, GOC:sm]
39 | GO:0048655 | 0.0194139240411197 | anther wall tapetum morphogenesis | biological_process | The process in which the anatomical structures of the anther wall tapetum are generated and organized. The anther wall tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature. [GOC:jid, GOC:sm, GOC:tb]
39 | GO:0048656 | 0.0194139240411197 | anther wall tapetum formation | biological_process | The process that gives rise to the anther wall tapetum. This process pertains to the initial formation of a structure from unspecified parts. The anther wall tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature. [GOC:jid, GOC:sm, GOC:tb]
39 | GO:0048657 | 0.0194139240411197 | anther wall tapetum cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of an anther cell wall tapetum cell. The tapetum is a layer of cells that provides a source of nutrition for the pollen grains as they mature. [GOC:jid, GOC:sm]
39 | GO:0048658 | 0.0194139240411197 | anther wall tapetum development | biological_process | The process whose specific outcome is the progression of the anther wall tapetum over time, from its formation to the mature structure. [GOC:jid, GOC:sm, GOC:tb]
39 | GO:0055088 | 0.0194139240411197 | lipid homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of lipid within an organism or cell. [GOC:BHF, GOC:rl]
39 | GO:0080129 | 0.0222189136136846 | proteasome core complex assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. [PMID:12401807, PMID:17971041]
39 | GO:0016109 | 0.0241451736127684 | tetraterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tetraterpenoid compounds, terpenoids with eight isoprene units. [GOC:go_curators]
39 | GO:0016117 | 0.0241451736127684 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
39 | GO:0045165 | 0.0243102342807627 | cell fate commitment | biological_process | The commitment of cells to specific cell fates and their capacity to differentiate into particular kinds of cells. Positional information is established through protein signals that emanate from a localized source within a cell (the initial one-cell zygote) or within a developmental field. [ISBN:[PHONE]]
39 | GO:0048440 | 0.0251413076736766 | carpel development | biological_process | The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style. [GOC:go_curators]
39 | GO:0016108 | 0.0261594334454182 | tetraterpenoid metabolic process | biological_process | The chemical reactions and pathways involving tetraterpenoid compounds, terpenoids with eight isoprene units. [ISBN:[PHONE]]
39 | GO:0016116 | 0.0261594334454182 | [NAME] process | biological_process | The chemical reactions and pathways involving carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [ISBN:[PHONE]]
39 | GO:0006526 | 0.0289813825560044 | arginine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [CHEBI:29016, ISBN:[PHONE]]
39 | GO:0048455 | 0.0289813825560044 | stamen formation | biological_process | The process that contributes to the act of giving rise to the stamen. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
39 | GO:0010103 | 0.0293455660098391 | stomatal complex morphogenesis | biological_process | The process in which the anatomical structures of the stomatal complex are generated and organized. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [GOC:tair_curators]
39 | GO:0048467 | 0.0293455660098391 | gynoecium development | biological_process | The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower. [GOC:go_curators, PO:0008062]
39 | GO:0009813 | 0.0327286653224434 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
39 | GO:0009720 | 0.0384570081622667 | detection of hormone stimulus | biological_process | The series of events in which a hormone stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
39 | GO:0009726 | 0.0384570081622667 | detection of endogenous stimulus | biological_process | The series of events in which an endogenous stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
39 | GO:0010021 | 0.0384570081622667 | amylopectin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amylopectin, the (1->4) linked alpha glucose units with alpha-(1->6) linkages. [ISBN:[PHONE]]
39 | GO:0048448 | 0.0384570081622667 | stamen morphogenesis | biological_process | The process in which the anatomical structures of the stamen are generated and organized. [GOC:go_curators]
39 | GO:2000896 | 0.0384570081622667 | amylopectin metabolic process | biological_process | The chemical reactions and pathways involving an amylopectin. [GOC:mengo_curators]
39 | GO:0043248 | 0.0454090081004524 | proteasome assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active proteasome complex. [GOC:go_curators, PMID:10872471]
39 | GO:0051788 | 0.0454090081004524 | response to misfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus. [GOC:go_curators]
39 | GO:0009812 | 0.0467938155152557 | [NAME] process | biological_process | The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins. [GOC:tair_curators, ISBN:[PHONE]]
39 | GO:0000103 | 0.0478416677626629 | sulfate assimilation | biological_process | The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. [GOC:jl]
39 | GO:0006525 | 0.0478416677626629 | arginine metabolic process | biological_process | The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [[NAME], GOC:go_curators]
40 | GO:0009833 | 2.04507012162731e-05 | primary cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of cellulose and pectin-containing cell walls that form adjacent to the middle lamella following cell division and during cell expansion. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
40 | GO:0030244 | 0.000170921794015149 | cellulose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. [GOC:mah, ISBN:[PHONE]]
40 | GO:0006816 | 0.0019127791310203 | calcium ion transport | biological_process | The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
40 | GO:0048193 | 0.00283043145869621 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
40 | GO:0009834 | 0.00286640974381704 | secondary cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of inextensible cellulose- and pectin-containing cell walls that are formed between the plasma membrane and primary cell wall after cell expansion is complete. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
40 | GO:0007231 | 0.00435068075649191 | osmosensory signaling pathway | biological_process | The series of molecular signals initiated in response to osmotic change. [GOC:jl]
40 | GO:0010413 | 0.00676907072338202 | glucuronoxylan metabolic process | biological_process | The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units. [GOC:tair_curators]
40 | GO:0045492 | 0.00744946163423874 | [NAME] biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668]
40 | GO:0007010 | 0.0128186721157871 | cytoskeleton organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:dph, GOC:jl, GOC:mah]
40 | GO:0033500 | 0.0144194675418429 | carbohydrate homeostasis | biological_process | A homeostatic process involved in the maintenance of an internal steady state of a carbohydrate within an organism or cell. [GOC:mah]
40 | GO:0009225 | 0.024166133660737 | nucleotide-sugar metabolic process | biological_process | The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative. [ISBN:[PHONE]]
40 | GO:0007143 | 0.0275023984650482 | female meiosis | biological_process | A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle in the female germline. [GOC:dph, GOC:ems, GOC:mah]
40 | GO:0007638 | 0.0275023984650482 | mechanosensory behavior | biological_process | Behavior that is dependent upon the sensation of a mechanical stimulus. [GOC:go_curators]
40 | GO:0010159 | 0.0275023984650482 | specification of organ position | biological_process | The regionalization process in which information that determines the correct position at which organ primordia are formed is generated and perceived resulting in correct positioning of the new organ. [PMID:9611175]
40 | [NAME] | 0.0275023984650482 | sialic acid transport | biological_process | The directed movement of sialic acid into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
40 | GO:0015782 | 0.0275023984650482 | CMP-N-acetylneuraminate transport | biological_process | The directed movement of CMP-N-acetylneuraminate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
40 | GO:0019276 | 0.0275023984650482 | UDP-N-acetylgalactosamine metabolic process | biological_process | The chemical reactions and pathways involving UDP-N-acetylgalactosamine, a substance composed of N-acetylgalactosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. [GOC:ai]
40 | GO:0032527 | 0.0275023984650482 | protein exit from endoplasmic reticulum | biological_process | The directed movement of proteins from the endoplasmic reticulum. [GOC:rb]
40 | GO:0044708 | 0.0275023984650482 | single-organism behavior | biological_process | The specific actions or reactions of a single organism in response to external or internal stimuli. [GOC:jl]
40 | GO:0055068 | 0.0275023984650482 | cobalt ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of cobalt ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
40 | GO:0009086 | 0.0296328562008842 | methionine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
40 | GO:0009066 | 0.0344507812591317 | aspartate family amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the aspartate family, comprising asparagine, aspartate, lysine, methionine and threonine. [GOC:ai]
40 | GO:0009750 | 0.0344507812591317 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
40 | GO:0006555 | 0.0367951375919742 | [NAME] process | biological_process | The chemical reactions and pathways involving methionine (2-amino-4-(methylthio)butanoic acid), a sulfur-containing, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
40 | GO:0032940 | 0.0414163533264401 | secretion by cell | biological_process | The controlled release of a substance by a cell. [GOC:mah]
40 | GO:0046903 | 0.0414163533264401 | secretion | biological_process | The controlled release of a substance by a cell or a tissue. [GOC:ai]
40 | GO:0007030 | 0.0442264401686447 | Golgi organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the Golgi apparatus. [GOC:dph, GOC:jl, GOC:mah]
40 | GO:0048469 | 0.0468102637271192 | cell maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a cell to attain its fully functional state. [GOC:go_curators]
40 | GO:0048764 | 0.0468102637271192 | trichoblast maturation | biological_process | A developmental process, independent of morphogenetic (shape) change, that is required for a trichoblast cell to attain its fully functional state. [GOC:jid]
40 | GO:0048765 | 0.0468102637271192 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
41 | GO:0005986 | 0.00169572124943859 | sucrose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
41 | GO:0010325 | 0.00169572124943859 | raffinose family oligosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization). [GOC:tair_curators]
41 | GO:0044273 | 0.00169572124943859 | sulfur compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:jl]
41 | GO:0006518 | 0.00252167642520388 | peptide metabolic process | biological_process | The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. [CHEBI:16670, GOC:go_curators]
41 | GO:0009827 | 0.00470230076362237 | plant-type cell wall modification | biological_process | The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
41 | GO:0009838 | 0.00730839850445073 | abscission | biological_process | The controlled shedding of a body part. [ISBN:[PHONE]]
41 | GO:0042743 | 0.00733992593531635 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
41 | GO:0009944 | 0.00775188507886367 | polarity specification of adaxial/abaxial axis | biological_process | The process resulting in the establishment of polarity along the adaxial/abaxial axis. Adaxial refers to being situated toward an axis of an anatomical structure. Abaxial refers to being situated away from an axis of an anatomical structure. [GOC:dph, GOC:tb]
41 | GO:0010260 | 0.00923219276499756 | organ senescence | biological_process | The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:sm]
41 | GO:0044283 | 0.0115549167818474 | small molecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:pde, GOC:vw]
41 | GO:0044711 | 0.0121888397183914 | single-organism biosynthetic process | biological_process | A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. [GOC:jl]
41 | GO:0006059 | 0.0132715062360407 | hexitol metabolic process | biological_process | The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
41 | GO:0006751 | 0.0132715062360407 | glutathione catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, ISBN:[PHONE]]
41 | GO:0008285 | 0.0132715062360407 | negative regulation of cell proliferation | biological_process | Any process that stops, prevents or reduces the rate or extent of cell proliferation. [GOC:go_curators]
41 | GO:0009854 | 0.0132715062360407 | oxidative photosynthetic carbon pathway | biological_process | The reactions of the C2 pathway bring about the metabolic conversion of two molecules of 2-phosphoglycolate to one molecule of 3-phosphoglycerate, which can be used by the C3 cycle, and one molecule of carbon dioxide (CO2). [ISBN:[PHONE]]
41 | GO:0010047 | 0.0132715062360407 | fruit dehiscence | biological_process | The process leading to the spontaneous opening of the fruit permitting the escape of seeds. [GOC:tb, ISBN:[PHONE]]
41 | GO:0010378 | 0.0132715062360407 | temperature compensation of the circadian clock | biological_process | The process in which the circadian clock maintains robust and accurate timing over a broad range of physiological temperatures. The circadian clock is an endogenous 24-h timer found in most eukaryotes and in photosynthetic bacteria. The clock drives rhythms in the physiology, biochemistry, and metabolism of the organisms. [PMID:16617099]
41 | GO:0019401 | 0.0132715062360407 | alditol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
41 | GO:0019406 | 0.0132715062360407 | hexitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
41 | GO:0019593 | 0.0132715062360407 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
41 | GO:0019594 | 0.0132715062360407 | mannitol metabolic process | biological_process | The chemical reactions and pathways involving mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
41 | GO:0035019 | 0.0132715062360407 | somatic stem cell maintenance | biological_process | The process in which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line. [GOC:bf, [NAME]]
41 | GO:0042219 | 0.0132715062360407 | cellular modified amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of compounds derived from amino acids, organic acids containing one or more amino substituents. [GOC:ai]
41 | GO:0043171 | 0.0132715062360407 | peptide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. [GOC:jl]
41 | GO:0046937 | 0.0132715062360407 | [NAME] process | biological_process | The chemical reactions and pathways involving phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11. [ISBN:[PHONE]]
41 | GO:0046938 | 0.0132715062360407 | phytochelatin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytochelatins, any of a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. The structure is of the type (gamma-glutamyl-cysteinyl)n-glycine, where n is 2 to 11. [ISBN:[PHONE]]
41 | GO:0048578 | 0.0132715062360407 | positive regulation of long-day photoperiodism, flowering | biological_process | Any process that activates, maintains or increases long-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
41 | GO:0060964 | 0.0132715062360407 | regulation of gene silencing by miRNA | biological_process | Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [GOC:dph, GOC:tb]
41 | GO:0060966 | 0.0132715062360407 | regulation of gene silencing by RNA | biological_process | Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:tb]
41 | GO:0071993 | 0.0132715062360407 | [NAME] transport | biological_process | The directed movement of a phytochelatin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. [GOC:mah, ISBN:[PHONE]]
41 | GO:0071994 | 0.0132715062360407 | [NAME] | biological_process | The directed movement of a phytochelatin across a membrane into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Phytochelatins are a group of peptides that bind metals (Cd, Zn, Cu, Pb, Hg) in thiolate coordination complexes. [GOC:mah, ISBN:[PHONE]]
41 | GO:0042744 | 0.015645826519621 | hydrogen peroxide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl]
41 | GO:0070887 | 0.0163179220381063 | cellular response to chemical stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. [GOC:mah]
41 | GO:0070301 | 0.0178393904896903 | cellular response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [CHEBI:16240, GOC:mah]
41 | GO:0009860 | 0.020195924083393 | pollen tube growth | biological_process | Growth of pollen via tip extension of the intine wall. [ISBN:[PHONE]]
41 | GO:0006805 | 0.0263689738487252 | xenobiotic metabolic process | biological_process | The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:cab2]
41 | GO:0009830 | 0.0263689738487252 | cell wall modification involved in abscission | biological_process | A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. [GOC:dph, GOC:lr, GOC:sdb_2009, GOC:tb]
41 | GO:0010135 | 0.0263689738487252 | ureide metabolic process | biological_process | The chemical reactions and pathways involving ureide, allantoin and allantoate, which are the organic forms of nitrogen in nitrogen fixing and transporting plants. [GOC:pz]
41 | GO:0010136 | 0.0263689738487252 | ureide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium. [GOC:pz]
41 | GO:0015700 | 0.0263689738487252 | arsenite transport | biological_process | The directed movement of arsenite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
41 | GO:0016145 | 0.0263689738487252 | S-glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
41 | GO:0019287 | 0.0263689738487252 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. [GOC:go_curators, MetaCyc:PWY-922]
41 | GO:0019632 | 0.0263689738487252 | shikimate metabolic process | biological_process | The chemical reactions and pathways involving shikimate, (3R,4S,5R)--3,4,5-trihydroxycyclohex-1-ene-1-carboxylate, the anion of shikimic acid. It is an important intermediate in the biosynthesis of aromatic amino acids. [CHEBI:36208, GOC:sm, ISBN:[PHONE]]
41 | GO:0019759 | 0.0263689738487252 | glycosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
41 | GO:0019762 | 0.0263689738487252 | glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
41 | GO:0042344 | 0.0263689738487252 | indole glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [http://www.onelook.com]
41 | GO:0044277 | 0.0263689738487252 | cell wall disassembly | biological_process | A process that results in the breakdown of the cell wall. [GOC:jl]
41 | [NAME] | 0.0263689738487252 | regulation of posttranscriptional gene silencing | biological_process | Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
41 | GO:0071466 | 0.0263689738487252 | cellular response to xenobiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms. [GOC:mah]
41 | GO:2000033 | 0.0263689738487252 | regulation of seed dormancy process | biological_process | Any process that modulates the frequency, rate or extent of seed dormancy process. [GOC:obol, GOC:pr, ISBN:[PHONE]]
41 | GO:0048868 | 0.029732452746824 | [NAME] | biological_process | The process whose specific outcome is the progression of a pollen tube over time, from its initial formation to a mature structure. [GOC:isa_complete]
41 | GO:0034614 | 0.0312580976350303 | cellular response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mah]
41 | GO:0042436 | 0.0338545686632934 | indole-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl]
41 | GO:0034599 | 0.0360778184057662 | cellular response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah]
41 | GO:0006284 | 0.0392946576572974 | base-excision repair | biological_process | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. [ISBN:[PHONE]]
41 | GO:0006885 | 0.0392946576572974 | regulation of pH | biological_process | Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. [GOC:dph, GOC:go_curators, GOC:tb]
41 | GO:0009900 | 0.0392946576572974 | dehiscence | biological_process | The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it. [ISBN:[PHONE]]
41 | GO:0009938 | 0.0392946576572974 | negative regulation of gibberellic acid mediated signaling pathway | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of gibberellic acid mediated signaling activity. [GOC:sm]
41 | GO:0010586 | 0.0392946576572974 | miRNA metabolic process | biological_process | The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. [PMID:17993620]
41 | GO:0042343 | 0.0392946576572974 | indole glucosinolate metabolic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates. Glucosinolates are sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan; indoles are biologically active substances based on 2,3-benzopyrrole, formed during the catabolism of tryptophan. [http://www.onelook.com/]
41 | GO:0043043 | 0.0392946576572974 | peptide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide. [CHEBI:16670, GOC:dph, GOC:jl]
41 | GO:0048830 | 0.0392946576572974 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
41 | GO:0080050 | 0.0392946576572974 | regulation of seed development | biological_process | Any process that modulates the frequency, rate or extent of seed development. [PMID:19141706]
41 | GO:2000034 | 0.0392946576572974 | regulation of seed maturation | biological_process | Any process that modulates the frequency, rate or extent of seed maturation. [GOC:obol]
41 | GO:0010150 | 0.0428609025575204 | leaf senescence | biological_process | The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. [ISBN:[PHONE]]
41 | GO:0009751 | 0.0429239689134747 | response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:jl]
41 | GO:0032880 | 0.0460407860404269 | regulation of protein localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location. [GOC:dph, GOC:mah, GOC:tb]
41 | GO:0052542 | 0.0460407860404269 | defense response by callose deposition | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
42 | GO:0009736 | 0.000439448289780357 | cytokinin mediated signaling pathway | biological_process | A series of molecular signals induced by the detection of cytokinin. [GOC:sm]
42 | [NAME] | 0.0104157486038544 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
42 | GO:0071669 | 0.0108759143210538 | plant-type cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. [GOC:ecd, GOC:mah]
42 | GO:0006063 | 0.0135913015670342 | uronic acid metabolic process | biological_process | The chemical reactions and pathways involving uronic acid, any monocarboxylic acid formally derived by oxidizing to a carboxyl group the terminal hydroxymethylene group of either an aldose with four or more carbon atoms in the molecule, or of any glycoside derived from such an aldose. [ISBN:[PHONE]]
42 | GO:0006690 | 0.0135913015670342 | icosanoid metabolic process | biological_process | The chemical reactions and pathways involving icosanoids, any of a group of C20 polyunsaturated fatty acids. [GOC:ma]
42 | GO:0006880 | 0.0135913015670342 | intracellular sequestering of iron ion | biological_process | The process of binding or confining iron ions in an intracellular area such that they are separated from other components of a biological system. [GOC:ai]
42 | GO:0010581 | 0.0135913015670342 | regulation of starch biosynthetic process | biological_process | An process which modulate the frequency, rate or extent of starch biosynthesis, the chemical reactions and pathways resulting in the formation of starch. [GOC:tb]
42 | [NAME] | 0.0135913015670342 | regulation of glucan biosynthetic process | biological_process | Any process that modulates the rate, frequency, or extent of glucan biosynthesis. Glucan biosynthetic processes are the chemical reactions and pathways resulting in the formation of glucans, polysaccharides consisting only of glucose residues. [GOC:dph, GOC:tb]
42 | GO:0015846 | 0.0135913015670342 | polyamine transport | biological_process | The directed movement of polyamines, organic compounds containing two or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc, ISBN:[PHONE]]
42 | GO:0019369 | 0.0135913015670342 | arachidonic acid metabolic process | biological_process | The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer. [ISBN:[PHONE]]
42 | GO:0019373 | 0.0135913015670342 | epoxygenase P450 pathway | biological_process | The chemical reactions and pathways by which arachidonic acid is converted to other compounds including epoxyeicosatrienoic acids and dihydroxyeicosatrienoic acids. [GOC:mah, PMID:17979511]
42 | GO:0019586 | 0.0135913015670342 | [NAME] process | biological_process | The chemical reactions and pathways involving galacturonate, the anion of galacturonic acid, the uronic acid formally derived from galactose by oxidation of the hydroxymethylene group at C-6 to a carboxyl group. [ISBN:[PHONE]]
42 | GO:0032025 | 0.0135913015670342 | response to cobalt ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion stimulus. [GOC:mah]
42 | GO:0032885 | 0.0135913015670342 | regulation of polysaccharide biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of polysaccharides. [GOC:mah]
42 | GO:0033591 | 0.0135913015670342 | response to L-ascorbic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus. [GOC:sl]
42 | GO:0046396 | 0.0135913015670342 | D-galacturonate metabolic process | biological_process | The chemical reactions and pathways involving D-galacturonate, the D-enantiomer of galacturonate, the anion of galacturonic acid. D-galacturonic acid is a component of plant gums and bacterial cell walls. [GOC:ai, GOC:jsg, GOC:mah, ISBN:[PHONE]]
42 | GO:0051238 | 0.0135913015670342 | sequestering of metal ion | biological_process | The process of binding or confining metal ions such that they are separated from other components of a biological system. [GOC:ai]
42 | GO:0080055 | 0.0135913015670342 | low affinity nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. In low affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. [PMID:19050168]
42 | GO:1901568 | 0.0135913015670342 | fatty acid derivative metabolic process | biological_process | The chemical reactions and pathways involving fatty acid derivative. [GOC:pr, GOC:TermGenie]
42 | GO:1902047 | 0.0135913015670342 | polyamine transmembrane transport | biological_process | The directed movement of a polyamine macromolecule across a membrane. [GOC:TermGenie, GOC:vw]
42 | GO:0009966 | 0.0140624213155137 | regulation of signal transduction | biological_process | Any process that modulates the frequency, rate or extent of signal transduction. [GOC:sm]
42 | GO:0010646 | 0.0140624213155137 | regulation of cell communication | biological_process | Any process that modulates the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. [GOC:dph, GOC:tb]
42 | [NAME] | 0.0144288361755107 | cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah]
42 | GO:0023051 | 0.0147635208962981 | regulation of signaling | biological_process | Any process that modulates the frequency, rate or extent of a signaling process. [GOC:mtg_signal]
42 | GO:0055046 | 0.0170904974797181 | microgametogenesis | biological_process | The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure. [GOC:mtg_plant]
42 | GO:0000041 | 0.0202294273725808 | transition metal ion transport | biological_process | The directed movement of transition metal ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:[PHONE]]
42 | GO:0042546 | 0.0210556162772468 | cell wall biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cell wall. Includes biosynthesis of constituent macromolecules, such as proteins and polysaccharides, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. A cell wall is the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah, GOC:mtg_sensu, ISBN:[PHONE]]
42 | GO:0010351 | 0.0217514736998452 | lithium ion transport | biological_process | The directed movement of lithium ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [PMID:17270011]
42 | GO:0010107 | 0.0270000236792087 | potassium ion import | biological_process | The directed movement of potassium ions into a cell or organelle. [GOC:sm]
42 | GO:0010623 | 0.0270000236792087 | developmental programmed cell death | biological_process | The activation of endogenous cellular processes that result in the death of a cell as part of its development. [GOC:dph, GOC:tb]
42 | GO:0015700 | 0.0270000236792087 | arsenite transport | biological_process | The directed movement of arsenite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
42 | GO:0032881 | 0.0270000236792087 | regulation of polysaccharide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving polysaccharides. [GOC:mah]
42 | GO:0033273 | 0.0270000236792087 | response to vitamin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus. [GOC:sl]
42 | GO:0071366 | 0.0270000236792087 | cellular response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [GOC:mah]
42 | GO:0080036 | 0.0270000236792087 | regulation of cytokinin mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of signal transduction mediated by cytokinin. [GOC:dhl]
42 | GO:2000904 | 0.0270000236792087 | regulation of starch metabolic process | biological_process | Any process that modulates the frequency, rate or extent of starch metabolic process. [GOC:obol]
42 | GO:0034220 | 0.0300108800559838 | ion transmembrane transport | biological_process | A process in which an ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
42 | GO:0006826 | 0.0353665679491671 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
42 | GO:0071555 | 0.0376247387875859 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
42 | [NAME] | 0.0383989904154181 | cellular metal ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of metal ions at the level of a cell. [GOC:ai, GOC:mah]
42 | GO:0030001 | 0.0393530270909308 | metal ion transport | biological_process | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
42 | GO:0000188 | 0.0402285902160494 | inactivation of MAPK activity | biological_process | Any process that terminates the activity of the active enzyme MAP kinase. [PMID:9561267]
42 | GO:0007584 | 0.0402285902160494 | response to nutrient | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus. [GOC:go_curators]
42 | GO:0010262 | 0.0402285902160494 | somatic embryogenesis | biological_process | Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes. [GOC:sm, PMID:9611173]
42 | GO:0030026 | 0.0402285902160494 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
42 | GO:0051592 | 0.0402285902160494 | response to calcium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. [GOC:ai]
42 | GO:0055071 | 0.0402285902160494 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
42 | GO:0061077 | 0.0402285902160494 | chaperone-mediated protein folding | biological_process | The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw]
42 | GO:0080026 | 0.0402285902160494 | response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [PMID:18725356]
42 | GO:0080170 | 0.0402285902160494 | hydrogen peroxide transmembrane transport | biological_process | The process in which hydrogen peroxide is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute. [GOC:tb]
42 | GO:0044036 | 0.0411030692772231 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
42 | GO:0045229 | 0.0429603446680023 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
42 | GO:0034762 | 0.0447475670893295 | regulation of transmembrane transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of a solute from one side of a membrane to the other. [GOC:mah]
42 | GO:0034765 | 0.0447475670893295 | regulation of ion transmembrane transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. [GOC:mah]
42 | GO:0009827 | 0.0480576016814952 | plant-type cell wall modification | biological_process | The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
42 | GO:0010393 | 0.0480576016814952 | galacturonan metabolic process | biological_process | The chemical reactions and pathways involving galacturonan, a pectin polymer containing a backbone of alpha-(1->4)-linked D-galacturonic acid residues. [GOC:tair_curators]
42 | GO:0045488 | 0.0480576016814952 | pectin metabolic process | biological_process | The chemical reactions and pathways involving pectin, a group of galacturonic acid-containing, water-soluble colloidal carbohydrates of high molecular weight and of net negative charge. [GOC:tair_curators]
43 | GO:0009932 | 0.000784640654668832 | cell tip growth | biological_process | Growth that occurs specifically at the tip of a cell. [GOC:jid]
43 | GO:0071555 | 0.00172890243606464 | cell wall organization | biological_process | A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:mah]
43 | GO:0000041 | 0.00182201997902356 | transition metal ion transport | biological_process | The directed movement of transition metal ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:[PHONE]]
43 | GO:0032273 | 0.00198569898320766 | positive regulation of protein polymerization | biological_process | Any process that activates or increases the frequency, rate or extent of the process of creating protein polymers. [GOC:mah]
43 | GO:0051495 | 0.00215928962828813 | positive regulation of cytoskeleton organization | biological_process | Any process that activates or increases the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures. [GOC:ai]
43 | GO:0000904 | 0.00243537155955555 | cell morphogenesis involved in differentiation | biological_process | The change in form (cell shape and size) that occurs when relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. [GOC:go_curators]
43 | GO:0048765 | 0.00344107616725403 | [NAME] cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a root hair cell. [GOC:jid]
43 | GO:0048588 | 0.00388858154559657 | developmental cell growth | biological_process | The growth of a cell, where growth contributes to the progression of the cell over time from one condition to another. [GOC:go_curators, GOC:isa_complete]
43 | GO:0009638 | 0.00399337043497401 | phototropism | biological_process | The movement of an organism, or part of an organism, in response to a light stimulus, usually toward or away from it. [GOC:jl, GOC:mtg_far_red, PMID:16870491]
43 | GO:0009785 | 0.00399337043497401 | blue light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. [GOC:lr, GOC:sm]
43 | GO:0043622 | 0.00509349205174308 | cortical microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell. [GOC:curators, GOC:dph, GOC:jl, GOC:mah]
43 | GO:0010089 | 0.00573733744431605 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
43 | GO:0009069 | 0.00590562649009653 | [NAME] acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
43 | GO:0009740 | 0.00688691335565408 | gibberellic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm]
43 | GO:0042445 | 0.00721773984907897 | hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. [CHEBI:24621, GOC:jl]
43 | GO:0032535 | 0.0100354969044333 | regulation of cellular component size | biological_process | A process that modulates the size of a cellular component. [GOC:mah]
43 | GO:0090066 | 0.0100354969044333 | regulation of anatomical structure size | biological_process | Any process that modulates the size of an anatomical structure. [GOC:dph, GOC:tb]
43 | GO:0022898 | 0.0106897025174724 | regulation of transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of transmembrane transporter activity. [GOC:dph, GOC:mtg_cardio, GOC:mtg_transport]
43 | GO:0032409 | 0.0106897025174724 | regulation of transporter activity | biological_process | Any process that modulates the activity of a transporter. [GOC:mah]
43 | GO:0032412 | 0.0106897025174724 | regulation of ion transmembrane transporter activity | biological_process | Any process that modulates the activity of an ion transporter. [GOC:mah, GOC:tb]
43 | GO:0019344 | 0.0107234680882422 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
43 | [NAME] | 0.0111282525174658 | [NAME] process | biological_process | The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
43 | GO:0009070 | 0.0111282525174658 | [NAME] amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
43 | GO:0001578 | 0.0123121202430355 | microtubule bundle formation | biological_process | A process that results in a parallel arrangement of microtubules. [GOC:dph]
43 | GO:0006580 | 0.0123121202430355 | [NAME] process | biological_process | The chemical reactions and pathways involving ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine). [CHEBI:16000, GOC:jl, ISBN:01928006X]
43 | GO:0006690 | 0.0123121202430355 | icosanoid metabolic process | biological_process | The chemical reactions and pathways involving icosanoids, any of a group of C20 polyunsaturated fatty acids. [GOC:ma]
43 | GO:0010042 | 0.0123121202430355 | response to manganese ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a manganese ion stimulus. [GOC:sm]
43 | GO:0015904 | 0.0123121202430355 | tetracycline transport | biological_process | The directed movement of tetracycline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). [CHEBI:27902, GOC:curators]
43 | GO:0019369 | 0.0123121202430355 | arachidonic acid metabolic process | biological_process | The chemical reactions and pathways involving arachidonic acid, a straight chain fatty acid with 20 carbon atoms and four double bonds per molecule. Arachidonic acid is the all-Z-(5,8,11,14)-isomer. [ISBN:[PHONE]]
43 | GO:0019373 | 0.0123121202430355 | epoxygenase P450 pathway | biological_process | The chemical reactions and pathways by which arachidonic acid is converted to other compounds including epoxyeicosatrienoic acids and dihydroxyeicosatrienoic acids. [GOC:mah, PMID:17979511]
43 | GO:0031539 | 0.0123121202430355 | positive regulation of anthocyanin metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. [GOC:mah]
43 | GO:0042891 | 0.0123121202430355 | antibiotic transport | biological_process | The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
43 | GO:1900057 | 0.0123121202430355 | positive regulation of leaf senescence | biological_process | Any process that activates or increases the frequency, rate or extent of leaf senescence. [GOC:TermGenie]
43 | GO:1901160 | 0.0123121202430355 | primary amino compound metabolic process | biological_process | The chemical reactions and pathways involving primary amino compound. [GOC:TermGenie]
43 | GO:1901568 | 0.0123121202430355 | fatty acid derivative metabolic process | biological_process | The chemical reactions and pathways involving fatty acid derivative. [GOC:pr, GOC:TermGenie]
43 | GO:1901998 | 0.0123121202430355 | [NAME] | biological_process | The directed movement of a toxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:TermGenie, PMID:17118486]
43 | GO:0007155 | 0.0136777060131371 | cell adhesion | biological_process | The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules. [GOC:hb, GOC:pf]
43 | GO:0022610 | 0.0136777060131371 | biological adhesion | biological_process | The attachment of a cell or organism to a substrate or other organism. [GOC:isa_complete]
43 | GO:0030838 | 0.0146015334297507 | positive regulation of actin filament polymerization | biological_process | Any process that activates or increases the frequency, rate or extent of actin polymerization. [GOC:mah]
43 | [NAME] | 0.0146015334297507 | [NAME] nucleation | biological_process | The initial step in the formation of an actin filament, in which actin monomers combine to form a new filament. Nucleation is slow relative to the subsequent addition of more monomers to extend the filament. [ISBN:[PHONE]]
43 | GO:0009850 | 0.016553238252367 | [NAME] process | biological_process | The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth. [GOC:lr]
43 | GO:0009860 | 0.016553238252367 | pollen tube growth | biological_process | Growth of pollen via tip extension of the intine wall. [ISBN:[PHONE]]
43 | GO:0043900 | 0.016553238252367 | regulation of multi-organism process | biological_process | Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
43 | GO:0000096 | 0.0173689201095141 | sulfur amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids containing sulfur, comprising cysteine, homocysteine, methionine and selenocysteine. [GOC:ai]
43 | GO:0008064 | 0.0175813774398443 | regulation of actin polymerization or depolymerization | biological_process | Any process that modulates the frequency, rate or extent of the assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. [GOC:mah]
43 | GO:0030041 | 0.0175813774398443 | actin filament polymerization | biological_process | Assembly of actin filaments by the addition of actin monomers to a filament. [GOC:mah]
43 | GO:0030832 | 0.0175813774398443 | regulation of actin filament length | biological_process | Any process that controls the length of actin filaments in a cell. [GOC:dph, GOC:mah]
43 | GO:0030833 | 0.0175813774398443 | regulation of actin filament polymerization | biological_process | Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament. [GOC:mah]
43 | GO:0032956 | 0.0175813774398443 | regulation of actin cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins. [GOC:mah]
43 | [NAME] | 0.0175813774398443 | regulation of actin filament-based process | biological_process | Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the actin cytoskeleton. [GOC:mah]
43 | GO:0042446 | 0.0187573158036715 | hormone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. [CHEBI:24621, GOC:jl]
43 | GO:0008154 | 0.0197427253473288 | [NAME] polymerization or depolymerization | biological_process | Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament. [GOC:mah]
43 | GO:0006084 | 0.0208760717226349 | acetyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis. [ISBN:[PHONE]]
43 | GO:0000271 | 0.0210970043489225 | polysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
43 | GO:0006637 | 0.02204459250466 | acyl-CoA metabolic process | biological_process | The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [ISBN:[PHONE]]
43 | GO:0035383 | 0.02204459250466 | [NAME] process | biological_process | The chemical reactions and pathways involving a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
43 | GO:0009903 | 0.0244745969326882 | chloroplast avoidance movement | biological_process | The relocation process in which chloroplasts in photosynthetic cells avoid strong light and move away from it in order to preserve the photosynthetic machinery. [GOC:tb, PMID:11978863]
43 | GO:0009904 | 0.0244745969326882 | chloroplast accumulation movement | biological_process | The relocation process in which chloroplasts in photosynthetic cells move toward a brighter area in a cell to optimize photosynthesis. [GOC:tb, PMID:11978863]
43 | GO:0010360 | 0.0244745969326882 | negative regulation of anion channel activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity. [PMID:17319842]
43 | GO:0010361 | 0.0244745969326882 | regulation of anion channel activity by blue light | biological_process | Any process in which blue light modulates the frequency, rate or extent of anion channel activity. [GOC:dph, GOC:tb, PMID:17319842]
43 | GO:0010362 | 0.0244745969326882 | negative regulation of anion channel activity by blue light | biological_process | Any process in which blue light stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity. [PMID:17319842]
43 | GO:0031113 | 0.0244745969326882 | regulation of microtubule polymerization | biological_process | Any process that modulates the frequency, rate or extent of microtubule polymerization. [GOC:mah]
43 | GO:0031116 | 0.0244745969326882 | positive regulation of microtubule polymerization | biological_process | Any process that activates or increases the frequency, rate or extent of microtubule polymerization. [GOC:mah]
43 | GO:0032410 | 0.0244745969326882 | negative regulation of transporter activity | biological_process | Any process that stops or reduces the activity of a transporter. [GOC:mah]
43 | GO:0032413 | 0.0244745969326882 | negative regulation of ion transmembrane transporter activity | biological_process | Any process that stops or reduces the activity of an ion transporter. [GOC:mah, GOC:tb]
43 | GO:0042787 | 0.0244745969326882 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process | biological_process | The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators]
43 | GO:0046459 | 0.0244745969326882 | short-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids with a chain length of less than C6. [[NAME], ISBN:[PHONE]]
43 | GO:0071421 | 0.0244745969326882 | manganese ion transmembrane transport | biological_process | A process in which a manganese ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
43 | GO:1901016 | 0.0244745969326882 | regulation of potassium ion transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of potassium ion transmembrane transporter activity. [GOC:BHF, GOC:TermGenie]
43 | GO:1901379 | 0.0244745969326882 | regulation of potassium ion transmembrane transport | biological_process | Any process that modulates the frequency, rate or extent of potassium ion transmembrane transport. [GOC:BHF, GOC:TermGenie]
43 | GO:1901979 | 0.0244745969326882 | regulation of inward rectifier potassium channel activity | biological_process | Any process that modulates the frequency, rate or extent of inward rectifier potassium channel activity. [GOC:TermGenie, PMID:23449501]
43 | GO:2000652 | 0.0244745969326882 | regulation of secondary cell wall biogenesis | biological_process | Any process that modulates the frequency, rate or extent of secondary cell wall biogenesis. [GOC:obol]
43 | GO:2001257 | 0.0244745969326882 | regulation of cation channel activity | biological_process | Any process that modulates the frequency, rate or extent of cation channel activity. [GOC:BHF]
43 | GO:0048868 | 0.0244872243302998 | [NAME] | biological_process | The process whose specific outcome is the progression of a pollen tube over time, from its initial formation to a mature structure. [GOC:isa_complete]
43 | GO:0030029 | 0.0253550833325818 | [NAME]-based process | biological_process | Any cellular process that depends upon or alters the actin cytoskeleton, that part of the cytoskeleton comprising actin filaments and their associated proteins. [GOC:mah]
43 | GO:0071669 | 0.0270605802687621 | plant-type cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellulose- and pectin-containing cell wall. [GOC:ecd, GOC:mah]
43 | [NAME] | 0.0284149390875131 | cellular biogenic amine metabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
43 | GO:0009825 | 0.0284149390875131 | multidimensional cell growth | biological_process | The process in which a cell irreversibly increases in size in two or three [spatial] dimensions or along two or three axes. [ISBN:[PHONE]]
43 | GO:0043473 | 0.0284149390875131 | pigmentation | biological_process | The deposition or aggregation of coloring matter in an organism, tissue or cell. [GOC:jl]
43 | GO:0043476 | 0.0284149390875131 | pigment accumulation | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to some external stimulus. [GOC:jl]
43 | GO:0043478 | 0.0284149390875131 | pigment accumulation in response to UV light | biological_process | The aggregation of coloring matter in a particular location in an organism, tissue or cell, occurring in response to a UV light stimulus. [GOC:jl]
43 | GO:0043479 | 0.0284149390875131 | pigment accumulation in tissues in response to UV light | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
43 | GO:0043480 | 0.0284149390875131 | pigment accumulation in tissues | biological_process | The aggregation of coloring matter in a particular location in a tissue, occurring in response to an external stimulus. [GOC:jl]
43 | GO:0043481 | 0.0284149390875131 | anthocyanin accumulation in tissues in response to UV light | biological_process | The aggregation of the pigment anthocyanin in a particular location in a tissue, occurring in response to a UV light stimulus. [GOC:jl]
43 | GO:0006826 | 0.029479849603371 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
43 | [NAME] | 0.0321481912375732 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
43 | GO:0008652 | 0.0322203535106688 | cellular amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:[PHONE]]
43 | GO:0000097 | 0.0360072658714243 | sulfur amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine. [GOC:ai]
43 | GO:0006284 | 0.0364892252176822 | base-excision repair | biological_process | In base excision repair, an altered base is removed by a DNA glycosylase enzyme, followed by excision of the resulting sugar phosphate. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. [ISBN:[PHONE]]
43 | GO:0006828 | 0.0364892252176822 | manganese ion transport | biological_process | The directed movement of manganese (Mn) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
43 | GO:0006885 | 0.0364892252176822 | regulation of pH | biological_process | Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. [GOC:dph, GOC:go_curators, GOC:tb]
43 | GO:0009704 | 0.0364892252176822 | de-etiolation | biological_process | The greening response of plants grown in the dark (etiolated) as a result of chloroplast biogenesis and the accumulation of chlorophyll. [GOC:lr]
43 | [NAME] | 0.0364892252176822 | regulation of systemic acquired resistance | biological_process | Any process that modulates the frequency, rate or extent of systemic acquired resistance. [GOC:sm]
43 | GO:0010262 | 0.0364892252176822 | somatic embryogenesis | biological_process | Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes. [GOC:sm, PMID:9611173]
43 | GO:0030026 | 0.0364892252176822 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
43 | GO:0031110 | 0.0364892252176822 | regulation of microtubule polymerization or depolymerization | biological_process | Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule. [GOC:mah]
43 | GO:0031112 | 0.0364892252176822 | positive regulation of microtubule polymerization or depolymerization | biological_process | Any process that activates or increases the frequency, rate or extent of microtubule polymerization or depolymerization. [GOC:mah]
43 | GO:0032886 | 0.0364892252176822 | regulation of microtubule-based process | biological_process | Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton. [GOC:mah]
43 | GO:0051051 | 0.0364892252176822 | negative regulation of transport | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
43 | GO:0055071 | 0.0364892252176822 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
43 | GO:0070507 | 0.0364892252176822 | regulation of microtubule cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
43 | GO:1900055 | 0.0364892252176822 | regulation of leaf senescence | biological_process | Any process that modulates the frequency, rate or extent of leaf senescence. [GOC:TermGenie]
43 | GO:0009605 | 0.0366705905531452 | response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:hb]
43 | GO:0044106 | 0.0372137661218684 | cellular amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl]
43 | GO:0034762 | 0.0373915566552359 | regulation of transmembrane transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of a solute from one side of a membrane to the other. [GOC:mah]
43 | GO:0034765 | 0.0373915566552359 | regulation of ion transmembrane transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of ions from one side of a membrane to the other. [GOC:mah]
43 | GO:0006818 | 0.0399164880952123 | hydrogen transport | biological_process | The directed movement of hydrogen (H2 or H+), into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
43 | GO:0015992 | 0.0399164880952123 | proton transport | biological_process | The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
43 | GO:0007015 | 0.0420787597299359 | actin filament organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments. Includes processes that control the spatial distribution of actin filaments, such as organizing filaments into meshworks, bundles, or other structures, as by cross-linking. [GOC:mah]
43 | GO:0010119 | 0.0430660555660207 | regulation of stomatal movement | biological_process | Any process that modulates the frequency, rate or extent of stomatal movement. [GOC:sm]
43 | GO:0071804 | 0.0430660555660207 | cellular potassium ion transport | biological_process | The directed movement of potassium (K) ions into, out of, or within a cell. [GOC:mah, GOC:vw]
43 | GO:0071805 | 0.0430660555660207 | potassium ion transmembrane transport | biological_process | A process in which a potassium ion is transported from one side of a membrane to the other. [GOC:mah]
43 | GO:0048509 | 0.0435470238690574 | regulation of meristem development | biological_process | Any process that modulates the frequency, rate or extent of meristem development, the biological process whose specific outcome is the progression of the meristem over time, from its formation to the mature structure. [GOC:jid]
43 | GO:0009856 | 0.043768358939309 | pollination | biological_process | The cascade of biological processes occurring in plants beginning when the pollen lands on the stigma and continuing up to, but not including, fertilization, as defined by sperm-central cell fusion. [GOC:tb, PMID:10973091]
43 | [NAME] | 0.043768358939309 | multi-multicellular organism process | biological_process | A multicellular organism process which involves another multicellular organism of the same or different species. [GOC:jl]
43 | [NAME] | 0.0454916110132274 | gravitropism | biological_process | The orientation of plant parts under the stimulation of gravity. [ISBN:[PHONE]]
43 | GO:0010090 | 0.0472483109905912 | trichome morphogenesis | biological_process | The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
43 | GO:0043266 | 0.0483577789944042 | regulation of potassium ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
43 | GO:0046785 | 0.0483577789944042 | microtubule polymerization | biological_process | The addition of tubulin heterodimers to one or both ends of a microtubule. [GOC:ai]
43 | GO:0006813 | 0.0490391405532195 | potassium ion transport | biological_process | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
44 | GO:0009624 | 0.00244517464755698 | response to nematode | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a nematode. [GOC:hb]
44 | GO:0045893 | 0.00970317663504175 | positive regulation of transcription, DNA-dependent | biological_process | Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
44 | GO:0006857 | 0.013783819530837 | oligopeptide transport | biological_process | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:[PHONE]]
44 | GO:0048571 | 0.0141660816237788 | long-day photoperiodism | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that exceeds a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term long-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness falls short of the number of hours defined by 24 hours minus the critical day length. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
44 | GO:0048574 | 0.0141660816237788 | long-day photoperiodism, flowering | biological_process | A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light that exceeds the critical day length. The critical day length varies between species. Although the term is long-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness falls short of the number of hours defined by 24 minus the critical day length. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
44 | GO:0015833 | 0.0150758515634345 | peptide transport | biological_process | The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
44 | GO:0010046 | 0.0169491525424093 | response to mycotoxin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycotoxin stimulus. A mycotoxin is a toxic chemical substance produced by fungi. [GOC:sm]
44 | GO:0010378 | 0.0169491525424093 | temperature compensation of the circadian clock | biological_process | The process in which the circadian clock maintains robust and accurate timing over a broad range of physiological temperatures. The circadian clock is an endogenous 24-h timer found in most eukaryotes and in photosynthetic bacteria. The clock drives rhythms in the physiology, biochemistry, and metabolism of the organisms. [PMID:16617099]
44 | GO:0046839 | 0.0169491525424093 | phospholipid dephosphorylation | biological_process | The process of removing one or more phosphate groups from a phosphorylated lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents. [ISBN:[PHONE]]
44 | GO:0046856 | 0.0169491525424093 | phosphatidylinositol dephosphorylation | biological_process | The process of removing one or more phosphate groups from a phosphatidylinositol. [ISBN:[PHONE]]
44 | GO:0048578 | 0.0169491525424093 | positive regulation of long-day photoperiodism, flowering | biological_process | Any process that activates, maintains or increases long-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
44 | GO:0050691 | 0.0169491525424093 | regulation of defense response to virus by host | biological_process | Any host process that modulates the frequency, rate, or extent of the antiviral response of a host cell or organism. [GOC:ai, GOC:dph]
44 | GO:0009867 | 0.0203722165901019 | [NAME] mediated signaling pathway | biological_process | A series of molecular signals mediated by [NAME]. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
44 | GO:0071395 | 0.0203722165901019 | cellular response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:mah]
44 | GO:0042886 | 0.0209092747118709 | amide transport | biological_process | The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl, ISBN:[PHONE]]
44 | GO:0009556 | 0.0226771746211968 | microsporogenesis | biological_process | The process in which the microsporocyte undergoes meiosis, giving rise to four haploid microspores. [GOC:mtg_plant, GOC:tb]
44 | GO:0048236 | 0.0226771746211968 | plant-type spore development | biological_process | The process whose specific outcome is the progression of the spore over time, from its formation to the mature structure. The spore gives rise to gametophytes. [GOC:jid, http://www.m-w.com]
44 | GO:0006816 | 0.0239558557731248 | calcium ion transport | biological_process | The directed movement of calcium (Ca) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
44 | GO:0006944 | 0.0290024864525088 | cellular membrane fusion | biological_process | The cellular process that joins two lipid bilayers to form a single membrane. [GOC:mah]
44 | GO:0061025 | 0.0290024864525088 | membrane fusion | biological_process | The membrane organization process that joins two lipid bilayers to form a single membrane. [GOC:dph, GOC:tb]
44 | GO:0052386 | 0.0327948015513349 | cell wall thickening | biological_process | A type of cell wall modification in which the cell wall is reinforced and made thicker. [GOC:mtg_pamgo_17jul06]
44 | GO:0052543 | 0.0327948015513349 | callose deposition in cell wall | biological_process | Any process in which callose is transported to, and/or maintained in, the cell wall. [NAME] is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
44 | GO:2000377 | 0.0332973406970512 | regulation of reactive oxygen species metabolic process | biological_process | Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
44 | GO:0002697 | 0.0336136959344149 | regulation of immune effector process | biological_process | Any process that modulates the frequency, rate, or extent of an immune effector process. [GOC:add]
44 | GO:0009107 | 0.0336136959344149 | lipoate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. [GOC:ai, ISBN:[PHONE]]
44 | GO:0010088 | 0.0336136959344149 | phloem development | biological_process | The formation of the principal food-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
44 | GO:0015688 | 0.0336136959344149 | iron chelate transport | biological_process | The directed movement of iron chelates into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An iron chelate is a heterocyclic compound having a metal ion attached by coordinate bonds to at least two nonmetal ions. [GOC:ai]
44 | GO:0015712 | 0.0336136959344149 | hexose phosphate transport | biological_process | The directed movement of hexose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
44 | GO:0015760 | 0.0336136959344149 | glucose-6-phosphate transport | biological_process | The directed movement of glucose-6-phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
44 | GO:0050688 | 0.0336136959344149 | regulation of defense response to virus | biological_process | Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism. [GOC:ai]
44 | GO:0080165 | 0.0336136959344149 | callose deposition in phloem sieve plate | biological_process | Any process in which callose is transported to, and/or maintained in, phloem sieve plate. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [PMID:19470642]
44 | GO:1901678 | 0.0336136959344149 | iron coordination entity transport | biological_process | The directed movement of an iron coordination entity into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:pr, GOC:TermGenie]
44 | GO:0010017 | 0.0364930387923666 | red or far-red light signaling pathway | biological_process | The series of molecular signals initiated upon sensing by photoreceptor molecules of red light or far red light. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:lr, GOC:mtg_far_red, GOC:sm]
44 | GO:0030001 | 0.037004068424254 | metal ion transport | biological_process | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
44 | GO:0071489 | 0.0403435145281095 | cellular response to red or far red light | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mah]
44 | GO:0006812 | 0.0423530704216309 | cation transport | biological_process | The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
44 | GO:0010118 | 0.0424592678005947 | stomatal movement | biological_process | The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata). [GOC:sm]
44 | GO:0000165 | 0.0427830742011777 | MAPK cascade | biological_process | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP [NAME]-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
44 | GO:0007243 | 0.0427830742011777 | intracellular protein kinase cascade | biological_process | A series of reactions in which a signal is passed on to downstream proteins within the cell by sequential protein phosphorylation and activation of the cascade components. [GOC:bf, GOC:jl, GOC:signaling]
44 | GO:0009581 | 0.0484768722762539 | detection of external stimulus | biological_process | The series of events in which an external stimulus is received by a cell and converted into a molecular signal. [GOC:hb]
44 | GO:0009643 | 0.0499983645576329 | photosynthetic acclimation | biological_process | A response to light intensity in which exposure to medium-intensity light results in increased tolerance to high-intensity light. [GOC:mah, PMID:11069694]
44 | GO:0009864 | 0.0499983645576329 | induced systemic resistance, [NAME] mediated signaling pathway | biological_process | The series of molecular signals mediated by [NAME] involved in induced systemic resistance. [GOC:jy]
44 | GO:0010289 | 0.0499983645576329 | homogalacturonan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the pectidic homogalacturonan, characterized by a backbone of (1->4)-linked alpha-D-GalpA residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3. [PMID:12913136, PMID:16540543]
44 | [NAME] | 0.0499983645576329 | triose phosphate transport | biological_process | The directed movement of triose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
44 | GO:0030026 | 0.0499983645576329 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
44 | GO:0035436 | 0.0499983645576329 | triose phosphate transmembrane transport | biological_process | The directed movement of triose phosphate across a membrane by means of some agent such as a transporter or pore. Triose phosphate is any organic three carbon compound phosphate ester. [GOC:bf, ISBN:[PHONE]]
44 | GO:0051592 | 0.0499983645576329 | response to calcium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. [GOC:ai]
44 | GO:0055071 | 0.0499983645576329 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
44 | GO:0071456 | 0.0499983645576329 | cellular response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:mah]
44 | GO:0080050 | 0.0499983645576329 | regulation of seed development | biological_process | Any process that modulates the frequency, rate or extent of seed development. [PMID:19141706]
44 | GO:2000034 | 0.0499983645576329 | regulation of seed maturation | biological_process | Any process that modulates the frequency, rate or extent of seed maturation. [GOC:obol]
45 | [NAME] | 0.00462563014335325 | plant-type cell wall organization | biological_process | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_sensu]
45 | GO:0009063 | 0.00503212503981071 | cellular amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents. [GOC:ai]
45 | [NAME] | 0.0105609266662471 | cellular biogenic amine metabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
45 | GO:0044106 | 0.0151453795506631 | cellular amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl]
45 | GO:0014074 | 0.0159897665493864 | response to purine-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a purine-containing compound stimulus. [CHEBI:26401, GOC:ef]
45 | GO:0033198 | 0.0159897665493864 | response to ATP | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ATP (adenosine 5'-triphosphate) stimulus. [GOC:sl]
45 | GO:0035019 | 0.0159897665493864 | somatic stem cell maintenance | biological_process | The process in which an organism retains a population of somatic stem cells, undifferentiated cells in the embryo or adult which can undergo unlimited division and give rise to cell types of the body other than those of the germ-line. [GOC:bf, [NAME]]
45 | [NAME] | 0.0159897665493864 | cellular response to sucrose starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sucrose. [GOC:jl]
45 | [NAME] | 0.0159897665493864 | barbed-end actin filament capping | biological_process | The binding of a protein or protein complex to the barbed (or plus) end of an actin filament, thus preventing the addition, exchange or removal of further actin subunits. [ISBN:071673706X]
45 | GO:0080051 | 0.0159897665493864 | cutin transport | biological_process | The directed movement of cutin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [NAME], which consists of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface. [PMID:17951461]
45 | GO:0052541 | 0.0176037096804508 | plant-type cell wall cellulose metabolic process | biological_process | The chemical reactions and pathways involving cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation, as part of the organization and biogenesis of the cell wall. [GOC:mah, ISBN:[PHONE]]
45 | GO:0055072 | 0.0176037096804508 | iron ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of iron ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
45 | GO:0006820 | 0.017758756459477 | anion transport | biological_process | The directed movement of anions, atoms or small molecules with a net negative charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
45 | GO:0044036 | 0.0183750303394657 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
45 | GO:0009651 | 0.0216252133206028 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
45 | GO:0009310 | 0.0223293975734918 | amine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
45 | GO:0010087 | 0.0223293975734918 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
45 | [NAME] | 0.0223293975734918 | cellular biogenic amine catabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells resulting in the breakdown of biogenic amines, any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:go_curators, GOC:jl, ISBN:[PHONE]]
45 | GO:1901606 | 0.0229711208561311 | alpha-amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of an alpha-amino acid. [GOC:TermGenie]
45 | GO:0031408 | 0.0232114863822347 | oxylipin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. [GOC:mah, PMID:11960741]
45 | GO:0010073 | 0.0241755495818331 | meristem maintenance | biological_process | Any process involved in maintaining the identity, size and shape of a meristem. [GOC:tb]
45 | GO:0044283 | 0.0252129017994602 | small molecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:pde, GOC:vw]
45 | GO:0031407 | 0.0262546034047919 | oxylipin metabolic process | biological_process | The chemical reactions and pathways involving any oxylipin, any of a group of biologically active compounds formed by oxidative metabolism of polyunsaturated fatty acids. [GOC:mah, PMID:11960741]
45 | GO:0048589 | 0.0275039027496022 | developmental growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell, where the increase in size or mass has the specific outcome of the progression of the organism over time from one condition to another. [GOC:go_curators]
45 | GO:0044711 | 0.0292238409168509 | single-organism biosynthetic process | biological_process | A biosynthetic process - chemical reactions and pathways resulting in the formation of substances - involving a single organism. [GOC:jl]
45 | GO:0006970 | 0.0311002532436989 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
45 | GO:0001887 | 0.0317263767116029 | selenium compound metabolic process | biological_process | The chemical reactions and pathways involving compounds that contain selenium, such as selenocysteine. [PMID:12730456]
45 | GO:0006529 | 0.0317263767116029 | asparagine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid. [GOC:go_curators]
45 | GO:0006537 | 0.0317263767116029 | glutamate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators]
45 | GO:0008216 | 0.0317263767116029 | [NAME] process | biological_process | The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:ai]
45 | GO:0008295 | 0.0317263767116029 | spermidine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:[PHONE]]
45 | GO:0010052 | 0.0317263767116029 | guard cell differentiation | biological_process | The process in which a guard mother cell acquires the specialized features of a guard cell. [GOC:[NAME], GOC:tb]
45 | GO:0010441 | 0.0317263767116029 | guard cell development | biological_process | The process whose specific outcome is the progression of the guard cell over time, from its formation to the mature structure. [GOC:tb]
45 | GO:0010442 | 0.0317263767116029 | guard cell morphogenesis | biological_process | Generation and organization of the polarized cell that is capable of turgor driven movement. [GOC:[NAME], GOC:tb]
45 | GO:0015908 | 0.0317263767116029 | fatty acid transport | biological_process | The directed movement of fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [GOC:ai]
45 | GO:0019676 | 0.0317263767116029 | ammonia assimilation cycle | biological_process | The pathway by which ammonia is processed and incorporated into a cell. In an energy-rich (glucose-containing), nitrogen-poor environment, glutamine synthetase and glutamate synthase form an ammonia assimilatory cycle, in which ammonia is incorporated into L-glutamate to form L-glutamine, which then combines with alpha-ketoglutarate to regenerate L-glutamate. This ATP-dependent cycle is essential for nitrogen-limited growth and for steady-state growth with some sources of nitrogen. [MetaCyc:AMMASSIM-PWY]
45 | GO:0046683 | 0.0317263767116029 | response to organophosphorus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organophosphorus stimulus. Organophosphorus is a compound containing phosphorus bound to an organic molecule; several organophosphorus compounds are used as insecticides, and they are highly toxic cholinesterase inhibitors. [ISBN:[PHONE]]
45 | GO:0010039 | 0.0327909439623126 | response to iron ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm]
45 | GO:0006633 | 0.0371475419937158 | fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:mah, ISBN:[PHONE]]
45 | GO:0040007 | 0.0386350816040348 | growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell. [GOC:bf, GOC:ma]
45 | GO:0006569 | 0.0398912204130211 | tryptophan catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:[PHONE]]
45 | GO:0046218 | 0.0398912204130211 | indolalkylamine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
45 | GO:0016053 | 0.0399670162910806 | organic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of organic acids, any acidic compound containing carbon in covalent linkage. [ISBN:[PHONE]]
45 | GO:0046394 | 0.0399670162910806 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the formation of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups. [ISBN:[PHONE]]
45 | GO:0015849 | 0.0400689197508203 | organic acid transport | biological_process | The directed movement of organic acids, any acidic compound containing carbon in covalent linkage, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [ISBN:[PHONE]]
45 | GO:0046942 | 0.0400689197508203 | [NAME] | biological_process | The directed movement of carboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carboxylic acids are organic acids containing one or more carboxyl (COOH) groups or anions (COO-). [GOC:ai]
45 | GO:0048767 | 0.0401633737387034 | [NAME] elongation | biological_process | The process in which the root hair grows longer. [GOC:jid, PMID:12468740]
45 | GO:0006833 | 0.0449422842659443 | water transport | biological_process | The directed movement of water (H2O) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
45 | [NAME] | 0.0449422842659443 | [NAME] | biological_process | The directed movement of substances that are in liquid form in normal living conditions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
45 | GO:0072330 | 0.0461945615643975 | monocarboxylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
45 | GO:0048588 | 0.0465311827713374 | developmental cell growth | biological_process | The growth of a cell, where growth contributes to the progression of the cell over time from one condition to another. [GOC:go_curators, GOC:isa_complete]
45 | GO:0006541 | 0.0472137987093984 | glutamine metabolic process | biological_process | The chemical reactions and pathways involving glutamine, 2-amino-4-carbamoylbutanoic acid. [GOC:ai]
45 | GO:0010067 | 0.0472137987093984 | procambium histogenesis | biological_process | The formation of the primary meristem or meristematic tissue that gives rise to the primary vascular tissue. [GOC:tb, ISBN:[PHONE]]
45 | GO:0010343 | 0.0472137987093984 | singlet oxygen-mediated programmed cell death | biological_process | Programmed cell death induced by singlet oxygen. Programmed cell death is the cell death resulting from activation of endogenous cellular processes. [GOC:mtg_apoptosis, PMID:17075038]
45 | GO:0010586 | 0.0472137987093984 | miRNA metabolic process | biological_process | The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. [PMID:17993620]
45 | GO:0071452 | 0.0472137987093984 | cellular response to singlet oxygen | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst. [GOC:mah]
45 | GO:0097468 | 0.0472137987093984 | programmed cell death in response to reactive oxygen species | biological_process | Cell death resulting from activation of endogenous cellular processes and occurring as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mtg_apoptosis]
45 | GO:0006826 | 0.0475138277957733 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
45 | [NAME] | 0.0475138277957733 | aromatic amino acid family catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
45 | GO:0042436 | 0.0475138277957733 | indole-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl]
45 | GO:0052546 | 0.0475138277957733 | cell wall pectin metabolic process | biological_process | The chemical reactions and pathways involving pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues, as part of the organization and biogenesis of the cell wall. [GOC:ai]
45 | GO:0009888 | 0.0481990824810037 | tissue development | biological_process | The process whose specific outcome is the progression of a tissue over time, from its formation to the mature structure. [ISBN:[PHONE]]
45 | GO:0042221 | 0.0499570725355414 | response to chemical stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. [GOC:jl]
46 | GO:0071732 | 0.00124954839678788 | cellular response to nitric oxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf]
46 | GO:0048574 | 0.00125333136111325 | long-day photoperiodism, flowering | biological_process | A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light that exceeds the critical day length. The critical day length varies between species. Although the term is long-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness falls short of the number of hours defined by 24 minus the critical day length. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
46 | GO:0048582 | 0.00312437652171471 | positive regulation of post-embryonic development | biological_process | Any process that activates or increases the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. [GOC:jid]
46 | GO:0042752 | 0.0112307891490948 | regulation of circadian rhythm | biological_process | Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:dph, GOC:jl, GOC:tb]
46 | GO:0006882 | 0.0138231216860616 | cellular zinc ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of zinc ions at the level of a cell. [GOC:ai, GOC:mah]
46 | GO:0010208 | 0.0138231216860616 | [NAME] assembly | biological_process | The formation of reticulate pollen wall pattern consisting of two layers, exine and intine. [PMID:11743117]
46 | GO:0010584 | 0.0138231216860616 | [NAME] formation | biological_process | The formation of the pollen exine. The reticulate pollen wall pattern consists of two layers, exine and intine. [GOC:dhl]
46 | GO:0010927 | 0.0138231216860616 | cellular component assembly involved in morphogenesis | biological_process | The cellular component assembly that is part of the initial shaping of the component during its developmental progression. [GOC:dph, GOC:tb]
46 | GO:0009736 | 0.0174740236229867 | cytokinin mediated signaling pathway | biological_process | A series of molecular signals induced by the detection of cytokinin. [GOC:sm]
46 | GO:0071368 | 0.0174740236229867 | cellular response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:mah]
46 | GO:0007623 | 0.018870340089756 | circadian rhythm | biological_process | Any biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:bf, GOC:go_curators]
46 | GO:0048511 | 0.018870340089756 | rhythmic process | biological_process | Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism. [GOC:jid]
46 | GO:0055069 | 0.0205573744158405 | zinc ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of zinc ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
46 | GO:0006848 | 0.0206267988487004 | pyruvate transport | biological_process | The directed movement of pyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
46 | GO:0007338 | 0.0206267988487004 | single fertilization | biological_process | The union of male and female gametes to form a zygote. [GOC:ems, GOC:mtg_sensu]
46 | GO:0009443 | 0.0206267988487004 | pyridoxal 5'-phosphate salvage | biological_process | Any process that generates pyridoxal 5'-phosphate, the active form of vitamin [NAME], from derivatives of it without de novo synthesis. [GOC:jl]
46 | GO:0010378 | 0.0206267988487004 | temperature compensation of the circadian clock | biological_process | The process in which the circadian clock maintains robust and accurate timing over a broad range of physiological temperatures. The circadian clock is an endogenous 24-h timer found in most eukaryotes and in photosynthetic bacteria. The clock drives rhythms in the physiology, biochemistry, and metabolism of the organisms. [PMID:16617099]
46 | GO:0018108 | 0.0206267988487004 | peptidyl-tyrosine phosphorylation | biological_process | The phosphorylation of peptidyl-tyrosine to form peptidyl-O4'-phospho-L-tyrosine. [RESID:AA0039]
46 | GO:0018212 | 0.0206267988487004 | peptidyl-tyrosine modification | biological_process | The modification of peptidyl-tyrosine. [GOC:go_curators]
46 | GO:0042822 | 0.0206267988487004 | pyridoxal phosphate metabolic process | biological_process | The chemical reactions and pathways involving pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin [NAME]. [GOC:jl, http://www.mercksource.com/]
46 | GO:0042823 | 0.0206267988487004 | pyridoxal phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pyridoxal phosphate, pyridoxal phosphorylated at the hydroxymethyl group of C-5, the active form of vitamin [NAME]. [GOC:jl, http://www.mercksource.com/]
46 | GO:0043433 | 0.0206267988487004 | negative regulation of sequence-specific DNA binding transcription factor activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. [GOC:jl]
46 | GO:0048578 | 0.0206267988487004 | positive regulation of long-day photoperiodism, flowering | biological_process | Any process that activates, maintains or increases long-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
46 | GO:0048640 | 0.0206267988487004 | negative regulation of developmental growth | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of developmental growth. [GOC:go_curators]
46 | GO:0050730 | 0.0206267988487004 | regulation of peptidyl-tyrosine phosphorylation | biological_process | Any process that modulates the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine. [GOC:ai]
46 | GO:0050732 | 0.0206267988487004 | negative regulation of peptidyl-tyrosine phosphorylation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the phosphorylation of peptidyl-tyrosine. [GOC:ai]
46 | GO:0051090 | 0.0206267988487004 | regulation of sequence-specific DNA binding transcription factor activity | biological_process | Any process that modulates the frequency, rate or extent of the activity of a transcription factor, any factor involved in the initiation or regulation of transcription. [GOC:ai]
46 | GO:0071219 | 0.0206267988487004 | cellular response to molecule of bacterial origin | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. [GOC:mah]
46 | GO:0071323 | 0.0206267988487004 | cellular response to chitin | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:mah]
46 | GO:0080088 | 0.0206267988487004 | spermidine hydroxycinnamate conjugate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine hydroxycinnamate conjugates. [PMID:19077165]
46 | [NAME] | 0.0206267988487004 | pyruvate transmembrane transport | biological_process | The directed movement of pyruvate across a membrane. [GOC:TermGenie]
46 | GO:0010089 | 0.0231963053211399 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
46 | GO:0002238 | 0.0243396434315048 | response to molecule of fungal origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of fungal origin such as chito-octamer oligosaccharide. [GOC:rl, GOC:sm]
46 | GO:0009646 | 0.0243396434315048 | response to absence of light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli. [GOC:go_curators]
46 | GO:0009651 | 0.0255406064307372 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
46 | GO:0010167 | 0.0373270541381117 | response to nitrate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. [GOC:sm]
46 | GO:0006970 | 0.0379046098082837 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
46 | GO:0015706 | 0.0400260248847209 | nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
46 | GO:0000255 | 0.0408313635293558 | allantoin metabolic process | biological_process | The chemical reactions and pathways involving allantoin, (2,5-dioxo-4-imidazolidinyl)urea, an intermediate or end product of purine catabolism. [GOC:mah, ISBN:[PHONE]]
46 | GO:0000256 | 0.0408313635293558 | allantoin catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of allantoin, (2,5-dioxo-4-imidazolidinyl)urea. [GOC:mah, ISBN:[PHONE]]
46 | GO:0006101 | 0.0408313635293558 | citrate metabolic process | biological_process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. [ISBN:[PHONE]]
46 | GO:0006824 | 0.0408313635293558 | cobalt ion transport | biological_process | The directed movement of cobalt (Co) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
46 | GO:0008614 | 0.0408313635293558 | pyridoxine metabolic process | biological_process | The chemical reactions and pathways involving pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin [NAME], and are efficiently converted to the biologically active form of vitamin [NAME], pyridoxal phosphate. [CHEBI:16709, GOC:curators]
46 | GO:0008615 | 0.0408313635293558 | pyridoxine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. [GOC:ai]
46 | GO:0010160 | 0.0408313635293558 | formation of organ boundary | biological_process | The regionalization process that specifies organ primordium boundaries resulting in a restriction of organogenesis to a limited spatial domain and keeping the organ separate from surrounding tissues. [GOC:dph, GOC:isa_complete, PMID:9611175]
46 | GO:0010199 | 0.0408313635293558 | organ boundary specification between lateral organs and the meristem | biological_process | The process in which boundaries between lateral organs and the meristem is established and maintained. [PMID:12068116]
46 | GO:0010201 | 0.0408313635293558 | response to continuous far red light stimulus by the high-irradiance response system | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence. [GOC:mtg_far_red, GOC:sm]
46 | GO:0042754 | 0.0408313635293558 | negative regulation of circadian rhythm | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
46 | GO:0042816 | 0.0408313635293558 | vitamin B6 metabolic process | biological_process | The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
46 | GO:0042819 | 0.0408313635293558 | vitamin [NAME] biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
46 | GO:0043605 | 0.0408313635293558 | cellular amide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group. [CHEBI:32988]
46 | GO:0048859 | 0.0408313635293558 | formation of anatomical boundary | biological_process | The process in which the limits of an anatomical structure are generated. An anatomical structure is any biological entity that occupies space and is distinguished from its surroundings. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome. [GO_REF:0000021, GOC:mtg_15jun06]
46 | GO:0051365 | 0.0408313635293558 | cellular response to potassium ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions. [GOC:sm]
46 | GO:0070542 | 0.0408313635293558 | response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [CHEBI:35366, GOC:lp]
46 | GO:0071216 | 0.0408313635293558 | cellular response to biotic stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:mah]
46 | GO:0071398 | 0.0408313635293558 | cellular response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [GOC:mah]
46 | GO:1901016 | 0.0408313635293558 | regulation of potassium ion transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of potassium ion transmembrane transporter activity. [GOC:BHF, GOC:TermGenie]
46 | GO:1901379 | 0.0408313635293558 | regulation of potassium ion transmembrane transport | biological_process | Any process that modulates the frequency, rate or extent of potassium ion transmembrane transport. [GOC:BHF, GOC:TermGenie]
46 | GO:1901979 | 0.0408313635293558 | regulation of inward rectifier potassium channel activity | biological_process | Any process that modulates the frequency, rate or extent of inward rectifier potassium channel activity. [GOC:TermGenie, PMID:23449501]
46 | GO:2001257 | 0.0408313635293558 | regulation of cation channel activity | biological_process | Any process that modulates the frequency, rate or extent of cation channel activity. [GOC:BHF]
46 | GO:0043603 | 0.0419479998780728 | cellular amide metabolic process | biological_process | The chemical reactions and pathways involving an amide, any derivative of an oxoacid in which an acidic hydroxy group has been replaced by an amino or substituted amino group, as carried out by individual cells. [CHEBI:32988]
46 | GO:0010087 | 0.0428213967461069 | [NAME] xylem histogenesis | biological_process | The process whose specific outcome is the progression of phloem and/or xylem over time, from formation to the mature structure. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tb]
46 | GO:0006869 | 0.045712256159773 | lipid transport | biological_process | The directed movement of lipids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Lipids are compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [ISBN:[PHONE]]
46 | GO:0016144 | 0.0466944259955375 | S-glycoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
46 | GO:0019758 | 0.0466944259955375 | glycosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
46 | GO:0019761 | 0.0466944259955375 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
46 | GO:0000038 | 0.0469119652207977 | very long-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:hjd]
46 | GO:0033993 | 0.0484881067999135 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
47 | GO:0010025 | 0.00321827379479462 | wax biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of wax, which includes C16 and C18 fatty acids. [ISBN:[PHONE]]
47 | GO:0006148 | 0.0110329389191427 | inosine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs. [GOC:go_curators]
47 | GO:0007043 | 0.0110329389191427 | cell-cell junction assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a junction between cells. [GOC:ai]
47 | GO:0009747 | 0.0110329389191427 | hexokinase-dependent signaling | biological_process | A series of molecular signals mediated by hexose and dependent on the detection of hexokinase. [GOC:mah, GOC:sm]
47 | GO:0010353 | 0.0110329389191427 | response to trehalose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a trehalose stimulus. [PMID:17031512]
47 | GO:0010896 | 0.0110329389191427 | regulation of triglyceride catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of triglyceride. [GOC:rn, GOC:tb]
47 | GO:0046102 | 0.0110329389191427 | inosine metabolic process | biological_process | The chemical reactions and pathways involving inosine, hypoxanthine riboside, a nucleoside found free but not in combination in nucleic acids except in the anticodons of some tRNAs. [GOC:go_curators]
47 | GO:0060148 | 0.0110329389191427 | positive regulation of posttranscriptional gene silencing | biological_process | Any process that increases the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
47 | GO:0080058 | 0.0110329389191427 | protein deglutathionylation | biological_process | The protein modification process in which a glutathione molecule is removed from a protein amino acid by breaking a disulfide linkage. [GOC:tb]
47 | GO:0080151 | 0.0110329389191427 | positive regulation of salicylic acid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of salicylic acid mediated signal transduction. [PMID:20181750]
47 | GO:0090207 | 0.0110329389191427 | regulation of triglyceride metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving triglyceride, any triester of glycerol. [GOC:dph, GOC:sl, GOC:tb]
47 | GO:0044403 | 0.013908840659011 | symbiosis, encompassing mutualism through parasitism | biological_process | An interaction between two organisms living together in more or less intimate association. The term host is usually used for the larger (macro) of the two members of a symbiosis. The smaller (micro) member is called the symbiont organism. Microscopic symbionts are often referred to as endosymbionts. The various forms of symbiosis include parasitism, in which the association is disadvantageous or destructive to one of the organisms; mutualism, in which the association is advantageous, or often necessary to one or both and not harmful to either; and commensalism, in which one member of the association benefits while the other is not affected. However, mutualism, parasitism, and commensalism are often not discrete categories of interactions and should rather be perceived as a continuum of interaction ranging from parasitism to mutualism. In fact, the direction of a symbiotic interaction can change during the lifetime of the symbionts due to developmental changes as well as changes in the biotic/abiotic environment in which the interaction occurs. [GOC:cc, http://www.free-definition.com]
47 | GO:0051701 | 0.013908840659011 | interaction with host | biological_process | An interaction between two organisms living together in more or less intimate association. The term host is used for the larger (macro) of the two members of a symbiosis; the various forms of symbiosis include parasitism, commensalism and mutualism. [GOC:cc]
47 | GO:0044419 | 0.0147417011735072 | interspecies interaction between organisms | biological_process | Any process in which an organism has an effect on an organism of a different species. [GOC:cc]
47 | GO:0016458 | 0.0150754423275611 | gene silencing | biological_process | Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. [GOC:dph, GOC:jid, GOC:tb]
47 | GO:0010605 | 0.0207785776020773 | negative regulation of macromolecule metabolic process | biological_process | Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
47 | GO:0009744 | 0.0218164087231672 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
47 | GO:0034285 | 0.0218164087231672 | response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:sart]
47 | GO:0000710 | 0.0219458970534721 | meiotic mismatch repair | biological_process | A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules. Correction of the mismatch can result in non-Mendelian segregation of alleles following meiosis. [GOC:elh, PMID:10357855]
47 | GO:0006154 | 0.0219458970534721 | adenosine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. [GOC:go_curators]
47 | GO:0006887 | 0.0219458970534721 | exocytosis | biological_process | A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process in which most molecules are secreted from eukaryotic cells. [GOC:mah, ISBN:[PHONE]]
47 | GO:0006904 | 0.0219458970534721 | vesicle docking involved in exocytosis | biological_process | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. [GOC:jid]
47 | GO:0009757 | 0.0219458970534721 | hexose mediated signaling | biological_process | A series of molecular signals mediated by the detection of hexose. [GOC:sm]
47 | GO:0010107 | 0.0219458970534721 | potassium ion import | biological_process | The directed movement of potassium ions into a cell or organelle. [GOC:sm]
47 | GO:0015700 | 0.0219458970534721 | arsenite transport | biological_process | The directed movement of arsenite into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
47 | GO:0015712 | 0.0219458970534721 | hexose phosphate transport | biological_process | The directed movement of hexose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
47 | GO:0015760 | 0.0219458970534721 | glucose-6-phosphate transport | biological_process | The directed movement of glucose-6-phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Glucose-6-phosphate is a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
47 | GO:0018027 | 0.0219458970534721 | peptidyl-lysine dimethylation | biological_process | The methylation of peptidyl-lysine to form peptidyl-N6,N6-dimethyl-L-lysine. [RESID:AA0075]
47 | GO:0019433 | 0.0219458970534721 | triglyceride catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a triglyceride, any triester of glycerol. [ISBN:[PHONE]]
47 | GO:0022406 | 0.0219458970534721 | membrane docking | biological_process | The initial attachment of a membrane or protein to a target membrane. Docking requires only that the proteins come close enough to interact and adhere. [GOC:isa_complete]
47 | GO:0034329 | 0.0219458970534721 | cell junction assembly | biological_process | A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a cell junction. [GOC:mah]
47 | GO:0036123 | 0.0219458970534721 | histone H3-K9 dimethylation | biological_process | The modification of histone H3 by addition of two methyl groups to lysine at position 9 of the histone. [GOC:vw]
47 | GO:0043570 | 0.0219458970534721 | maintenance of DNA repeat elements | biological_process | Any process involved in sustaining the fidelity and copy number of DNA repeat elements. [GOC:jl]
47 | GO:0046461 | 0.0219458970534721 | neutral lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity. [GOC:ai]
47 | GO:0046464 | 0.0219458970534721 | acylglycerol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids. [GOC:ai]
47 | GO:0046503 | 0.0219458970534721 | glycerolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycerolipids, any lipid with a glycerol backbone. [GOC:ai]
47 | GO:0048278 | 0.0219458970534721 | vesicle docking | biological_process | The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere. [GOC:ai, GOC:jid]
47 | [NAME] | 0.0219458970534721 | regulation of posttranscriptional gene silencing | biological_process | Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
47 | GO:1900109 | 0.0219458970534721 | regulation of histone H3-K9 dimethylation | biological_process | Any process that modulates the frequency, rate or extent of histone H3-K9 dimethylation. [GOC:TermGenie, GOC:vw]
47 | GO:0009411 | 0.0265103537781823 | response to UV | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:hb]
47 | GO:0009892 | 0.027939942175123 | negative regulation of metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
47 | GO:0040029 | 0.029356464574588 | regulation of gene expression, epigenetic | biological_process | Any process that modulates the frequency, rate or extent of gene expression; the process is mitotically or meiotically heritable, or is stably self-propagated in the cytoplasm of a resting cell, and does not entail a change in DNA sequence. [PMID:10521337, PMID:11498582]
47 | GO:0000018 | 0.0327401601859997 | regulation of DNA recombination | biological_process | Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. [GOC:go_curators, ISBN:[PHONE]]
47 | GO:0009643 | 0.0327401601859997 | photosynthetic acclimation | biological_process | A response to light intensity in which exposure to medium-intensity light results in increased tolerance to high-intensity light. [GOC:mah, PMID:11069694]
47 | [NAME] | 0.0327401601859997 | regulation of systemic acquired resistance | biological_process | Any process that modulates the frequency, rate or extent of systemic acquired resistance. [GOC:sm]
47 | [NAME] | 0.0327401601859997 | triose phosphate transport | biological_process | The directed movement of triose phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
47 | GO:0015791 | 0.0327401601859997 | polyol transport | biological_process | The directed movement of polyols, any polyhydric alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
47 | GO:0015798 | 0.0327401601859997 | myo-inositol transport | biological_process | The directed movement of myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms. [GOC:ai]
47 | GO:0034330 | 0.0327401601859997 | cell junction organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell junction. A cell junction is a specialized region of connection between two cells or between a cell and the extracellular matrix. [GOC:dph, GOC:jl, GOC:mah]
47 | GO:0035436 | 0.0327401601859997 | triose phosphate transmembrane transport | biological_process | The directed movement of triose phosphate across a membrane by means of some agent such as a transporter or pore. Triose phosphate is any organic three carbon compound phosphate ester. [GOC:bf, ISBN:[PHONE]]
47 | GO:0045216 | 0.0327401601859997 | cell-cell junction organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cell-cell junction. A cell-cell junction is a specialized region of connection between two cells. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
47 | GO:0045910 | 0.0327401601859997 | negative regulation of DNA recombination | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination. [GOC:go_curators]
47 | GO:0051570 | 0.0327401601859997 | regulation of histone H3-K9 methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of a methyl group to the lysine at position 9 of histone H3. [GOC:ai]
47 | GO:0051865 | 0.0327401601859997 | protein autoubiquitination | biological_process | The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink. [GOC:ai]
47 | GO:0080170 | 0.0327401601859997 | hydrogen peroxide transmembrane transport | biological_process | The process in which hydrogen peroxide is transported from one side of a membrane to the other. This process includes the actual movement of the solute, and any regulation and preparatory steps, such as reduction of the solute. [GOC:tb]
47 | GO:0032880 | 0.032881014849689 | regulation of protein localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location. [GOC:dph, GOC:mah, GOC:tb]
47 | GO:0010629 | 0.0369670758955526 | negative regulation of gene expression | biological_process | Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
47 | GO:0009615 | 0.0372890608682069 | response to virus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a virus. [GOC:hb]
47 | GO:0010033 | 0.0388095916506565 | response to organic substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus. [GOC:sm]
47 | GO:0009611 | 0.0429056998284798 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
47 | GO:0015714 | 0.0434170005231907 | phosphoenolpyruvate transport | biological_process | The directed movement of phosphoenolpyruvate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
47 | GO:0018958 | 0.0434170005231907 | phenol-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring. [CHEBI:33853, ISBN:[PHONE]]
47 | GO:0031060 | 0.0434170005231907 | regulation of histone methylation | biological_process | Any process that modulates the frequency, rate or extent of the covalent addition of methyl groups to histones. [GOC:mah]
47 | GO:0031930 | 0.0434170005231907 | mitochondria-nucleus signaling pathway | biological_process | A series of molecular signals that forms a pathway of communication from the mitochondria to the nucleus and initiates cellular changes in response to changes in mitochondrial function. [GOC:jh, PMID:15068799]
47 | GO:0043068 | 0.0434170005231907 | positive regulation of programmed cell death | biological_process | Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
47 | GO:0044000 | 0.0434170005231907 | movement in host | biological_process | The process in which an organism or its progeny spreads from one location to another within its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:cc]
47 | GO:0046085 | 0.0434170005231907 | adenosine metabolic process | biological_process | The chemical reactions and pathways involving adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. [GOC:go_curators]
47 | GO:0046189 | 0.0434170005231907 | phenol-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a phenol, any compound containing one or more hydroxyl groups directly attached to an aromatic carbon ring. [CHEBI:33853, GOC:ai]
47 | GO:0046739 | 0.0434170005231907 | spread of virus in multicellular host | biological_process | The dissemination of infectious virion particles within an infected host organism. [ISBN:[PHONE]]
47 | GO:0050994 | 0.0434170005231907 | regulation of lipid catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of lipids. [GOC:ai]
47 | GO:0051552 | 0.0434170005231907 | flavone metabolic process | biological_process | The chemical reactions and pathways involving flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone). [http://www.onelook.com]
47 | GO:0051553 | 0.0434170005231907 | flavone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavones, a class of pigmented plant compounds based on 2-phenyl-4H-1-benzopyran-4-one (2-phenylchromone). [GOC:ai]
47 | GO:0051554 | 0.0434170005231907 | [NAME] process | biological_process | The chemical reactions and pathways involving flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities. [PMID:11402179]
47 | GO:0051555 | 0.0434170005231907 | flavonol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonols, a member of a class of vascular pigments formed by consecutive oxidative processes from the flavonoid intermediates flavanones and dihydroflavonols. Flavonols are the most widespread of the flavonoids and have a wide array of physiological activities. [GOC:ai]
47 | GO:0051814 | 0.0434170005231907 | movement in other organism involved in symbiotic interaction | biological_process | The process in which an organism or its progeny spreads from one location to another within a second organism, where the two organisms are in a symbiotic interaction. [GOC:cc]
47 | GO:0052126 | 0.0434170005231907 | movement in host environment | biological_process | The directed movement of an organism or motile cell on, within or near its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
47 | GO:0052192 | 0.0434170005231907 | movement in environment of other organism involved in symbiotic interaction | biological_process | The directed movement of an organism or motile cell on, within or near a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
47 | GO:0071326 | 0.0434170005231907 | cellular response to monosaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. [GOC:mah]
47 | GO:0071331 | 0.0434170005231907 | cellular response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:mah]
47 | [NAME] | 0.0434170005231907 | regulation of salicylic acid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of salicylic acid mediated signaling pathway. [GOC:obol]
47 | GO:0009813 | 0.0446667539279306 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
47 | GO:0045087 | 0.0449086548710047 | innate immune response | biological_process | Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
47 | GO:0006955 | 0.0476802009944651 | immune response | biological_process | Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
48 | GO:0010167 | 0.000105383863603203 | response to nitrate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. [GOC:sm]
48 | GO:0015706 | 0.00142726752471039 | nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
48 | GO:0097305 | 0.0103038560252924 | response to alcohol | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
48 | GO:0010286 | 0.0103632386326958 | heat acclimation | biological_process | Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators]
48 | GO:0009061 | 0.0134314039016289 | anaerobic respiration | biological_process | The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which uses compounds other than oxygen (e.g. nitrate, sulfate) as the terminal electron acceptor. [GOC:jl, ISBN:[PHONE]]
48 | GO:0009399 | 0.0134314039016289 | nitrogen fixation | biological_process | The process in which nitrogen is taken from its relatively inert molecular form (N2) in the atmosphere and converted into nitrogen compounds useful for other chemical processes, such as ammonia, nitrate and nitrogen dioxide. [Wikipedia:Nitrogen_fixation]
48 | GO:0015855 | 0.0134314039016289 | [NAME] | biological_process | The directed movement of pyrimidine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [[NAME], GOC:ai]
48 | GO:0015857 | 0.0134314039016289 | uracil transport | biological_process | The directed movement of uracil, 2,4-dioxopyrimidine, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators]
48 | GO:0046369 | 0.0134314039016289 | galactose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactose, the aldohexose galacto-hexose. [ISBN:[PHONE]]
48 | GO:0051973 | 0.0134314039016289 | positive regulation of telomerase activity | biological_process | Any process that activates or increases the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). [GOC:ai]
48 | GO:0080051 | 0.0134314039016289 | cutin transport | biological_process | The directed movement of cutin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [NAME], which consists of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface. [PMID:17951461]
48 | GO:0009737 | 0.0154663613670472 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
48 | GO:0010106 | 0.0167114228760255 | cellular response to iron ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions. [GOC:mg]
48 | [NAME] | 0.0176325704927843 | response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:sm]
48 | GO:0009725 | 0.0179204297120234 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
48 | GO:0033993 | 0.02009763453378 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
48 | GO:0009611 | 0.0221746944061681 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
48 | GO:0006970 | 0.0239793848303981 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
48 | GO:0009830 | 0.0266845243353852 | cell wall modification involved in abscission | biological_process | A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. [GOC:dph, GOC:lr, GOC:sdb_2009, GOC:tb]
48 | GO:0010107 | 0.0266845243353852 | potassium ion import | biological_process | The directed movement of potassium ions into a cell or organelle. [GOC:sm]
48 | GO:0015908 | 0.0266845243353852 | fatty acid transport | biological_process | The directed movement of fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [GOC:ai]
48 | GO:0044277 | 0.0266845243353852 | cell wall disassembly | biological_process | A process that results in the breakdown of the cell wall. [GOC:jl]
48 | GO:0051972 | 0.0266845243353852 | regulation of telomerase activity | biological_process | Any process that modulates the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Telomerases catalyze extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence. [EC:2.-.-.-, GOC:ai]
48 | GO:0071461 | 0.0266845243353852 | cellular response to redox state | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. [GOC:mah]
48 | GO:0080140 | 0.0266845243353852 | regulation of jasmonic acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving jasmonic acid. [GOC:dhl]
48 | GO:0080141 | 0.0266845243353852 | regulation of jasmonic acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of jasmonic acid. [GOC:dhl]
48 | GO:0042542 | 0.0267110817526255 | response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl]
48 | GO:0006569 | 0.0289597440850341 | tryptophan catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:[PHONE]]
48 | GO:0046218 | 0.0289597440850341 | indolalkylamine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
48 | GO:0006826 | 0.0346072686023369 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
48 | [NAME] | 0.0346072686023369 | aromatic amino acid family catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
48 | GO:0042436 | 0.0346072686023369 | indole-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl]
48 | [NAME] | 0.0360387637390667 | cell wall organization or biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cell wall. [GOC:mah]
48 | GO:0044036 | 0.0396193526555926 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
48 | GO:0042304 | 0.0397616996324502 | regulation of fatty acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of fatty acids, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. [GOC:go_curators, GOC:jl]
48 | GO:0051775 | 0.0397616996324502 | response to redox state | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating redox state. Redox state refers to the balance of oxidized versus reduced forms of electron donors and acceptors in an organelle, cell or organ; plastoquinone, glutathione (GSH/GSSG), and nicotinamide nucleotides (NAD+/NADH and NADP+/NADPH) are among the most important. [GOC:mah, PMID:15131240, PMID:16987039]
48 | GO:0070370 | 0.0397616996324502 | cellular heat acclimation | biological_process | Any process that increases heat tolerance of a cell in response to high temperatures. [GOC:jp]
48 | GO:0045229 | 0.0409129616597456 | external encapsulating structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of external structures that lie outside the plasma membrane and surround the entire cell. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
48 | GO:0009651 | 0.0414899448037926 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
48 | GO:0006568 | 0.0470451205123852 | tryptophan metabolic process | biological_process | The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:[PHONE]]
48 | GO:0006586 | 0.0470451205123852 | indolalkylamine metabolic process | biological_process | The chemical reactions and pathways involving indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
48 | GO:0009827 | 0.0470451205123852 | plant-type cell wall modification | biological_process | The series of events leading to chemical and structural alterations of an existing cellulose and pectin-containing cell wall that can result in loosening, increased extensibility or disassembly. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
49 | GO:0009555 | 0.00050488418357925 | pollen development | biological_process | The process whose specific outcome is the progression of the pollen grain over time, from its formation to the mature structure. The process begins with the meiosis of the microsporocyte to form four haploid microspores. The nucleus of each microspore then divides by mitosis to form a two-celled organism, the pollen grain, that contains a tube cell as well as a smaller generative cell. The pollen grain is surrounded by an elaborate cell wall. In some species, the generative cell immediately divides again to give a pair of sperm cells. In most flowering plants, however this division takes place later, in the tube that develops when a pollen grain germinates. [GOC:mtg_plant, GOC:mtg_sensu, GOC:tb]
49 | GO:0042398 | 0.000527956720896728 | cellular modified amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of compounds derived from amino acids, organic acids containing one or more amino substituents. [CHEBI:25359, GOC:ai]
49 | GO:0055067 | 0.00201157496084562 | monovalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of monovalent inorganic cations within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
49 | GO:0010091 | 0.00283039325640436 | trichome branching | biological_process | Any process involved in the formation of branches in plant hair cells. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
49 | GO:0006766 | 0.00300804136050625 | vitamin metabolic process | biological_process | The chemical reactions and pathways involving vitamins. Vitamin is a general term for a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. Vitamins may be water-soluble or fat-soluble and usually serve as components of coenzyme systems. [GOC:ai]
49 | GO:0006598 | 0.00544379471136549 | polyamine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of polyamines, any organic compound containing two or more amino groups. [ISBN:[PHONE]]
49 | GO:0006621 | 0.00623600895428079 | protein retention in ER lumen | biological_process | The retention in the endoplasmic reticulum (ER) lumen of soluble resident proteins. Sorting receptors retrieve proteins with ER localization signals, such as KDEL and HDEL sequences or some transmembrane domains, that have escaped to the cis-Golgi network and return them to the ER. Abnormally folded proteins and unassembled subunits are also selectively retained in the ER. [ISBN:[PHONE], PMID:12972550]
49 | GO:0006792 | 0.00623600895428079 | regulation of sulfur utilization | biological_process | Any process that modulates the frequency, rate or extent of sulfur utilization. [GOC:go_curators]
49 | GO:0010438 | 0.00623600895428079 | cellular response to sulfur starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfur. [PMID:17420480]
49 | GO:0046244 | 0.00623600895428079 | salicylic acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. [GOC:ai]
49 | GO:0046274 | 0.00623600895428079 | lignin catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lignins, a class of polymers of phenylpropanoid units. [GOC:ai]
49 | GO:2000021 | 0.00623600895428079 | regulation of ion homeostasis | biological_process | Any process that modulates the frequency, rate or extent of ion homeostasis. [GOC:obol]
49 | GO:0030048 | 0.00738435251706666 | [NAME]-based movement | biological_process | Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins. [GOC:BHF, GOC:mah]
49 | GO:0009108 | 0.00849639842929904 | coenzyme biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [GOC:ai]
49 | GO:0009106 | 0.00882684538187234 | lipoate metabolic process | biological_process | The chemical reactions and pathways involving lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. [GOC:ai, ISBN:[PHONE]]
49 | GO:0009804 | 0.011206272489574 | [NAME] process | biological_process | The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
49 | GO:0009805 | 0.011206272489574 | coumarin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
49 | GO:0006771 | 0.0124341211645097 | [NAME] process | biological_process | The chemical reactions and pathways involving riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
49 | GO:0006883 | 0.0124341211645097 | cellular sodium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of sodium ions at the level of a cell. [GOC:ai, GOC:mah]
49 | GO:0009231 | 0.0124341211645097 | riboflavin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of riboflavin (vitamin B2), the precursor for the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD). [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
49 | GO:0009819 | 0.0124341211645097 | drought recovery | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of prolonged deprivation of water that restores that organism to a normal (non-stressed) condition. [GOC:lr]
49 | GO:0042727 | 0.0124341211645097 | flavin-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. [CHEBI:30527, GOC:jl, GOC:mah]
49 | GO:0055078 | 0.0124341211645097 | sodium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of sodium ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
49 | GO:0006546 | 0.0129320741001503 | glycine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycine, aminoethanoic acid. [GOC:go_curators]
49 | GO:0009071 | 0.0138357501646773 | [NAME] acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
49 | GO:0016049 | 0.0138392427296231 | cell growth | biological_process | The process in which a cell irreversibly increases in size over time by accretion and biosynthetic production of matter similar to that already present. [GOC:ai]
49 | GO:0006544 | 0.0157228851228911 | glycine metabolic process | biological_process | The chemical reactions and pathways involving glycine, aminoethanoic acid. [GOC:go_curators]
49 | GO:0040007 | 0.0158152750407891 | growth | biological_process | The increase in size or mass of an entire organism, a part of an organism or a cell. [GOC:bf, GOC:ma]
49 | GO:0009963 | 0.017714077013316 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
49 | GO:0006885 | 0.0185945609077617 | regulation of pH | biological_process | Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell. [GOC:dph, GOC:go_curators, GOC:tb]
49 | GO:0030007 | 0.0185945609077617 | cellular potassium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of potassium ions at the level of a cell. [GOC:mah]
49 | GO:0042726 | 0.0185945609077617 | flavin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. [CHEBI:30527, GOC:jl, GOC:mah]
49 | GO:0080027 | 0.0185945609077617 | response to herbivore | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore. [PMID:18987211]
49 | GO:0009072 | 0.0214947266183613 | aromatic amino acid family metabolic process | biological_process | The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
49 | GO:0060560 | 0.0240245026472483 | developmental growth involved in morphogenesis | biological_process | The increase in size or mass of an anatomical structure that contributes to the structure attaining its shape. [GOC:dph]
49 | GO:0009962 | 0.0242848315248233 | regulation of flavonoid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
49 | GO:0030004 | 0.0247175511693969 | cellular monovalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of monovalent inorganic cations at the level of a cell. [GOC:ai, GOC:mah]
49 | GO:0043266 | 0.0247175511693969 | regulation of potassium ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
49 | GO:0006636 | 0.0254635682845827 | unsaturated fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms. [GOC:mah, MetaCyc:PWY-762, MetaCyc:PWY-782]
49 | GO:0033559 | 0.0254635682845827 | unsaturated fatty acid metabolic process | biological_process | The chemical reactions and pathways involving an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms. [GOC:mah]
49 | GO:0009699 | 0.0304056130669997 | phenylpropanoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid. [GOC:jl]
49 | GO:0044550 | 0.0305924428831855 | secondary metabolite biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl]
49 | GO:0051017 | 0.0308033136501233 | actin filament bundle assembly | biological_process | The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. [GOC:ai]
49 | GO:0015994 | 0.0313091107984065 | chlorophyll metabolic process | biological_process | The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl]
49 | GO:0002229 | 0.0368520687736863 | defense response to oomycetes | biological_process | Reactions triggered in response to the presence of oomycetes that act to protect the cell or organism. [GOC:add, PMID:16497589]
49 | GO:0009396 | 0.0368520687736863 | folic acid-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of folic acid and its derivatives. [GOC:ai]
49 | GO:0010959 | 0.0368520687736863 | regulation of metal ion transport | biological_process | Any process that modulates the frequency, rate, or extent of metal ion transport. Metal ion transport is the directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb]
49 | GO:0042559 | 0.0368520687736863 | pteridine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid. [GOC:jl, ISBN:[PHONE]]
49 | GO:0006721 | 0.0381568770723205 | terpenoid metabolic process | biological_process | The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups. [ISBN:[PHONE]]
49 | GO:0009611 | 0.0381568770723205 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
49 | GO:0006778 | 0.0397751783735247 | porphyrin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
49 | GO:0033013 | 0.0397751783735247 | tetrapyrrole metabolic process | biological_process | The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
49 | GO:0048588 | 0.0405973931844608 | developmental cell growth | biological_process | The growth of a cell, where growth contributes to the progression of the cell over time from one condition to another. [GOC:go_curators, GOC:isa_complete]
49 | GO:0080167 | 0.0427698572165407 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
49 | GO:0002239 | 0.0428640356940839 | response to oomycetes | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an oomycetes. [GOC:add, PMID:16497589]
49 | GO:0009095 | 0.0428640356940839 | aromatic amino acid family biosynthetic process, prephenate pathway | biological_process | The chemical reactions and pathways resulting in the formation of phenylalanine and tyrosine from other compounds, including chorismate, via the intermediate prephenate. [GOC:mah, ISBN:[PHONE]]
49 | GO:0055075 | 0.0428640356940839 | potassium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell. [GOC:jid, GOC:mah]
49 | GO:0009695 | 0.0442431154355184 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
49 | GO:0006760 | 0.0488394323017252 | folic acid-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a folic acid-containing compound, i.e. any of a group of heterocyclic compounds based on the pteroic acid skeleton conjugated with one or more L-glutamic acid or L-glutamate units. [CHEBI:37445, GOC:ai, GOC:mah]
49 | GO:0042558 | 0.0488394323017252 | pteridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any compound containing pteridine (pyrazino(2,3-dipyrimidine)), e.g. pteroic acid, xanthopterin and folic acid. [GOC:jl, ISBN:[PHONE]]
49 | GO:0019288 | 0.0492933806247797 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
49 | GO:0019682 | 0.0492933806247797 | glyceraldehyde-3-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis. [GOC:ai, ISBN:[PHONE]]
50 | GO:0080167 | 0.00200615691279295 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
50 | GO:0010099 | 0.00440046570050928 | regulation of photomorphogenesis | biological_process | Any process that modulates the rate or extent of photomorphogenesis. [GOC:tb]
50 | GO:0018874 | 0.0102334505917041 | benzoate metabolic process | biological_process | The chemical reactions and pathways involving benzoate, the anion of benzoic acid (benzenecarboxylic acid), a fungistatic compound widely used as a food preservative; it is conjugated to glycine in the liver and excreted as hippuric acid. [ISBN:[PHONE]]
50 | GO:0035445 | 0.0102334505917041 | borate [NAME] | biological_process | The directed movement of borate across a membrane by means of some agent such as a transporter or pore. Borate is the anion (BO3)3-; boron is a group 13 element, with properties which are borderline between metals and non-metals. [CHEBI:22908, GOC:curators]
50 | GO:0046713 | 0.0102334505917041 | borate transport | biological_process | The directed movement of borate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Borate is the anion (BO3)3-; boron is a group 13 element, with properties which are borderline between metals and non-metals. [CHEBI:22908, GOC:curators, http://www.webelements.com/]
50 | GO:0051938 | 0.0102334505917041 | L-glutamate import | biological_process | The directed movement of L-glutamate, the L-enantiomer of the anion of 2-aminopentanedioic acid, into a cell or organelle. [GOC:ai, GOC:jsg, GOC:mah]
50 | GO:1901703 | 0.0102334505917041 | protein localization involved in auxin polar transport | biological_process | Any protein localization that is involved in auxin polar transport. [GOC:TermGenie, PMID:23163883]
50 | GO:0010101 | 0.0112801261778585 | post-embryonic root morphogenesis | biological_process | The process in which the anatomical structures of the post-embryonic root are generated and organized. The post-embryonic root is the root formed after the embryonic phase has been completed. [GOC:tb]
50 | GO:0010102 | 0.0112801261778585 | lateral root morphogenesis | biological_process | The process in which the anatomical structures of a lateral root are generated and organized. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators]
50 | GO:0006887 | 0.0203637974910319 | exocytosis | biological_process | A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process in which most molecules are secreted from eukaryotic cells. [GOC:mah, ISBN:[PHONE]]
50 | GO:0006904 | 0.0203637974910319 | vesicle docking involved in exocytosis | biological_process | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. [GOC:jid]
50 | GO:0008216 | 0.0203637974910319 | [NAME] process | biological_process | The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:ai]
50 | GO:0008295 | 0.0203637974910319 | spermidine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:[PHONE]]
50 | GO:0009901 | 0.0203637974910319 | anther dehiscence | biological_process | The dehiscence of an anther to release the pollen grains contained within it. [GOC:tb]
50 | GO:0010036 | 0.0203637974910319 | response to boron-containing substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a boron-containing substance stimulus. [GOC:sm]
50 | GO:0010115 | 0.0203637974910319 | regulation of abscisic acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of abscisic acid. [GOC:sm]
50 | GO:0015749 | 0.0203637974910319 | monosaccharide transport | biological_process | The directed movement of monosaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monosaccharides are the simplest carbohydrates; they are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides. [GOC:ai]
50 | GO:0022406 | 0.0203637974910319 | membrane docking | biological_process | The initial attachment of a membrane or protein to a target membrane. Docking requires only that the proteins come close enough to interact and adhere. [GOC:isa_complete]
50 | GO:0042814 | 0.0203637974910319 | monopolar cell growth | biological_process | Polarized growth from one end of a cell. [GOC:vw]
50 | GO:0043091 | 0.0203637974910319 | L-arginine import | biological_process | The directed movement of L-arginine, the L-enantiomer of 2-amino-5-guanidinopentanoic acid, into a cell or organelle. [GOC:jl, GOC:jsg, GOC:mah]
50 | GO:0043092 | 0.0203637974910319 | L-amino acid import | biological_process | The directed movement of L-enantiomer amino acids into a cell or organelle. [GOC:jl, GOC:jsg, GOC:mah]
50 | GO:0048278 | 0.0203637974910319 | vesicle docking | biological_process | The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere. [GOC:ai, GOC:jid]
50 | [NAME] | 0.0203637974910319 | positive regulation of cell division | biological_process | Any process that activates or increases the frequency, rate or extent of cell division. [GOC:ai]
50 | GO:0080086 | 0.0203637974910319 | stamen filament development | biological_process | The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen. [PMID:19139039, PO:0009067]
50 | GO:0090467 | 0.0203637974910319 | arginine import | biological_process | The directed movement of arginine into a cell or organelle. [GOC:tb]
50 | GO:1900056 | 0.0203637974910319 | negative regulation of leaf senescence | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of leaf senescence. [GOC:TermGenie]
50 | GO:1902023 | 0.0203637974910319 | L-arginine transport | biological_process | The directed movement of a L-arginine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:kmv, GOC:TermGenie, PMID:22822152]
50 | [NAME] | 0.0227162834380103 | anthocyanin-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins. [GOC:ai]
50 | GO:0009900 | 0.0303920631598263 | dehiscence | biological_process | The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it. [ISBN:[PHONE]]
50 | GO:0015813 | 0.0303920631598263 | L-glutamate transport | biological_process | The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, GOC:dph, GOC:tb]
50 | GO:0019747 | 0.0303920631598263 | regulation of isoprenoid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving isoprenoids. [GOC:go_curators]
50 | GO:1900055 | 0.0303920631598263 | regulation of leaf senescence | biological_process | Any process that modulates the frequency, rate or extent of leaf senescence. [GOC:TermGenie]
50 | GO:0009725 | 0.0334153169242385 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
50 | GO:0009813 | 0.0369808692136831 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
50 | GO:0000919 | 0.0403192600818548 | cell plate assembly | biological_process | The process of assembly, maturation, and growth of the cell plate to the cell periphery in cells that divide by cell plate formation; often involves deposition of cell wall material in and around the phragmoplast. [GOC:clt]
50 | GO:0009959 | 0.0403192600818548 | negative gravitropism | biological_process | The orientation of plant parts away from gravity. [GOC:sm]
50 | GO:0010161 | 0.0403192600818548 | red light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm]
50 | GO:0010191 | 0.0403192600818548 | mucilage metabolic process | biological_process | The chemical reactions and pathways involving mucilage, a gelatinous substance secreted by plants. [GOC:sm]
50 | GO:0010192 | 0.0403192600818548 | mucilage biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mucilage, a gelatinous substance secreted by plants. [GOC:sm]
50 | GO:0015809 | 0.0403192600818548 | arginine transport | biological_process | The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE]]
50 | GO:0015819 | 0.0403192600818548 | lysine transport | biological_process | The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
50 | GO:0031146 | 0.0403192600818548 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083]
50 | GO:0048354 | 0.0403192600818548 | mucilage biosynthetic process involved in seed coat development | biological_process | The chemical reactions and pathways resulting in the formation of mucilage that occur as part of seed coat development; mucilage is normally synthesized during seed coat development. [GOC:dph, GOC:jid, GOC:tb]
50 | GO:0048359 | 0.0403192600818548 | mucilage metabolic process involved seed coat development | biological_process | The chemical reactions and pathways involving mucilage that occur as part of seed coat development; mucilage is normally synthesized during seed coat development. [GOC:dph, GOC:jid, GOC:tb]
50 | GO:0015698 | 0.0437683589393791 | inorganic anion transport | biological_process | The directed movement of inorganic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage. [GOC:krc]
50 | GO:0010565 | 0.0444203708864912 | regulation of cellular ketone metabolic process | biological_process | Any process that modulates the chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or [NAME]. [GOC:dph, GOC:tb]
50 | GO:0046283 | 0.0444203708864912 | anthocyanin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers. [ISBN:[PHONE]]
50 | GO:0009733 | 0.0445188214922968 | response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]
50 | GO:0048527 | 0.0468917287369688 | lateral root development | biological_process | The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tb]
51 | GO:0010493 | 0.00911416693320567 | Lewis a epitope biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a Lewis a epitope, a trisaccharide (Fuc-alpha-(1->4)[Gal-beta-(1->3)]GlcNAc) characteristic of plant protein N-linked oligosaccharides. [PMID:17630273]
51 | GO:0030397 | 0.00911416693320567 | membrane disassembly | biological_process | The controlled breakdown of any cell membrane in the context of a normal process such as autophagy. [GOC:mah]
51 | GO:0036065 | 0.0181467101099767 | fucosylation | biological_process | The covalent attachment of a fucosyl group to an acceptor molecule. [CHEBI:62688, GOC:sart, PMID:19948734]
51 | GO:0070141 | 0.0181467101099767 | response to UV-A | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 400 to 500 nm. [GOC:BHF, GOC:mah]
51 | GO:0071492 | 0.0181467101099767 | cellular response to UV-A | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 400 to 500 nm. [GOC:mah]
51 | GO:0080110 | 0.0181467101099767 | sporopollenin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sporopollenin, a primary constituent of the pollen exine layer. [PMID:19218397]
51 | GO:2000652 | 0.0181467101099767 | regulation of secondary cell wall biogenesis | biological_process | Any process that modulates the frequency, rate or extent of secondary cell wall biogenesis. [GOC:obol]
51 | [NAME] | 0.0182653639229215 | anthocyanin-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins. [GOC:ai]
51 | GO:0010029 | 0.0265101981634981 | regulation of seed germination | biological_process | Any process that modulates the frequency, rate or extent of seed germination. [GOC:sm]
51 | GO:0010117 | 0.027098347589866 | photoprotection | biological_process | Protection mechanism used by plants under conditions of excess energy absorption as a consequence of the light reactions of photosynthesis. [GOC:mg]
51 | GO:0010215 | 0.027098347589866 | cellulose microfibril organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730]
51 | GO:0048830 | 0.027098347589866 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
51 | GO:0061077 | 0.027098347589866 | chaperone-mediated protein folding | biological_process | The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw]
51 | GO:0070726 | 0.027098347589866 | cell wall assembly | biological_process | The aggregation, arrangement and bonding together of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells. [GOC:mah]
51 | GO:0071486 | 0.027098347589866 | cellular response to high light intensity | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:mah]
51 | [NAME] | 0.027098347589866 | plant-type cell wall assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a cellulose- and pectin-containing cell wall. [GOC:mah]
51 | GO:0009813 | 0.0274844407596122 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
51 | GO:1900140 | 0.0301569483341244 | regulation of seedling development | biological_process | Any process that modulates the frequency, rate or extent of seedling development. [GOC:TermGenie]
51 | GO:0030198 | 0.0359697912288741 | extracellular matrix organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix. [GOC:mah]
51 | GO:0043062 | 0.0359697912288741 | extracellular structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
51 | GO:0071490 | 0.0359697912288741 | cellular response to far red light | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mah]
51 | GO:0046283 | 0.0359757636135275 | anthocyanin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving anthocyanins, any member of a group of intensely colored soluble glycosides of anthocyanidins that occur in plants. They are responsible from most of the scarlet, purple, mauve and blue coloring in higher plants, especially of flowers. [ISBN:[PHONE]]
51 | GO:0009812 | 0.0394916825323654 | [NAME] process | biological_process | The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins. [GOC:tair_curators, ISBN:[PHONE]]
51 | GO:0009873 | 0.0443449787746387 | ethylene mediated signaling pathway | biological_process | A series of molecular signals mediated by ethylene ([NAME]). [GOC:jy]
51 | GO:0006298 | 0.0447617467328157 | mismatch repair | biological_process | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:[PHONE], PMID:11687886]
51 | GO:0034644 | 0.0447617467328157 | cellular response to UV | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:mah]
51 | GO:0071484 | 0.0447617467328157 | cellular response to light intensity | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus. [GOC:mah]
51 | GO:0071491 | 0.0447617467328157 | cellular response to red light | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mah]
51 | GO:0071369 | 0.0465402054726706 | cellular response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:mah]
52 | GO:0009595 | 0.000653897032718611 | detection of biotic stimulus | biological_process | The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal. [GOC:hb]
52 | GO:0043900 | 0.00139784444653142 | regulation of multi-organism process | biological_process | Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
52 | GO:0050832 | 0.00175050888051492 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
52 | GO:0010106 | 0.00255502771347674 | cellular response to iron ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions. [GOC:mg]
52 | GO:0010310 | 0.00375029652887736 | regulation of hydrogen peroxide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. [PMID:14765119]
52 | GO:0009733 | 0.00419656365600408 | response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]
52 | GO:0043067 | 0.00419656365600408 | regulation of programmed cell death | biological_process | Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
52 | GO:1901698 | 0.00441073357830267 | response to nitrogen compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. [GOC:pr, GOC:TermGenie]
52 | GO:0009697 | 0.00507112796392412 | salicylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. [ISBN:[PHONE]]
52 | GO:0009098 | 0.00511672529582329 | leucine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai]
52 | GO:0051245 | 0.00511672529582329 | negative regulation of cellular defense response | biological_process | Any process that stops, prevents, or reduces the rate of the cellular defense response. [GOC:ai]
52 | GO:0072660 | 0.00511672529582329 | maintenance of protein location in plasma membrane | biological_process | Any process in which a protein is maintained in a specific location in the plasma membrane, and is prevented from moving elsewhere. [GOC:mah]
52 | GO:0072661 | 0.00511672529582329 | protein targeting to plasma membrane | biological_process | The process of directing proteins towards the plasma membrane; usually uses signals contained within the protein. [GOC:mah]
52 | GO:0080051 | 0.00511672529582329 | cutin transport | biological_process | The directed movement of cutin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [NAME], which consists of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface. [PMID:17951461]
52 | GO:0006826 | 0.005496953821235 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
52 | GO:0000165 | 0.0071376825843734 | MAPK cascade | biological_process | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP [NAME]-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
52 | GO:0009862 | 0.00819494789708047 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
52 | GO:0010036 | 0.0102080838102216 | response to boron-containing substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a boron-containing substance stimulus. [GOC:sm]
52 | GO:0015692 | 0.0102080838102216 | lead ion transport | biological_process | The directed movement of lead (Pb) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
52 | GO:0015976 | 0.0102080838102216 | carbon utilization | biological_process | A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism. [GOC:mah, GOC:mlg]
52 | GO:0048838 | 0.0102080838102216 | release of seed from dormancy | biological_process | The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release. [GOC:dph, GOC:jid, GOC:tb, ISBN:[PHONE]]
52 | GO:0071703 | 0.0102080838102216 | detection of organic substance | biological_process | The series of events in which an organic substance stimulus is received by a cell and converted into a molecular signal. [GOC:mah]
52 | GO:0097438 | 0.0102080838102216 | exit from dormancy | biological_process | The dormancy process that results in exit from dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
52 | GO:0009755 | 0.0115121776011078 | hormone-mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of a hormone. [GOC:sm]
52 | GO:0009867 | 0.0115606708415699 | [NAME] mediated signaling pathway | biological_process | A series of molecular signals mediated by [NAME]. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
52 | GO:0071395 | 0.0115606708415699 | cellular response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:mah]
52 | GO:0032870 | 0.0138936686822128 | cellular response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:mah]
52 | GO:0071495 | 0.0142877014716771 | cellular response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:mah]
52 | GO:0010167 | 0.014338967713995 | response to nitrate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. [GOC:sm]
52 | GO:0015706 | 0.0151103224577902 | nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
52 | GO:0046864 | 0.0152741972648281 | isoprenoid transport | biological_process | The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [GOC:ai]
52 | GO:0046865 | 0.0152741972648281 | terpenoid transport | biological_process | The directed movement of terpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Terpenoids are a class of compounds characterized by an isoprenoid chemical structure and include derivatives with various functional groups. [GOC:ai]
52 | GO:0080168 | 0.0152741972648281 | abscisic acid transport | biological_process | The directed movement of abscisic acid into, out of, within or between cells by means of some external agent such as a transporter or pore. [PMID:20133881]
52 | GO:0009723 | 0.0156199414847597 | response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:jl]
52 | GO:0010200 | 0.0190189026764614 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
52 | GO:0010583 | 0.0201015228592971 | response to cyclopentenone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. [PMID:18334669]
52 | GO:0010541 | 0.020315186816559 | acropetal auxin transport | biological_process | The unidirectional movement of auxin from the base towards the apex of an organ, including the shoot, leaf, primary root, or lateral root. [PMID:10677441]
52 | GO:0097306 | 0.0213366976544601 | cellular response to alcohol | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
52 | GO:0009617 | 0.0216041132331739 | response to bacterium | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. [GOC:hb]
52 | GO:0010363 | 0.0223056725183192 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
52 | GO:0010243 | 0.0232986040946469 | response to organic nitrogen | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. An organic nitrogen compound is formally a compound containing at least one carbon-nitrogen bond. [CHEBI:35352, PMID:9869419]
52 | GO:0080135 | 0.0232986040946469 | regulation of cellular response to stress | biological_process | Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
52 | GO:0006855 | 0.0253311730600033 | drug transmembrane transport | biological_process | The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf]
52 | GO:0010148 | 0.0253311730600033 | transpiration | biological_process | Release of water by the plant into the air as water vapor mainly through leaves. [GOC:sm, ISBN:[PHONE]]
52 | GO:0010315 | 0.0303222760303536 | auxin efflux | biological_process | The process involved in the transport of auxin out of the cell. [GOC:tair_curators]
52 | GO:0009626 | 0.030336863082945 | plant-type hypersensitive response | biological_process | The rapid, localized death of plant cells in response to invasion by a pathogen. [[NAME]]
52 | GO:0034050 | 0.030336863082945 | host programmed cell death induced by symbiont | biological_process | Cell death in a host resulting from activation of host endogenous cellular processes after direct or indirect interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). An example of direct interaction is contact with penetrating hyphae of a fungus; an example of indirect interaction is encountering symbiont-secreted molecules. [GOC:pamgo_curators]
52 | GO:0045088 | 0.0309201488819037 | regulation of innate immune response | biological_process | Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection. [GOC:ebc]
52 | GO:0050776 | 0.031509399938473 | regulation of immune response | biological_process | Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. [GOC:ai]
52 | GO:0002682 | 0.0321046109831393 | regulation of immune system process | biological_process | Any process that modulates the frequency, rate, or extent of an immune system process. [GOC:add]
52 | GO:0042538 | 0.03509412364408 | hyperosmotic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
52 | GO:0015850 | 0.0352886152058239 | organic hydroxy compound transport | biological_process | The directed movement of an organic hydroxy compound (organic alcohol) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An organic hydroxy compound is an organic compound having at least one hydroxy group attached to a carbon atom. [CHEBI:33822, GOC:ai]
52 | GO:0043069 | 0.0362112047121625 | negative regulation of programmed cell death | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
52 | GO:0009753 | 0.0377286417247545 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
52 | GO:0060548 | 0.0384864779794584 | negative regulation of cell death | biological_process | Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. [GOC:BHF, GOC:dph, GOC:tb]
52 | GO:0071396 | 0.0390433849692475 | cellular response to lipid | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:mah]
52 | GO:0042742 | 0.0417431829272634 | defense response to bacterium | biological_process | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]
52 | GO:0048440 | 0.0431970210872301 | carpel development | biological_process | The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style. [GOC:go_curators]
52 | GO:0010540 | 0.0451474773117111 | [NAME] transport | biological_process | The unidirectional movement of auxin from the apex to base of an organ, including the shoot, leaf, primary root, or lateral root. [PMID:10677441]
52 | GO:0048467 | 0.0481125925718299 | gynoecium development | biological_process | The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower. [GOC:go_curators, PO:0008062]
52 | GO:0097305 | 0.0483367586267294 | response to alcohol | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
53 | GO:0006457 | 0.000285820689892279 | protein folding | biological_process | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb]
53 | GO:0046686 | 0.00063747731108982 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
53 | GO:0071310 | 0.00108576097707316 | cellular response to organic substance | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus. [GOC:mah]
53 | GO:0009611 | 0.00122562444859848 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
53 | GO:0009695 | 0.00202866028117858 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
53 | GO:1901701 | 0.00285501649737561 | cellular response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
53 | GO:0007154 | 0.0028858001401699 | cell communication | biological_process | Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. [GOC:mah]
53 | GO:0033993 | 0.00313649076565061 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
53 | GO:0010089 | 0.0032584203220624 | xylem development | biological_process | The formation of the principal water-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
53 | GO:0034605 | 0.00343551128732679 | cellular response to heat | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:mah]
53 | [NAME] | 0.00392420183006772 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
53 | GO:0009644 | 0.00426936048464101 | response to high light intensity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:go_curators]
53 | GO:0009725 | 0.00438696893278791 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
53 | GO:0010286 | 0.00466718147485324 | heat acclimation | biological_process | Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators]
53 | GO:0009816 | 0.00725295630711175 | defense response to bacterium, incompatible interaction | biological_process | A response of an organism to a bacterium that prevents the occurrence or spread of disease. [GOC:lr]
53 | GO:0022411 | 0.00840716960338418 | cellular component disassembly | biological_process | A cellular process that results in the breakdown of a cellular component. [GOC:isa_complete]
53 | GO:0042542 | 0.00847854215706181 | response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl]
53 | GO:0042335 | 0.00963801742654119 | cuticle development | biological_process | The chemical reactions and pathways resulting in the formation of a cuticle, the outer layer of some animals and plants, which acts to prevent water loss. [ISBN:[PHONE]]
53 | GO:0007019 | 0.0100735529261065 | microtubule depolymerization | biological_process | The removal of tubulin heterodimers from one or both ends of a microtubule. [ISBN:[PHONE]]
53 | GO:0009759 | 0.0100735529261065 | indole glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [GOC:ai]
53 | GO:0015904 | 0.0100735529261065 | tetracycline transport | biological_process | The directed movement of tetracycline into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Tetracycline is a broad spectrum antibiotic that blocks binding of aminoacyl tRNA to the ribosomes of both Gram-positive and Gram-negative organisms (and those of organelles). [CHEBI:27902, GOC:curators]
53 | GO:0030397 | 0.0100735529261065 | membrane disassembly | biological_process | The controlled breakdown of any cell membrane in the context of a normal process such as autophagy. [GOC:mah]
53 | GO:0031114 | 0.0100735529261065 | regulation of microtubule depolymerization | biological_process | Any process that modulates the frequency, rate or extent of microtubule depolymerization. [GOC:mah]
53 | GO:0031117 | 0.0100735529261065 | positive regulation of microtubule depolymerization | biological_process | Any process that activates or increases the frequency, rate or extent of microtubule depolymerization. [GOC:mah]
53 | GO:0032411 | 0.0100735529261065 | positive regulation of transporter activity | biological_process | Any process that activates or increases the activity of a transporter. [GOC:mah]
53 | GO:0032414 | 0.0100735529261065 | positive regulation of ion transmembrane transporter activity | biological_process | Any process that activates or increases the activity of an ion transporter. [GOC:mah, GOC:tb]
53 | GO:0035264 | 0.0100735529261065 | multicellular organism growth | biological_process | The increase in size or mass of an entire multicellular organism, as opposed to cell growth. [GOC:bf, GOC:curators, GOC:dph, GOC:tb]
53 | GO:0040014 | 0.0100735529261065 | regulation of multicellular organism growth | biological_process | Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size. [GOC:dph, GOC:ems, GOC:tb]
53 | GO:0042891 | 0.0100735529261065 | antibiotic transport | biological_process | The directed movement of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
53 | GO:0043243 | 0.0100735529261065 | positive regulation of protein complex disassembly | biological_process | Any process that activates or increases the frequency, rate or extent of protein complex disassembly, the disaggregation of a protein complex into its constituent components. [GOC:jl]
53 | GO:0043335 | 0.0100735529261065 | protein unfolding | biological_process | The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state. [GOC:mlg]
53 | GO:0071588 | 0.0100735529261065 | hydrogen peroxide mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of hydrogen peroxide (H2O2). [GOC:mah, PMID:17043891]
53 | GO:0080186 | 0.0100735529261065 | developmental vegetative growth | biological_process | The increase in size or mass of non-reproductive plant parts. [PO:0007134]
53 | GO:1901527 | 0.0100735529261065 | abscisic acid mediated signaling pathway involved in stomatal movement | biological_process | Any abscisic acid mediated signaling pathway that is involved in stomatal movement. [GOC:TermGenie, PMID:22730405]
53 | [NAME] | 0.0100735529261065 | hydrogen peroxide mediated signaling pathway involved in stomatal movement | biological_process | Any hydrogen peroxide mediated signaling pathway that is involved in stomatal movement. [GOC:TermGenie]
53 | GO:1901529 | 0.0100735529261065 | positive regulation of anion channel activity | biological_process | Any process that activates or increases the frequency, rate or extent of anion channel activity. [GOC:TermGenie]
53 | GO:1901881 | 0.0100735529261065 | positive regulation of protein depolymerization | biological_process | Any process that activates or increases the frequency, rate or extent of protein depolymerization. [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:12032137]
53 | GO:1901998 | 0.0100735529261065 | [NAME] | biological_process | The directed movement of a toxin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:TermGenie, PMID:17118486]
53 | GO:0010118 | 0.0108692365974648 | stomatal movement | biological_process | The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata). [GOC:sm]
53 | GO:0007165 | 0.0109065779954917 | signal transduction | biological_process | The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell. [GOC:go_curators, GOC:mtg_signaling_feb11]
53 | GO:0000038 | 0.0123231977512192 | very long-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:hjd]
53 | GO:0044700 | 0.0148075237695611 | single organism signaling | biological_process | A signaling process occurring within a single organism. [GOC:jl]
53 | GO:0023052 | 0.0149907348106011 | signaling | biological_process | The entirety of a process in which information is transmitted within a biological system. This process begins with an active signal and ends when a cellular response has been triggered. [GOC:mtg_signal, GOC:mtg_signaling_feb11, GOC:signaling]
53 | GO:0044036 | 0.0155722868197718 | cell wall macromolecule metabolic process | biological_process | The chemical reactions and pathways involving macromolecules forming, or destined to form, part of the cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis. [GOC:jl, GOC:mah]
53 | GO:0097305 | 0.0187920433625241 | response to alcohol | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
53 | GO:0031668 | 0.0190528140084779 | cellular response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:mah]
53 | GO:0071496 | 0.0196761468752744 | cellular response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:mah]
53 | GO:0006101 | 0.0200472241503446 | citrate metabolic process | biological_process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. [ISBN:[PHONE]]
53 | GO:0009819 | 0.0200472241503446 | drought recovery | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of prolonged deprivation of water that restores that organism to a normal (non-stressed) condition. [GOC:lr]
53 | GO:0030002 | 0.0200472241503446 | cellular anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of anions at the level of a cell. [GOC:ceb, GOC:mah]
53 | GO:0030643 | 0.0200472241503446 | cellular phosphate ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of phosphate ions at the level of a cell. [GOC:mah]
53 | GO:0051365 | 0.0200472241503446 | cellular response to potassium ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions. [GOC:sm]
53 | GO:0051446 | 0.0200472241503446 | positive regulation of meiotic cell cycle | biological_process | Any process that activates or increases the frequency, rate or extent of progression through the meiotic cell cycle. [GOC:ai, GOC:dph, GOC:tb]
53 | GO:0070542 | 0.0200472241503446 | response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [CHEBI:35366, GOC:lp]
53 | GO:0071398 | 0.0200472241503446 | cellular response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [GOC:mah]
53 | GO:0072502 | 0.0200472241503446 | cellular trivalent inorganic anion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of trivalent inorganic anions at the level of a cell. [GOC:mah]
53 | GO:2000652 | 0.0200472241503446 | regulation of secondary cell wall biogenesis | biological_process | Any process that modulates the frequency, rate or extent of secondary cell wall biogenesis. [GOC:obol]
53 | GO:0009991 | 0.0222955252933147 | response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:go_curators]
53 | GO:0052542 | 0.0277911872652587 | defense response by callose deposition | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
53 | GO:0018208 | 0.0298226051692338 | peptidyl-proline modification | biological_process | The modification of peptidyl-proline. [GOC:go_curators]
53 | GO:0018401 | 0.0299219882066015 | peptidyl-proline hydroxylation to 4-hydroxy-L-proline | biological_process | The modification of peptidyl-proline to form 4-hydroxy-L-proline; catalyzed by procollagen-proline,2-oxoglutarate-4-dioxygenase. [RESID:AA0030]
53 | GO:0019471 | 0.0299219882066015 | 4-hydroxyproline metabolic process | biological_process | The chemical reactions and pathways involving 4-hydroxyproline, C5H9NO3, a derivative of the amino acid proline. The presence of hydroxyproline is essential to produce stable triple helical tropocollagen, hence the problems caused by ascorbate deficiency in scurvy. This unusual amino acid is also present in considerable amounts in the major glycoprotein of primary plant cell walls. [CHEBI:20392, GOC:ai]
53 | GO:0019511 | 0.0299219882066015 | peptidyl-proline hydroxylation | biological_process | The hydroxylation of peptidyl-proline to form peptidyl-hydroxyproline. [GOC:mah]
53 | GO:0031110 | 0.0299219882066015 | regulation of microtubule polymerization or depolymerization | biological_process | Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule. [GOC:mah]
53 | GO:0031112 | 0.0299219882066015 | positive regulation of microtubule polymerization or depolymerization | biological_process | Any process that activates or increases the frequency, rate or extent of microtubule polymerization or depolymerization. [GOC:mah]
53 | GO:0032886 | 0.0299219882066015 | regulation of microtubule-based process | biological_process | Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton. [GOC:mah]
53 | GO:0042343 | 0.0299219882066015 | indole glucosinolate metabolic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates. Glucosinolates are sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan; indoles are biologically active substances based on 2,3-benzopyrrole, formed during the catabolism of tryptophan. [http://www.onelook.com/]
53 | GO:0048768 | 0.0299219882066015 | [NAME] cell tip growth | biological_process | Localized growth of a plant root hair tip by extension of the cell wall. [GOC:jid, GOC:ki, PMID:12468740]
53 | GO:0048830 | 0.0299219882066015 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
53 | GO:0051050 | 0.0299219882066015 | positive regulation of transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
53 | GO:0070370 | 0.0299219882066015 | cellular heat acclimation | biological_process | Any process that increases heat tolerance of a cell in response to high temperatures. [GOC:jp]
53 | GO:0070507 | 0.0299219882066015 | regulation of microtubule cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
53 | GO:0071456 | 0.0299219882066015 | cellular response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:mah]
53 | GO:0071731 | 0.0299219882066015 | response to nitric oxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf]
53 | GO:0071732 | 0.0299219882066015 | cellular response to nitric oxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf]
53 | GO:0009863 | 0.0305627374081764 | salicylic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by salicylic acid. [GOC:jy]
53 | GO:0071446 | 0.0305627374081764 | cellular response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:mah]
53 | GO:0009737 | 0.0340755965348883 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
53 | GO:0006102 | 0.0396988102738889 | isocitrate metabolic process | biological_process | The chemical reactions and pathways involving isocitrate, the anion of isocitric acid, 1-hydroxy-1,2,3-propanetricarboxylic acid. Isocitrate is an important intermediate in the TCA cycle and the glycoxylate cycle. [ISBN:[PHONE]]
53 | GO:0009682 | 0.0396988102738889 | induced systemic resistance | biological_process | A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. [PMID:10234273]
53 | GO:0036294 | 0.0396988102738889 | cellular response to decreased oxygen levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen. [GOC:al]
53 | GO:0071453 | 0.0396988102738889 | cellular response to oxygen levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. [GOC:mah]
53 | GO:0072350 | 0.0396988102738889 | tricarboxylic acid metabolic process | biological_process | The chemical reactions and pathways involving dicarboxylic acids, any organic acid containing three carboxyl (COOH) groups or anions (COO-). [CHEBI:27093, GOC:mah]
53 | [NAME] | 0.0396988102738889 | cellular response to reactive nitrogen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive nitrogen species stimulus. [GOC:sl, GOC:TermGenie, PMID:22504638]
53 | GO:0006631 | 0.0401581680284505 | fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:[PHONE]]
53 | GO:0009734 | 0.0408155031162662 | auxin mediated signaling pathway | biological_process | The series of molecular signals generated in response to detection of auxin. [GOC:mah, GOC:sm]
53 | GO:0009733 | 0.0423994973413255 | response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]
53 | GO:0048527 | 0.045578819878668 | lateral root development | biological_process | The process whose specific outcome is the progression of the lateral root over time, from its formation to the mature structure. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tb]
53 | GO:0006952 | 0.0469456780992545 | defense response | biological_process | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]
53 | GO:0034976 | 0.0475563404243178 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
53 | [NAME] | 0.0480339965418915 | cellular modified amino acid metabolic process | biological_process | The chemical reactions and pathways involving compounds derived from amino acids, organic acids containing one or more amino substituents. [CHEBI:25359, GOC:ai]
53 | GO:0033037 | 0.0480339965418915 | polysaccharide localization | biological_process | Any process in which a polysaccharide is transported to, or maintained in, a specific location. [GOC:mah]
53 | GO:0052545 | 0.0480339965418915 | callose localization | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location. [NAME] is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06, http://www.onelook.com]
53 | GO:0033554 | 0.0485409772160891 | cellular response to stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
53 | GO:0010252 | 0.0493786462664957 | auxin homeostasis | biological_process | A homeostatic process that maintains an endogenous steady-state concentration of primary auxin, or constant level of auxin in a biological system, by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation. [http://diss-epsilon.slu.se/archive/00000215/]
53 | GO:0031109 | 0.0493786462664957 | microtubule polymerization or depolymerization | biological_process | Assembly or disassembly of microtubules by the addition or removal of tubulin heterodimers from a microtubule. [GOC:mah]
53 | GO:0032957 | 0.0493786462664957 | inositol trisphosphate metabolic process | biological_process | The chemical reactions and pathways involving myo-inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached. [CHEBI:24540, CHEBI:24848, GOC:mah]
53 | GO:1901879 | 0.0493786462664957 | regulation of protein depolymerization | biological_process | Any process that modulates the frequency, rate or extent of protein depolymerization. [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:12032137]
54 | GO:0006792 | 0.00287815797891856 | regulation of sulfur utilization | biological_process | Any process that modulates the frequency, rate or extent of sulfur utilization. [GOC:go_curators]
54 | GO:0010438 | 0.00287815797891856 | cellular response to sulfur starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfur. [PMID:17420480]
54 | GO:0010493 | 0.00287815797891856 | Lewis a epitope biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a Lewis a epitope, a trisaccharide (Fuc-alpha-(1->4)[Gal-beta-(1->3)]GlcNAc) characteristic of plant protein N-linked oligosaccharides. [PMID:17630273]
54 | GO:0009737 | 0.00435865779471221 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
54 | GO:0016973 | 0.00574849112403434 | poly(A)+ mRNA export from nucleus | biological_process | The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm. [GOC:ai]
54 | GO:0000103 | 0.0143127415682806 | sulfate assimilation | biological_process | The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. [GOC:jl]
54 | GO:1901606 | 0.015930841046497 | alpha-amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of an alpha-amino acid. [GOC:TermGenie]
54 | GO:0009063 | 0.0168317290103061 | cellular amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents. [GOC:ai]
54 | GO:0016143 | 0.0196624740022708 | S-glycoside metabolic process | biological_process | The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
54 | GO:0019757 | 0.0196624740022708 | glycosinolate metabolic process | biological_process | The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
54 | GO:0019760 | 0.0196624740022708 | glucosinolate metabolic process | biological_process | The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. [CHEBI:24279, GOC:curators]
54 | GO:0019252 | 0.0237265195367183 | starch biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai]
54 | GO:0000271 | 0.0254387703171843 | polysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, GOC:go_curators]
54 | GO:0006949 | 0.025623403867029 | syncytium formation | biological_process | The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division. [ISBN:[PHONE]]
54 | GO:0009072 | 0.0304124288059178 | aromatic amino acid family metabolic process | biological_process | The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
54 | GO:0006098 | 0.0310002164729149 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
54 | GO:0006740 | 0.0310002164729149 | NADPH regeneration | biological_process | A metabolic process that generates a pool of NADPH by the reduction of NADP+. [GOC:mah]
54 | GO:0006790 | 0.0320140580829572 | sulfur compound metabolic process | biological_process | The chemical reactions and pathways involving the nonmetallic element sulfur or compounds that contain sulfur, such as the amino acids methionine and cysteine or the tripeptide glutathione. [GOC:ai]
54 | GO:0006739 | 0.0321895020201402 | NADP metabolic process | biological_process | The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
54 | GO:0046496 | 0.0327909439624291 | [NAME] process | biological_process | The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [ISBN:[PHONE]]
54 | GO:0019362 | 0.0333968815708478 | [NAME] process | biological_process | The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl]
54 | GO:0072524 | 0.0346221330885602 | pyridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. [CHEBI:26421, GOC:mah]
54 | GO:0005982 | 0.0390480893722189 | starch metabolic process | biological_process | The chemical reactions and pathways involving starch, the most important reserve polysaccharide in plants. It is a glucan consisting of two components, amylose and amylopectin, which are both glucose homopolymers. Starch is synthesized as a temporary storage form of carbon and can be catabolized to produce sucrose. [ISBN:[PHONE]]
54 | GO:0005976 | 0.0420641098118396 | polysaccharide metabolic process | biological_process | The chemical reactions and pathways involving a polysaccharide, a polymer of many (typically more than 10) monosaccharide residues linked glycosidically. [CHEBI:18154, ISBN:[PHONE]]
54 | GO:0010304 | 0.0423598083176494 | PSII associated light-harvesting complex II catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. [GOC:mah, PMID:16157880]
54 | GO:0009269 | 0.0451226747146071 | response to desiccation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. [GOC:jl]
55 | GO:0009220 | 2.75560387028506e-11 | pyrimidine ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
55 | GO:0001510 | 4.46849474817052e-10 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
55 | GO:0006626 | 4.41847889501309e-05 | protein targeting to mitochondrion | biological_process | The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. [GOC:mcc, ISBN:[PHONE]]
55 | GO:0006606 | 0.000128421700288014 | protein import into nucleus | biological_process | The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl]
55 | GO:0009408 | 0.000725426599545656 | response to heat | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr]
55 | GO:0009909 | 0.000786772924360572 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
55 | GO:0006094 | 0.0014360127060927 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
55 | GO:0006457 | 0.00150063813183479 | protein folding | biological_process | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb]
55 | GO:0010440 | 0.00167099519522143 | stomatal lineage progression | biological_process | The process in which an unspecialized epidermal cell progresses through a series of divisions that culminate in the production of a stomatal complex. [GOC:[NAME], GOC:tb]
55 | GO:0034968 | 0.00180719623044559 | histone lysine methylation | biological_process | The modification of a histone by addition of a methyl group to a lysine residue. [GOC:mah]
55 | GO:0016553 | 0.00258793814995476 | base conversion or substitution editing | biological_process | Any base modification or substitution events that result in alterations in the coding potential or structural properties of RNAs as a result of changes in the base-pairing properties of the modified ribonucleoside(s). [PMID:11092837]
55 | GO:0071333 | 0.00258793814995476 | cellular response to glucose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. [GOC:mah]
55 | GO:0045736 | 0.00358067556096239 | negative regulation of cyclin-dependent protein serine/threonine kinase activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cyclin-dependent protein serine/threonine kinase activity. [GOC:go_curators, GOC:pr]
55 | GO:0009560 | 0.0041681732494712 | embryo sac egg cell differentiation | biological_process | The process in which an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu]
55 | GO:0034660 | 0.00454736667594468 | [NAME] process | biological_process | The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs). [GOC:mah]
55 | GO:0007020 | 0.00498753611689164 | microtubule nucleation | biological_process | The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. [NAME] nucleation usually occurs from a specific site within a cell. [ISBN:[PHONE]]
55 | GO:0072522 | 0.00498753611689164 | purine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a purine-containing compound, i.e. any compound that contains purine or a formal derivative thereof. [CHEBI:26401, GOC:mah]
55 | GO:0009658 | 0.00515099631469449 | chloroplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid]
55 | GO:0046686 | 0.00541580603554728 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
55 | GO:0000741 | 0.0058722492877556 | karyogamy | biological_process | The creation of a single nucleus from multiple nuclei as a result of fusing the lipid bilayers that surround each nuclei. [GOC:elh]
55 | GO:0019288 | 0.00604372937473213 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
55 | GO:0034976 | 0.00705295380410345 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
55 | GO:0006265 | 0.00829246041138661 | DNA topological change | biological_process | The process in which a transformation is induced in the topological structure of a double-stranded DNA helix, resulting in a change in linking number. [ISBN:071673706X, ISBN:[PHONE]]
55 | GO:0006730 | 0.00829246041138661 | one-carbon metabolic process | biological_process | The chemical reactions and pathways involving the transfer of one-carbon units in various oxidation states. [GOC:hjd, GOC:mah, GOC:pde]
55 | GO:0006461 | 0.00993237100439607 | protein complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a protein complex. [GOC:ai]
55 | GO:0034622 | 0.0110747873995299 | cellular macromolecular complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of macromolecules to form a complex, carried out at the cellular level. [GOC:mah]
55 | GO:0006412 | 0.011185542146502 | translation | biological_process | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]
55 | GO:0000375 | 0.0112544152241418 | RNA splicing, via transesterification reactions | biological_process | Splicing of RNA via a series of two transesterification reactions. [GOC:krc]
55 | GO:0000377 | 0.0112544152241418 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process | Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure. [GOC:krc, PMID:11377794]
55 | GO:0006399 | 0.0112544152241418 | tRNA metabolic process | biological_process | The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established. [ISBN:[PHONE]]
55 | GO:0006418 | 0.0129421102253413 | tRNA aminoacylation for protein translation | biological_process | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma]
55 | GO:0043038 | 0.0129421102253413 | amino acid activation | biological_process | The modification of an amino acid to an active form, for incorporation into a peptide, protein or other macromolecule. [GOC:jl]
55 | GO:0043039 | 0.0129421102253413 | tRNA aminoacylation | biological_process | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. [GOC:ma, GOC:mah, MetaCyc:Aminoacyl-tRNAs]
55 | GO:0030163 | 0.0140789998932927 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah]
55 | GO:0006396 | 0.0153667892354411 | RNA processing | biological_process | Any process involved in the conversion of one or more primary [NAME] transcripts into one or more mature RNA molecules. [GOC:mah]
55 | GO:0006406 | 0.0157994525669096 | mRNA export from nucleus | biological_process | The directed movement of mRNA from the nucleus to the cytoplasm. [GOC:ma]
55 | GO:0051028 | 0.0157994525669096 | mRNA transport | biological_process | The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
55 | GO:0007264 | 0.0167431465100762 | small GTPase mediated signal transduction | biological_process | Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals. [GOC:mah]
55 | GO:0007265 | 0.0167431465100762 | [NAME] protein signal transduction | biological_process | A series of molecular signals within the cell that are mediated by a member of the [NAME] superfamily of proteins switching to a GTP-bound active state. [GOC:bf]
55 | GO:0032318 | 0.0167431465100762 | regulation of [NAME] activity | biological_process | Any process that modulates the activity of a GTPase of the [NAME] superfamily. [GOC:mah]
55 | GO:0032320 | 0.0167431465100762 | positive regulation of [NAME] activity | biological_process | Any process that activates or increases the activity of a GTPase of the [NAME] superfamily. [GOC:mah]
55 | GO:0046578 | 0.0167431465100762 | regulation of [NAME] protein signal transduction | biological_process | Any process that modulates the frequency, rate or extent of [NAME] protein signal transduction. [GOC:bf]
55 | GO:0051056 | 0.0167431465100762 | regulation of small GTPase mediated signal transduction | biological_process | Any process that modulates the frequency, rate or extent of small GTPase mediated signal transduction. [GOC:go_curators]
55 | GO:0043623 | 0.0167819554954833 | cellular protein complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a protein complex, occurring at the level of an individual cell. [GOC:jl]
55 | GO:0006164 | 0.0175003193615231 | purine nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
55 | GO:0010286 | 0.0175003193615231 | heat acclimation | biological_process | Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators]
55 | GO:0006260 | 0.0182103803269717 | DNA replication | biological_process | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. [GOC:mah]
55 | GO:0071897 | 0.0182103803269717 | DNA biosynthetic process | biological_process | The cellular DNA metabolic process resulting in the formation of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:mah]
55 | GO:0006508 | 0.0186725060985051 | proteolysis | biological_process | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. [GOC:bf, GOC:mah]
55 | GO:0006403 | 0.0212338902977138 | RNA localization | biological_process | A process in which RNA is transported to, or maintained in, a specific location. [GOC:ai]
55 | GO:0006405 | 0.0212338902977138 | RNA export from nucleus | biological_process | The directed movement of RNA from the nucleus to the cytoplasm. [GOC:ma]
55 | GO:0050657 | 0.0212338902977138 | nucleic acid transport | biological_process | The directed movement of nucleic acids, single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, ISBN:[PHONE]]
55 | GO:0050658 | 0.0212338902977138 | RNA transport | biological_process | The directed movement of RNA, ribonucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
55 | GO:0051236 | 0.0212338902977138 | establishment of RNA localization | biological_process | The directed movement of RNA to a specific location. [GOC:ai]
55 | GO:0033124 | 0.0218914531844894 | regulation of GTP catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. [GOC:mah]
55 | GO:0043087 | 0.0218914531844894 | regulation of GTPase activity | biological_process | Any process that modulates the rate of GTP hydrolysis by a GTPase. [GOC:jl]
55 | GO:0043547 | 0.0218914531844894 | positive regulation of GTPase activity | biological_process | Any process that activates or increases the activity of a GTPase. [GOC:jl]
55 | GO:0006397 | 0.0247479948665437 | mRNA processing | biological_process | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah]
55 | GO:0051168 | 0.0254208510444498 | nuclear export | biological_process | The directed movement of substances out of the nucleus. [GOC:ai]
55 | GO:0030811 | 0.0276019028548563 | regulation of nucleotide catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of nucleotides. [GOC:mah]
55 | GO:0033121 | 0.0276019028548563 | regulation of purine nucleotide catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of purine nucleotides. [GOC:mah]
55 | GO:0051345 | 0.0276019028548563 | positive regulation of hydrolase activity | biological_process | Any process that activates or increases the frequency, rate or extent of hydrolase activity, the catalysis of the hydrolysis of various bonds. [GOC:ai]
55 | GO:0006184 | 0.0276877130093802 | GTP catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. [ISBN:[PHONE]]
55 | GO:0046039 | 0.0276877130093802 | GTP metabolic process | biological_process | The chemical reactions and pathways involving GTP, guanosine triphosphate. [GOC:go_curators]
55 | GO:1901069 | 0.0276877130093802 | guanosine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of guanosine-containing compounds (guanosines). [GOC:TermGenie]
55 | GO:0001682 | 0.0297409657818006 | tRNA 5'-leader removal | biological_process | Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by [NAME] [PMID:11592395]
55 | GO:0006282 | 0.0297409657818006 | regulation of DNA repair | biological_process | Any process that modulates the frequency, rate or extent of DNA repair. [GOC:go_curators]
55 | GO:0006436 | 0.0297409657818006 | tryptophanyl-tRNA aminoacylation | biological_process | The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
55 | GO:0006898 | 0.0297409657818006 | receptor-mediated endocytosis | biological_process | An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles. [GOC:mah, ISBN:[PHONE]]
55 | GO:0010159 | 0.0297409657818006 | specification of organ position | biological_process | The regionalization process in which information that determines the correct position at which organ primordia are formed is generated and perceived resulting in correct positioning of the new organ. [PMID:9611175]
55 | GO:0010248 | 0.0297409657818006 | establishment or maintenance of transmembrane electrochemical gradient | biological_process | The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:sm]
55 | GO:0010255 | 0.0297409657818006 | glucose mediated signaling pathway | biological_process | The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes. [GOC:sm]
55 | GO:0010275 | 0.0297409657818006 | NAD(P)H dehydrogenase complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form NAD(P)H dehydrogenase complex, which is involved in electron transport from an unidentified electron donor, possibly NAD(P)H or ferredoxin(Fd) to the plastoquinone pool. [GOC:sm]
55 | GO:0016074 | 0.0297409657818006 | snoRNA metabolic process | biological_process | The chemical reactions and pathways involving [NAME], small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA. [GOC:krc]
55 | GO:0030656 | 0.0297409657818006 | regulation of vitamin metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a vitamin, one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. [GOC:mah]
55 | GO:0043144 | 0.0297409657818006 | snoRNA processing | biological_process | Any process involved in the conversion of a primary small nucleolar [NAME] ([NAME]) transcript into a mature [NAME]. [GOC:go_curators, PMID:12773397]
55 | GO:0043487 | 0.0297409657818006 | regulation of RNA stability | biological_process | Any process that modulates the propensity of RNA molecules to degradation. Includes processes that both stabilize and destabilize RNAs. [GOC:jl]
55 | GO:0043489 | 0.0297409657818006 | RNA stabilization | biological_process | Prevention of degradation of RNA molecules. [GOC:go_curators]
55 | GO:0045003 | 0.0297409657818006 | double-strand break repair via synthesis-dependent strand annealing | biological_process | SDSA is a major mechanism of double-strand break repair in mitosis which allows for the error-free repair of a double-strand break without the exchange of adjacent sequences. The broken DNA searches for and base pairs with a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template. Newly synthesized DNA is then displaced from the template and anneal with its complement on the other side of the double-strand break. [PMID:10357855]
55 | GO:0045739 | 0.0297409657818006 | positive regulation of DNA repair | biological_process | Any process that activates or increases the frequency, rate or extent of DNA repair. [GOC:go_curators]
55 | GO:0072583 | 0.0297409657818006 | clathrin-mediated endocytosis | biological_process | An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles. [GOC:BHF, GOC:mah, PMID:18498251, PMID:8970738, PMID:9234965]
55 | GO:2000082 | 0.0297409657818006 | regulation of L-ascorbic acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of L-ascorbic acid biosynthetic process. [PMID:19395407]
55 | GO:2001022 | 0.0297409657818006 | positive regulation of response to DNA damage stimulus | biological_process | Any process that activates or increases the frequency, rate or extent of response to DNA damage stimulus. [GOC:obol]
55 | GO:0009668 | 0.0302525619280853 | plastid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of either of the lipid bilayers surrounding a plastid. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
55 | GO:0010027 | 0.0302525619280853 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
55 | GO:0000338 | 0.0325732222567648 | protein deneddylation | biological_process | The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc]
55 | GO:0010388 | 0.0325732222567648 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
55 | GO:0009894 | 0.0331040401001902 | regulation of catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of substances. [GOC:go_curators]
55 | GO:0009118 | 0.0338368772155714 | regulation of nucleoside metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleosides. [GOC:go_curators]
55 | GO:1901068 | 0.0351933107534968 | guanosine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving guanosine-containing compounds (guanosines). [GOC:TermGenie]
55 | GO:0051603 | 0.0352739523314411 | proteolysis involved in cellular protein catabolic process | biological_process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb]
55 | GO:0034470 | 0.035524514563817 | ncRNA processing | biological_process | Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. [GOC:mah]
55 | GO:0080129 | 0.0364043554879376 | proteasome core complex assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. [PMID:12401807, PMID:17971041]
55 | GO:0000398 | 0.037932275918799 | mRNA splicing, via spliceosome | biological_process | The joining together of exons from one or more primary transcripts of messenger [NAME] (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:[PHONE], ISBN:[PHONE]]
55 | GO:0045036 | 0.037932275918799 | protein targeting to chloroplast | biological_process | The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:[PHONE]]
55 | GO:0072596 | 0.037932275918799 | establishment of protein localization to chloroplast | biological_process | The directed movement of a protein to a specific location in a chloroplast. [GOC:mah]
55 | GO:0072598 | 0.037932275918799 | protein localization to chloroplast | biological_process | A process in which a protein is transported to, or maintained at, a location in a chloroplast. [GOC:ecd]
55 | GO:0016226 | 0.0407903845252803 | iron-sulfur cluster assembly | biological_process | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
55 | GO:0031163 | 0.0407903845252803 | metallo-sulfur cluster assembly | biological_process | The incorporation of a metal and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
55 | GO:0006140 | 0.047738456774464 | regulation of nucleotide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleotides. [GOC:go_curators]
55 | GO:0008033 | 0.047738456774464 | tRNA processing | biological_process | The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group. [GOC:jl, PMID:12533506]
55 | GO:0042991 | 0.047738456774464 | transcription factor import into nucleus | biological_process | The directed movement of a transcription factor from the cytoplasm to the nucleus. [GOC:jl]
55 | [NAME] | 0.047738456774464 | regulation of purine nucleotide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of purine nucleotide metabolic process. [GOC:TermGenie]
55 | GO:0046148 | 0.0491568172512177 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
56 | GO:0006796 | 0.000477445197376393 | phosphate-containing compound metabolic process | biological_process | The chemical reactions and pathways involving the phosphate group, the anion or salt of any phosphoric acid. [GOC:ai]
56 | GO:1901135 | 0.00325484682113168 | carbohydrate derivative metabolic process | biological_process | The chemical reactions and pathways involving carbohydrate derivative. [GOC:TermGenie]
56 | GO:0006355 | 0.00420918205643356 | regulation of transcription, DNA-dependent | biological_process | Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
56 | GO:0019637 | 0.00486066224741489 | organophosphate metabolic process | biological_process | The chemical reactions and pathways involving organophosphates, any phosphate-containing organic compound. [ISBN:[PHONE]]
56 | GO:0009637 | 0.00555454798455669 | response to blue light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. [GOC:ai, GOC:mtg_far_red]
56 | GO:0006817 | 0.005673976863855 | phosphate ion transport | biological_process | The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
56 | GO:0009583 | 0.005673976863855 | detection of light stimulus | biological_process | The series of events in which a light stimulus (in the form of photons) is received and converted into a molecular signal. [GOC:go_curators]
56 | GO:0014070 | 0.007742051633225 | response to organic cyclic compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus. [CHEBI:33832, GOC:ef]
56 | GO:0006081 | 0.008959741344883 | cellular aldehyde metabolic process | biological_process | The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. [GOC:go_curators, ISBN:[PHONE]]
56 | GO:0048522 | 0.00920211416565018 | positive regulation of cellular process | biological_process | Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. [GOC:jid]
56 | GO:0045036 | 0.010254921788042 | protein targeting to chloroplast | biological_process | The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:[PHONE]]
56 | GO:0072596 | 0.010254921788042 | establishment of protein localization to chloroplast | biological_process | The directed movement of a protein to a specific location in a chloroplast. [GOC:mah]
56 | GO:0072598 | 0.010254921788042 | protein localization to chloroplast | biological_process | A process in which a protein is transported to, or maintained at, a location in a chloroplast. [GOC:ecd]
56 | GO:0006041 | 0.0105532459226368 | glucosamine metabolic process | biological_process | The chemical reactions and pathways involving glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin. [GOC:jl, ISBN:[PHONE]]
56 | GO:0006042 | 0.0105532459226368 | glucosamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosamine (2-amino-2-deoxyglucopyranose), an aminodeoxysugar that occurs in combined form in chitin. [GOC:jl, ISBN:[PHONE]]
56 | GO:0009435 | 0.0105532459226368 | NAD biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nicotinamide adenine dinucleotide, a coenzyme present in most living cells and derived from the B vitamin nicotinic acid; biosynthesis may be of either the oxidized form, NAD, or the reduced form, NADH. [GOC:jl, ISBN:[PHONE]]
56 | GO:0010080 | 0.0105532459226368 | regulation of floral meristem growth | biological_process | Any process involved in maintaining the size and shape of a floral meristem. [GOC:tb]
56 | GO:0010203 | 0.0105532459226368 | response to very low fluence red light stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low fluence red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Very low fluence red light is defined in this case as short pulses of red light followed by darkness, providing light levels of less than 0.001 mmol/m2/sec. [GOC:mtg_far_red, GOC:sm]
56 | GO:0010451 | 0.0105532459226368 | floral meristem growth | biological_process | The increase in size or mass of a floral meristem, a population of undifferentiated cells in a plant that gives rise to a flower. [GOC:tb]
56 | GO:0019674 | 0.0105532459226368 | NAD metabolic process | biological_process | The chemical reactions and pathways involving nicotinamide adenine dinucleotide (NAD), a coenzyme present in most living cells and derived from the B vitamin nicotinic acid. [GOC:jl, ISBN:[PHONE]]
56 | GO:0019805 | 0.0105532459226368 | quinolinate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid. [GOC:ai]
56 | GO:0043201 | 0.0105532459226368 | response to leucine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus. [GOC:mlg]
56 | GO:0043462 | 0.0105532459226368 | regulation of ATPase activity | biological_process | Any process that modulates the rate of ATP hydrolysis by an ATPase. [GOC:jl]
56 | GO:0046874 | 0.0105532459226368 | quinolinate metabolic process | biological_process | The chemical reactions and pathways involving quinolinate, the anion of quinolinic acid, also known as 2,3-pyridinedicarboxylic acid. [GOC:ai]
56 | GO:0051176 | 0.0105532459226368 | positive regulation of sulfur metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving sulfur or compounds containing sulfur. [GOC:ai]
56 | GO:0055122 | 0.0105532459226368 | response to very low light intensity stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a very low light intensity stimulus. A very low light intensity stimulus is defined as a level of electromagnetic radiation below 0.001 mmol/m2/sec. [GOC:mtg_far_red]
56 | GO:0070407 | 0.0105532459226368 | oxidation-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the oxidation of one or more amino acid residues in the protein. [GOC:mah]
56 | GO:0080052 | 0.0105532459226368 | response to histidine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus. [PMID:15889294]
56 | GO:0080053 | 0.0105532459226368 | response to phenylalanine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus. [PMID:15889294]
56 | GO:1901073 | 0.0105532459226368 | glucosamine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosamine-containing compounds (glucosamines). [GOC:TermGenie]
56 | GO:1901684 | 0.0105532459226368 | arsenate ion transmembrane transport | biological_process | The directed movement of arsenate ion across a membrane. [GOC:TermGenie]
56 | GO:0009733 | 0.0120315900736192 | response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]
56 | GO:0006644 | 0.0125849262701472 | phospholipid metabolic process | biological_process | The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
56 | GO:0019288 | 0.0127867410400978 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
56 | GO:0019682 | 0.0127867410400978 | glyceraldehyde-3-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis. [GOC:ai, ISBN:[PHONE]]
56 | GO:0031325 | 0.0129901842966454 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
56 | GO:0006090 | 0.0131761447024633 | pyruvate metabolic process | biological_process | The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators]
56 | GO:0009240 | 0.0135735292800065 | isopentenyl diphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. [GOC:jl, ISBN:[PHONE]]
56 | GO:0046490 | 0.0135735292800065 | isopentenyl diphosphate metabolic process | biological_process | The chemical reactions and pathways involving isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. [ISBN:[PHONE]]
56 | GO:0009893 | 0.0138341327526143 | positive regulation of metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
56 | GO:0042793 | 0.0138462507613781 | transcription from plastid promoter | biological_process | The synthesis of RNA from a plastid DNA template, usually by a specific plastid [NAME] polymerase. [GOC:jl, ISBN:[PHONE]]
56 | GO:0009640 | 0.0157932241986961 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
56 | GO:0010374 | 0.0169696605261192 | stomatal complex development | biological_process | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [PMID:17259259]
56 | GO:0009560 | 0.0171730751853068 | embryo sac egg cell differentiation | biological_process | The process in which an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu]
56 | GO:0009751 | 0.0180013790193557 | response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:jl]
56 | GO:0007292 | 0.018068614612849 | female gamete generation | biological_process | Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction. [GOC:dph, ISBN:[PHONE]]
56 | GO:0034599 | 0.0199367317821893 | cellular response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah]
56 | GO:0015824 | 0.0202444678044498 | proline transport | biological_process | The directed movement of proline, pyrrolidine-2-carboxylic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
56 | GO:0000245 | 0.0209967907440861 | spliceosomal complex assembly | biological_process | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. [PMID:9476892]
56 | GO:0006065 | 0.0209967907440861 | UDP-glucuronate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. [GOC:ai]
56 | GO:0006515 | 0.0209967907440861 | misfolded or incompletely synthesized protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of misfolded or attenuated proteins. [GOC:jl]
56 | GO:0006971 | 0.0209967907440861 | hypotonic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hypotonic environment, i.e. an environment with a lower concentration of solutes than the organism or cell. [GOC:jl, PMID:12598593]
56 | GO:0007112 | 0.0209967907440861 | male meiosis cytokinesis | biological_process | A cell cycle process that occurs as part of the male meiotic cell cycle and results in the division of the cytoplasm of a cell to produce two daughter cells. [GOC:ai]
56 | GO:0009830 | 0.0209967907440861 | cell wall modification involved in abscission | biological_process | A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. [GOC:dph, GOC:lr, GOC:sdb_2009, GOC:tb]
56 | GO:0009868 | 0.0209967907440861 | [NAME] and ethylene-dependent systemic resistance, [NAME] mediated signaling pathway | biological_process | The series of molecular signals mediated by [NAME] involved in jasmonic acid/ethylene ([NAME]) dependent systemic resistance. [GOC:jy]
56 | GO:0010201 | 0.0209967907440861 | response to continuous far red light stimulus by the high-irradiance response system | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a continuous far red light stimulus by the high-irradiance response system. Far red light is electromagnetic radiation of wavelength 700-800nm. The activity of the high-irradiance response system is characterized by stronger effects of continuous than pulsed light at equal total fluence. [GOC:mtg_far_red, GOC:sm]
56 | GO:0019359 | 0.0209967907440861 | nicotinamide nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [GOC:go_curators]
56 | GO:0032260 | 0.0209967907440861 | response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus received in the context of the jasmonic acid- and ethylene (ethene)-dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen. [GOC:mah]
56 | GO:0033206 | 0.0209967907440861 | meiotic cytokinesis | biological_process | A cell cycle process that results in the division of the cytoplasm of a cell after meiosis, resulting in the separation of the original cell into two daughter cells. [GOC:mtg_cell_cycle]
56 | GO:0042539 | 0.0209967907440861 | hypotonic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
56 | GO:0044277 | 0.0209967907440861 | cell wall disassembly | biological_process | A process that results in the breakdown of the cell wall. [GOC:jl]
56 | [NAME] | 0.0209967907440861 | chaperone-mediated protein complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a protein complex, mediated by chaperone molecules that do not form part of the finished complex. [GOC:ai]
56 | GO:0022412 | 0.0219078228649114 | cellular process involved in reproduction in multicellular organism | biological_process | A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular organism. [GOC:isa_complete]
56 | GO:0071702 | 0.0228159138942318 | organic substance transport | biological_process | The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon. [CHEBI:50860, GOC:mah]
56 | GO:0035303 | 0.0239820532068835 | regulation of dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule. [GOC:bf]
56 | GO:0035304 | 0.0239820532068835 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
56 | GO:0010310 | 0.0272867678187578 | regulation of hydrogen peroxide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. [PMID:14765119]
56 | GO:0006950 | 0.0273265004647644 | response to stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
56 | GO:0033554 | 0.0277441909724975 | cellular response to stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
56 | GO:0015804 | 0.0281512148368969 | neutral amino acid transport | biological_process | The directed movement of neutral amino acids, amino acids with no net charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
56 | GO:0031328 | 0.0283426801880743 | positive regulation of cellular biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
56 | GO:0009891 | 0.0288942144232728 | positive regulation of biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
56 | GO:0022613 | 0.0295210328879157 | ribonucleoprotein complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a complex containing RNA and proteins. Includes the biosynthesis of the constituent RNA and protein molecules, and those macromolecular modifications that are involved in synthesis or assembly of the ribonucleoprotein complex. [GOC:isa_complete, GOC:mah]
56 | GO:0090407 | 0.0298691638751581 | organophosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the biosynthesis of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose. [GOC:chem_mtg]
56 | GO:0009804 | 0.0302926466943162 | [NAME] process | biological_process | The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
56 | GO:0009805 | 0.0302926466943162 | coumarin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
56 | GO:0007276 | 0.0308229614672772 | gamete generation | biological_process | The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell. [GOC:ems, GOC:mtg_sensu]
56 | GO:0007569 | 0.0313317574447068 | cell aging | biological_process | An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469). [GOC:PO_curators]
56 | GO:0009584 | 0.0313317574447068 | detection of visible light | biological_process | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. [GOC:go_curators, ISBN:[PHONE]]
56 | GO:0010018 | 0.0313317574447068 | far-red light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of far red light by a photoreceptor molecule. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:lr, GOC:mtg_far_red, GOC:sm]
56 | GO:0010343 | 0.0313317574447068 | singlet oxygen-mediated programmed cell death | biological_process | Programmed cell death induced by singlet oxygen. Programmed cell death is the cell death resulting from activation of endogenous cellular processes. [GOC:mtg_apoptosis, PMID:17075038]
56 | [NAME] | 0.0313317574447068 | circadian regulation of calcium ion oscillation | biological_process | Any process that modulates the concentration of cytosolic free calcium ion [Ca2+]cyt with a regularity of approximately 24 hours. [PMID:17982000]
56 | GO:0019363 | 0.0313317574447068 | pyridine nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl, GOC:pde, GOC:vw]
56 | GO:0035435 | 0.0313317574447068 | phosphate ion transmembrane transport | biological_process | The directed movement of phosphate across a membrane by means of some agent such as a transporter or pore. [GOC:vw]
56 | GO:0042938 | 0.0313317574447068 | dipeptide transport | biological_process | The directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:46761, GOC:jl]
56 | GO:0045038 | 0.0313317574447068 | protein import into chloroplast thylakoid membrane | biological_process | The import of proteins into the chloroplast thylakoid membranes. Proteins that are destined for the thylakoid lumen require two uptake-targeting sequences: the first targets the protein to the stroma, and the second targets the protein from the stroma to the thylakoid lumen. Four separate thylakoid-import systems deal with the proteins once they are in the stroma. [ISBN:[PHONE]]
56 | GO:0046349 | 0.0313317574447068 | amino sugar biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any amino sugar, sugars containing an amino group in place of a hydroxyl group. [CHEBI:28963, GOC:curators]
56 | GO:0046398 | 0.0313317574447068 | UDP-glucuronate metabolic process | biological_process | The chemical reactions and pathways involving UDP-glucuronate, a substance composed of glucuronic acid in glycosidic linkage with uridine diphosphate. [GOC:ai]
56 | GO:0051480 | 0.0313317574447068 | cytosolic calcium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings. [GOC:ai, GOC:mah, GOC:rph]
56 | GO:0060771 | 0.0313317574447068 | phyllotactic patterning | biological_process | The radial pattern formation process that results in the formation of leaf or flower primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
56 | GO:0060772 | 0.0313317574447068 | leaf phyllotactic patterning | biological_process | The radial pattern formation process that results in the formation of leaf primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
56 | GO:0060774 | 0.0313317574447068 | auxin mediated signaling pathway involved in phyllotactic patterning | biological_process | The series of molecular signals generated in response to detection of auxin that contributes to the radial pattern formation process resulting in the formation of leaf or flower primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
56 | GO:0071452 | 0.0313317574447068 | cellular response to singlet oxygen | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst. [GOC:mah]
56 | GO:0090342 | 0.0313317574447068 | regulation of cell aging | biological_process | Any process that modulates the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan. [GOC:BHF, GOC:dph, GOC:tb]
56 | GO:0097468 | 0.0313317574447068 | programmed cell death in response to reactive oxygen species | biological_process | Cell death resulting from activation of endogenous cellular processes and occurring as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mtg_apoptosis]
56 | [NAME] | 0.0313317574447068 | glucosamine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving glucosamine-containing compounds (glucosamines). [GOC:TermGenie]
56 | GO:0010090 | 0.0320529338550897 | trichome morphogenesis | biological_process | The process in which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:tair_curators]
56 | GO:0048573 | 0.0320529338550897 | photoperiodism, flowering | biological_process | A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
56 | [NAME] | 0.0324968498747465 | photosynthetic electron transport in photosystem I | biological_process | A photosynthetic electron transport chain in which electrons move from the primary electron acceptor (Quinone, X) through a chain of electron transport molecules in the thylakoid membrane until they reach ferredoxin which passes the electron to the ultimate electron acceptor; NADP. [GOC:jid, ISBN:[PHONE], ISBN:[PHONE]]
56 | GO:0019220 | 0.0326752568814328 | regulation of phosphate metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. [GOC:go_curators]
56 | GO:0051174 | 0.0326752568814328 | regulation of phosphorus metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. [GOC:ai]
56 | GO:0009902 | 0.0333084292134258 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
56 | GO:0051644 | 0.0333084292134258 | [NAME] | biological_process | Any process in which a plastid is transported to, and/or maintained in, a specific location within the cell. [GOC:ai]
56 | GO:0051667 | 0.0333084292134258 | establishment of plastid localization | biological_process | The directed movement of a plastid to a specific location in the cell. [GOC:ai]
56 | GO:0008654 | 0.0344507812591924 | phospholipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
56 | GO:0006650 | 0.0345893775778383 | [NAME] process | biological_process | The chemical reactions and pathways involving glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue. [ISBN:[PHONE]]
56 | GO:0007126 | 0.0345893775778383 | meiosis | biological_process | A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle. A meiotic cell cycle is the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations. [GOC:dph, GOC:mah, PMID:9334324]
56 | GO:0009648 | 0.0345893775778383 | photoperiodism | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
56 | GO:0051656 | 0.0345893775778383 | establishment of organelle localization | biological_process | The directed movement of an organelle to a specific location. [GOC:ai]
56 | GO:0034219 | 0.0347623043681591 | carbohydrate transmembrane transport | biological_process | The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
56 | GO:0010103 | 0.0358957016938665 | stomatal complex morphogenesis | biological_process | The process in which the anatomical structures of the stomatal complex are generated and organized. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [GOC:tair_curators]
56 | GO:0009639 | 0.035948223565547 | response to red or far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:ai, GOC:mtg_far_red]
56 | GO:0042440 | 0.035948223565547 | pigment metabolic process | biological_process | The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:jl, ISBN:[PHONE]]
56 | GO:0000023 | 0.0372273172308569 | [NAME] process | biological_process | The chemical reactions and pathways involving the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose), an intermediate in the catabolism of glycogen and starch. [GOC:jl, ISBN:[PHONE]]
56 | GO:0009611 | 0.0373505217853965 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
56 | GO:0009561 | 0.038584132991476 | megagametogenesis | biological_process | The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. [GOC:jl, GOC:mtg_plant]
56 | GO:0010026 | 0.038584132991476 | trichome differentiation | biological_process | The process in which a relatively unspecialized epidermal cell acquires the specialized features of a trichome cell. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, PMID:9367433]
56 | GO:2000377 | 0.0399660511173889 | regulation of reactive oxygen species metabolic process | biological_process | Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
56 | GO:0046686 | 0.0414539420121931 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
56 | GO:0000304 | 0.0415592576859561 | response to singlet oxygen | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst. [GOC:krc, ISBN:[PHONE], ISBN:[PHONE]]
56 | GO:0010161 | 0.0415592576859561 | red light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of red light by a photoreceptor molecule. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm]
56 | GO:0042762 | 0.0415592576859561 | regulation of sulfur metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving sulfur, the nonmetallic element sulfur or compounds that contain sulfur. [GOC:go_curators]
56 | GO:0042939 | 0.0415592576859561 | tripeptide transport | biological_process | The directed movement of a tripeptide, a compound containing three amino acids linked together by peptide bonds, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:47923, GOC:jl]
56 | GO:0071490 | 0.0415592576859561 | cellular response to far red light | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mah]
56 | GO:0006655 | 0.041911337156232 | phosphatidylglycerol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. [ISBN:[PHONE]]
56 | GO:0046471 | 0.041911337156232 | [NAME] process | biological_process | The chemical reactions and pathways involving phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. They are important constituents of cell membranes. [ISBN:[PHONE]]
56 | GO:0019953 | 0.0428047709323709 | sexual reproduction | biological_process | The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and [NAME]); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times. [ISBN:[PHONE]]
56 | GO:0010016 | 0.0431843297764115 | shoot system morphogenesis | biological_process | The process in which the anatomical structures of the shoot are generated and organized. The shoot is the part of a seed plant body that is usually above ground. [GOC:sm, ISBN:[PHONE]]
56 | [NAME] | 0.0444070765519874 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
56 | GO:0006457 | 0.0466944259954738 | protein folding | biological_process | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb]
56 | GO:0009963 | 0.0469568241817525 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
56 | GO:0036293 | 0.0469568241817525 | response to decreased oxygen levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen. [GOC:al]
56 | GO:0070482 | 0.0469568241817525 | response to oxygen levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. [GOC:BHF, GOC:mah]
56 | GO:0009791 | 0.0469907485055027 | post-embryonic development | biological_process | The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development. [GOC:go_curators]
56 | GO:0046486 | 0.0472483109907555 | glycerolipid metabolic process | biological_process | The chemical reactions and pathways involving glycerolipids, any lipid with a glycerol backbone. Diacylglycerol and phosphatidate are key lipid intermediates of glycerolipid biosynthesis. [GOC:ai, PMID:8906569]
56 | GO:0042743 | 0.0478064491248283 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
56 | GO:0006470 | 0.048778440183377 | protein dephosphorylation | biological_process | The process of removing one or more phosphoric residues from a protein. [GOC:hb]
56 | GO:0009117 | 0.0492469930011689 | nucleotide metabolic process | biological_process | The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates). [GOC:ma]
56 | GO:0009595 | 0.0495592005743521 | detection of biotic stimulus | biological_process | The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal. [GOC:hb]
56 | GO:0019374 | 0.0495592005743521 | galactolipid metabolic process | biological_process | The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
56 | GO:0019375 | 0.0495592005743521 | galactolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
57 | GO:0042793 | 4.60499596976637e-06 | transcription from plastid promoter | biological_process | The synthesis of RNA from a plastid DNA template, usually by a specific plastid [NAME] polymerase. [GOC:jl, ISBN:[PHONE]]
57 | GO:0006412 | 2.50784399907145e-05 | translation | biological_process | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]
57 | GO:0006364 | 0.000140168599718664 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
57 | GO:0009793 | 0.000286139752232914 | embryo development ending in seed dormancy | biological_process | The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]
57 | GO:0045036 | 0.000345188998836952 | protein targeting to chloroplast | biological_process | The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:[PHONE]]
57 | GO:0009902 | 0.000370494808206405 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
57 | GO:0010027 | 0.000580325743166931 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
57 | GO:0046686 | 0.00064490101798509 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
57 | GO:0045893 | 0.000897529957696712 | positive regulation of transcription, DNA-dependent | biological_process | Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
57 | GO:0006457 | 0.00243702611169513 | protein folding | biological_process | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb]
57 | GO:0055114 | 0.00288509593632492 | oxidation-reduction process | biological_process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:[NAME], GOC:jid, GOC:mlg, GOC:rph]
57 | GO:0019288 | 0.00289584438055335 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
57 | GO:0010020 | 0.00295886900156097 | chloroplast fission | biological_process | The division of a chloroplast within a cell to form two or more separate chloroplast compartments. This division occurs independently of mitosis. [GOC:lr]
57 | GO:0015979 | 0.00377144519133961 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
57 | GO:0006399 | 0.0041271643351223 | tRNA metabolic process | biological_process | The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established. [ISBN:[PHONE]]
57 | GO:0006096 | 0.00443972474468665 | glycolysis | biological_process | The chemical reactions and pathways resulting in the breakdown of a monosaccharide (generally glucose) into pyruvate, with the concomitant production of a small amount of ATP. Glycolysis begins with phosphorylation of a monosaccharide (generally glucose) on the sixth carbon by a hexokinase, and ends with the production of pyruvate. Pyruvate may be converted to ethanol, lactate, or other small molecules, or fed into the TCA cycle. [GOC:bf, [NAME], Wikipedia:Glycolysis]
57 | GO:0001510 | 0.00456821106214192 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
57 | GO:0019252 | 0.00697909852897973 | starch biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai]
57 | GO:0007005 | 0.00733134603224184 | mitochondrion organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
57 | GO:0000478 | 0.00854999580313464 | endonucleolytic cleavage involved in rRNA processing | biological_process | Any endonucleolytic cleavage involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into a mature rRNA molecule. Some endonucleolytic cleavages produce the mature end, while others are a step in the process of generating the mature end from the pre-rRNA. [GOC:krc, PMID:10690410]
57 | GO:0006655 | 0.00968295052263488 | phosphatidylglycerol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. [ISBN:[PHONE]]
57 | GO:0006733 | 0.0100174048187676 | oxidoreduction coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes that are required, in addition to an enzyme and a substrate, for an oxidoreductase reaction to proceed. [GOC:mah]
57 | GO:0006098 | 0.0125995119732781 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
57 | GO:0006740 | 0.0125995119732781 | NADPH regeneration | biological_process | A metabolic process that generates a pool of NADPH by the reduction of NADP+. [GOC:mah]
57 | GO:0009218 | 0.0132154917862798 | pyrimidine ribonucleotide metabolic process | biological_process | The chemical reactions and pathways involving a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0009220 | 0.0132154917862798 | pyrimidine ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0016109 | 0.0132154917862798 | tetraterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tetraterpenoid compounds, terpenoids with eight isoprene units. [GOC:go_curators]
57 | GO:0016117 | 0.0132154917862798 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
57 | GO:0046148 | 0.0132525513542162 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
57 | GO:0006739 | 0.0136748073711149 | NADP metabolic process | biological_process | The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
57 | GO:0006220 | 0.0139305382067032 | pyrimidine nucleotide metabolic process | biological_process | The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0006221 | 0.0139305382067032 | pyrimidine nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0046496 | 0.0142350266843848 | [NAME] process | biological_process | The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [ISBN:[PHONE]]
57 | GO:0006424 | 0.0143907898944773 | glutamyl-tRNA aminoacylation | biological_process | The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
57 | GO:0009186 | 0.0143907898944773 | deoxyribonucleoside diphosphate metabolic process | biological_process | The chemical reactions and pathways involving a deoxyribonucleoside diphosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with diphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0010288 | 0.0143907898944773 | response to lead ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lead ion stimulus. [GOC:tair_curators, PMID:16461380]
57 | GO:0010726 | 0.0143907898944773 | positive regulation of hydrogen peroxide metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. [GOC:dph, GOC:hjd, GOC:tb]
57 | GO:0010728 | 0.0143907898944773 | regulation of hydrogen peroxide biosynthetic process | biological_process | Any process that modulates the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:dph, GOC:hjd, GOC:tb]
57 | GO:0010729 | 0.0143907898944773 | positive regulation of hydrogen peroxide biosynthetic process | biological_process | Any process that increases the rate, frequency or extent of hydrogen peroxide biosynthesis. The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:dph, GOC:hjd, GOC:tb]
57 | [NAME] | 0.0143907898944773 | late endosome to vacuole transport | biological_process | The directed movement of substances from late endosomes to the vacuole. In yeast, after transport to the prevacuolar compartment, endocytic content is delivered to the late endosome and on to the vacuole. This pathway is analogous to endosome to lysosome transport. [PMID:11872141]
57 | [NAME] | 0.0143907898944773 | FAD metabolic process | biological_process | The chemical reactions and pathways involving FAD, the oxidized form of flavin adenine dinucleotide. [CHEBI:16238, ISBN:[PHONE]]
57 | GO:0072387 | 0.0143907898944773 | flavin adenine dinucleotide metabolic process | biological_process | The chemical reactions and pathways involving flavin adenine dinucleotide, which acts as a coenzyme or prosthetic group of various flavoprotein oxidoreductase enzymes. [CHEBI:24040, GOC:mah]
57 | GO:0080056 | 0.0143907898944773 | petal vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the petal of vascular plants. [PMID:17369435]
57 | GO:0080057 | 0.0143907898944773 | sepal vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the sepal of vascular plants. [PMID:17369435]
57 | GO:0016108 | 0.0146697668582871 | tetraterpenoid metabolic process | biological_process | The chemical reactions and pathways involving tetraterpenoid compounds, terpenoids with eight isoprene units. [ISBN:[PHONE]]
57 | GO:0016116 | 0.0146697668582871 | [NAME] process | biological_process | The chemical reactions and pathways involving carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [ISBN:[PHONE]]
57 | GO:0019362 | 0.0148105282233933 | [NAME] process | biological_process | The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl]
57 | GO:0044702 | 0.0156122758653519 | single organism reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals, involving a single organism. [GOC:jl]
57 | GO:0045333 | 0.0157349202350058 | cellular respiration | biological_process | The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which either requires oxygen (aerobic respiration) or does not (anaerobic respiration). [ISBN:[PHONE], ISBN:[PHONE]]
57 | GO:0072524 | 0.0160080615866045 | pyridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. [CHEBI:26421, GOC:mah]
57 | GO:0090351 | 0.0160080615866045 | seedling development | biological_process | The process whose specific outcome is the progression of the seedling over time, beginning with seed germination and ending when the first adult leaves emerge. [GOC:tb, PO:0007131]
57 | GO:0072528 | 0.0162217852947319 | pyrimidine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. [[NAME], GOC:mah]
57 | GO:0000023 | 0.0178734719434333 | [NAME] process | biological_process | The chemical reactions and pathways involving the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose), an intermediate in the catabolism of glycogen and starch. [GOC:jl, ISBN:[PHONE]]
57 | GO:0015980 | 0.0194009478986402 | energy derivation by oxidation of organic compounds | biological_process | The chemical reactions and pathways by which a cell derives energy from organic compounds; results in the oxidation of the compounds from which energy is released. [GOC:mah]
57 | GO:0072527 | 0.0196265849571354 | pyrimidine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. [[NAME], GOC:mah]
57 | GO:0051186 | 0.0199379258023736 | cofactor [NAME] process | biological_process | The chemical reactions and pathways involving a cofactor, a substance that is required for the activity of an enzyme or other protein. Cofactors may be inorganic, such as the metal atoms zinc, iron, and copper in certain forms, or organic, in which case they are referred to as coenzymes. Cofactors may either be bound tightly to active sites or bind loosely with the substrate. [GOC:ai]
57 | GO:0016114 | 0.0229675875291335 | terpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. [GOC:ai]
57 | GO:0006354 | 0.0242087631765294 | DNA-dependent transcription, elongation | biological_process | The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase. [GOC:mah, GOC:txnOH, PMID:15020047, PMID:18280161]
57 | GO:0006418 | 0.0242087631765294 | tRNA aminoacylation for protein translation | biological_process | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma]
57 | GO:0043038 | 0.0242087631765294 | amino acid activation | biological_process | The modification of an amino acid to an active form, for incorporation into a peptide, protein or other macromolecule. [GOC:jl]
57 | GO:0043039 | 0.0242087631765294 | tRNA aminoacylation | biological_process | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. [GOC:ma, GOC:mah, MetaCyc:Aminoacyl-tRNAs]
57 | GO:0016226 | 0.0249626254240072 | iron-sulfur cluster assembly | biological_process | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
57 | GO:0031163 | 0.0249626254240072 | metallo-sulfur cluster assembly | biological_process | The incorporation of a metal and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
57 | GO:0006732 | 0.0257640412782267 | coenzyme metabolic process | biological_process | The chemical reactions and pathways involving coenzymes, any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [ISBN:[PHONE]]
57 | GO:0006626 | 0.0264735558955482 | protein targeting to mitochondrion | biological_process | The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. [GOC:mcc, ISBN:[PHONE]]
57 | GO:0070585 | 0.0264735558955482 | protein localization to mitochondrion | biological_process | A process in which a protein is transported to, or maintained in, a location within the mitochondrion. [GOC:ecd]
57 | GO:0072655 | 0.0264735558955482 | establishment of protein localization to mitochondrion | biological_process | The directed movement of a protein to a specific location in the mitochondrion. [GOC:mah]
57 | GO:0006435 | 0.0285767532576268 | threonyl-tRNA aminoacylation | biological_process | The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
57 | GO:0009157 | 0.0285767532576268 | deoxyribonucleoside monophosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0009162 | 0.0285767532576268 | deoxyribonucleoside monophosphate metabolic process | biological_process | The chemical reactions and pathways involving a deoxyribonucleoside monophosphate, a compound consisting of a nucleobase linked to a deoxyribose sugar esterified with phosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0010582 | 0.0285767532576268 | floral meristem determinacy | biological_process | The process in which a floral meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate). [PMID:18441215]
57 | GO:0010588 | 0.0285767532576268 | cotyledon vascular tissue pattern formation | biological_process | Vascular tissue pattern formation as it occurs in the cotyledon of vascular plants. [PMID:10559439]
57 | GO:0018023 | 0.0285767532576268 | peptidyl-lysine trimethylation | biological_process | The methylation of peptidyl-lysine to form peptidyl-N6,N6,N6-trimethyl-L-lysine. [RESID:AA0074]
57 | GO:2000379 | 0.0285767532576268 | positive regulation of reactive oxygen species metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
57 | GO:0006721 | 0.0288558337012332 | terpenoid metabolic process | biological_process | The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups. [ISBN:[PHONE]]
57 | GO:0009117 | 0.0298092729421936 | nucleotide metabolic process | biological_process | The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates). [GOC:ma]
57 | GO:0006753 | 0.0307000776914433 | nucleoside phosphate metabolic process | biological_process | The chemical reactions and pathways involving any phosphorylated nucleoside. [GOC:mah]
57 | GO:0009073 | 0.0312946545687577 | aromatic amino acid family biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
57 | GO:0009260 | 0.0323527933025111 | ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
57 | GO:0046390 | 0.0323527933025111 | ribose phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of ribose phosphate, any phosphorylated ribose sugar. [GOC:ai]
57 | GO:0005984 | 0.0348512556015436 | disaccharide metabolic process | biological_process | The chemical reactions and pathways involving any disaccharide, sugars composed of two monosaccharide units. [GOC:jl, ISBN:01928006X]
57 | GO:0006414 | 0.0360221787864132 | translational elongation | biological_process | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems]
57 | GO:0018193 | 0.0365453076741673 | peptidyl-amino acid modification | biological_process | The alteration of an amino acid residue in a peptide. [GOC:mah]
57 | GO:0055086 | 0.0369695050638515 | nucleobase-containing small molecule metabolic process | biological_process | The cellular chemical reactions and pathways involving a nucleobase-containing small molecule: a nucleobase, a nucleoside, or a nucleotide. [GOC:vw]
57 | GO:0042440 | 0.0387583371391877 | pigment metabolic process | biological_process | The chemical reactions and pathways involving pigment, any general or particular coloring matter in living organisms, e.g. melanin. [GOC:jl, ISBN:[PHONE]]
57 | GO:1901564 | 0.0399606608479698 | organonitrogen compound metabolic process | biological_process | The chemical reactions and pathways involving organonitrogen compound. [GOC:pr, GOC:TermGenie]
57 | GO:0009553 | 0.0415775573691591 | embryo sac development | biological_process | The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb]
57 | GO:0010022 | 0.0425607731243661 | meristem determinacy | biological_process | The process in which a meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate). [GOC:lr]
57 | GO:0042726 | 0.0425607731243661 | flavin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a flavin, any derivative of the dimethylisoalloxazine (7,8-dimethylbenzo[g]pteridine-2,4(3H,10H)-dione) skeleton, with a substituent on the 10 position. [CHEBI:30527, GOC:jl, GOC:mah]
57 | GO:0046786 | 0.0425607731243661 | viral replication complex formation and maintenance | biological_process | The process of organizing and assembling viral replication proteins in preparation for viral replication. [ISBN:[PHONE]]
57 | GO:0000413 | 0.0426046671229819 | protein peptidyl-prolyl isomerization | biological_process | The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570]
57 | GO:0009060 | 0.0426046671229819 | aerobic respiration | biological_process | The enzymatic release of energy from organic compounds (especially carbohydrates and fats) which requires oxygen as the terminal electron acceptor. [GOC:jl, ISBN:[PHONE]]
57 | GO:0048609 | 0.0433074744431158 | multicellular organismal reproductive process | biological_process | The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. [GOC:dph, GOC:jid, GOC:tb]
57 | GO:0019684 | 0.0444803522955076 | photosynthesis, light reaction | biological_process | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. [http://www.arabidopsis.org]
57 | GO:0034976 | 0.0456722530947869 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
57 | GO:0032504 | 0.0468832107049933 | multicellular organism reproduction | biological_process | The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. [GOC:isa_complete, GOC:jid]
58 | GO:0006418 | 1.00524384852332e-06 | tRNA aminoacylation for protein translation | biological_process | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis. [GOC:ma]
58 | GO:0009220 | 1.01286909978309e-06 | pyrimidine ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
58 | GO:0006606 | 1.35916101011642e-06 | protein import into nucleus | biological_process | The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl]
58 | GO:0001510 | 0.000232432796308384 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
58 | GO:0006406 | 0.000679231200482582 | mRNA export from nucleus | biological_process | The directed movement of mRNA from the nucleus to the cytoplasm. [GOC:ma]
58 | GO:0000478 | 0.00110250403082321 | endonucleolytic cleavage involved in rRNA processing | biological_process | Any endonucleolytic cleavage involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into a mature rRNA molecule. Some endonucleolytic cleavages produce the mature end, while others are a step in the process of generating the mature end from the pre-rRNA. [GOC:krc, PMID:10690410]
58 | GO:0009062 | 0.00461935484732693 | fatty acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:go_curators]
58 | GO:0007059 | 0.00490730717880457 | chromosome segregation | biological_process | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the alignment of chromosomes at the metaphase plate, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. [GOC:ai, GOC:mah]
58 | GO:0009734 | 0.00492330661008496 | auxin mediated signaling pathway | biological_process | The series of molecular signals generated in response to detection of auxin. [GOC:mah, GOC:sm]
58 | GO:0048825 | 0.00492330661008496 | cotyledon development | biological_process | The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
58 | GO:0010014 | 0.00541306943449538 | meristem initiation | biological_process | Initiation of a region of tissue in a plant that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation, thereby effecting growth and development of a plant by giving rise to more meristem or specialized tissue. [GOC:sm]
58 | GO:0006396 | 0.00838189580940578 | RNA processing | biological_process | Any process involved in the conversion of one or more primary [NAME] transcripts into one or more mature RNA molecules. [GOC:mah]
58 | GO:0007389 | 0.00889594452338307 | pattern specification process | biological_process | Any developmental process that results in the creation of defined areas or spaces within an organism to which cells respond and eventually are instructed to differentiate. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
58 | GO:0071281 | 0.00930796480460144 | cellular response to iron ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:mah]
58 | [NAME] | 0.00975790510650097 | intracellular protein transmembrane import | biological_process | The directed movement of proteins into an intracellular organelle, across a membrane. [GOC:jl]
58 | GO:0010629 | 0.0100904334384162 | negative regulation of gene expression | biological_process | Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
58 | GO:0006412 | 0.0103558206008263 | translation | biological_process | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]
58 | GO:0010558 | 0.0103558206008263 | negative regulation of macromolecule biosynthetic process | biological_process | Any process that decreases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
58 | GO:2000113 | 0.0103558206008263 | negative regulation of cellular macromolecule biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular macromolecule biosynthetic process. [GOC:obol]
58 | [NAME] | 0.0105150394298517 | posttranscriptional gene silencing by RNA | biological_process | Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]
58 | GO:0000338 | 0.0119175824154279 | protein deneddylation | biological_process | The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc]
58 | GO:0010388 | 0.0119175824154279 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
58 | GO:0031327 | 0.0124248871682758 | negative regulation of cellular biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
58 | GO:1901699 | 0.0127109046699039 | cellular response to nitrogen compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. [GOC:pr, GOC:TermGenie]
58 | GO:0009890 | 0.0128733315181126 | negative regulation of biosynthetic process | biological_process | Any process that stops, prevents, or reduces the rate of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
58 | GO:0016441 | 0.0130173315866418 | posttranscriptional gene silencing | biological_process | The inactivation of gene expression by a posttranscriptional mechanism. [GOC:mah, PMID:15020054]
58 | GO:0009640 | 0.0151493889770609 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
58 | GO:0007062 | 0.015192707255896 | sister chromatid cohesion | biological_process | The cell cycle process in which the sister chromatids of a replicated chromosome are associated with each other. [GOC:jh, GOC:mah, ISBN:[PHONE]]
58 | GO:0016558 | 0.017662647319418 | protein import into peroxisome matrix | biological_process | The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:[PHONE], PMID:11687502, PMID:11988772]
58 | GO:0010608 | 0.0179533326253785 | posttranscriptional regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript. [GOC:dph, GOC:tb]
58 | GO:0016458 | 0.0186370725002331 | gene silencing | biological_process | Any transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. [GOC:dph, GOC:jid, GOC:tb]
58 | GO:0006625 | 0.0189860694294681 | protein targeting to peroxisome | biological_process | The process of directing proteins towards the peroxisome, usually using signals contained within the protein. [GOC:ai]
58 | GO:0072662 | 0.0189860694294681 | protein localization to peroxisome | biological_process | A process in which a protein is transported to, or maintained at, a location in a peroxisome. [GOC:ecd]
58 | GO:0072663 | 0.0189860694294681 | establishment of protein localization to peroxisome | biological_process | The directed movement of a protein to a specific location in a peroxisome. [GOC:mah]
58 | GO:0006996 | 0.019929925817542 | organelle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane. [GOC:mah]
58 | GO:0043574 | 0.0203694338754404 | peroxisomal transport | biological_process | Transport of substances into, out of or within a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:jl]
58 | GO:0000028 | 0.0219059801727613 | ribosomal small subunit assembly | biological_process | The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit. [GOC:jl]
58 | GO:0000726 | 0.0219059801727613 | non-recombinational repair | biological_process | A DNA repair process in which that does not require the exchange of genetic material between the broken DNA molecule and a homologous region of DNA. [GOC:elh]
58 | GO:0006303 | 0.0219059801727613 | double-strand break repair via nonhomologous end joining | biological_process | The repair of a double-strand break in DNA in which the two broken ends are rejoined with little or no sequence complementarity. Information at the DNA ends may be lost due to the modification of broken DNA ends. [PMID:10827453]
58 | GO:0006407 | 0.0219059801727613 | rRNA export from nucleus | biological_process | The directed movement of rRNA from the nucleus to the cytoplasm; the rRNA is usually in the form of ribonucleoproteins. [GOC:ma, GOC:mah]
58 | GO:0006430 | 0.0219059801727613 | lysyl-tRNA aminoacylation | biological_process | The process of coupling lysine to lysyl-tRNA, catalyzed by lysyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
58 | GO:0006432 | 0.0219059801727613 | phenylalanyl-tRNA aminoacylation | biological_process | The process of coupling phenylalanine to phenylalanyl-tRNA, catalyzed by phenylalanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
58 | GO:0015074 | 0.0219059801727613 | DNA integration | biological_process | The process in which a segment of DNA is incorporated into another, usually larger, DNA molecule such as a chromosome. [GOC:mah]
58 | GO:0031053 | 0.0219059801727613 | primary miRNA processing | biological_process | Any process involved in the conversion of a primary microRNA transcript into a pre-microRNA molecule. [GOC:sl, PMID:15211354]
58 | GO:0035278 | 0.0219059801727613 | negative regulation of translation involved in gene silencing by miRNA | biological_process | The process in which microRNAs (miRNAs) block the translation of target mRNAs into proteins. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically repress translation if the miRNA imperfectly base-pairs with the 3' untranslated regions of target mRNAs. [PMID:14744438, PMID:15196554]
58 | GO:0040033 | 0.0219059801727613 | negative regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that stops, prevents or reduces the rate that mRNAs are effectively translated into protein. [GOC:dph, GOC:ems, GOC:tb]
58 | GO:0042255 | 0.0219059801727613 | ribosome assembly | biological_process | The aggregation, arrangement and bonding together of the mature ribosome and of its subunits. [GOC:ma]
58 | GO:0045974 | 0.0219059801727613 | regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that modulates the frequency, rate or extent that mRNAs are effectively translated into protein. [GOC:dph, GOC:go_curators, GOC:tb]
58 | GO:0051029 | 0.0219059801727613 | rRNA transport | biological_process | The directed movement of rRNA, ribosomal ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
58 | GO:0010605 | 0.0224686015549275 | negative regulation of macromolecule metabolic process | biological_process | Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
58 | GO:0048523 | 0.0225464880965835 | negative regulation of cellular process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. [GOC:jid]
58 | GO:0044257 | 0.0231696546975966 | cellular protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:jl]
58 | GO:0035196 | 0.0233185677810585 | production of miRNAs involved in gene silencing by miRNA | biological_process | Cleavage of stem-loop RNA precursors into microRNAs (miRNAs), a class of small RNAs that primarily silence genes by blocking the translation of mRNA transcripts into protein. [GOC:dph, GOC:tb, PMID:15066275, PMID:15066283]
58 | GO:0045892 | 0.0237704088665755 | negative regulation of transcription, DNA-dependent | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
58 | GO:0051253 | 0.0237704088665755 | negative regulation of RNA metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
58 | GO:0042023 | 0.0248854835770055 | DNA endoreduplication | biological_process | Regulated re-replication of DNA within a single cell cycle, resulting in an increased cell ploidy. An example of this process occurs in the synthesis of Drosophila salivary gland cell polytene chromosomes. [GOC:jl]
58 | GO:0044786 | 0.0248854835770055 | cell cycle DNA replication | biological_process | The DNA-dependent DNA replication that takes place as part of the cell cycle. [GOC:mtg_cell_cycle]
58 | GO:0045934 | 0.0270641096386906 | negative regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
58 | GO:0071103 | 0.0271200584478616 | DNA conformation change | biological_process | A cellular process that results in a change in the spatial configuration of a DNA molecule. A conformation change can bend DNA, or alter the, twist, writhe, or linking number of a DNA molecule. [GOC:mah]
58 | GO:0030163 | 0.0284447750399394 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:mah]
58 | GO:0051172 | 0.0288249539752894 | negative regulation of nitrogen compound metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
58 | [NAME] | 0.0290170322702353 | RNA interference | biological_process | The process in which double-stranded RNAs silence cognate genes. Involves posttranscriptional gene inactivation ('silencing') both of transgenes or dsRNA introduced into a germline, and of the host gene(s) homologous to the transgenes or dsRNA. This silencing is triggered by the introduction of transgenes or double-stranded RNA (dsRNA), and can occur through a specific decrease in the level of mRNA, or by negative regulation of translation, of both host genes and transgenes. [GOC:ems, PMID:11201747, PMID:11713190, PMID:18771919]
58 | GO:0006259 | 0.031719478861162 | DNA metabolic process | biological_process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. [ISBN:[PHONE]]
58 | GO:0009292 | 0.0317277719504277 | genetic transfer | biological_process | In the absence of a sexual life cycle, the process involved in the introduction of genetic information to create a genetically different individual. [GOC:clt]
58 | GO:0009294 | 0.0317277719504277 | DNA mediated transformation | biological_process | The introduction and uptake of foreign genetic material (DNA or RNA) into a cell, and often the expression of that genetic material. [ISBN:[PHONE], Wikipedia:Transformation_(genetics)]
58 | GO:0010311 | 0.0317277719504277 | lateral root formation | biological_process | The process that gives rise to a lateral root. This process pertains to the initial formation of a structure from unspecified parts. A lateral root primordium represents an organized group of cells derived from the root pericycle that will differentiate into a new root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators, PMID:17259263]
58 | GO:0031050 | 0.0317795546041849 | dsRNA fragmentation | biological_process | Cleavage of double-stranded RNA molecules by an RNaseIII-family enzyme to produce small RNAs (generally 20-30 nucleotides, depending on species) with biological function. [GOC:ns]
58 | GO:0035195 | 0.0317795546041849 | gene silencing by miRNA | biological_process | Downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [PMID:14744438, PMID:15066275, PMID:15066283]
58 | GO:0043331 | 0.0317795546041849 | response to dsRNA | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. [GOC:jl]
58 | GO:0070918 | 0.0317795546041849 | production of small RNA involved in gene silencing by RNA | biological_process | The process in which a double-stranded RNA precursor is processed into short (20-30 nt) fragments. [NAME] cleavage is catalyzed by a Dicer endonuclease. [GOC:mah, PMID:19239886]
58 | GO:0071359 | 0.0317795546041849 | cellular response to dsRNA | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a double-stranded RNA stimulus. [GOC:mah]
58 | GO:0006635 | 0.0318758993349303 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
58 | GO:0019395 | 0.0318758993349303 | fatty acid oxidation | biological_process | The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [ISBN:[PHONE], MetaCyc:FAO-PWY]
58 | GO:0044267 | 0.0328206116165741 | cellular protein metabolic process | biological_process | The chemical reactions and pathways involving a specific protein, rather than of proteins in general, occurring at the level of an individual cell. Includes cellular protein modification. [GOC:jl]
58 | GO:0009892 | 0.0332851118664017 | negative regulation of metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
58 | GO:0010073 | 0.0335208882251407 | meristem maintenance | biological_process | Any process involved in maintaining the identity, size and shape of a meristem. [GOC:tb]
58 | GO:0006397 | 0.033661425636268 | mRNA processing | biological_process | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah]
58 | GO:0009799 | 0.033661425636268 | specification of symmetry | biological_process | The establishment of an organism's body plan or part of an organism such that a similar arrangement in form and relationship of parts around a common axis, or around each side of a plane is created. [GOC:go_curators]
58 | GO:0009855 | 0.033661425636268 | determination of bilateral symmetry | biological_process | The establishment of an organism's body plan or part of an organism with respect to a single longitudinal plane. The pattern can either be symmetric, such that the halves are mirror images, or asymmetric where the pattern deviates from this symmetry. [GOC:go_curators]
58 | GO:0031324 | 0.0345163888002147 | negative regulation of cellular metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
58 | GO:0019538 | 0.0365864909841304 | [NAME] process | biological_process | The chemical reactions and pathways involving a specific protein, rather than of proteins in general. Includes protein modification. [GOC:ma]
58 | GO:0051276 | 0.0369106194906689 | chromosome organization | biological_process | A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
58 | GO:0051603 | 0.0377336049106809 | proteolysis involved in cellular protein catabolic process | biological_process | The hydrolysis of a peptide bond or bonds within a protein as part of the chemical reactions and pathways resulting in the breakdown of a protein by individual cells. [GOC:ai, GOC:dph, GOC:tb]
58 | GO:0034440 | 0.0381084357989801 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
58 | GO:0045595 | 0.0396907603246087 | regulation of cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of cell differentiation, the process in which relatively unspecialized cells acquire specialized structural and functional features. [GOC:go_curators]
58 | GO:0051510 | 0.0404143193989083 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
58 | GO:0070647 | 0.0422312411995771 | protein modification by small protein conjugation or removal | biological_process | A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein. [GOC:mah]
58 | GO:0002252 | 0.0432408454387875 | immune effector process | biological_process | Any process of the immune system that can potentially contribute to an immune response. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05, ISBN:[PHONE]]
58 | GO:0000447 | 0.0433355149107182 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410]
58 | GO:0000460 | 0.0433355149107182 | maturation of 5.8S rRNA | biological_process | Any process involved in the maturation of a precursor 5.8S ribosomal RNA (rRNA) molecule into a mature 5.8S rRNA molecule. [GOC:curators]
58 | GO:0000461 | 0.0433355149107182 | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage at the 3'-end of the SSU-rRNA from an originally tricistronic rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. [GOC:krc, PMID:10690410]
58 | [NAME] | 0.0433355149107182 | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Any process involved in the maturation of an rRNA molecule originally produced as part of a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410]
58 | GO:0000479 | 0.0433355149107182 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [NAME] ribosomal RNA transcripts with three genes, in this order, are produced in the nuclei of many eukaryotic species, including S. cerevisiae. [GOC:curators, PMID:10690410]
58 | GO:0001736 | 0.0433355149107182 | establishment of planar polarity | biological_process | Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates. [GOC:dph]
58 | GO:0001738 | 0.0433355149107182 | morphogenesis of a polarized epithelium | biological_process | The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis. [GOC:dph]
58 | GO:0002009 | 0.0433355149107182 | morphogenesis of an epithelium | biological_process | The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube. [GOC:dph, GOC:jl, GOC:tb, ISBN:[PHONE]]
58 | GO:0006101 | 0.0433355149107182 | citrate metabolic process | biological_process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. [ISBN:[PHONE]]
58 | GO:0007164 | 0.0433355149107182 | establishment of tissue polarity | biological_process | Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates. [GOC:jid]
58 | GO:0008216 | 0.0433355149107182 | [NAME] process | biological_process | The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:ai]
58 | GO:0008295 | 0.0433355149107182 | spermidine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:[PHONE]]
58 | GO:0009107 | 0.0433355149107182 | lipoate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipoate, 1,2-dithiolane-3-pentanoate, the anion derived from lipoic acid. [GOC:ai, ISBN:[PHONE]]
58 | [NAME] | 0.0433355149107182 | [NAME] and ethylene-dependent systemic resistance, ethylene mediated signaling pathway | biological_process | The series of molecular signals mediated by ethylene ([NAME]) involved in jasmonic acid/ethylene dependent systemic resistance. [GOC:jy]
58 | GO:0010495 | 0.0433355149107182 | long-distance posttranscriptional gene silencing | biological_process | A posttranscriptional gene silencing process in which the silencing signal originates in a tissue separate from the tissue in which the silencing takes place. [GOC:dph, GOC:tb, PMID:11590235, PMID:17785412]
58 | GO:0031125 | 0.0433355149107182 | rRNA 3'-end processing | biological_process | Any process involved in forming the mature 3' end of an rRNA molecule. [GOC:mah]
58 | GO:0042753 | 0.0433355149107182 | positive regulation of circadian rhythm | biological_process | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
58 | GO:0048729 | 0.0433355149107182 | tissue morphogenesis | biological_process | The process in which the anatomical structures of a tissue are generated and organized. [GOC:dph, GOC:jid]
58 | GO:0051365 | 0.0433355149107182 | cellular response to potassium ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of potassium ions. [GOC:sm]
58 | GO:0051446 | 0.0433355149107182 | positive regulation of meiotic cell cycle | biological_process | Any process that activates or increases the frequency, rate or extent of progression through the meiotic cell cycle. [GOC:ai, GOC:dph, GOC:tb]
58 | [NAME] | 0.0433355149107182 | simple leaf morphogenesis | biological_process | The leaf morphogenesis process which results in the shaping of a simple leaf. A simple leaf is a leaf in which the lamina is undivided. [GOC:dph, GOC:sdb_2009, GOC:tb]
58 | GO:0060919 | 0.0433355149107182 | auxin influx | biological_process | The process involved in the transport of auxin into the cell. [GOC:dph, GOC:tb]
58 | GO:0070542 | 0.0433355149107182 | response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [CHEBI:35366, GOC:lp]
58 | GO:0071398 | 0.0433355149107182 | cellular response to fatty acid | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fatty acid stimulus. [GOC:mah]
58 | GO:0022604 | 0.0434029683778905 | regulation of cell morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. [GOC:isa_complete]
58 | GO:0031347 | 0.0434090886150749 | regulation of defense response | biological_process | Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah]
58 | GO:0007031 | 0.0440310864640169 | peroxisome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah]
58 | GO:0010101 | 0.0467769419534539 | post-embryonic root morphogenesis | biological_process | The process in which the anatomical structures of the post-embryonic root are generated and organized. The post-embryonic root is the root formed after the embryonic phase has been completed. [GOC:tb]
58 | GO:0010102 | 0.0467769419534539 | lateral root morphogenesis | biological_process | The process in which the anatomical structures of a lateral root are generated and organized. A lateral root is one formed from pericycle cells located on the xylem radius of the root, as opposed to the initiation of the main root from the embryo proper. [GOC:tair_curators]
58 | GO:0006342 | 0.0474920451090437 | chromatin silencing | biological_process | Repression of transcription by altering the structure of chromatin, e.g. by conversion of large regions of DNA into an inaccessible state often called heterochromatin. [GOC:mah, PMID:10219245]
58 | GO:0045814 | 0.049106846286803 | negative regulation of gene expression, epigenetic | biological_process | Any epigenetic process that stops, prevents or reduces the rate of gene expression. [GOC:go_curators]
59 | GO:0010388 | 3.33180563780686e-06 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
59 | GO:0001510 | 2.66802370030711e-05 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
59 | GO:0006606 | 0.000634450264890222 | protein import into nucleus | biological_process | The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl]
59 | GO:0009640 | 0.000662803314574132 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
59 | GO:0006626 | 0.000727963108341663 | protein targeting to mitochondrion | biological_process | The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. [GOC:mcc, ISBN:[PHONE]]
59 | GO:0010971 | 0.000766632575545588 | positive regulation of G2/M transition of mitotic cell cycle | biological_process | Any process that increases the rate or extent of progression from G2 phase to M phase of the mitotic cell cycle. [GOC:dph, GOC:mtg_cell_cycle, GOC:tb]
59 | GO:0006406 | 0.00183000525726372 | mRNA export from nucleus | biological_process | The directed movement of mRNA from the nucleus to the cytoplasm. [GOC:ma]
59 | GO:0006635 | 0.00186548501244824 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
59 | GO:0051788 | 0.00198686043666946 | response to misfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a misfolded protein stimulus. [GOC:go_curators]
59 | GO:0043161 | 0.00214137405403915 | proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators]
59 | GO:0080129 | 0.00310582510371041 | proteasome core complex assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. [PMID:12401807, PMID:17971041]
59 | GO:0000003 | 0.00385081092413879 | reproduction | biological_process | The production by an organism of new individuals that contain some portion of their genetic material inherited from that organism. [GOC:go_curators, GOC:isa_complete, ISBN:[PHONE]]
59 | GO:0007062 | 0.0053019142689238 | sister chromatid cohesion | biological_process | The cell cycle process in which the sister chromatids of a replicated chromosome are associated with each other. [GOC:jh, GOC:mah, ISBN:[PHONE]]
59 | GO:0006310 | 0.00872349496570064 | DNA recombination | biological_process | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:[PHONE]]
59 | GO:0009407 | 0.00918840650414457 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. [GOC:go_curators]
59 | GO:0007292 | 0.0102421854094812 | female gamete generation | biological_process | Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction. [GOC:dph, ISBN:[PHONE]]
59 | GO:0022414 | 0.0109740559511454 | reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals by one or two organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. [GOC:dph, GOC:isa_complete]
59 | GO:0048863 | 0.0132414608687347 | stem cell differentiation | biological_process | The process in which a relatively unspecialized cell acquires specialized features of a stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. [CL:0000034, GOC:isa_complete]
59 | [NAME] | 0.0144428360954098 | meiotic chromosome segregation | biological_process | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle. [GOC:ai, GOC:mah]
59 | GO:0006094 | 0.0154758815826739 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
59 | GO:0002098 | 0.016149664214979 | tRNA wobble uridine modification | biological_process | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. [GOC:hjd, ISBN:155581073X]
59 | GO:0003156 | 0.016149664214979 | regulation of organ formation | biological_process | Any process that modulates the rate, frequency or extent of organ formation. Organ formation is the process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. [GOC:dph, GOC:mtg_heart, GOC:tb]
59 | GO:0010084 | 0.016149664214979 | specification of organ axis polarity | biological_process | The process in which the polarity of an organ axis is specified. [GOC:tb]
59 | GO:0048865 | 0.016149664214979 | stem cell fate commitment | biological_process | The process in which the developmental fate of a cell becomes restricted such that it will develop into a stem cell. [CL:0000034, GOC:isa_complete]
59 | GO:0048867 | 0.016149664214979 | stem cell fate determination | biological_process | The process in which a cell becomes capable of differentiating autonomously into a stem cell regardless of its environment; upon determination, the cell fate cannot be reversed. [CL:0000034, GOC:isa_complete]
59 | GO:0051791 | 0.016149664214979 | medium-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving medium-chain fatty acids, any fatty acid with a chain length of between C6 and C12. [CHEBI:59554, GOC:go_curators]
59 | GO:1900618 | 0.016149664214979 | regulation of shoot system morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of shoot morphogenesis. [GOC:TermGenie]
59 | GO:1901371 | 0.016149664214979 | regulation of leaf morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of leaf morphogenesis. [GOC:TermGenie]
59 | GO:2000025 | 0.016149664214979 | regulation of leaf formation | biological_process | Any process that modulates the frequency, rate or extent of leaf formation. [GOC:obol]
59 | GO:0019319 | 0.0168660714519416 | hexose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
59 | GO:0007276 | 0.0204576417352903 | gamete generation | biological_process | The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell. [GOC:ems, GOC:mtg_sensu]
59 | [NAME] | 0.0204576417352903 | gravitropism | biological_process | The orientation of plant parts under the stimulation of gravity. [ISBN:[PHONE]]
59 | GO:0046364 | 0.0223794750465762 | monosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
59 | GO:0007126 | 0.0237271771040341 | meiosis | biological_process | A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle. A meiotic cell cycle is the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations. [GOC:dph, GOC:mah, PMID:9334324]
59 | GO:0006396 | 0.0244542519406309 | RNA processing | biological_process | Any process involved in the conversion of one or more primary [NAME] transcripts into one or more mature RNA molecules. [GOC:mah]
59 | GO:0009629 | 0.0248835507413053 | response to gravity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus. [GOC:hb]
59 | GO:0048610 | 0.0265847698264626 | cellular process involved in reproduction | biological_process | A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism. [GOC:dph, GOC:jid]
59 | GO:0003006 | 0.0271925867437662 | developmental process involved in reproduction | biological_process | A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring. [GOC:dph, GOC:isa_complete]
59 | GO:0009606 | 0.027297284358611 | tropism | biological_process | The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it. [GOC:curators, ISBN:[PHONE]]
59 | GO:0048229 | 0.0280131239086783 | gametophyte development | biological_process | The process whose specific outcome is the progression of the gametophyte over time, from its formation to the mature structure. The gametophyte is the gamete-producing individual or phase in the life cycle having alternation of generations. An example of this process is found in Arabidopsis thaliana. [GOC:jid, PO:0009004]
59 | GO:0019953 | 0.0311727900435656 | sexual reproduction | biological_process | The regular alternation, in the life cycle of haplontic, diplontic and diplohaplontic organisms, of meiosis and fertilization which provides for the production offspring. In diplontic organisms there is a life cycle in which the products of meiosis behave directly as gametes, fusing to form a zygote from which the diploid, or sexually reproductive polyploid, adult organism will develop. In diplohaplontic organisms a haploid phase (gametophyte) exists in the life cycle between meiosis and fertilization (e.g. higher plants, many algae and [NAME]); the products of meiosis are spores that develop as haploid individuals from which haploid gametes develop to form a diploid zygote; diplohaplontic organisms show an alternation of haploid and diploid generations. In haplontic organisms meiosis occurs in the zygote, giving rise to four haploid cells (e.g. many algae and protozoa), only the zygote is diploid and this may form a resistant spore, tiding organisms over hard times. [ISBN:[PHONE]]
59 | GO:0002097 | 0.032041057772165 | tRNA wobble base modification | biological_process | The process in which the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally modified. [GOC:hjd, ISBN:155581073X]
59 | GO:0006750 | 0.032041057772165 | glutathione biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, GOC:al, GOC:pde, ISBN:[PHONE]]
59 | GO:0010582 | 0.032041057772165 | floral meristem determinacy | biological_process | The process in which a floral meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate). [PMID:18441215]
59 | GO:0015693 | 0.032041057772165 | magnesium ion transport | biological_process | The directed movement of magnesium ([NAME]) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
59 | GO:0019184 | 0.032041057772165 | nonribosomal peptide biosynthetic process | biological_process | The biosynthetic process in which peptide bond formation occurs in the absence of the translational machinery. Examples include the synthesis of antibiotic peptides, and glutathione. [ISBN:[PHONE]]
59 | GO:0051604 | 0.0335789045200211 | protein maturation | biological_process | Any process leading to the attainment of the full functional capacity of a protein. [GOC:ai]
59 | GO:0006200 | 0.0367837848068602 | ATP catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:ai]
59 | GO:0033044 | 0.0376143514437262 | regulation of chromosome organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of a chromosome. [GOC:mah]
59 | GO:0042138 | 0.0406199878993843 | meiotic DNA double-strand break formation | biological_process | The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I. This results in the initiation of meiotic recombination. [GOC:elh, GOC:jl, PMID:11529427]
59 | GO:0046034 | 0.0430943709456184 | ATP metabolic process | biological_process | The chemical reactions and pathways involving ATP, adenosine triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators]
59 | GO:0001709 | 0.0476782703706753 | cell fate determination | biological_process | A process involved in cell fate commitment. Once determination has taken place, a cell becomes committed to differentiate down a particular pathway regardless of its environment. [ISBN:[PHONE]]
59 | GO:0006271 | 0.0476782703706753 | DNA strand elongation involved in DNA replication | biological_process | The process in which a DNA strand is synthesized from template DNA during replication by the action of polymerases, which add nucleotides to the 3' end of the nascent DNA strand. [ISBN:071673706X, ISBN:[PHONE]]
59 | GO:0010022 | 0.0476782703706753 | meristem determinacy | biological_process | The process in which a meristem becomes determinate (i.e. ceases to produce lateral organs and may or may not terminally differentiate). [GOC:lr]
59 | GO:0010077 | 0.0476782703706753 | maintenance of inflorescence meristem identity | biological_process | The process in which an organism retains a population of inflorescence meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:dph, GOC:tb]
59 | GO:0010078 | 0.0476782703706753 | maintenance of root meristem identity | biological_process | The process in which an organism retains a population of root meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:dph, GOC:tb]
59 | GO:0010928 | 0.0476782703706753 | regulation of auxin mediated signaling pathway | biological_process | Any process that modulates the rate, frequency or extent of auxin mediated signaling pathway. Auxin mediated signaling pathway is the series of molecular signals generated in response to detection of auxin. [GOC:dph, GOC:tb]
59 | GO:0022616 | 0.0476782703706753 | DNA strand elongation | biological_process | The DNA metabolic process in which a DNA strand is synthesized by adding nucleotides to the 3' end of an existing DNA stand. [GOC:isa_complete]
59 | GO:0043043 | 0.0476782703706753 | peptide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide. [CHEBI:16670, GOC:dph, GOC:jl]
59 | GO:2000027 | 0.0476782703706753 | regulation of organ morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of organ morphogenesis. [GOC:obol]
59 | GO:0034655 | 0.0482834116439385 | nucleobase-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:mah]
60 | GO:0008284 | 0.000237935805632846 | positive regulation of cell proliferation | biological_process | Any process that activates or increases the rate or extent of cell proliferation. [GOC:go_curators]
60 | GO:0000956 | 0.000348906489143191 | nuclear-transcribed mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. [GOC:krc]
60 | GO:0006486 | 0.000750322387086488 | protein glycosylation | biological_process | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr]
60 | GO:0016482 | 0.0022094212065398 | cytoplasmic transport | biological_process | The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, or within the cytoplasm of a cell. [GOC:ai]
60 | GO:0051128 | 0.00339494146335492 | regulation of cellular component organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:ai]
60 | GO:0048825 | 0.00354649300942306 | cotyledon development | biological_process | The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
60 | [NAME] | 0.00368565187836165 | cell cycle process | biological_process | The cellular process that ensures successive accurate and complete genome replication and chromosome segregation. [GOC:isa_complete, GOC:mtg_cell_cycle]
60 | GO:0006511 | 0.00411759652135161 | ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators]
60 | GO:0017148 | 0.00564020584685089 | negative regulation of translation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA. [GOC:isa_complete]
60 | GO:0010228 | 0.0062502546933179 | vegetative to reproductive phase transition of meristem | biological_process | The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb]
60 | GO:0033365 | 0.00777659834139459 | protein localization to organelle | biological_process | A process in which a protein is transported to, or maintained in, a location within an organelle. [GOC:mah]
60 | GO:0070647 | 0.00933739731903536 | protein modification by small protein conjugation or removal | biological_process | A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein. [GOC:mah]
60 | [NAME] | 0.00934233775377492 | gravitropism | biological_process | The orientation of plant parts under the stimulation of gravity. [ISBN:[PHONE]]
60 | GO:0009640 | 0.00994186426185094 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
60 | GO:0006312 | 0.0103084991030801 | mitotic recombination | biological_process | The exchange, reciprocal or nonreciprocal, of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. [GOC:elh]
60 | GO:0042752 | 0.0103084991030801 | regulation of circadian rhythm | biological_process | Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:dph, GOC:jl, GOC:tb]
60 | GO:0007062 | 0.0111411800691418 | sister chromatid cohesion | biological_process | The cell cycle process in which the sister chromatids of a replicated chromosome are associated with each other. [GOC:jh, GOC:mah, ISBN:[PHONE]]
60 | GO:0090421 | 0.0116117966142232 | [NAME] initiation | biological_process | Initiation of a region of tissue in a plant embryo that is composed of one or more undifferentiated cells capable of undergoing mitosis and differentiation. [GOC:tb]
60 | GO:0006623 | 0.0120430937427841 | protein targeting to vacuole | biological_process | The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators]
60 | GO:0072665 | 0.0120430937427841 | protein localization to vacuole | biological_process | A process in which a protein is transported to, or maintained at, a location in a vacuole. [GOC:ecd]
60 | GO:0072666 | 0.0120430937427841 | establishment of protein localization to vacuole | biological_process | The directed movement of a protein to a specific location in a vacuole. [GOC:mah]
60 | GO:0007034 | 0.0129905980185106 | vacuolar transport | biological_process | The directed movement of substances into, out of or within a vacuole. [GOC:ai]
60 | GO:0010629 | 0.0142160514966366 | negative regulation of gene expression | biological_process | Any process that decreases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
60 | GO:0045892 | 0.0144410849099899 | negative regulation of transcription, DNA-dependent | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
60 | GO:0051253 | 0.0144410849099899 | negative regulation of RNA metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
60 | GO:0010498 | 0.0146161401811177 | proteasomal protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome. [GOC:tb]
60 | GO:0000278 | 0.0155573731322551 | mitotic cell cycle | biological_process | Progression through the phases of the mitotic cell cycle, the most common eukaryotic cell cycle, which canonically comprises four successive phases called G1, S, G2, and M and includes replication of the genome and the subsequent segregation of chromosomes into daughter cells. In some variant cell cycles nuclear replication or nuclear division may not be followed by cell division, or G1 and G2 phases may be absent. [GOC:mah, ISBN:[PHONE], Reactome:69278]
60 | GO:0045934 | 0.0165474900158714 | negative regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
60 | GO:0006259 | 0.0167123707458584 | DNA metabolic process | biological_process | Any cellular metabolic process involving deoxyribonucleic acid. This is one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides. [ISBN:[PHONE]]
60 | GO:0048609 | 0.0174258784351182 | multicellular organismal reproductive process | biological_process | The process, occurring above the cellular level, that is pertinent to the reproductive function of a multicellular organism. This includes the integrated processes at the level of tissues and organs. [GOC:dph, GOC:jid, GOC:tb]
60 | GO:0051172 | 0.017680353760742 | negative regulation of nitrogen compound metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
60 | GO:0048508 | 0.0177395199542443 | [NAME] development | biological_process | The process whose specific outcome is the progression of the embryonic meristem over time, from its formation to the mature structure. [GOC:jid]
60 | GO:0007059 | 0.0184371303599075 | chromosome segregation | biological_process | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the alignment of chromosomes at the metaphase plate, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. [GOC:ai, GOC:mah]
60 | GO:0032504 | 0.0194480085179901 | multicellular organism reproduction | biological_process | The biological process in which new individuals are produced by one or two multicellular organisms. The new individuals inherit some proportion of their genetic material from the parent or parents. [GOC:isa_complete, GOC:jid]
60 | GO:0009560 | 0.019672714946541 | embryo sac egg cell differentiation | biological_process | The process in which an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu]
60 | GO:0002119 | 0.0199872081869292 | nematode larval development | biological_process | The process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. [GOC:ems, GOC:kmv]
60 | GO:0002164 | 0.0199872081869292 | larval development | biological_process | The process whose specific outcome is the progression of the larva over time, from its formation to the mature structure. The larva is the early, immature form of an that at birth or hatching is fundamentally unlike its parent and must metamorphose before assuming the adult characters. [GOC:jid, ISBN:[PHONE]]
60 | GO:0010265 | 0.0199872081869292 | SCF complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex. [GOC:pz]
60 | GO:0031053 | 0.0199872081869292 | primary miRNA processing | biological_process | Any process involved in the conversion of a primary microRNA transcript into a pre-microRNA molecule. [GOC:sl, PMID:15211354]
60 | GO:0035278 | 0.0199872081869292 | negative regulation of translation involved in gene silencing by miRNA | biological_process | The process in which microRNAs (miRNAs) block the translation of target mRNAs into proteins. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically repress translation if the miRNA imperfectly base-pairs with the 3' untranslated regions of target mRNAs. [PMID:14744438, PMID:15196554]
60 | GO:0040033 | 0.0199872081869292 | negative regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that stops, prevents or reduces the rate that mRNAs are effectively translated into protein. [GOC:dph, GOC:ems, GOC:tb]
60 | GO:0045974 | 0.0199872081869292 | regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that modulates the frequency, rate or extent that mRNAs are effectively translated into protein. [GOC:dph, GOC:go_curators, GOC:tb]
60 | GO:0048015 | 0.0199872081869292 | phosphatidylinositol-mediated signaling | biological_process | A series of molecular signals in which a cell uses a phosphatidylinositol-mediated signaling to convert a signal into a response. Phosphatidylinositols include phosphatidylinositol (PtdIns) and its phosphorylated derivatives. [GOC:bf, GOC:ceb, ISBN:[PHONE]]
60 | GO:0048017 | 0.0199872081869292 | inositol lipid-mediated signaling | biological_process | A series of molecular signals in which a cell uses an inositol-containing lipid to convert a signal into a response. Inositol lipids include the phosphoinositides (phosphatidylinositol and its phosphorylated derivatives), ceramides containing inositol, and inositol glycolipids. [GOC:bf, GOC:ceb, PMID:16088939]
60 | GO:0048639 | 0.0199872081869292 | positive regulation of developmental growth | biological_process | Any process that activates, maintains or increases the rate of developmental growth. [GOC:go_curators]
60 | GO:0051512 | 0.0199872081869292 | positive regulation of unidimensional cell growth | biological_process | Any process that activates or increases the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
60 | GO:0061062 | 0.0199872081869292 | regulation of nematode larval development | biological_process | Any process that modulates the rate, frequency, or extent of nematode larval development, the process whose specific outcome is the progression of the nematode larva over time, from its formation to the mature structure. Nematode larval development begins with the newly hatched first-stage larva (L1) and ends with the end of the last larval stage (for example the fourth larval stage (L4) in C. elegans). Each stage of nematode larval development is characterized by proliferation of specific cell lineages and an increase in body size without alteration of the basic body plan. Nematode larval stages are separated by molts in which each stage-specific exoskeleton, or cuticle, is shed and replaced anew. [GOC:dph, GOC:kmv]
60 | GO:0080009 | 0.0199872081869292 | mRNA methylation | biological_process | The posttranscriptional addition of methyl groups to specific residues in an mRNA molecule. [PMID:18505803]
60 | GO:0007292 | 0.020958365636365 | female gamete generation | biological_process | Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction. [GOC:dph, ISBN:[PHONE]]
60 | GO:0044702 | 0.0223932194956163 | single organism reproductive process | biological_process | A biological process that directly contributes to the process of producing new individuals, involving a single organism. [GOC:jl]
60 | GO:0072594 | 0.0234772559283213 | establishment of protein localization to organelle | biological_process | The directed movement of a protein to a specific location on or in an organelle. Encompasses establishment of localization in the membrane or lumen of a membrane-bounded organelle. [GOC:mah]
60 | GO:0006605 | 0.0239188739765835 | protein targeting | biological_process | The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif. [GOC:ma]
60 | GO:0022412 | 0.0266106582973868 | cellular process involved in reproduction in multicellular organism | biological_process | A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular organism. [GOC:isa_complete]
60 | GO:0016197 | 0.0267671799525217 | endosomal transport | biological_process | The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. [ISBN:[PHONE]]
60 | GO:0051726 | 0.0291857508214673 | regulation of cell cycle | biological_process | Any process that modulates the rate or extent of progression through the cell cycle. [GOC:ai, GOC:dph, GOC:tb]
60 | GO:0051510 | 0.0320506514767383 | regulation of unidimensional cell growth | biological_process | Any process that modulates the frequency, rate or extent of unidimensional cell growth, the process in which a cell irreversibly increases in size in one [spatial] dimension or along one axis. [GOC:ai]
60 | GO:0033043 | 0.0335999845258405 | regulation of organelle organization | biological_process | Any process that modulates the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of an organelle. [GOC:mah]
60 | GO:0022604 | 0.0344676688932321 | regulation of cell morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis. Cell morphogenesis is the developmental process in which the shape of a cell is generated and organized. [GOC:isa_complete]
60 | GO:0051130 | 0.0348487003955282 | positive regulation of cellular component organization | biological_process | Any process that activates or increases the frequency, rate or extent of a process involved in the formation, arrangement of constituent parts, or disassembly of cell structures, including the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope. [GOC:ai]
60 | GO:0009553 | 0.0350043917397697 | embryo sac development | biological_process | The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb]
60 | GO:0006886 | 0.0359707804178663 | intracellular protein transport | biological_process | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah]
60 | GO:0006487 | 0.0369766512321213 | protein N-linked glycosylation | biological_process | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan. [GOC:pr, RESID:AA0151, RESID:AA0156, RESID:AA0327]
60 | GO:0010048 | 0.0369766512321213 | vernalization response | biological_process | The process of thermal induction in plants in which flowering is promoted by exposure to low temperatures. [GOC:tair_curators, ISBN:[PHONE]]
60 | GO:0044085 | 0.0377358203657312 | cellular component biogenesis | biological_process | A process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a cellular component. Includes biosynthesis of constituent macromolecules, and those macromolecular modifications that are involved in synthesis or assembly of the cellular component. [GOC:jl, GOC:mah]
60 | GO:0050826 | 0.0395769552466785 | response to freezing | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius. [GOC:jl]
60 | GO:0000184 | 0.0395780604141104 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | biological_process | The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. [GOC:krc, GOC:ma, PMID:10025395]
60 | GO:0000212 | 0.0395780604141104 | meiotic spindle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle. [GOC:mah]
60 | GO:0006423 | 0.0395780604141104 | cysteinyl-tRNA aminoacylation | biological_process | The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
60 | GO:0010071 | 0.0395780604141104 | root meristem specification | biological_process | The specification of a meristem which will give rise to a primary or lateral root. [GOC:ascb_2009, GOC:dph, GOC:tb]
60 | GO:0010165 | 0.0395780604141104 | response to X-ray | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of X-ray radiation. An X-ray is a form of electromagnetic radiation with a wavelength in the range of 10 nanometers to 100 picometers (corresponding to frequencies in the range 30 PHz to 3 EHz). [GOC:sm, Wikipedia:X-ray]
60 | GO:0010387 | 0.0395780604141104 | signalosome assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a signalosome. [PMID:17307927]
60 | GO:0010587 | 0.0395780604141104 | miRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. [PMID:17993620]
60 | GO:0030307 | 0.0395780604141104 | positive regulation of cell growth | biological_process | Any process that activates or increases the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
60 | GO:0042753 | 0.0395780604141104 | positive regulation of circadian rhythm | biological_process | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
60 | GO:0042787 | 0.0395780604141104 | protein ubiquitination involved in ubiquitin-dependent protein catabolic process | biological_process | The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein. [GOC:go_curators]
60 | GO:0043157 | 0.0395780604141104 | response to cation stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment. [GOC:jl, PMID:14762213]
60 | GO:0046740 | 0.0395780604141104 | spread of virus in host, cell to cell | biological_process | The process of viral dissemination within an infected host organism where infectious virion particles are passed from infected to uninfected host cells. [ISBN:[PHONE]]
60 | GO:0048826 | 0.0395780604141104 | cotyledon morphogenesis | biological_process | The process in which the anatomical structures of the cotyledon are generated and organized. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
60 | GO:0080120 | 0.0395780604141104 | CAAX-box protein maturation | biological_process | A series of specific posttranslational modifications to the CAAX box region of CAAX box proteins. CAAX box proteins are eukaryotic proteins that contain a CAAX motif where the C is a cysteine, the two A residues are aliphatic amino acids and the X can be one of several amino acids. The CAAX-box proteins undergo three sequential, enzymatic, post-translational modifications essential to their targeting: First, the proteins are prenylated by one of two prenyltransferases called farnesyltransferase and geranylgeranyltransferase-I. Prenylation results in the covalent attachment of either farnesyl or geranylgeranyl isoprenoid groups to the cysteine in the CAAX box motif. Prenylation is followed by proteolytic removal of the last three amino acids of the protein (AAX). Finally, the newly exposed carboxylate group of the isoprenylcysteine is methylated by an ER-associated prenyl-dependent carboxylmethyltransferase. [PMID:12039957, PMID:17114793, PMID:18641086]
60 | GO:0080140 | 0.0395780604141104 | regulation of jasmonic acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving jasmonic acid. [GOC:dhl]
60 | GO:0080141 | 0.0395780604141104 | regulation of jasmonic acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of jasmonic acid. [GOC:dhl]
60 | GO:0090306 | 0.0395780604141104 | spindle assembly involved in meiosis | biological_process | The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of meiosis. [GOC:tb, GOC:vw]
60 | GO:0044070 | 0.0396108539250452 | regulation of anion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
60 | GO:0017038 | 0.0398791750963223 | protein import | biological_process | The directed movement of proteins into a cell or organelle. [GOC:ai]
60 | GO:0007276 | 0.0404276411010691 | gamete generation | biological_process | The generation and maintenance of gametes in a multicellular organism. A gamete is a haploid reproductive cell. [GOC:ems, GOC:mtg_sensu]
60 | GO:0048573 | 0.0423939353140146 | photoperiodism, flowering | biological_process | A change from the vegetative to the reproductive phase as a result of detection of, or exposure to, a period of light or dark of a given length. The length of the period of light or dark required to initiate the change is set relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
60 | GO:0051276 | 0.0433353033295141 | chromosome organization | biological_process | A process that is carried out at the cellular level that results in the assembly, arrangement of constituent parts, or disassembly of chromosomes, structures composed of a very long molecule of DNA and associated proteins that carries hereditary information. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
60 | GO:0030258 | 0.044191860458718 | lipid modification | biological_process | The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid. [GOC:mah]
60 | GO:0006338 | 0.0443164923142947 | chromatin remodeling | biological_process | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. [GOC:jid, PMID:12697820]
60 | GO:0010162 | 0.044413582817904 | seed dormancy process | biological_process | A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors. [GOC:lr, GOC:PO_curators, ISBN:[PHONE], PO_REF:00009]
60 | GO:0022611 | 0.044413582817904 | dormancy process | biological_process | A developmental process in which dormancy (sometimes called a dormant state) is induced, maintained or broken. Dormancy is a suspension of most physiological activity and growth that can be reactivated. [GOC:isa_complete, GOC:PO_curators, PO_REF:00009]
60 | GO:0001558 | 0.0450485206348726 | regulation of cell growth | biological_process | Any process that modulates the frequency, rate, extent or direction of cell growth. [GOC:go_curators]
60 | GO:0010558 | 0.0454311013583363 | negative regulation of macromolecule biosynthetic process | biological_process | Any process that decreases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
60 | GO:2000113 | 0.0454311013583363 | negative regulation of cellular macromolecule biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of cellular macromolecule biosynthetic process. [GOC:obol]
60 | GO:0007126 | 0.0464865512842849 | meiosis | biological_process | A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle. A meiotic cell cycle is the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations. [GOC:dph, GOC:mah, PMID:9334324]
60 | GO:0009648 | 0.0464865512842849 | photoperiodism | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a period of light or dark of a given length, measured relative to a particular duration known as the 'critical day length'. The critical day length varies between species. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
60 | GO:0000338 | 0.0479180761757506 | protein deneddylation | biological_process | The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc]
60 | GO:0010388 | 0.0479180761757506 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
60 | GO:0046364 | 0.049280745506716 | monosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
61 | GO:0010375 | 0.00177779225369876 | stomatal complex patterning | biological_process | The regionalization process of establishing the non-random spatial arrangement of stomatal complex on the surface of a leaf. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [PMID:17259259]
61 | GO:2000038 | 0.0026431576090693 | regulation of stomatal complex development | biological_process | Any process that modulates the frequency, rate or extent of stomatal complex development. [GOC:obol]
61 | [NAME] | 0.00904554965879715 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
61 | GO:0000161 | 0.0135913015670342 | MAPK cascade involved in osmosensory signaling pathway | biological_process | A MAPK cascade involved in signal transduction in response to change in osmotic conditions. [PMID:9561267]
61 | GO:0000169 | 0.0135913015670342 | activation of MAPK activity involved in osmosensory signaling pathway | biological_process | Any process that initiates the activity of the inactive enzyme MAP kinase activity during osmolarity sensing. [PMID:9561267]
61 | GO:0006573 | 0.0135913015670342 | [NAME] process | biological_process | The chemical reactions and pathways involving valine, 2-amino-3-methylbutanoic acid. [GOC:ai]
61 | GO:0006574 | 0.0135913015670342 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of valine, 2-amino-3-methylbutanoic acid. [GOC:ai]
61 | GO:0007032 | 0.0135913015670342 | endosome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of endosomes. [GOC:dph, GOC:jl, GOC:mah]
61 | GO:0010248 | 0.0135913015670342 | establishment or maintenance of transmembrane electrochemical gradient | biological_process | The directed movement of ions to establish or maintain an electrochemical gradient across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:sm]
61 | GO:0015680 | 0.0135913015670342 | intracellular copper ion transport | biological_process | The directed movement of copper (Cu) ions within a cell. [GOC:ai]
61 | GO:0046967 | 0.0135913015670342 | cytosol to ER transport | biological_process | The directed movement of substances from the cytosol to the endoplasmic reticulum of a cell. [GOC:ai]
61 | GO:0051211 | 0.0135913015670342 | anisotropic cell growth | biological_process | The process in which a cell irreversibly increases in size in one or more axes, where the growth rate varies according to the direction of growth. Growth may be limited to a particular axis, axes, or to particular locations on the surface of the cell. [GOC:ai]
61 | GO:0051974 | 0.0135913015670342 | negative regulation of telomerase activity | biological_process | Any process that stops or reduces the activity of the enzyme telomerase, which catalyzes of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). [GOC:ai]
61 | GO:0080136 | 0.0135913015670342 | priming of cellular response to stress | biological_process | The process that enables cells to respond in a more rapid and robust manner than nonprimed cells to much lower levels of a stimulus indicating the organism is under stress. [PMID:19318610]
61 | GO:0009860 | 0.0215009214188228 | pollen tube growth | biological_process | Growth of pollen via tip extension of the intine wall. [ISBN:[PHONE]]
61 | GO:0006623 | 0.0228153738486053 | protein targeting to vacuole | biological_process | The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators]
61 | GO:0072665 | 0.0228153738486053 | protein localization to vacuole | biological_process | A process in which a protein is transported to, or maintained at, a location in a vacuole. [GOC:ecd]
61 | GO:0072666 | 0.0228153738486053 | establishment of protein localization to vacuole | biological_process | The directed movement of a protein to a specific location in a vacuole. [GOC:mah]
61 | GO:0009611 | 0.0232101014782678 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
61 | GO:0007034 | 0.0241727966880755 | vacuolar transport | biological_process | The directed movement of substances into, out of or within a vacuole. [GOC:ai]
61 | GO:0006598 | 0.0242571288659493 | polyamine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of polyamines, any organic compound containing two or more amino groups. [ISBN:[PHONE]]
61 | GO:0006624 | 0.0270000236792087 | vacuolar protein processing | biological_process | Protein processing that takes place in the vacuole. Most protein processing in the vacuole represents proteolytic cleavage of precursors to form active enzymes. [GOC:mah]
61 | GO:0006657 | 0.0270000236792087 | CDP-choline pathway | biological_process | The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine. [ISBN:[PHONE], MetaCyc:PWY3O-450]
61 | GO:0009901 | 0.0270000236792087 | anther dehiscence | biological_process | The dehiscence of an anther to release the pollen grains contained within it. [GOC:tb]
61 | GO:0010120 | 0.0270000236792087 | camalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin. [GOC:pz]
61 | GO:0051972 | 0.0270000236792087 | regulation of telomerase activity | biological_process | Any process that modulates the frequency, rate or extent of telomerase activity, the catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Telomerases catalyze extension of the 3'- end of a DNA strand by one deoxynucleotide at a time using an internal RNA template that encodes the telomeric repeat sequence. [EC:2.-.-.-, GOC:ai]
61 | GO:0052317 | 0.0270000236792087 | [NAME] process | biological_process | The chemical reactions and pathways involving camalexin, an indole phytoalexin. [GOC:ai]
61 | GO:0080086 | 0.0270000236792087 | stamen filament development | biological_process | The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen. [PMID:19139039, PO:0009067]
61 | GO:0034440 | 0.027996347700016 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
61 | GO:0048868 | 0.0316031002068648 | [NAME] | biological_process | The process whose specific outcome is the progression of a pollen tube over time, from its initial formation to a mature structure. [GOC:isa_complete]
61 | [NAME] | 0.0365723048688597 | cellular biogenic amine metabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
61 | GO:0006595 | 0.0383989904154181 | polyamine metabolic process | biological_process | The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. [ISBN:[PHONE]]
61 | GO:0006656 | 0.0402285902160494 | phosphatidylcholine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. [ISBN:[PHONE]]
61 | GO:0006878 | 0.0402285902160494 | cellular copper ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of copper ions at the level of a cell. [GOC:ai, GOC:mah]
61 | GO:0009700 | 0.0402285902160494 | indole phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:sm, ISBN:[PHONE]]
61 | GO:0009900 | 0.0402285902160494 | dehiscence | biological_process | The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it. [ISBN:[PHONE]]
61 | GO:0010031 | 0.0402285902160494 | circumnutation | biological_process | The organismal movement by which the tip of a plant organ follows a spiral pattern as a consequence of growth. [GOC:mtg_MIT_16mar07, ISBN:[PHONE]]
61 | GO:0015840 | 0.0402285902160494 | urea transport | biological_process | The directed movement of urea into, out of or within the cell. [NAME] is the water-soluble compound H2N-CO-NH2. [GOC:ai, ISBN:[PHONE]]
61 | GO:0046217 | 0.0402285902160494 | indole phytoalexin metabolic process | biological_process | The chemical reactions and pathways involving indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:ai]
61 | GO:0046470 | 0.0402285902160494 | phosphatidylcholine metabolic process | biological_process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. [ISBN:[PHONE]]
61 | GO:0047484 | 0.0402285902160494 | regulation of response to osmotic stress | biological_process | Any process that modulates the rate or extent of the response to osmotic stress. [GOC:ai]
61 | GO:0050879 | 0.0402285902160494 | multicellular organismal movement | biological_process | Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism. [GOC:dph, GOC:mtg_muscle, GOC:tb]
61 | GO:0052314 | 0.0402285902160494 | [NAME] process | biological_process | The chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
61 | GO:0052315 | 0.0402285902160494 | phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
61 | GO:0071918 | 0.0402285902160494 | [NAME] | biological_process | The process in which urea, the water-soluble compound H2N-CO-NH2, is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
61 | GO:2000037 | 0.0402285902160494 | regulation of stomatal complex patterning | biological_process | Any process that modulates the frequency, rate or extent of stomatal complex patterning. [GOC:obol]
61 | GO:2000123 | 0.0402285902160494 | positive regulation of stomatal complex development | biological_process | Any process that activates or increases the frequency, rate or extent of stomatal complex development. [GOC:obol]
61 | GO:0009725 | 0.0423824031775629 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
61 | GO:0030258 | 0.0424413169319855 | lipid modification | biological_process | The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid. [GOC:mah]
61 | GO:0045595 | 0.045691121204016 | regulation of cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of cell differentiation, the process in which relatively unspecialized cells acquire specialized structural and functional features. [GOC:go_curators]
61 | GO:0044106 | 0.0476382676116668 | cellular amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl]
62 | GO:0006412 | 0.00107283567426763 | translation | biological_process | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]
62 | GO:0001510 | 0.00128868017239219 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
62 | GO:0006457 | 0.00197930542386645 | protein folding | biological_process | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb]
62 | GO:0016139 | 0.00277703078824192 | glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [GOC:go_curators]
62 | GO:0046477 | 0.00277703078824192 | glycosylceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai]
62 | GO:0046129 | 0.00558371075907853 | purine ribonucleoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. [GOC:ai]
62 | GO:0006164 | 0.00613885832483179 | purine nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0010204 | 0.00674497641995492 | defense response signaling pathway, resistance gene-independent | biological_process | A series of molecular signals that is activated during defense response and does not depend upon R-genes. [GOC:mah, GOC:sm]
62 | GO:0042254 | 0.00855826334078859 | ribosome biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma]
62 | GO:0009152 | 0.0102458345315035 | purine ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a purine ribonucleotide, a compound consisting of ribonucleoside (a purine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0006754 | 0.0122334995959795 | ATP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0009145 | 0.0122334995959795 | purine nucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of purine nucleoside triphosphate, a compound consisting of a purine base linked to a ribose or deoxyribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0009201 | 0.0122334995959795 | ribonucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a ribonucleoside triphosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0009206 | 0.0122334995959795 | purine ribonucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of purine ribonucleoside triphosphate, a compound consisting of a purine base linked to a ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0006312 | 0.0132159768465774 | mitotic recombination | biological_process | The exchange, reciprocal or nonreciprocal, of genetic material between one DNA molecule and a homologous region of DNA that occurs during mitotic cell cycles. [GOC:elh]
62 | GO:0006839 | 0.0135340781946798 | mitochondrial transport | biological_process | Transport of substances into, out of or within a mitochondrion. [GOC:ai]
62 | GO:0072594 | 0.0142912666152161 | establishment of protein localization to organelle | biological_process | The directed movement of a protein to a specific location on or in an organelle. Encompasses establishment of localization in the membrane or lumen of a membrane-bounded organelle. [GOC:mah]
62 | GO:0009142 | 0.0155047027631645 | nucleoside triphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a nucleoside triphosphate, a compound consisting of a nucleobase linked to a deoxyribose or ribose sugar esterified with triphosphate on the sugar. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0006626 | 0.0163984512495608 | protein targeting to mitochondrion | biological_process | The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. [GOC:mcc, ISBN:[PHONE]]
62 | GO:0070585 | 0.0163984512495608 | protein localization to mitochondrion | biological_process | A process in which a protein is transported to, or maintained in, a location within the mitochondrion. [GOC:ecd]
62 | GO:0072655 | 0.0163984512495608 | establishment of protein localization to mitochondrion | biological_process | The directed movement of a protein to a specific location in the mitochondrion. [GOC:mah]
62 | GO:0009965 | 0.0175131353748919 | leaf morphogenesis | biological_process | The process in which the anatomical structures of the leaf are generated and organized. [GOC:go_curators]
62 | GO:0000375 | 0.017662647319418 | RNA splicing, via transesterification reactions | biological_process | Splicing of RNA via a series of two transesterification reactions. [GOC:krc]
62 | GO:0000377 | 0.017662647319418 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process | Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure. [GOC:krc, PMID:11377794]
62 | GO:0031123 | 0.019105252446314 | RNA 3'-end processing | biological_process | Any process involved in forming the mature 3' end of an RNA molecule. [GOC:mah]
62 | GO:0000740 | 0.0219059801727613 | nuclear membrane fusion | biological_process | The joining of 2 or more lipid bilayer membranes that surround the nucleus. [GOC:elh]
62 | GO:0006458 | 0.0219059801727613 | 'de novo' protein folding | biological_process | The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure. [GOC:mb]
62 | GO:0008360 | 0.0219059801727613 | regulation of cell shape | biological_process | Any process that modulates the surface configuration of a cell. [GOC:dph, GOC:go_curators, GOC:tb]
62 | GO:0010198 | 0.0219059801727613 | synergid death | biological_process | Synergid cells undergo degeneration and death in response to penetration by the pollen tube. It is an active process that involves a dramatic decrease in cell volume, collapse of the vacuoles, and complete disintegration of the plasma membrane and most organelles. [GOC:isa_complete, GOC:sm, PMID:12215516]
62 | GO:0010481 | 0.0219059801727613 | epidermal cell division | biological_process | Any process resulting in the physical partitioning and separation of an epidermal cell, any of the cells making up the epidermis, into daughter cells. [PMID:17450124]
62 | GO:0010482 | 0.0219059801727613 | regulation of epidermal cell division | biological_process | Any process that modulates the frequency, rate or extent of the physical partitioning and separation of an epidermal cell into daughter cells. An epidermal cell is any of the cells that make up the epidermis. [PMID:17450124]
62 | GO:0031128 | 0.0219059801727613 | developmental induction | biological_process | Signaling at short range between cells or tissues of different ancestry and developmental potential that results in one cell or tissue effecting a developmental change in the other. [GOC:mah]
62 | GO:0031129 | 0.0219059801727613 | inductive cell-cell signaling | biological_process | Signaling at short range between cells of different ancestry and developmental potential that results in one cell or group of cells effecting a developmental change in the other. This is often done by secretion of proteins by one cell which affects the neighboring cells and causes them to adopt a certain fate. [GOC:mah]
62 | GO:0043335 | 0.0219059801727613 | protein unfolding | biological_process | The process of assisting in the disassembly of non-covalent linkages in a protein or protein aggregate, often where the proteins are in a non-functional or denatured state. [GOC:mlg]
62 | GO:0045168 | 0.0219059801727613 | cell-cell signaling involved in cell fate commitment | biological_process | Signaling at long or short range between cells that results in the commitment of a cell to a certain fate. [GOC:dph, GOC:go_curators, GOC:tb]
62 | GO:0046369 | 0.0219059801727613 | galactose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactose, the aldohexose galacto-hexose. [ISBN:[PHONE]]
62 | GO:0051084 | 0.0219059801727613 | 'de novo' posttranslational protein folding | biological_process | The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis. [GOC:rb]
62 | GO:0051085 | 0.0219059801727613 | chaperone mediated protein folding requiring cofactor | biological_process | The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release. [GOC:rb]
62 | GO:0090174 | 0.0219059801727613 | [NAME] fusion | biological_process | The joining of two lipid bilayers to form a single organelle membrane. [GOC:ascb_2009, GOC:dph, GOC:tb]
62 | GO:2000039 | 0.0219059801727613 | regulation of trichome morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of trichome morphogenesis. [GOC:obol]
62 | GO:0009560 | 0.0265146352070738 | embryo sac egg cell differentiation | biological_process | The process in which an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu]
62 | GO:0007292 | 0.0282064551749657 | female gamete generation | biological_process | Generation of the female gamete; specialised haploid cells produced by meiosis and along with a male gamete takes part in sexual reproduction. [GOC:dph, ISBN:[PHONE]]
62 | GO:0007005 | 0.0299613207419962 | mitochondrion organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
62 | GO:0009408 | 0.0302814040088946 | response to heat | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr]
62 | GO:0016197 | 0.0317277719504277 | endosomal transport | biological_process | The directed movement of substances into, out of or mediated by an endosome, a membrane-bounded organelle that carries materials newly ingested by endocytosis. It passes many of the materials to lysosomes for degradation. [ISBN:[PHONE]]
62 | GO:0006417 | 0.032104610983259 | regulation of translation | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA. [GOC:isa_complete]
62 | GO:0000302 | 0.0325819921031555 | response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:krc]
62 | GO:0006397 | 0.033661425636268 | mRNA processing | biological_process | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah]
62 | GO:0033365 | 0.0354500610706429 | protein localization to organelle | biological_process | A process in which a protein is transported to, or maintained in, a location within an organelle. [GOC:mah]
62 | GO:0022412 | 0.0356071496901633 | cellular process involved in reproduction in multicellular organism | biological_process | A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular organism. [GOC:isa_complete]
62 | GO:0009260 | 0.0364852948361881 | ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a ribonucleotide, a compound consisting of ribonucleoside (a base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
62 | GO:0046390 | 0.0364852948361881 | ribose phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of ribose phosphate, any phosphorylated ribose sugar. [GOC:ai]
62 | GO:0009909 | 0.0410749004602592 | regulation of flower development | biological_process | Any process that modulates the frequency, rate or extent of flower development. [GOC:go_curators]
62 | GO:0008380 | 0.0413666650897208 | RNA splicing | biological_process | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah]
62 | GO:0006396 | 0.0414973876273697 | RNA processing | biological_process | Any process involved in the conversion of one or more primary [NAME] transcripts into one or more mature RNA molecules. [GOC:mah]
62 | GO:0000447 | 0.0433355149107182 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage between the SSU-rRNA and the 5.8S rRNA of an rRNA molecule originally produced as a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410]
62 | GO:0000460 | 0.0433355149107182 | maturation of 5.8S rRNA | biological_process | Any process involved in the maturation of a precursor 5.8S ribosomal RNA (rRNA) molecule into a mature 5.8S rRNA molecule. [GOC:curators]
62 | GO:0000461 | 0.0433355149107182 | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage at the 3'-end of the SSU-rRNA from an originally tricistronic rRNA transcript that contained the Small Subunit (SSU) rRNA, the 5.8S rRNA, and the Large Subunit (LSU) rRNA in that order from 5' to 3' along the primary transcript, to produce the mature end of the SSU-rRNA. [GOC:krc, PMID:10690410]
62 | [NAME] | 0.0433355149107182 | maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Any process involved in the maturation of an rRNA molecule originally produced as part of a tricistronic rRNA transcript that contained the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [GOC:curators, PMID:10690410]
62 | GO:0000479 | 0.0433355149107182 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | biological_process | Endonucleolytic cleavage of a pre-rRNA molecule originally produced as a tricistronic rRNA transcript that contains the Small SubUnit (SSU) rRNA, the 5.8S rRNA, and the Large SubUnit (LSU) rRNA, in that order, from 5' to 3' along the primary transcript. [NAME] ribosomal RNA transcripts with three genes, in this order, are produced in the nuclei of many eukaryotic species, including S. cerevisiae. [GOC:curators, PMID:10690410]
62 | GO:0006101 | 0.0433355149107182 | citrate metabolic process | biological_process | The chemical reactions and pathways involving citrate, 2-hydroxy-1,2,3-propanetricarboyxlate. Citrate is widely distributed in nature and is an important intermediate in the TCA cycle and the glyoxylate cycle. [ISBN:[PHONE]]
62 | GO:0006121 | 0.0433355149107182 | mitochondrial electron transport, succinate to ubiquinone | biological_process | The transfer of electrons from succinate to ubiquinone that occurs during oxidative phosphorylation, mediated by the multisubunit enzyme known as complex II. [ISBN:[PHONE]]
62 | GO:0006166 | 0.0433355149107182 | purine ribonucleoside salvage | biological_process | Any process which produces a purine nucleoside from derivatives of it, without de novo synthesis. [GOC:jl]
62 | GO:0006169 | 0.0433355149107182 | adenosine salvage | biological_process | Any process that generates adenosine, adenine riboside, from derivatives of it without de novo synthesis. [GOC:jl]
62 | GO:0007178 | 0.0433355149107182 | [NAME] receptor protein serine/threonine kinase signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling]
62 | GO:0010071 | 0.0433355149107182 | root meristem specification | biological_process | The specification of a meristem which will give rise to a primary or lateral root. [GOC:ascb_2009, GOC:dph, GOC:tb]
62 | GO:0010623 | 0.0433355149107182 | developmental programmed cell death | biological_process | The activation of endogenous cellular processes that result in the death of a cell as part of its development. [GOC:dph, GOC:tb]
62 | GO:0018195 | 0.0433355149107182 | peptidyl-arginine modification | biological_process | The modification of peptidyl-arginine. [GOC:go_curators]
62 | GO:0018216 | 0.0433355149107182 | peptidyl-arginine methylation | biological_process | The addition of a methyl group to an arginine residue in a protein. [GOC:mah]
62 | GO:0019433 | 0.0433355149107182 | triglyceride catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a triglyceride, any triester of glycerol. [ISBN:[PHONE]]
62 | GO:0030856 | 0.0433355149107182 | regulation of epithelial cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of epithelial cell differentiation. [GOC:mah]
62 | GO:0031125 | 0.0433355149107182 | rRNA 3'-end processing | biological_process | Any process involved in forming the mature 3' end of an rRNA molecule. [GOC:mah]
62 | GO:0035246 | 0.0433355149107182 | peptidyl-arginine N-methylation | biological_process | The addition of a methyl group onto a nitrogen atom of an arginine residue in a protein. [GOC:bf]
62 | GO:0042814 | 0.0433355149107182 | monopolar cell growth | biological_process | Polarized growth from one end of a cell. [GOC:vw]
62 | GO:0043174 | 0.0433355149107182 | nucleoside salvage | biological_process | Any process which produces a nucleotide, a nucleobase linked to either beta-D-ribofuranose (ribonucleoside) or 2-deoxy-beta-D-ribofuranose (a deoxyribonucleotide), from derivatives of it without de novo synthesis. [GOC:jl]
62 | GO:0045604 | 0.0433355149107182 | regulation of epidermal cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of epidermal cell differentiation. [GOC:go_curators]
62 | GO:0045682 | 0.0433355149107182 | regulation of epidermis development | biological_process | Any process that modulates the frequency, rate or extent of epidermis development. [GOC:go_curators]
62 | GO:0046086 | 0.0433355149107182 | adenosine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of adenosine, adenine riboside, a ribonucleoside found widely distributed in cells of every type as the free nucleoside and in combination in nucleic acids and various nucleoside coenzymes. [GOC:go_curators]
62 | GO:0046461 | 0.0433355149107182 | neutral lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of neutral lipids, lipids only soluble in solvents of very low polarity. [GOC:ai]
62 | GO:0046464 | 0.0433355149107182 | acylglycerol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids. [GOC:ai]
62 | GO:0046503 | 0.0433355149107182 | glycerolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycerolipids, any lipid with a glycerol backbone. [GOC:ai]
62 | GO:0048530 | 0.0433355149107182 | fruit morphogenesis | biological_process | The process in which the anatomical structures of a fruit are generated and organized. A fruit is a reproductive body of a seed plant. [GOC:sm]
62 | GO:0080086 | 0.0433355149107182 | stamen filament development | biological_process | The process whose specific outcome is the progression of the filament over time, from its formation to the mature structure. Filament is the stalk of a stamen. [PMID:19139039, PO:0009067]
63 | GO:0006536 | 0.00378597387161401 | glutamate metabolic process | biological_process | The chemical reactions and pathways involving glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators]
63 | GO:0009065 | 0.00524412312789779 | glutamine family amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. [GOC:ai]
63 | GO:0016926 | 0.00834038256234 | protein desumoylation | biological_process | The process in which a SUMO protein (small ubiquitin-related modifier) is cleaved from its target protein. [GOC:jl, PMID:11265250]
63 | GO:0010467 | 0.0106515544531705 | gene expression | biological_process | The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
63 | GO:0080022 | 0.0108843563215662 | primary root development | biological_process | The process whose specific outcome is the progression of the primary root over time, from its formation to the mature structure. The primary root develops directly from the embryonic radicle. [GOC:dhl]
63 | GO:0050665 | 0.0113155949336915 | hydrogen peroxide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:ai]
63 | GO:0016441 | 0.0147317341555332 | posttranscriptional gene silencing | biological_process | The inactivation of gene expression by a posttranscriptional mechanism. [GOC:mah, PMID:15020054]
63 | GO:0010608 | 0.0148655874624438 | posttranscriptional regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression after the production of an RNA transcript. [GOC:dph, GOC:tb]
63 | GO:0009738 | 0.0160913547047998 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
63 | GO:0001778 | 0.0163095618805423 | plasma membrane repair | biological_process | The resealing of a cell plasma membrane after cellular wounding due to, for instance, mechanical stress. [GOC:add, PMID:12925704]
63 | GO:0015846 | 0.0163095618805423 | polyamine transport | biological_process | The directed movement of polyamines, organic compounds containing two or more amino groups, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc, ISBN:[PHONE]]
63 | GO:0019544 | 0.0163095618805423 | arginine catabolic process to glutamate | biological_process | The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including glutamate. [GOC:go_curators]
63 | GO:0032011 | 0.0163095618805423 | ARF protein signal transduction | biological_process | A series of molecular signals within the cell that are mediated by a member of the ARF family of proteins switching to a GTP-bound active state. [GOC:mah]
63 | GO:0032012 | 0.0163095618805423 | regulation of ARF protein signal transduction | biological_process | Any process that modulates the frequency, rate or extent of ARF protein signal transduction. [GOC:mah]
63 | GO:0032312 | 0.0163095618805423 | regulation of ARF GTPase activity | biological_process | Any process that modulates the activity of the GTPase ARF. [GOC:mah]
63 | GO:0032850 | 0.0163095618805423 | positive regulation of ARF GTPase activity | biological_process | Any process that activates or increases the activity of the GTPase ARF. [GOC:mah]
63 | GO:0032856 | 0.0163095618805423 | activation of [NAME] GTPase activity | biological_process | Any process that initiates the activity of an inactive GTPase of the [NAME] superfamily through the replacement of GDP by GTP. [GOC:dph, GOC:mah, GOC:tb]
63 | GO:0032857 | 0.0163095618805423 | activation of ARF GTPase activity | biological_process | Any process that initiates the activity of the inactive enzyme ARF GTPase through the replacement of GDP by GTP. [GOC:dph, GOC:mah, GOC:tb]
63 | GO:0035280 | 0.0163095618805423 | miRNA loading onto RISC involved in gene silencing by miRNA | biological_process | The transfer of a microRNA (miRNA) strand from a miRNA:miRNA duplex onto the RNA-initiated silencing complex (RISC). [PMID:14744438]
63 | GO:0042060 | 0.0163095618805423 | wound healing | biological_process | The series of events that restore integrity to a damaged tissue, following an injury. [GOC:bf, PMID:15269788]
63 | GO:0042178 | 0.0163095618805423 | xenobiotic catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:jl]
63 | GO:0070919 | 0.0163095618805423 | production of siRNA involved in chromatin silencing by small RNA | biological_process | Cleavage of double-stranded RNA to form small interfering RNA molecules (siRNAs) of 21-23 nucleotides, in the context of chromatin silencing by small RNA. [GOC:mah, PMID:19239886]
63 | GO:0070922 | 0.0163095618805423 | small RNA loading onto RISC | biological_process | The process in which a single-stranded small RNA associates with the RNA-initiated silencing complex (RISC); occurs as part of a process of gene silencing by small RNA. [GOC:mah, PMID:19239886]
63 | GO:0071280 | 0.0163095618805423 | cellular response to copper ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus. [GOC:mah]
63 | GO:1902047 | 0.0163095618805423 | polyamine transmembrane transport | biological_process | The directed movement of a polyamine macromolecule across a membrane. [GOC:TermGenie, GOC:vw]
63 | GO:0046519 | 0.0182757106525788 | [NAME] process | biological_process | The chemical reactions and pathways involving sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds. [ISBN:[PHONE]]
63 | GO:0046520 | 0.0182757106525788 | sphingoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sphingoids, any of a class of compounds comprising sphinganine and its homologues and stereoisomers, and derivatives of these compounds. [ISBN:[PHONE]]
63 | GO:0071215 | 0.024146497967532 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
63 | GO:0030148 | 0.0272397788030361 | sphingolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [GOC:mah, ISBN:[PHONE]]
63 | GO:0006527 | 0.032355687690337 | arginine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [[NAME], GOC:go_curators]
63 | GO:0006537 | 0.032355687690337 | glutamate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators]
63 | GO:0006562 | 0.032355687690337 | proline catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
63 | GO:0006805 | 0.032355687690337 | xenobiotic metabolic process | biological_process | The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:cab2]
63 | GO:0007009 | 0.032355687690337 | plasma membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the plasma membrane. [GOC:dph, GOC:jl, GOC:mah]
63 | GO:0009268 | 0.032355687690337 | response to pH | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. [GOC:jl]
63 | GO:0032456 | 0.032355687690337 | endocytic recycling | biological_process | The directed movement of membrane-bounded vesicles from recycling endosomes back to the plasma membrane where they are recycled for further rounds of transport. [GOC:ecd, PMID:16473635]
63 | GO:0046740 | 0.032355687690337 | spread of virus in host, cell to cell | biological_process | The process of viral dissemination within an infected host organism where infectious virion particles are passed from infected to uninfected host cells. [ISBN:[PHONE]]
63 | GO:0071457 | 0.032355687690337 | cellular response to ozone | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus. [GOC:mah]
63 | GO:0071466 | 0.032355687690337 | cellular response to xenobiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms. [GOC:mah]
63 | GO:0071493 | 0.032355687690337 | cellular response to UV-B | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm. [GOC:mah]
63 | GO:0010583 | 0.0324569093438038 | response to cyclopentenone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. [PMID:18334669]
63 | GO:0042138 | 0.0413538898033124 | meiotic DNA double-strand break formation | biological_process | The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I. This results in the initiation of meiotic recombination. [GOC:elh, GOC:jl, PMID:11529427]
63 | GO:0097306 | 0.0417481489443467 | cellular response to alcohol | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
63 | GO:0009410 | 0.0452305841306615 | response to xenobiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms. [GOC:jl]
63 | [NAME] | 0.0471069397412479 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
63 | GO:0010231 | 0.048142591058201 | maintenance of seed dormancy | biological_process | Any process that maintains a seed in a dormant state. [ISBN:[PHONE], PMID:9580097]
63 | GO:0010262 | 0.048142591058201 | somatic embryogenesis | biological_process | Initiation of a somatic embryo-an embryo arising from previously differentiated somatic cells, rather than from fused haploid gametes. [GOC:sm, PMID:9611173]
63 | GO:0071324 | 0.048142591058201 | cellular response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:mah]
63 | GO:0071329 | 0.048142591058201 | cellular response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:mah]
63 | GO:0097437 | 0.048142591058201 | maintenance of dormancy | biological_process | The dormancy process that results in an organism remaining in dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
63 | [NAME] | 0.0492358070772143 | transcription from RNA polymerase II promoter | biological_process | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger [NAME] (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:[PHONE]]
63 | [NAME] | 0.0495004955549614 | posttranscriptional gene silencing by RNA | biological_process | Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation. [GOC:mah, PMID:15020054, PMID:15066275, PMID:15066283]
64 | GO:0000956 | 3.13142648872213e-06 | nuclear-transcribed mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. [GOC:krc]
64 | GO:0071472 | 0.00484733586581955 | cellular response to salt stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:mah]
64 | GO:1901700 | 0.00714915615961719 | response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
64 | GO:0009593 | 0.00765396611615709 | detection of chemical stimulus | biological_process | The series of events in which a chemical stimulus is received by a cell and converted into a molecular signal. [GOC:jl]
64 | [NAME] | 0.00904554965879715 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
64 | GO:0070647 | 0.0105629248919319 | protein modification by small protein conjugation or removal | biological_process | A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein. [GOC:mah]
64 | GO:0071248 | 0.0110296730033288 | cellular response to metal ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. [GOC:mah]
64 | GO:0000740 | 0.0135913015670342 | nuclear membrane fusion | biological_process | The joining of 2 or more lipid bilayer membranes that surround the nucleus. [GOC:elh]
64 | GO:0003032 | 0.0135913015670342 | detection of oxygen | biological_process | The series of events in which an oxygen stimulus is received by a cell and converted into a molecular signal. [GOC:mtg_cardio]
64 | GO:0006458 | 0.0135913015670342 | 'de novo' protein folding | biological_process | The process of assisting in the folding of a nascent peptide chain into its correct tertiary structure. [GOC:mb]
64 | GO:0006556 | 0.0135913015670342 | S-adenosylmethionine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. [GOC:go_curators, ISBN:[PHONE]]
64 | GO:0006884 | 0.0135913015670342 | cell volume homeostasis | biological_process | Any process involved in maintaining the steady state of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell. [GOC:dph, GOC:go_curators, GOC:tb]
64 | GO:0009594 | 0.0135913015670342 | detection of nutrient | biological_process | The series of events in which a nutrient stimulus is received by a cell and converted into a molecular signal. [GOC:jl]
64 | GO:0010198 | 0.0135913015670342 | synergid death | biological_process | Synergid cells undergo degeneration and death in response to penetration by the pollen tube. It is an active process that involves a dramatic decrease in cell volume, collapse of the vacuoles, and complete disintegration of the plasma membrane and most organelles. [GOC:isa_complete, GOC:sm, PMID:12215516]
64 | GO:0031053 | 0.0135913015670342 | primary miRNA processing | biological_process | Any process involved in the conversion of a primary microRNA transcript into a pre-microRNA molecule. [GOC:sl, PMID:15211354]
64 | GO:0035278 | 0.0135913015670342 | negative regulation of translation involved in gene silencing by miRNA | biological_process | The process in which microRNAs (miRNAs) block the translation of target mRNAs into proteins. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically repress translation if the miRNA imperfectly base-pairs with the 3' untranslated regions of target mRNAs. [PMID:14744438, PMID:15196554]
64 | GO:0040033 | 0.0135913015670342 | negative regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that stops, prevents or reduces the rate that mRNAs are effectively translated into protein. [GOC:dph, GOC:ems, GOC:tb]
64 | GO:0042550 | 0.0135913015670342 | photosystem I stabilization | biological_process | The stabilization of the photosystem I protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. [GOC:go_curators]
64 | GO:0045974 | 0.0135913015670342 | regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that modulates the frequency, rate or extent that mRNAs are effectively translated into protein. [GOC:dph, GOC:go_curators, GOC:tb]
64 | GO:0046500 | 0.0135913015670342 | S-adenosylmethionine metabolic process | biological_process | The chemical reactions and pathways involving S-adenosylmethionine, S-(5'-adenosyl)-L-methionine, an important intermediate in one-carbon metabolism. [GOC:go_curators, ISBN:[PHONE]]
64 | GO:0051084 | 0.0135913015670342 | 'de novo' posttranslational protein folding | biological_process | The process of assisting in the correct noncovalent folding of newly formed polypeptides or folding intermediates of polypeptides that have exited the ribosome and/or have been stabilized and transferred by other chaperone proteins. This process could involve several cycles of ATP hydrolysis. [GOC:rb]
64 | GO:0051085 | 0.0135913015670342 | chaperone mediated protein folding requiring cofactor | biological_process | The process of assisting in the correct posttranslational noncovalent assembly of proteins, which is dependent on additional protein cofactors. This process occurs over one or several cycles of nucleotide hydrolysis-dependent binding and release. [GOC:rb]
64 | GO:0070483 | 0.0135913015670342 | detection of hypoxia | biological_process | The series of events in which a stimulus indicating lowered oxygen tension is received by a cell and converted into a molecular signal. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:BHF, GOC:mah]
64 | GO:0071280 | 0.0135913015670342 | cellular response to copper ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus. [GOC:mah]
64 | GO:0090174 | 0.0135913015670342 | [NAME] fusion | biological_process | The joining of two lipid bilayers to form a single organelle membrane. [GOC:ascb_2009, GOC:dph, GOC:tb]
64 | GO:1900490 | 0.0135913015670342 | positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]
64 | GO:2001215 | 0.0135913015670342 | regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that modulates the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:al]
64 | GO:0009991 | 0.0148346223963938 | response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:go_curators]
64 | GO:0071241 | 0.0149424080586722 | cellular response to inorganic substance | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. [GOC:mah]
64 | GO:0006486 | 0.0194348123305027 | protein glycosylation | biological_process | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr]
64 | GO:0009101 | 0.0194348123305027 | glycoprotein biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. [GOC:go_curators, ISBN:[PHONE]]
64 | GO:0043413 | 0.0194348123305027 | macromolecule glycosylation | biological_process | The covalent attachment of a glycosyl residue to one or more monomeric units in a polypeptide, polynucleotide, polysaccharide, or other biological macromolecule. [GOC:jl]
64 | GO:0070085 | 0.0211733436840678 | glycosylation | biological_process | The covalent attachment of a glycosyl residue to a substrate molecule. [GOC:mah]
64 | GO:0009163 | 0.0217514736998452 | nucleoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any one of a family of organic molecules consisting of a purine or pyrimidine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:jl, ISBN:[PHONE]]
64 | GO:0042451 | 0.0217514736998452 | purine nucleoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any purine nucleoside, one of a family of organic molecules consisting of a purine base covalently bonded to a sugar ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:go_curators]
64 | GO:0042455 | 0.0217514736998452 | ribonucleoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any ribonucleoside, a nucleoside in which purine or pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. [CHEBI:18254, GOC:jl]
64 | GO:0046129 | 0.0217514736998452 | purine ribonucleoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any purine ribonucleoside, a nucleoside in which purine base is linked to a ribose (beta-D-ribofuranose) molecule. [GOC:ai]
64 | GO:0009100 | 0.0220773620147134 | [NAME] process | biological_process | The chemical reactions and pathways involving glycoproteins, any protein that contains covalently bound glycose (i.e. monosaccharide) residues; the glycose occurs most commonly as oligosaccharide or fairly small polysaccharide but occasionally as monosaccharide. [GOC:go_curators, ISBN:[PHONE]]
64 | GO:0006623 | 0.0228153738486053 | protein targeting to vacuole | biological_process | The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators]
64 | GO:0072665 | 0.0228153738486053 | protein localization to vacuole | biological_process | A process in which a protein is transported to, or maintained at, a location in a vacuole. [GOC:ecd]
64 | GO:0072666 | 0.0228153738486053 | establishment of protein localization to vacuole | biological_process | The directed movement of a protein to a specific location in a vacuole. [GOC:mah]
64 | GO:0009605 | 0.0228534061780476 | response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:hb]
64 | GO:1901701 | 0.0229358641696274 | cellular response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
64 | GO:0007034 | 0.0241727966880755 | vacuolar transport | biological_process | The directed movement of substances into, out of or within a vacuole. [GOC:ai]
64 | GO:0010039 | 0.0242571288659493 | response to iron ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm]
64 | GO:0010623 | 0.0270000236792087 | developmental programmed cell death | biological_process | The activation of endogenous cellular processes that result in the death of a cell as part of its development. [GOC:dph, GOC:tb]
64 | GO:0042753 | 0.0270000236792087 | positive regulation of circadian rhythm | biological_process | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
64 | GO:0051341 | 0.0270000236792087 | regulation of oxidoreductase activity | biological_process | Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [EC:1.-.-.-, GOC:ai]
64 | GO:0051353 | 0.0270000236792087 | positive regulation of oxidoreductase activity | biological_process | Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. [GOC:ai]
64 | GO:0071457 | 0.0270000236792087 | cellular response to ozone | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus. [GOC:mah]
64 | GO:0071493 | 0.0270000236792087 | cellular response to UV-B | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm. [GOC:mah]
64 | GO:0009911 | 0.0296012456634798 | positive regulation of flower development | biological_process | Any process that activates or increases the frequency, rate or extent of flower development. [GOC:go_curators]
64 | GO:0006979 | 0.0347237108539356 | response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731]
64 | GO:0031667 | 0.0372355232694325 | response to nutrient levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. [GOC:mah]
64 | GO:0042752 | 0.0383989904154181 | regulation of circadian rhythm | biological_process | Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:dph, GOC:jl, GOC:tb]
64 | GO:2000243 | 0.0383989904154181 | positive regulation of reproductive process | biological_process | Any process that activates or increases the frequency, rate or extent of reproductive process. [GOC:mah]
64 | GO:0007584 | 0.0402285902160494 | response to nutrient | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus. [GOC:go_curators]
64 | GO:0009938 | 0.0402285902160494 | negative regulation of gibberellic acid mediated signaling pathway | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of gibberellic acid mediated signaling activity. [GOC:sm]
64 | GO:0010031 | 0.0402285902160494 | circumnutation | biological_process | The organismal movement by which the tip of a plant organ follows a spiral pattern as a consequence of growth. [GOC:mtg_MIT_16mar07, ISBN:[PHONE]]
64 | GO:0010345 | 0.0402285902160494 | suberin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262]
64 | GO:0050879 | 0.0402285902160494 | multicellular organismal movement | biological_process | Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism. [GOC:dph, GOC:mtg_muscle, GOC:tb]
64 | GO:0061077 | 0.0402285902160494 | chaperone-mediated protein folding | biological_process | The process of inhibiting aggregation and assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure that is dependent on interaction with a chaperone. [GOC:dph, GOC:vw]
64 | GO:0071324 | 0.0402285902160494 | cellular response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:mah]
64 | GO:0071329 | 0.0402285902160494 | cellular response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:mah]
64 | GO:0009739 | 0.041919421645911 | response to gibberellin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:jl]
64 | GO:0070887 | 0.0423824031775629 | cellular response to chemical stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. [GOC:mah]
64 | GO:0043086 | 0.0480576016814952 | negative regulation of catalytic activity | biological_process | Any process that stops or reduces the activity of an enzyme. [GOC:jl, GOC:tb]
64 | GO:0031668 | 0.0495004955547702 | cellular response to extracellular stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an extracellular stimulus. [GOC:mah]
65 | GO:0009658 | 1.22275042018876e-05 | chloroplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid]
65 | GO:0019252 | 0.000323614938049884 | starch biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai]
65 | GO:0015996 | 0.00040859259006873 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
65 | GO:0019288 | 0.000660208127373792 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
65 | GO:0000023 | 0.00104738419802125 | [NAME] process | biological_process | The chemical reactions and pathways involving the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose), an intermediate in the catabolism of glycogen and starch. [GOC:jl, ISBN:[PHONE]]
65 | GO:0006399 | 0.00164812843815562 | tRNA metabolic process | biological_process | The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established. [ISBN:[PHONE]]
65 | GO:0031425 | 0.00179955456197969 | chloroplast RNA processing | biological_process | The conversion of a primary RNA molecule transcribed from a chloroplast genome into one or more mature RNA molecules. [GOC:mah]
65 | GO:0016120 | 0.00331080376388615 | carotene biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenes, hydrocarbon carotenoids. [GOC:go_curators]
65 | GO:0006655 | 0.0048232133032027 | phosphatidylglycerol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. [ISBN:[PHONE]]
65 | GO:0031325 | 0.00518201877392057 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
65 | [NAME] | 0.00524444764297656 | postreplication repair | biological_process | The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication. [GOC:elh]
65 | GO:0010027 | 0.00524894336137497 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
65 | GO:0042254 | 0.00893751810961122 | ribosome biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma]
65 | GO:0000354 | 0.0111928365846212 | cis assembly of pre-catalytic spliceosome | biological_process | Assembly of a spliceosomal complex containing the intact pre-mRNA and all of the spliceosomal snRNPs. This occurs when the tri-snRNP associates with the pre-mRNA and associated snRNPs in an ATP-dependent manner. [GOC:krc, GOC:mtg_mpo, ISBN:[PHONE]]
65 | GO:0006642 | 0.0111928365846212 | triglyceride mobilization | biological_process | The release of triglycerides, any triester of glycerol, from storage within cells or tissues, making them available for metabolism. [GOC:mah, PMID:11943743, PMID:15713625]
65 | GO:0010322 | 0.0111928365846212 | regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of isopentenyl diphosphate produced via the methylerythritol (MEP) pathway (mevalonate-independent). [PMID:16531478]
65 | GO:0010323 | 0.0111928365846212 | negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of isopentenyl diphosphate produced via the methylerythritol (MEP) pathway (mevalonate-independent). [PMID:16531478]
65 | GO:0010677 | 0.0111928365846212 | negative regulation of cellular carbohydrate metabolic process | biological_process | Any process that decreases the rate, extent or frequency of the chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. [GOC:dph, GOC:tb]
65 | GO:0015768 | 0.0111928365846212 | maltose transport | biological_process | The directed movement of maltose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Maltose is the disaccharide 4-O-alpha-D-glucopyranosyl-D-glucopyranose, an intermediate in the catabolism of glycogen and starch. [GOC:ai]
65 | GO:0034052 | 0.0111928365846212 | positive regulation of plant-type hypersensitive response | biological_process | Any process that activates or increases the frequency, rate or extent of the hypersensitive response in a plant. [GOC:pamgo_curators]
65 | GO:0043487 | 0.0111928365846212 | regulation of RNA stability | biological_process | Any process that modulates the propensity of RNA molecules to degradation. Includes processes that both stabilize and destabilize RNAs. [GOC:jl]
65 | GO:0043489 | 0.0111928365846212 | RNA stabilization | biological_process | Prevention of degradation of RNA molecules. [GOC:go_curators]
65 | GO:0045292 | 0.0111928365846212 | mRNA cis splicing, via spliceosome | biological_process | The joining together, after removal of an intervening sequence composed of one or more introns, of two segments of the same RNA molecule via spliceosomal catalysis to produce an mRNA composed only of exon sequences that all came from the same primary transcript. [GOC:krc, http://calspace.ucsd.edu/origins/Glossary/C.htm, ISBN:[PHONE]]
65 | GO:0046166 | 0.0111928365846212 | glyceraldehyde-3-phosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glyceraldehyde-3-phosphate, an important intermediate in glycolysis. [GOC:ai]
65 | GO:0046184 | 0.0111928365846212 | aldehyde biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aldehydes, any organic compound with the formula R-CH=O. [GOC:ai]
65 | GO:0071071 | 0.0111928365846212 | regulation of phospholipid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids. [GOC:mah]
65 | GO:0071072 | 0.0111928365846212 | negative regulation of phospholipid biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of phospholipids. [GOC:mah]
65 | GO:1900407 | 0.0111928365846212 | regulation of cellular response to oxidative stress | biological_process | Any process that modulates the frequency, rate or extent of cellular response to oxidative stress. [GOC:mah, GOC:TermGenie]
65 | GO:1901031 | 0.0111928365846212 | regulation of response to reactive oxygen species | biological_process | Any process that modulates the frequency, rate or extent of response to reactive oxygen species. [GOC:kmv, GOC:TermGenie]
65 | GO:2000121 | 0.0111928365846212 | regulation of removal of superoxide radicals | biological_process | Any process that modulates the frequency, rate or extent of removal of superoxide radicals. [GOC:obol]
65 | GO:0031328 | 0.0113331650492589 | positive regulation of cellular biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
65 | GO:0009891 | 0.0115996697716886 | positive regulation of biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
65 | GO:0002376 | 0.0119947745493786 | immune system process | biological_process | Any process involved in the development or functioning of the immune system, an organismal system for calibrated responses to potential internal or invasive threats. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
65 | GO:0045036 | 0.0120367051331516 | protein targeting to chloroplast | biological_process | The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:[PHONE]]
65 | GO:0072596 | 0.0120367051331516 | establishment of protein localization to chloroplast | biological_process | The directed movement of a protein to a specific location in a chloroplast. [GOC:mah]
65 | GO:0072598 | 0.0120367051331516 | protein localization to chloroplast | biological_process | A process in which a protein is transported to, or maintained at, a location in a chloroplast. [GOC:ecd]
65 | GO:0044275 | 0.013392619494472 | cellular carbohydrate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. [GOC:jl]
65 | GO:0000375 | 0.0144578277734482 | RNA splicing, via transesterification reactions | biological_process | Splicing of RNA via a series of two transesterification reactions. [GOC:krc]
65 | GO:0000377 | 0.0144578277734482 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process | Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure. [GOC:krc, PMID:11377794]
65 | GO:0006396 | 0.0145847592881168 | RNA processing | biological_process | Any process involved in the conversion of one or more primary [NAME] transcripts into one or more mature RNA molecules. [GOC:mah]
65 | GO:0009073 | 0.0162144108301758 | aromatic amino acid family biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
65 | GO:0042793 | 0.0162144108301758 | transcription from plastid promoter | biological_process | The synthesis of RNA from a plastid DNA template, usually by a specific plastid [NAME] polymerase. [GOC:jl, ISBN:[PHONE]]
65 | GO:0045087 | 0.0174815991600591 | innate immune response | biological_process | Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
65 | GO:0043085 | 0.0178734719434325 | positive regulation of catalytic activity | biological_process | Any process that activates or increases the activity of an enzyme. [GOC:jl, GOC:tb]
65 | GO:0016036 | 0.0180859949349823 | cellular response to phosphate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]
65 | GO:0044093 | 0.0185408362125573 | positive regulation of molecular function | biological_process | Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. [GO:jl]
65 | GO:0006955 | 0.0187968497856364 | immune response | biological_process | Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
65 | GO:0044724 | 0.019067436556834 | single-organism carbohydrate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of carbohydrates, occurring within a single organism. [GOC:jl]
65 | GO:0006364 | 0.019248219597277 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
65 | GO:0016072 | 0.0197916913668115 | rRNA metabolic process | biological_process | The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes. [ISBN:[PHONE]]
65 | GO:0009072 | 0.0221098822243254 | aromatic amino acid family metabolic process | biological_process | The chemical reactions and pathways involving aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
65 | [NAME] | 0.0221763328177209 | cellular biogenic amine metabolic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells involving any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
65 | GO:0000245 | 0.0222621635379183 | spliceosomal complex assembly | biological_process | The aggregation, arrangement and bonding together of a spliceosomal complex, a ribonucleoprotein apparatus that catalyzes nuclear mRNA splicing via transesterification reactions. [PMID:9476892]
65 | GO:0006527 | 0.0222621635379183 | arginine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid. [[NAME], GOC:go_curators]
65 | GO:0015866 | 0.0222621635379183 | ADP transport | biological_process | The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
65 | GO:0019499 | 0.0222621635379183 | cyanide metabolic process | biological_process | The chemical reactions and pathways involving cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration, reacting with the ferric form of cytochrome aa3 and thus blocking the electron transport chain. [ISBN:[PHONE]]
65 | GO:0045833 | 0.0222621635379183 | negative regulation of lipid metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving lipids. [GOC:go_curators]
65 | GO:0045912 | 0.0222621635379183 | negative regulation of carbohydrate metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving carbohydrate. [GOC:go_curators]
65 | GO:0051055 | 0.0222621635379183 | negative regulation of lipid biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of lipids. [GOC:ai]
65 | GO:0051409 | 0.0222621635379183 | response to nitrosative stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrosative stress stimulus. Nitrosative stress is a state often resulting from exposure to high levels of nitric oxide (NO) or the highly reactive oxidant peroxynitrite, which is produced following interaction of NO with superoxide anions. [PMID:15925705]
65 | GO:0051410 | 0.0222621635379183 | detoxification of nitrogen compound | biological_process | Any process that reduces or removes the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances. [GOC:ai]
65 | GO:0006098 | 0.0228707394494258 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
65 | GO:0006740 | 0.0228707394494258 | NADPH regeneration | biological_process | A metabolic process that generates a pool of NADPH by the reduction of NADP+. [GOC:mah]
65 | GO:0006739 | 0.0244401243257391 | NADP metabolic process | biological_process | The chemical reactions and pathways involving nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; metabolism may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
65 | GO:0046496 | 0.0252487909626536 | [NAME] process | biological_process | The chemical reactions and pathways involving nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [ISBN:[PHONE]]
65 | GO:0010604 | 0.0259743435785363 | positive regulation of macromolecule metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
65 | GO:0019362 | 0.0260735269462152 | [NAME] process | biological_process | The chemical reactions and pathways involving a pyridine nucleotide, a nucleotide characterized by a pyridine derivative as a nitrogen base. [GOC:jl]
65 | GO:0016052 | 0.0264201523642454 | carbohydrate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. [ISBN:[PHONE]]
65 | GO:0034470 | 0.0264463168273026 | ncRNA processing | biological_process | Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. [GOC:mah]
65 | GO:0072524 | 0.0277714447346065 | pyridine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. [CHEBI:26421, GOC:mah]
65 | GO:0032270 | 0.0290849326580093 | positive regulation of cellular protein metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. [GOC:mah]
65 | GO:0044106 | 0.029182405343485 | cellular amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl]
65 | GO:0000373 | 0.0332093242148936 | Group II intron splicing | biological_process | The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat. [GOC:krc, PMID:11377794]
65 | GO:0005977 | 0.0332093242148936 | glycogen metabolic process | biological_process | The chemical reactions and pathways involving glycogen, a polydisperse, highly branched glucan composed of chains of D-glucose residues in alpha-(1->4) glycosidic linkage, joined together by alpha-(1->6) glycosidic linkages. [ISBN:[PHONE]]
65 | GO:0006112 | 0.0332093242148936 | energy reserve metabolic process | biological_process | The chemical reactions and pathways by which a cell derives energy from stored compounds such as fats or glycogen. [GOC:mah]
65 | GO:0016553 | 0.0332093242148936 | base conversion or substitution editing | biological_process | Any base modification or substitution events that result in alterations in the coding potential or structural properties of RNAs as a result of changes in the base-pairing properties of the modified ribonucleoside(s). [PMID:11092837]
65 | GO:0019405 | 0.0332093242148936 | alditol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
65 | GO:0019563 | 0.0332093242148936 | glycerol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:go_curators, ISBN:[PHONE]]
65 | GO:0019747 | 0.0332093242148936 | regulation of isoprenoid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving isoprenoids. [GOC:go_curators]
65 | GO:0042549 | 0.0332093242148936 | photosystem II stabilization | biological_process | The stabilization of the photosystem II protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. [GOC:go_curators]
65 | GO:0080024 | 0.0332093242148936 | [NAME] process | biological_process | The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants. [PMID:18725356]
65 | GO:0090322 | 0.0332093242148936 | regulation of superoxide metabolic process | biological_process | Any process that modulates the rate, frequency, or extent of superoxide metabolism, the chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. [GOC:tb]
65 | GO:2000037 | 0.0332093242148936 | regulation of stomatal complex patterning | biological_process | Any process that modulates the frequency, rate or extent of stomatal complex patterning. [GOC:obol]
65 | GO:0006568 | 0.0337627071854729 | tryptophan metabolic process | biological_process | The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid. [ISBN:[PHONE]]
65 | GO:0006586 | 0.0337627071854729 | indolalkylamine metabolic process | biological_process | The chemical reactions and pathways involving indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
65 | GO:0032880 | 0.0337627071854729 | regulation of protein localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location. [GOC:dph, GOC:mah, GOC:tb]
65 | GO:0051247 | 0.0337627071854729 | positive regulation of protein metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein. [GOC:ai]
65 | GO:0016109 | 0.0344311531694694 | tetraterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tetraterpenoid compounds, terpenoids with eight isoprene units. [GOC:go_curators]
65 | GO:0016117 | 0.0344311531694694 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
65 | GO:0016108 | 0.0372273172308124 | tetraterpenoid metabolic process | biological_process | The chemical reactions and pathways involving tetraterpenoid compounds, terpenoids with eight isoprene units. [ISBN:[PHONE]]
65 | GO:0016116 | 0.0372273172308124 | [NAME] process | biological_process | The chemical reactions and pathways involving carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [ISBN:[PHONE]]
65 | GO:0090305 | 0.0372273172308124 | nucleic acid phosphodiester bond hydrolysis | biological_process | The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis. [GOC:dph, GOC:tb]
65 | GO:0006952 | 0.0383314114358811 | defense response | biological_process | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]
65 | GO:0009902 | 0.0386680020977688 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
65 | GO:0051644 | 0.0386680020977688 | [NAME] | biological_process | Any process in which a plastid is transported to, and/or maintained in, a specific location within the cell. [GOC:ai]
65 | GO:0051667 | 0.0386680020977688 | establishment of plastid localization | biological_process | The directed movement of a plastid to a specific location in the cell. [GOC:ai]
65 | GO:0034219 | 0.0387124992138696 | carbohydrate transmembrane transport | biological_process | The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
65 | GO:0051656 | 0.040136934282538 | establishment of organelle localization | biological_process | The directed movement of an organelle to a specific location. [GOC:ai]
65 | GO:1901606 | 0.040136934282538 | alpha-amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of an alpha-amino acid. [GOC:TermGenie]
65 | GO:0006007 | 0.0429745174726596 | glucose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucose, the aldohexose gluco-hexose. [GOC:ai]
65 | GO:0009063 | 0.0431590278677466 | cellular amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents. [GOC:ai]
65 | GO:0010363 | 0.0437181948003767 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
65 | GO:0019320 | 0.0437416328536439 | hexose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
65 | GO:0046365 | 0.0437416328536439 | monosaccharide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of monosaccharides, polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. [ISBN:[PHONE]]
65 | GO:0010021 | 0.0440356475721957 | amylopectin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amylopectin, the (1->4) linked alpha glucose units with alpha-(1->6) linkages. [ISBN:[PHONE]]
65 | GO:0015860 | 0.0440356475721957 | purine nucleoside transmembrane transport | biological_process | The directed movement of a purine nucleoside across a membrane. A purine nucleoside is a purine base covalently bonded to a ribose or deoxyribose sugar. [GOC:ai, GOC:vw]
65 | GO:0015867 | 0.0440356475721957 | ATP transport | biological_process | The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
65 | GO:0042593 | 0.0440356475721957 | glucose homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of glucose within an organism or cell. [GOC:go_curators]
65 | GO:0043068 | 0.0440356475721957 | positive regulation of programmed cell death | biological_process | Any process that activates or increases the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
65 | GO:1901642 | 0.0440356475721957 | nucleoside transmembrane transport | biological_process | The directed movement of nucleoside across a membrane. [GOC:pr, GOC:TermGenie]
65 | GO:2000896 | 0.0440356475721957 | amylopectin metabolic process | biological_process | The chemical reactions and pathways involving an amylopectin. [GOC:mengo_curators]
65 | GO:0080135 | 0.0460097943018899 | regulation of cellular response to stress | biological_process | Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
65 | GO:0015995 | 0.0495361146444455 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
65 | GO:0006950 | 0.0496309451117053 | response to stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
66 | GO:0006661 | 0.0031844292141141 | phosphatidylinositol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:[PHONE]]
66 | GO:0007638 | 0.0131116085705675 | mechanosensory behavior | biological_process | Behavior that is dependent upon the sensation of a mechanical stimulus. [GOC:go_curators]
66 | GO:0009854 | 0.0131116085705675 | oxidative photosynthetic carbon pathway | biological_process | The reactions of the C2 pathway bring about the metabolic conversion of two molecules of 2-phosphoglycolate to one molecule of 3-phosphoglycerate, which can be used by the C3 cycle, and one molecule of carbon dioxide (CO2). [ISBN:[PHONE]]
66 | GO:0010273 | 0.0131116085705675 | detoxification of copper ion | biological_process | Any process that reduces or removes the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion. [PMID:16367966]
66 | [NAME] | 0.0131116085705675 | L-alanine transport | biological_process | The directed movement of L-alanine, the L-enantiomer of 2-aminopropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, GOC:jsg, GOC:mah]
66 | GO:0019354 | 0.0131116085705675 | siroheme biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. [ISBN:[PHONE]]
66 | GO:0030397 | 0.0131116085705675 | membrane disassembly | biological_process | The controlled breakdown of any cell membrane in the context of a normal process such as autophagy. [GOC:mah]
66 | GO:0032025 | 0.0131116085705675 | response to cobalt ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cobalt ion stimulus. [GOC:mah]
66 | GO:0032328 | 0.0131116085705675 | alanine transport | biological_process | The directed movement of alanine, 2-aminopropanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
66 | GO:0033591 | 0.0131116085705675 | response to L-ascorbic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-ascorbic acid (vitamin C) stimulus. [GOC:sl]
66 | GO:0044708 | 0.0131116085705675 | single-organism behavior | biological_process | The specific actions or reactions of a single organism in response to external or internal stimuli. [GOC:jl]
66 | GO:0046156 | 0.0131116085705675 | siroheme metabolic process | biological_process | The chemical reactions and pathways involving siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. [ISBN:[PHONE]]
66 | GO:0007623 | 0.0165029105654117 | circadian rhythm | biological_process | Any biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:bf, GOC:go_curators]
66 | GO:0048511 | 0.0165029105654117 | rhythmic process | biological_process | Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism. [GOC:jid]
66 | GO:0034440 | 0.0249300889462632 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
66 | GO:0007178 | 0.0260533722195105 | [NAME] receptor protein serine/threonine kinase signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling]
66 | GO:0007610 | 0.0260533722195105 | behavior | biological_process | The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions. [GOC:ems, ISBN:[PHONE]]
66 | GO:0010088 | 0.0260533722195105 | phloem development | biological_process | The formation of the principal food-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
66 | GO:0015812 | 0.0260533722195105 | gamma-aminobutyric acid transport | biological_process | The directed movement of gamma-aminobutyric acid (GABA, 4-aminobutyrate), an amino acid which acts as a neurotransmitter in some organisms, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE]]
66 | GO:0033273 | 0.0260533722195105 | response to vitamin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a vitamin stimulus. [GOC:sl]
66 | GO:0010043 | 0.0303527721896542 | response to zinc ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. [GOC:sm]
66 | GO:0042631 | 0.035958432837098 | cellular response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of water. [GOC:go_curators]
66 | GO:0042752 | 0.035958432837098 | regulation of circadian rhythm | biological_process | Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:dph, GOC:jl, GOC:tb]
66 | GO:0071462 | 0.035958432837098 | cellular response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:mah]
66 | GO:0030258 | 0.0379557890408319 | lipid modification | biological_process | The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid. [GOC:mah]
66 | GO:0006206 | 0.0388274642666643 | [NAME] process | biological_process | The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
66 | GO:0006208 | 0.0388274642666643 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
66 | GO:0006212 | 0.0388274642666643 | uracil catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. [GOC:go_curators]
66 | GO:0006378 | 0.0388274642666643 | mRNA polyadenylation | biological_process | The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript. [ISBN:[PHONE]]
66 | GO:0007584 | 0.0388274642666643 | response to nutrient | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nutrient stimulus. [GOC:go_curators]
66 | GO:0015791 | 0.0388274642666643 | polyol transport | biological_process | The directed movement of polyols, any polyhydric alcohol, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
66 | GO:0015798 | 0.0388274642666643 | myo-inositol transport | biological_process | The directed movement of myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms. [GOC:ai]
66 | GO:0015813 | 0.0388274642666643 | L-glutamate transport | biological_process | The directed movement of L-glutamate, the L enantiomer anion of 2-aminopentanedioic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, GOC:dph, GOC:tb]
66 | GO:0019464 | 0.0388274642666643 | glycine decarboxylation via glycine cleavage system | biological_process | The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. [MetaCyc:GLYCLEAV-PWY]
66 | GO:0019860 | 0.0388274642666643 | uracil metabolic process | biological_process | The chemical reactions and pathways involving uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. [GOC:go_curators]
66 | GO:0051156 | 0.0388274642666643 | glucose 6-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
66 | GO:0072529 | 0.0388274642666643 | pyrimidine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. [[NAME], GOC:mah]
66 | [NAME] | 0.0388274642666643 | [NAME] development | biological_process | The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state. [PMID:19675148]
67 | GO:0045454 | 0.00303697379061023 | cell redox homeostasis | biological_process | Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]
67 | GO:0009414 | 0.00642449445714698 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
67 | GO:0006044 | 0.0107131435881763 | N-acetylglucosamine metabolic process | biological_process | The chemical reactions and pathways involving N-acetylglucosamine. The D isomer is a common structural unit of glycoproteins in plants, bacteria and animals; it is often the terminal sugar of an oligosaccharide group of a glycoprotein. [ISBN:[PHONE]]
67 | GO:0007019 | 0.0107131435881763 | microtubule depolymerization | biological_process | The removal of tubulin heterodimers from one or both ends of a microtubule. [ISBN:[PHONE]]
67 | GO:0031063 | 0.0107131435881763 | regulation of histone deacetylation | biological_process | Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones. [GOC:mah]
67 | GO:0031114 | 0.0107131435881763 | regulation of microtubule depolymerization | biological_process | Any process that modulates the frequency, rate or extent of microtubule depolymerization. [GOC:mah]
67 | GO:0031117 | 0.0107131435881763 | positive regulation of microtubule depolymerization | biological_process | Any process that activates or increases the frequency, rate or extent of microtubule depolymerization. [GOC:mah]
67 | GO:0035264 | 0.0107131435881763 | multicellular organism growth | biological_process | The increase in size or mass of an entire multicellular organism, as opposed to cell growth. [GOC:bf, GOC:curators, GOC:dph, GOC:tb]
67 | GO:0040014 | 0.0107131435881763 | regulation of multicellular organism growth | biological_process | Any process that modulates the frequency, rate or extent of growth of the body of an organism so that it reaches its usual body size. [GOC:dph, GOC:ems, GOC:tb]
67 | GO:0043243 | 0.0107131435881763 | positive regulation of protein complex disassembly | biological_process | Any process that activates or increases the frequency, rate or extent of protein complex disassembly, the disaggregation of a protein complex into its constituent components. [GOC:jl]
67 | GO:0090311 | 0.0107131435881763 | regulation of protein deacetylation | biological_process | Any process that modulates the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. [GOC:tb]
67 | GO:1901881 | 0.0107131435881763 | positive regulation of protein depolymerization | biological_process | Any process that activates or increases the frequency, rate or extent of protein depolymerization. [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:12032137]
67 | GO:0009269 | 0.0123161348117297 | response to desiccation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. [GOC:jl]
67 | GO:0009819 | 0.0213132106566965 | drought recovery | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of prolonged deprivation of water that restores that organism to a normal (non-stressed) condition. [GOC:lr]
67 | GO:0034051 | 0.0213132106566965 | negative regulation of plant-type hypersensitive response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the hypersensitive response in a plant. [GOC:pamgo_curators]
67 | GO:0006972 | 0.0280740369617923 | hyperosmotic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. [GOC:jl, PMID:12142009]
67 | GO:0002683 | 0.0318013768253515 | negative regulation of immune system process | biological_process | Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune system process. [GOC:add]
67 | GO:0009584 | 0.0318013768253515 | detection of visible light | biological_process | The series of events in which a visible light stimulus is received by a cell and converted into a molecular signal. A visible light stimulus is electromagnetic radiation that can be perceived visually by an organism; for organisms lacking a visual system, this can be defined as light with a wavelength within the range 380 to 780 nm. [GOC:go_curators, ISBN:[PHONE]]
67 | GO:0010231 | 0.0318013768253515 | maintenance of seed dormancy | biological_process | Any process that maintains a seed in a dormant state. [ISBN:[PHONE], PMID:9580097]
67 | GO:0031110 | 0.0318013768253515 | regulation of microtubule polymerization or depolymerization | biological_process | Any process that modulates the frequency, rate or extent of microtubule polymerization or depolymerization by the addition or removal of tubulin heterodimers from a microtubule. [GOC:mah]
67 | GO:0031112 | 0.0318013768253515 | positive regulation of microtubule polymerization or depolymerization | biological_process | Any process that activates or increases the frequency, rate or extent of microtubule polymerization or depolymerization. [GOC:mah]
67 | GO:0032886 | 0.0318013768253515 | regulation of microtubule-based process | biological_process | Any process that modulates the frequency, rate or extent of any cellular process that depends upon or alters the microtubule cytoskeleton. [GOC:mah]
67 | GO:0045824 | 0.0318013768253515 | negative regulation of innate immune response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the innate immune response. [GOC:go_curators]
67 | GO:0048768 | 0.0318013768253515 | [NAME] cell tip growth | biological_process | Localized growth of a plant root hair tip by extension of the cell wall. [GOC:jid, GOC:ki, PMID:12468740]
67 | GO:0050777 | 0.0318013768253515 | negative regulation of immune response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. [GOC:ai]
67 | GO:0070507 | 0.0318013768253515 | regulation of microtubule cytoskeleton organization | biological_process | Any process that modulates the frequency, rate or extent of the formation, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising microtubules and their associated proteins. [GOC:mah]
67 | GO:0097437 | 0.0318013768253515 | maintenance of dormancy | biological_process | The dormancy process that results in an organism remaining in dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
67 | [NAME] | 0.0318013768253515 | glucosamine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving glucosamine-containing compounds (glucosamines). [GOC:TermGenie]
67 | GO:2000022 | 0.0318013768253515 | regulation of jasmonic acid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of jasmonic acid mediated signaling pathway. [GOC:obol]
67 | GO:0009853 | 0.0359360889165237 | photorespiration | biological_process | A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:[PHONE]]
67 | GO:0009611 | 0.0391531246545616 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
67 | [NAME] | 0.0421788056774842 | regulation of salicylic acid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of salicylic acid mediated signaling pathway. [GOC:obol]
67 | GO:0043094 | 0.0429595776152395 | cellular metabolic compound salvage | biological_process | Any process which produces a useful metabolic compound from derivatives of it without de novo synthesis, as carried out by individual cells. [GOC:mlg]
67 | GO:0009737 | 0.0441206680567572 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
68 | GO:0046786 | 0.00104601368499784 | viral replication complex formation and maintenance | biological_process | The process of organizing and assembling viral replication proteins in preparation for viral replication. [ISBN:[PHONE]]
68 | GO:0009396 | 0.00503892991904182 | folic acid-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of folic acid and its derivatives. [GOC:ai]
68 | GO:0009785 | 0.00917625336150899 | blue light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of blue light by photoreceptor molecule, at a wavelength between 400nm and 470nm. [GOC:lr, GOC:sm]
68 | GO:0006914 | 0.016741300793527 | autophagy | biological_process | The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. [ISBN:[PHONE], PMID:11099404, PMID:9412464]
68 | GO:0006012 | 0.0173708283805748 | galactose metabolic process | biological_process | The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. [ISBN:[PHONE]]
68 | GO:0046834 | 0.0173708283805748 | lipid phosphorylation | biological_process | The process of introducing one or more phosphate groups into a lipid, any member of a group of substances soluble in lipid solvents but only sparingly soluble in aqueous solvents. [GOC:bf, ISBN:[PHONE]]
68 | GO:0006127 | 0.018867924528432 | glycerophosphate shuttle | biological_process | The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise glycerol 3-phosphate in the cytosol; this compound is then transported into the mitochondria where it is converted to dihydroxyacetone phosphate (DHAP) using FAD; DHAP then returns to the cytosol to complete the cycle. [GOC:jl, GOC:mtg_electron_transport, ISBN:071672009]
68 | GO:0006580 | 0.018867924528432 | [NAME] process | biological_process | The chemical reactions and pathways involving ethanolamine (2-aminoethanol), an important water-soluble base of phospholipid (phosphatidylethanolamine). [CHEBI:16000, GOC:jl, ISBN:01928006X]
68 | GO:0006761 | 0.018867924528432 | dihydrofolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of dihydrofolate, the dihydroxylated derivative of folate. [GOC:ai]
68 | GO:0006915 | 0.018867924528432 | apoptotic process | biological_process | A programmed cell death process which begins when a cell receives an internal (e.g. DNA damage) or external signal (e.g. an extracellular death ligand), and proceeds through a series of biochemical events (signaling pathways) which typically lead to rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. The process ends when the cell has died. The process is divided into a signaling pathway phase, and an execution phase, which is triggered by the former. [GOC:dhl, GOC:ecd, GOC:go_curators, GOC:mtg_apoptosis, GOC:tb, ISBN:[PHONE], PMID:18846107, PMID:21494263]
68 | GO:0006921 | 0.018867924528432 | cellular component disassembly involved in execution phase of apoptosis | biological_process | The breakdown of structures such as organelles, proteins, or other macromolecular structures during apoptosis. [GOC:dph, GOC:mah, GOC:mtg_apoptosis, GOC:tb]
68 | GO:0006998 | 0.018867924528432 | nuclear envelope organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear envelope. [GOC:dph, GOC:ems, GOC:jl, GOC:mah]
68 | GO:0007202 | 0.018867924528432 | activation of phospholipase C activity | biological_process | The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand. [GOC:dph, GOC:mah, GOC:tb, PMID:8280098]
68 | GO:0010378 | 0.018867924528432 | temperature compensation of the circadian clock | biological_process | The process in which the circadian clock maintains robust and accurate timing over a broad range of physiological temperatures. The circadian clock is an endogenous 24-h timer found in most eukaryotes and in photosynthetic bacteria. The clock drives rhythms in the physiology, biochemistry, and metabolism of the organisms. [PMID:16617099]
68 | GO:0010517 | 0.018867924528432 | regulation of phospholipase activity | biological_process | Any process that modulates the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid. [GOC:BHF, GOC:dph, GOC:tb]
68 | GO:0010518 | 0.018867924528432 | positive regulation of phospholipase activity | biological_process | Any process that increases the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid. [GOC:BHF, GOC:dph, GOC:tb]
68 | GO:0010863 | 0.018867924528432 | positive regulation of phospholipase C activity | biological_process | Any process that increases the rate of phospholipase C activity. [GOC:dph, GOC:tb]
68 | GO:0010919 | 0.018867924528432 | regulation of inositol phosphate biosynthetic process | biological_process | Any process that modulates the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. [GOC:BHF, GOC:dph, GOC:tb]
68 | GO:0030262 | 0.018867924528432 | apoptotic nuclear changes | biological_process | Alterations undergone by nuclei at the molecular and morphological level and that contribute to the execution phase of apoptosis. [GOC:mah, GOC:mtg_apoptosis]
68 | GO:0030264 | 0.018867924528432 | nuclear fragmentation involved in apoptotic nuclear change | biological_process | The breakdown of the nucleus into small membrane-bounded compartments, or blebs, each of which contain compacted DNA. [GOC:dph, GOC:mah, GOC:mtg_apoptosis, GOC:tb, ISBN:[PHONE]]
68 | GO:0032527 | 0.018867924528432 | protein exit from endoplasmic reticulum | biological_process | The directed movement of proteins from the endoplasmic reticulum. [GOC:rb]
68 | GO:0032959 | 0.018867924528432 | inositol trisphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of inositol trisphosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached. [CHEBI:24848, CHEBI:25450, GOC:mah]
68 | GO:0032960 | 0.018867924528432 | regulation of inositol trisphosphate biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate. [GOC:mah]
68 | GO:0033477 | 0.018867924528432 | S-methylmethionine metabolic process | biological_process | The chemical reactions and pathways involving S-methyl-methionine (SMM). SMM can be converted to methionine by donating a methyl group to homocysteine, and concurrent operation of this reaction and that mediated by MMT sets up the SMM cycle. [GOC:mah, PMID:12692340]
68 | [NAME] | 0.018867924528432 | S-methylmethionine cycle | biological_process | A cyclic series of interconversions involving S-methyl-L-methionine, S-adenosyl-L-homocysteine, S-adenosyl-L-methionine, L-homocysteine, and L-methionine. Converts the methionine group of adenosylmethionine back to free methionine, and may serve regulate the cellular adenosylmethionine level. [GOC:mah, MetaCyc:PWY-5441]
68 | GO:0046369 | 0.018867924528432 | galactose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactose, the aldohexose galacto-hexose. [ISBN:[PHONE]]
68 | GO:0046452 | 0.018867924528432 | dihydrofolate metabolic process | biological_process | The chemical reactions and pathways involving dihydrofolate, the dihydroxylated derivative of folate. [ISBN:[PHONE]]
68 | GO:0046654 | 0.018867924528432 | tetrahydrofolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. [ISBN:[PHONE]]
68 | GO:0048578 | 0.018867924528432 | positive regulation of long-day photoperiodism, flowering | biological_process | Any process that activates, maintains or increases long-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
68 | GO:0060191 | 0.018867924528432 | regulation of lipase activity | biological_process | Any process that modulates the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid. [GOC:dph, GOC:tb]
68 | GO:0060193 | 0.018867924528432 | positive regulation of lipase activity | biological_process | Any process that increases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid. [GOC:BHF, GOC:dph, GOC:tb]
68 | GO:0060964 | 0.018867924528432 | regulation of gene silencing by miRNA | biological_process | Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [GOC:dph, GOC:tb]
68 | GO:0060966 | 0.018867924528432 | regulation of gene silencing by RNA | biological_process | Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:tb]
68 | GO:0071763 | 0.018867924528432 | nuclear membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nuclear inner or outer membrane. [GOC:mah]
68 | GO:0097194 | 0.018867924528432 | execution phase of apoptosis | biological_process | A stage of the apoptotic process that starts with the controlled breakdown of the cell through the action of effector caspases or other effector molecules (e.g. cathepsins, calpains etc.). Key steps of the execution phase are rounding-up of the cell, retraction of pseudopodes, reduction of cellular volume (pyknosis), chromatin condensation, nuclear fragmentation (karyorrhexis), plasma membrane blebbing and fragmentation of the cell into apoptotic bodies. The execution phase ends when the cell has died. [GOC:mtg_apoptosis]
68 | GO:1900274 | 0.018867924528432 | regulation of phospholipase C activity | biological_process | Any process that modulates the frequency, rate or extent of phospholipase C activity. [GOC:BHF, GOC:TermGenie]
68 | GO:1900490 | 0.018867924528432 | positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]
68 | GO:1901160 | 0.018867924528432 | primary amino compound metabolic process | biological_process | The chemical reactions and pathways involving primary amino compound. [GOC:TermGenie]
68 | GO:2001215 | 0.018867924528432 | regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that modulates the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:al]
68 | GO:0032940 | 0.0205905543394872 | secretion by cell | biological_process | The controlled release of a substance by a cell. [GOC:mah]
68 | GO:0046903 | 0.0205905543394872 | secretion | biological_process | The controlled release of a substance by a cell or a tissue. [GOC:ai]
68 | GO:0009734 | 0.0218181917132254 | auxin mediated signaling pathway | biological_process | The series of molecular signals generated in response to detection of auxin. [GOC:mah, GOC:sm]
68 | GO:0009308 | 0.027084955692415 | amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
68 | GO:0006066 | 0.0275856577035479 | alcohol metabolic process | biological_process | The chemical reactions and pathways involving alcohols, any of a class of compounds containing one or more hydroxyl groups attached to a saturated carbon atom. [CHEBI:30879, ISBN:[PHONE]]
68 | GO:0009738 | 0.028241522084199 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
68 | GO:0009414 | 0.0284362619613042 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
68 | GO:0009415 | 0.0293045639083329 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
68 | GO:0071365 | 0.0297532256801551 | cellular response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:mah]
68 | GO:0042542 | 0.0313424732144679 | response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [GOC:jl]
68 | GO:0006887 | 0.0373828109677712 | exocytosis | biological_process | A process of secretion by a cell that results in the release of intracellular molecules (e.g. hormones, matrix proteins) contained within a membrane-bounded vesicle by fusion of the vesicle with the plasma membrane of a cell. This is the process in which most molecules are secreted from eukaryotic cells. [GOC:mah, ISBN:[PHONE]]
68 | GO:0006904 | 0.0373828109677712 | vesicle docking involved in exocytosis | biological_process | The initial attachment of a vesicle membrane to a target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane, that contributes to exocytosis. [GOC:jid]
68 | GO:0008153 | 0.0373828109677712 | para-aminobenzoic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of para-aminobenzoic acid, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins. [ISBN:[PHONE], PMID:11377864, [NAME]
68 | GO:0009051 | 0.0373828109677712 | pentose-phosphate shunt, oxidative branch | biological_process | The branch of the pentose-phosphate shunt which involves the oxidation of glucose 6-P and produces ribulose 5-P, reduced NADP+ and carbon dioxide (CO2). [ISBN:[PHONE], MetaCyc:OXIDATIVEPENT-PWY]
68 | GO:0010244 | 0.0373828109677712 | response to low fluence blue light stimulus by blue low-fluence system | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of the detection of a low fluence blue light stimulus by the blue low-fluence system. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. The blue low-fluence system responds to blue light at or below 0.1 micromols/m2. In certain species excitation of the blue low fluence system induces the transcription of a number of nuclear and plastid coded genes. [GOC:mtg_far_red, PMID:10398709]
68 | GO:0015908 | 0.0373828109677712 | fatty acid transport | biological_process | The directed movement of fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [GOC:ai]
68 | GO:0019058 | 0.0373828109677712 | viral infectious cycle | biological_process | A set of processes which all viruses follow to ensure survival; includes attachment and entry of the virus particle, decoding of genome information, translation of viral mRNA by host ribosomes, genome replication, and assembly and release of viral particles containing the genome. [ISBN:[PHONE]]
68 | GO:0019079 | 0.0373828109677712 | viral genome replication | biological_process | Any process involved directly in viral genome replication, including viral nucleotide metabolism. [ISBN:[PHONE]]
68 | GO:0019287 | 0.0373828109677712 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. [GOC:go_curators, MetaCyc:PWY-922]
68 | GO:0022406 | 0.0373828109677712 | membrane docking | biological_process | The initial attachment of a membrane or protein to a target membrane. Docking requires only that the proteins come close enough to interact and adhere. [GOC:isa_complete]
68 | GO:0046653 | 0.0373828109677712 | tetrahydrofolate metabolic process | biological_process | The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. [ISBN:[PHONE]]
68 | GO:0048278 | 0.0373828109677712 | vesicle docking | biological_process | The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere. [GOC:ai, GOC:jid]
68 | GO:0051341 | 0.0373828109677712 | regulation of oxidoreductase activity | biological_process | Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [EC:1.-.-.-, GOC:ai]
68 | GO:0051353 | 0.0373828109677712 | positive regulation of oxidoreductase activity | biological_process | Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. [GOC:ai]
68 | [NAME] | 0.0373828109677712 | regulation of posttranscriptional gene silencing | biological_process | Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
68 | GO:0006722 | 0.0399131707393731 | triterpenoid metabolic process | biological_process | The chemical reactions and pathways involving triterpenoid compounds, terpenoids with six isoprene units. [ISBN:[PHONE]]
68 | GO:0016104 | 0.0399131707393731 | triterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of triterpenoid compounds, terpenoids with six isoprene units. [GOC:go_curators]
68 | GO:0019742 | 0.0399131707393731 | pentacyclic triterpenoid metabolic process | biological_process | The chemical reactions and pathways involving pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings. [ISBN:[PHONE]]
68 | GO:0019745 | 0.0399131707393731 | pentacyclic triterpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pentacyclic triterpenoid compounds, terpenoids with six isoprene units and 5 carbon rings. [ISBN:[PHONE]]
68 | GO:0000302 | 0.0411531020829456 | response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:krc]
68 | GO:0071215 | 0.0415437495756996 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
68 | GO:0009698 | 0.042597319820456 | phenylpropanoid metabolic process | biological_process | The chemical reactions and pathways involving aromatic derivatives of trans-cinnamic acid. [GOC:jl]
68 | GO:0046482 | 0.0443592248129517 | para-aminobenzoic acid metabolic process | biological_process | The chemical reactions and pathways involving para-aminobenzoic acid, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins. [ISBN:[PHONE], PMID:11377864, [NAME]
68 | GO:0009699 | 0.0495588493561723 | phenylpropanoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid. [GOC:jl]
68 | GO:0010413 | 0.0495588493561723 | glucuronoxylan metabolic process | biological_process | The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units. [GOC:tair_curators]
69 | GO:0009939 | 0.00351330531167573 | positive regulation of gibberellic acid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity. [GOC:sm]
69 | GO:0006661 | 0.00742833682654073 | phosphatidylinositol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylinositol, any glycophospholipid in which the sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:[PHONE]]
69 | GO:0072594 | 0.00755948820277696 | establishment of protein localization to organelle | biological_process | The directed movement of a protein to a specific location on or in an organelle. Encompasses establishment of localization in the membrane or lumen of a membrane-bounded organelle. [GOC:mah]
69 | GO:0032957 | 0.011182418490326 | inositol trisphosphate metabolic process | biological_process | The chemical reactions and pathways involving myo-inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached. [CHEBI:24540, CHEBI:24848, GOC:mah]
69 | GO:0016558 | 0.0207164429096964 | protein import into peroxisome matrix | biological_process | The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:[PHONE], PMID:11687502, PMID:11988772]
69 | GO:0006635 | 0.0217572133251754 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
69 | GO:0019395 | 0.0217572133251754 | fatty acid oxidation | biological_process | The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [ISBN:[PHONE], MetaCyc:FAO-PWY]
69 | GO:0043255 | 0.022429110897312 | regulation of carbohydrate biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of carbohydrates. [GOC:jl]
69 | GO:0006625 | 0.0225490412293198 | protein targeting to peroxisome | biological_process | The process of directing proteins towards the peroxisome, usually using signals contained within the protein. [GOC:ai]
69 | GO:0072662 | 0.0225490412293198 | protein localization to peroxisome | biological_process | A process in which a protein is transported to, or maintained at, a location in a peroxisome. [GOC:ecd]
69 | GO:0072663 | 0.0225490412293198 | establishment of protein localization to peroxisome | biological_process | The directed movement of a protein to a specific location in a peroxisome. [GOC:mah]
69 | GO:0043574 | 0.0244836988945515 | peroxisomal transport | biological_process | Transport of substances into, out of or within a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:jl]
69 | GO:0006839 | 0.0245084768011105 | mitochondrial transport | biological_process | Transport of substances into, out of or within a mitochondrion. [GOC:ai]
69 | GO:0044242 | 0.0261086754007018 | cellular lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells. [GOC:jl]
69 | GO:0016042 | 0.0274719309020869 | lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators]
69 | GO:0034440 | 0.0275233557507249 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
69 | GO:0045454 | 0.0292296184574722 | cell redox homeostasis | biological_process | Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]
69 | GO:0009911 | 0.0303790496748522 | positive regulation of flower development | biological_process | Any process that activates or increases the frequency, rate or extent of flower development. [GOC:go_curators]
69 | GO:0006505 | 0.0346977934122381 | GPI anchor metabolic process | biological_process | The chemical reactions and pathways involving glycosylphosphatidylinositol anchors, molecular mechanisms for attaching membrane proteins to the lipid bilayer of cell membranes. Structurally they consist of a molecule of phosphatidylinositol to which is linked, via the C-6 hydroxyl of the inositol, a carbohydrate chain. This chain is in turn linked to the protein through an ethanolamine phosphate group, the amino group of which is in amide linkage with the C-terminal carboxyl of the protein chain, the phosphate group being esterified to the C-6 hydroxyl of the terminal mannose of the core carbohydrate chain. [ISBN:[PHONE]]
69 | GO:0006506 | 0.0346977934122381 | GPI anchor biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a glycosylphosphatidylinositol (GPI) anchor that attaches some membrane proteins to the lipid bilayer of the cell membrane. The phosphatidylinositol group is linked via the C-6 hydroxyl residue of inositol to a carbohydrate chain which is itself linked to the protein via an ethanolamine phosphate group, its amino group forming an amide linkage with the C-terminal carboxyl of the protein. Some GPI anchors have variants on this canonical linkage. [GOC:go_curators, ISBN:[PHONE]]
69 | GO:0006513 | 0.0346977934122381 | protein monoubiquitination | biological_process | Addition of a single ubiquitin group to a protein. [GOC:ai]
69 | GO:0007202 | 0.0346977934122381 | activation of phospholipase C activity | biological_process | The initiation of the activity of the inactive enzyme phospolipase C as the result of a series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand. [GOC:dph, GOC:mah, GOC:tb, PMID:8280098]
69 | GO:0007638 | 0.0346977934122381 | mechanosensory behavior | biological_process | Behavior that is dependent upon the sensation of a mechanical stimulus. [GOC:go_curators]
69 | GO:0009395 | 0.0346977934122381 | phospholipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
69 | GO:0009647 | 0.0346977934122381 | skotomorphogenesis | biological_process | The control of plant growth, development, and differentiation in response to growth in darkness. [[NAME], PMID:15012288]
69 | GO:0009660 | 0.0346977934122381 | amyloplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an amyloplast. An amyloplast is a plastid whose main function is to synthesize and store starch. [GOC:jid]
69 | GO:0010265 | 0.0346977934122381 | SCF complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex. [GOC:pz]
69 | GO:0010517 | 0.0346977934122381 | regulation of phospholipase activity | biological_process | Any process that modulates the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid. [GOC:BHF, GOC:dph, GOC:tb]
69 | GO:0010518 | 0.0346977934122381 | positive regulation of phospholipase activity | biological_process | Any process that increases the frequency, rate or extent of phospholipase activity, the hydrolysis of a phospholipid. [GOC:BHF, GOC:dph, GOC:tb]
69 | GO:0010863 | 0.0346977934122381 | positive regulation of phospholipase C activity | biological_process | Any process that increases the rate of phospholipase C activity. [GOC:dph, GOC:tb]
69 | GO:0010919 | 0.0346977934122381 | regulation of inositol phosphate biosynthetic process | biological_process | Any process that modulates the rate, frequency or extent of inositol phosphate biosynthesis. Inositol phosphate biosynthetic processes are the chemical reactions and pathways resulting in the formation of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. [GOC:BHF, GOC:dph, GOC:tb]
69 | GO:0016574 | 0.0346977934122381 | histone ubiquitination | biological_process | The modification of histones by addition of ubiquitin groups. [GOC:ai]
69 | GO:0019354 | 0.0346977934122381 | siroheme biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. [ISBN:[PHONE]]
69 | GO:0032959 | 0.0346977934122381 | inositol trisphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of inositol trisphosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached. [CHEBI:24848, CHEBI:25450, GOC:mah]
69 | GO:0032960 | 0.0346977934122381 | regulation of inositol trisphosphate biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of inositol trisphosphate. [GOC:mah]
69 | GO:0033523 | 0.0346977934122381 | histone H2B ubiquitination | biological_process | The modification of histone H2B by addition of ubiquitin groups. [GOC:mah]
69 | GO:0043462 | 0.0346977934122381 | regulation of ATPase activity | biological_process | Any process that modulates the rate of ATP hydrolysis by an ATPase. [GOC:jl]
69 | GO:0044708 | 0.0346977934122381 | single-organism behavior | biological_process | The specific actions or reactions of a single organism in response to external or internal stimuli. [GOC:jl]
69 | GO:0046156 | 0.0346977934122381 | siroheme metabolic process | biological_process | The chemical reactions and pathways involving siroheme, a tetrahydroporphyrin with adjacent, reduced pyrrole rings. [ISBN:[PHONE]]
69 | GO:0060191 | 0.0346977934122381 | regulation of lipase activity | biological_process | Any process that modulates the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid. [GOC:dph, GOC:tb]
69 | GO:0060193 | 0.0346977934122381 | positive regulation of lipase activity | biological_process | Any process that increases the frequency, rate or extent of lipase activity, the hydrolysis of a lipid or phospholipid. [GOC:BHF, GOC:dph, GOC:tb]
69 | GO:1900274 | 0.0346977934122381 | regulation of phospholipase C activity | biological_process | Any process that modulates the frequency, rate or extent of phospholipase C activity. [GOC:BHF, GOC:TermGenie]
69 | GO:0006457 | 0.0347606740240546 | protein folding | biological_process | The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure. [GOC:go_curators, GOC:rb]
69 | GO:0006511 | 0.0347606740240546 | ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of a ubiquitin group, or multiple ubiquitin groups, to the protein. [GOC:go_curators]
69 | GO:0019941 | 0.0362657897557498 | modification-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent modification of the target protein. [GOC:go_curators]
69 | GO:0043632 | 0.0362657897557498 | modification-dependent macromolecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a macromolecule, initiated by covalent modification of the target molecule. [GOC:jl]
69 | GO:0007005 | 0.0383211318424745 | mitochondrion organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
69 | GO:2000243 | 0.043758709037416 | positive regulation of reproductive process | biological_process | Any process that activates or increases the frequency, rate or extent of reproductive process. [GOC:mah]
69 | GO:0006109 | 0.0448859832345621 | regulation of carbohydrate metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates. [GOC:go_curators]
69 | [NAME] | 0.0448859832345621 | postreplication repair | biological_process | The conversion of DNA-damage induced single-stranded gaps into large molecular weight DNA after replication. Includes pathways that remove replication-blocking lesions in conjunction with DNA replication. [GOC:elh]
69 | GO:0009062 | 0.0462589666600684 | fatty acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:go_curators]
69 | GO:0016192 | 0.0477029382905099 | vesicle-mediated transport | biological_process | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000]
69 | GO:0009408 | 0.0480660650690967 | response to heat | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr]
69 | GO:0072329 | 0.0484922791391016 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
70 | GO:0006623 | 6.01963827363298e-05 | protein targeting to vacuole | biological_process | The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators]
70 | GO:0051604 | 0.000312241104061813 | protein maturation | biological_process | Any process leading to the attainment of the full functional capacity of a protein. [GOC:ai]
70 | GO:0043484 | 0.00161743917124748 | regulation of RNA splicing | biological_process | Any process that modulates the frequency, rate or extent of RNA splicing, the process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:jl]
70 | GO:0006400 | 0.00200577774151564 | tRNA modification | biological_process | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. [GOC:curators]
70 | GO:0001510 | 0.00325812183716488 | RNA methylation | biological_process | Posttranscriptional addition of a methyl group to either a nucleotide or 2'-O ribose in a polyribonucleotide. Usually uses S-adenosylmethionine as a cofactor. [GOC:hjd]
70 | GO:0006486 | 0.00325812183716488 | protein glycosylation | biological_process | A protein modification process that results in the addition of a carbohydrate or carbohydrate derivative unit to a protein amino acid, e.g. the addition of glycan chains to proteins. [GOC:curators, GOC:pr]
70 | [NAME] | 0.00428960177563947 | gravitropism | biological_process | The orientation of plant parts under the stimulation of gravity. [ISBN:[PHONE]]
70 | GO:0006635 | 0.00501168620242309 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
70 | GO:0051248 | 0.00547973225244151 | negative regulation of protein metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving a protein. [GOC:ai]
70 | GO:0006913 | 0.00688152807429523 | nucleocytoplasmic transport | biological_process | The directed movement of molecules between the nucleus and the cytoplasm. [GOC:go_curators]
70 | GO:0006499 | 0.00824075702377604 | N-terminal protein myristoylation | biological_process | The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. [GOC:mah]
70 | GO:0010072 | 0.00896163123633239 | primary shoot apical meristem specification | biological_process | The specification of the meristem which will give rise to all post-embryonic above-ground structures of the plant as well as the non-root below-ground structures, such as rhizomes and tubers. [GOC:ascb_2009, GOC:dph, GOC:tair_curators, GOC:tb]
70 | GO:0016558 | 0.00976005450501948 | protein import into peroxisome matrix | biological_process | The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:[PHONE], PMID:11687502, PMID:11988772]
70 | GO:0000956 | 0.011961857147579 | nuclear-transcribed mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. [GOC:krc]
70 | [NAME] | 0.011961857147579 | mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of mRNA, [NAME], which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. [ISBN:[PHONE]]
70 | GO:0042752 | 0.0124494516712876 | regulation of circadian rhythm | biological_process | Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:dph, GOC:jl, GOC:tb]
70 | GO:0071417 | 0.0149190901094995 | cellular response to organic nitrogen | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. An organic nitrogen compound is formally a compound containing at least one carbon-nitrogen bond. [GOC:mah]
70 | GO:0007033 | 0.0191299445763353 | vacuole organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vacuole. [GOC:mah]
70 | GO:0006401 | 0.0206254682882926 | RNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. [ISBN:[PHONE]]
70 | GO:0034655 | 0.0211203484544663 | nucleobase-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:mah]
70 | GO:0017148 | 0.0217880136300941 | negative regulation of translation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA. [GOC:isa_complete]
70 | GO:0032269 | 0.0246116471639813 | negative regulation of cellular protein metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. [GOC:mah]
70 | GO:0008284 | 0.0276727535498455 | positive regulation of cell proliferation | biological_process | Any process that activates or increases the rate or extent of cell proliferation. [GOC:go_curators]
70 | GO:0006338 | 0.028924221841528 | chromatin remodeling | biological_process | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. [GOC:jid, PMID:12697820]
70 | GO:0006974 | 0.0296202155047049 | response to DNA damage stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators]
70 | GO:0007062 | 0.0307831721445178 | sister chromatid cohesion | biological_process | The cell cycle process in which the sister chromatids of a replicated chromosome are associated with each other. [GOC:jh, GOC:mah, ISBN:[PHONE]]
70 | GO:0019439 | 0.0338789191686727 | aromatic compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai]
70 | GO:0000375 | 0.0364334627853011 | RNA splicing, via transesterification reactions | biological_process | Splicing of RNA via a series of two transesterification reactions. [GOC:krc]
70 | GO:0000377 | 0.0364334627853011 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process | Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure. [GOC:krc, PMID:11377794]
70 | GO:0016071 | 0.0380260854009144 | mRNA metabolic process | biological_process | The chemical reactions and pathways involving mRNA, [NAME], which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. [ISBN:[PHONE]]
70 | GO:0006417 | 0.0381662522927858 | regulation of translation | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA. [GOC:isa_complete]
70 | GO:0046700 | 0.0390954421965659 | heterocycle catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). [GOC:ai]
70 | GO:0008380 | 0.039807056106306 | RNA splicing | biological_process | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. [GOC:krc, GOC:mah]
70 | GO:0044270 | 0.0402059162481274 | cellular nitrogen compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of organic and inorganic nitrogenous compounds. [GOC:jl, ISBN:[PHONE]]
70 | GO:0000380 | 0.0402942117045865 | alternative mRNA splicing, via spliceosome | biological_process | The process of generating multiple mRNA molecules from a given set of exons by differential use of exons from the primary transcript(s) to form multiple mature mRNAs that vary in their exon composition. [GOC:krc, PMID:12110900]
70 | GO:0000381 | 0.0402942117045865 | regulation of alternative mRNA splicing, via spliceosome | biological_process | Any process that modulates the frequency, rate or extent of alternative splicing of nuclear mRNAs. [GOC:krc]
70 | GO:0002100 | 0.0402942117045865 | tRNA wobble adenosine to inosine editing | biological_process | The process in which an adenosine in position 34 of a tRNA is post-transcriptionally converted to inosine. [GOC:hjd, ISBN:155581073X]
70 | GO:0006177 | 0.0402942117045865 | GMP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate. [ISBN:[PHONE]]
70 | GO:0006434 | 0.0402942117045865 | [NAME] aminoacylation | biological_process | The process of coupling serine to seryl-tRNA, catalyzed by [NAME] synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
70 | GO:0006741 | 0.0402942117045865 | NADP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
70 | GO:0007032 | 0.0402942117045865 | endosome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of endosomes. [GOC:dph, GOC:jl, GOC:mah]
70 | GO:0009663 | 0.0402942117045865 | plasmodesma organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plasmodesma, a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [GOC:mah]
70 | GO:0010265 | 0.0402942117045865 | SCF complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the SKP1-Cullin/Cdc53-F-box protein ubiquitin ligase (SCF) complex. [GOC:pz]
70 | GO:0016598 | 0.0402942117045865 | protein arginylation | biological_process | The conjugation of arginine to the N-terminal aspartate or glutamate of a protein; required for the degradation of the protein via the ubiquitin pathway. [PMID:17896865]
70 | GO:0030974 | 0.0402942117045865 | thiamine pyrophosphate transport | biological_process | The directed movement of thiamine pyrophosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mlg]
70 | GO:0031053 | 0.0402942117045865 | primary miRNA processing | biological_process | Any process involved in the conversion of a primary microRNA transcript into a pre-microRNA molecule. [GOC:sl, PMID:15211354]
70 | GO:0033233 | 0.0402942117045865 | regulation of protein sumoylation | biological_process | Any process that modulates the frequency, rate or extent of the addition of SUMO groups to a protein. [GOC:mah]
70 | GO:0033234 | 0.0402942117045865 | negative regulation of protein sumoylation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the addition of SUMO groups to a protein. [GOC:mah]
70 | GO:0035278 | 0.0402942117045865 | negative regulation of translation involved in gene silencing by miRNA | biological_process | The process in which microRNAs (miRNAs) block the translation of target mRNAs into proteins. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically repress translation if the miRNA imperfectly base-pairs with the 3' untranslated regions of target mRNAs. [PMID:14744438, PMID:15196554]
70 | GO:0040033 | 0.0402942117045865 | negative regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that stops, prevents or reduces the rate that mRNAs are effectively translated into protein. [GOC:dph, GOC:ems, GOC:tb]
70 | GO:0042177 | 0.0402942117045865 | negative regulation of protein catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:go_curators, GOC:jl, PMID:10207076]
70 | GO:0043153 | 0.0402942117045865 | entrainment of circadian clock by photoperiod | biological_process | The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night). [GOC:jl]
70 | GO:0045003 | 0.0402942117045865 | double-strand break repair via synthesis-dependent strand annealing | biological_process | SDSA is a major mechanism of double-strand break repair in mitosis which allows for the error-free repair of a double-strand break without the exchange of adjacent sequences. The broken DNA searches for and base pairs with a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template. Newly synthesized DNA is then displaced from the template and anneal with its complement on the other side of the double-strand break. [PMID:10357855]
70 | GO:0045974 | 0.0402942117045865 | regulation of translation, ncRNA-mediated | biological_process | Any process, mediated by small non-coding RNAs, that modulates the frequency, rate or extent that mRNAs are effectively translated into protein. [GOC:dph, GOC:go_curators, GOC:tb]
70 | GO:0046037 | 0.0402942117045865 | GMP metabolic process | biological_process | The chemical reactions and pathways involving GMP, guanosine monophosphate. [GOC:go_curators]
70 | GO:0048024 | 0.0402942117045865 | regulation of mRNA splicing, via spliceosome | biological_process | Any process that modulates the frequency, rate or extent of mRNA splicing via a spliceosomal mechanism. [GOC:jid]
70 | GO:0048865 | 0.0402942117045865 | stem cell fate commitment | biological_process | The process in which the developmental fate of a cell becomes restricted such that it will develop into a stem cell. [CL:0000034, GOC:isa_complete]
70 | GO:0048867 | 0.0402942117045865 | stem cell fate determination | biological_process | The process in which a cell becomes capable of differentiating autonomously into a stem cell regardless of its environment; upon determination, the cell fate cannot be reversed. [CL:0000034, GOC:isa_complete]
70 | GO:0080179 | 0.0402942117045865 | 1-methylguanosine metabolic process | biological_process | The chemical reactions and pathways involving 1-methylguanosine. [GOC:tb]
70 | GO:0097056 | 0.0402942117045865 | selenocysteinyl-tRNA(Sec) biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of selenocysteinyl-tRNA(Sec). This process occurs through the following steps: a unique serine-tRNA with a UGA recognizing anticodon is first aminoacylated with serine; this is then phosphorylated by phosphoseryl-tRNA[Ser]Sec kinase; lastly, selenium is swapped for the phosphate on the serine. [CHEBI:13166, GOC:yaf, PMID:15317934, UniPathway:UPA00906]
70 | GO:1901070 | 0.0402942117045865 | guanosine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of guanosine-containing compounds (guanosines). [GOC:TermGenie]
70 | GO:1901361 | 0.0413393372224226 | organic cyclic compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of organic cyclic compound. [GOC:TermGenie]
70 | GO:0006281 | 0.043911596448866 | DNA repair | biological_process | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]
70 | GO:0009880 | 0.0443979723742957 | [NAME] specification | biological_process | The process that results in the patterns of cell differentiation that will arise in an embryo. [GOC:go_curators, ISBN:[PHONE]]
71 | GO:0008284 | 0.000582542953490971 | positive regulation of cell proliferation | biological_process | Any process that activates or increases the rate or extent of cell proliferation. [GOC:go_curators]
71 | GO:0010388 | 0.00219456554070731 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
71 | GO:0010413 | 0.00285234207190476 | glucuronoxylan metabolic process | biological_process | The chemical reactions and pathways involving xylan, a polymer containing a beta-(1->4)-linked D-xylose backbone decorated with glucuronic acid side units. [GOC:tair_curators]
71 | GO:0045492 | 0.00309858740306708 | [NAME] biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of xylan, a polymer containing a beta-1,4-linked D-xylose backbone. [GOC:go_curators, PMID:11931668]
71 | GO:0010152 | 0.00366780115884573 | [NAME] | biological_process | The final stages of microgametogenesis after the trinucleate stage has been reached resulting in viable pollen grains. [PMID:11595796]
71 | GO:0006913 | 0.00576901353390305 | nucleocytoplasmic transport | biological_process | The directed movement of molecules between the nucleus and the cytoplasm. [GOC:go_curators]
71 | [NAME] | 0.00904554965879715 | meiotic chromosome segregation | biological_process | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle. [GOC:ai, GOC:mah]
71 | GO:0042991 | 0.0110296730033288 | transcription factor import into nucleus | biological_process | The directed movement of a transcription factor from the cytoplasm to the nucleus. [GOC:jl]
71 | GO:0006606 | 0.0120877242508927 | protein import into nucleus | biological_process | The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl]
71 | GO:0044744 | 0.0120877242508927 | protein targeting to nucleus | biological_process | The process of directing proteins towards the nucleus, usually using signals contained within the protein. [GOC:jl]
71 | GO:0034504 | 0.0127247498865095 | protein localization to nucleus | biological_process | A process in which a protein is transported to, or maintained in, a location within the nucleus. [GOC:ecd]
71 | GO:0051170 | 0.0127247498865095 | nuclear import | biological_process | The directed movement of substances into the nucleus. [GOC:ai]
71 | GO:0006473 | 0.0129208644750282 | protein acetylation | biological_process | The addition of an acetyl group to a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. [GOC:ai]
71 | GO:0006004 | 0.0135913015670342 | [NAME] process | biological_process | The chemical reactions and pathways involving fucose, or 6-deoxygalactose, which has two enantiomers, D-fucose and L-fucose. [ISBN:[PHONE]]
71 | GO:0009945 | 0.0135913015670342 | radial axis specification | biological_process | The establishment, maintenance and elaboration of an axis that initiates at a point and radiates outward from the point. [GOC:dph, GOC:go_curators, GOC:isa_complete]
71 | GO:0010113 | 0.0135913015670342 | negative regulation of systemic acquired resistance | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of systemic acquired resistance. [GOC:sm]
71 | GO:0010247 | 0.0135913015670342 | detection of phosphate ion | biological_process | The series of events in which a phosphate ion stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
71 | GO:0010255 | 0.0135913015670342 | glucose mediated signaling pathway | biological_process | The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes. [GOC:sm]
71 | GO:0042353 | 0.0135913015670342 | fucose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of fucose (6-deoxygalactose). [GOC:jl]
71 | GO:0090352 | 0.0135913015670342 | regulation of nitrate assimilation | biological_process | Any process that modulates the rate, frequency, or extent of the uptake, from the environment, of nitrates, inorganic or organic salts and esters of nitric acid and the subsequent reduction of nitrate ion to other, less highly oxidized, inorganic nitrogenous substances. [GOC:tb]
71 | GO:0043543 | 0.0162313207289748 | protein acylation | biological_process | The addition of an acyl group, any group or radical of the form RCO- where R is an organic group, to a protein amino acid. [GOC:jl]
71 | GO:0007062 | 0.0215009214188228 | sister chromatid cohesion | biological_process | The cell cycle process in which the sister chromatids of a replicated chromosome are associated with each other. [GOC:jh, GOC:mah, ISBN:[PHONE]]
71 | GO:0009605 | 0.0228534061780476 | response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:hb]
71 | GO:0000184 | 0.0270000236792087 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | biological_process | The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. [GOC:krc, GOC:ma, PMID:10025395]
71 | GO:0000212 | 0.0270000236792087 | meiotic spindle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the microtubule spindle during a meiotic cell cycle. [GOC:mah]
71 | GO:0002832 | 0.0270000236792087 | negative regulation of response to biotic stimulus | biological_process | Any process that stops, prevents, or reduces the frequency, rate, or extent of a response to biotic stimulus. [GOC:add]
71 | GO:0005987 | 0.0270000236792087 | sucrose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
71 | GO:0009757 | 0.0270000236792087 | hexose mediated signaling | biological_process | A series of molecular signals mediated by the detection of hexose. [GOC:sm]
71 | GO:0009969 | 0.0270000236792087 | xyloglucan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of xyloglucan, the cross-linking glycan composed of (1->4)-beta-D glucan backbone substituted at regular intervals with beta-D-xylosyl-(1->6) residues, which is present in the primary cell wall of most higher plants. [GOC:sm]
71 | GO:0010256 | 0.0270000236792087 | endomembrane system organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endomembrane system. [GOC:mah, GOC:sm]
71 | GO:0031538 | 0.0270000236792087 | negative regulation of anthocyanin metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. [GOC:mah]
71 | GO:0043901 | 0.0270000236792087 | negative regulation of multi-organism process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
71 | GO:0046505 | 0.0270000236792087 | sulfolipid metabolic process | biological_process | The chemical reactions and pathways involving sulfolipids, any compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid. [PMID:9751667]
71 | GO:0046506 | 0.0270000236792087 | sulfolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sulfolipid, a compound containing a sulfonic acid residue joined by a carbon-sulfur bond to a lipid. [PMID:9751667]
71 | GO:0090306 | 0.0270000236792087 | spindle assembly involved in meiosis | biological_process | The aggregation, arrangement and bonding together of a set of components to form the spindle that contributes to the process of meiosis. [GOC:tb, GOC:vw]
71 | GO:0016036 | 0.0300315324909551 | cellular response to phosphate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]
71 | GO:0009639 | 0.0304570026178313 | response to red or far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:ai, GOC:mtg_far_red]
71 | GO:0016071 | 0.0323149665733538 | mRNA metabolic process | biological_process | The chemical reactions and pathways involving mRNA, [NAME], which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. [ISBN:[PHONE]]
71 | GO:0009640 | 0.035995351951394 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
71 | GO:0001678 | 0.0402285902160494 | cellular glucose homeostasis | biological_process | A cellular homeostatic process involved in the maintenance of an internal steady state of glucose within a cell or between a cell and its external environment. [GOC:dph, GOC:go_curators, GOC:tb]
71 | GO:0002683 | 0.0402285902160494 | negative regulation of immune system process | biological_process | Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune system process. [GOC:add]
71 | GO:0009864 | 0.0402285902160494 | induced systemic resistance, [NAME] mediated signaling pathway | biological_process | The series of molecular signals mediated by [NAME] involved in induced systemic resistance. [GOC:jy]
71 | GO:0010031 | 0.0402285902160494 | circumnutation | biological_process | The organismal movement by which the tip of a plant organ follows a spiral pattern as a consequence of growth. [GOC:mtg_MIT_16mar07, ISBN:[PHONE]]
71 | [NAME] | 0.0402285902160494 | regulation of systemic acquired resistance | biological_process | Any process that modulates the frequency, rate or extent of systemic acquired resistance. [GOC:sm]
71 | GO:0045824 | 0.0402285902160494 | negative regulation of innate immune response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the innate immune response. [GOC:go_curators]
71 | GO:0046352 | 0.0402285902160494 | disaccharide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of disaccharides, sugars composed of two monosaccharide units. [GOC:ai]
71 | GO:0050777 | 0.0402285902160494 | negative regulation of immune response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. [GOC:ai]
71 | GO:0050879 | 0.0402285902160494 | multicellular organismal movement | biological_process | Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism. [GOC:dph, GOC:mtg_muscle, GOC:tb]
71 | GO:0051156 | 0.0402285902160494 | glucose 6-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
71 | GO:0070370 | 0.0402285902160494 | cellular heat acclimation | biological_process | Any process that increases heat tolerance of a cell in response to high temperatures. [GOC:jp]
71 | GO:0071333 | 0.0402285902160494 | cellular response to glucose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. [GOC:mah]
71 | GO:0080024 | 0.0402285902160494 | [NAME] process | biological_process | The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants. [PMID:18725356]
71 | GO:0080026 | 0.0402285902160494 | response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [PMID:18725356]
71 | GO:2000070 | 0.0402285902160494 | regulation of response to water deprivation | biological_process | Any process that modulates the frequency, rate or extent of response to water deprivation. [GOC:obol]
71 | GO:0031048 | 0.045691121204016 | chromatin silencing by small RNA | biological_process | Repression of transcription by conversion of large regions of DNA into heterochromatin, directed by small RNAs sharing sequence identity to the repressed region. [GOC:dph, GOC:mtg_lung, GOC:ns]
71 | GO:0009787 | 0.0480576016814952 | regulation of abscisic acid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of signal transduction mediated by abscisic acid. [GOC:lr]
72 | GO:0009911 | 0.00258110198342522 | positive regulation of flower development | biological_process | Any process that activates or increases the frequency, rate or extent of flower development. [GOC:go_curators]
72 | GO:0051181 | 0.0028305304692252 | cofactor transport | biological_process | The directed movement of a cofactor into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A cofactor is a substance that is required for the activity of an enzyme or other protein. [GOC:ai]
72 | GO:0046854 | 0.00660904772046468 | phosphatidylinositol phosphorylation | biological_process | The process of introducing one or more phosphate groups into a phosphatidylinositol, any glycerophosphoinositol having one phosphatidyl group esterified to one of the hydroxy groups of inositol. [ISBN:[PHONE]]
72 | GO:0006499 | 0.00871257786075671 | N-terminal protein myristoylation | biological_process | The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. [GOC:mah]
72 | GO:0048825 | 0.00994631305028136 | cotyledon development | biological_process | The process whose specific outcome is the progression of the cotyledon over time, from its formation to the mature structure. The cotyledon is the modified leaf (seed leaf), found as part of the embryo in plant seeds. It is involved in either storage or absorption of food reserves. Dicotyledonous seeds contain two cotyledons, while monocotyledonous seeds contain only one. The cotyledons may appear above ground and show photosynthetic activity in the seedling. [GOC:devbiol, GOC:tb, PO:0020030]
72 | GO:0006434 | 0.0140709945634719 | [NAME] aminoacylation | biological_process | The process of coupling serine to seryl-tRNA, catalyzed by [NAME] synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
72 | GO:0006788 | 0.0140709945634719 | heme oxidation | biological_process | The chemical reactions and pathways resulting in the loss of electrons from one or more atoms in heme. [GOC:mah]
72 | GO:0007263 | 0.0140709945634719 | nitric oxide mediated signal transduction | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via nitric oxide (NO). Includes synthesis of nitric oxide, receptors/sensors for nitric oxide (such as soluble guanylyl cyclase/sGC) and downstream effectors that further transmit the signal within the cell. Nitric oxide transmits its downstream effects through either cyclic GMP (cGMP)-dependent or independent mechanisms. [GOC:jl, PMID:21549190]
72 | GO:0008105 | 0.0140709945634719 | [NAME] | biological_process | Any process in which a protein is transported to, or maintained in, a specific location such that it is distributed asymmetrically. [GOC:ma]
72 | GO:0010024 | 0.0140709945634719 | phytochromobilin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytochromobilin, which involves the oxidative cleavage of heme by a heme oxygenase(HO) to form biliverdin IX alpha. [PMID:11402195]
72 | GO:0010034 | 0.0140709945634719 | response to acetate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus. [GOC:sm]
72 | GO:0010480 | 0.0140709945634719 | microsporocyte differentiation | biological_process | The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell. [CL:0000248, PMID:16751349]
72 | GO:0015880 | 0.0140709945634719 | coenzyme A transport | biological_process | The directed movement of coenzyme A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. [GOC:ai]
72 | GO:0019919 | 0.0140709945634719 | peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | biological_process | The process of methylation of peptidyl-arginine to form peptidyl-N(omega),N(omega)-dimethyl-L-arginine. [[NAME]:AA0068, RESID:AA0069]
72 | GO:0034969 | 0.0140709945634719 | histone arginine methylation | biological_process | The modification of a histone by addition of a methyl group to an arginine residue. [GOC:mah]
72 | GO:0035247 | 0.0140709945634719 | peptidyl-arginine omega-N-methylation | biological_process | The addition of a methyl group onto a terminal nitrogen (omega nitrogen) atom of an arginine residue in a protein. [PMID:14705965, RESID:AA0067, RESID:AA0068, RESID:AA0069]
72 | GO:0035349 | 0.0140709945634719 | coenzyme A transmembrane transport | biological_process | The process in which coenzyme A is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. [GOC:bf]
72 | GO:0043462 | 0.0140709945634719 | regulation of ATPase activity | biological_process | Any process that modulates the rate of ATP hydrolysis by an ATPase. [GOC:jl]
72 | GO:0045176 | 0.0140709945634719 | apical protein localization | biological_process | Any process in which a protein is transported to, or maintained in, apical regions of the cell. [GOC:bf]
72 | [NAME] | 0.0140709945634719 | coenzyme transport | biological_process | The directed movement of a coenzyme into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A coenzyme is any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [GOC:ai]
72 | GO:0051202 | 0.0140709945634719 | [NAME] process | biological_process | The chemical reactions and pathways involving phytochromobilin, the linear tetrapyrrole chromophore required for plant phytochrome photoactivity. [PMID:11500553]
72 | GO:0052558 | 0.0140709945634719 | induction by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism activates the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
72 | GO:0052559 | 0.0140709945634719 | induction by symbiont of host immune response | biological_process | Any process in which an organism activates the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0071106 | 0.0140709945634719 | adenosine 3',5'-bisphosphate [NAME] | biological_process | The directed movement of adenosine 3',5'-bisphosphate across a membrane into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:37240, GOC:mah, PubChem_Compound:159296]
72 | GO:0071260 | 0.0140709945634719 | cellular response to mechanical stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus. [GOC:mah]
72 | [NAME] | 0.0140709945634719 | cellular response to acetate | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acetate stimulus. [GOC:mah]
72 | GO:0071494 | 0.0140709945634719 | cellular response to UV-C | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 290 nm. [GOC:mah]
72 | GO:0080180 | 0.0140709945634719 | 2-methylguanosine metabolic process | biological_process | The chemical reactions and pathways involving 2-methylguanosine. [GOC:tb]
72 | GO:0080185 | 0.0140709945634719 | effector dependent induction by symbiont of host immune response | biological_process | Any process that involves recognition of an effector, and by which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. Effectors are proteins secreted into the host cell by pathogenic microbes, presumably to alter host immune response signaling. The best characterized effectors are bacterial effectors delivered into the host cell by type III secretion system (TTSS). Effector-triggered immunity (ETI) involves the direct or indirect recognition of an effector protein by the host (for example through plant resistance or R proteins) and subsequent activation of host immune response. [GOC:DHL, PMID:16497589]
72 | GO:0097056 | 0.0140709945634719 | selenocysteinyl-tRNA(Sec) biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of selenocysteinyl-tRNA(Sec). This process occurs through the following steps: a unique serine-tRNA with a UGA recognizing anticodon is first aminoacylated with serine; this is then phosphorylated by phosphoseryl-tRNA[Ser]Sec kinase; lastly, selenium is swapped for the phosphate on the serine. [CHEBI:13166, GOC:yaf, PMID:15317934, UniPathway:UPA00906]
72 | GO:0007020 | 0.0159259281332899 | microtubule nucleation | biological_process | The 'de novo' formation of a microtubule, in which tubulin heterodimers form metastable oligomeric aggregates, some of which go on to support formation of a complete microtubule. [NAME] nucleation usually occurs from a specific site within a cell. [ISBN:[PHONE]]
72 | GO:0015931 | 0.0182199584562937 | nucleobase-containing compound transport | biological_process | The directed movement of nucleobases, nucleosides, nucleotides and nucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
72 | GO:0016114 | 0.0210578491700881 | terpenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure. [GOC:ai]
72 | GO:0035556 | 0.0215083283025872 | intracellular signal transduction | biological_process | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:signaling, ISBN:[PHONE]]
72 | GO:0006721 | 0.0265027170822567 | terpenoid metabolic process | biological_process | The chemical reactions and pathways involving terpenoids, any member of a class of compounds characterized by an isoprenoid chemical structure and including derivatives with various functional groups. [ISBN:[PHONE]]
72 | GO:0046907 | 0.0274026718162442 | intracellular transport | biological_process | The directed movement of substances within a cell. [GOC:ai]
72 | GO:0009605 | 0.0274996449267323 | response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:hb]
72 | GO:0006537 | 0.0279462148541712 | glutamate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glutamate, the anion of 2-aminopentanedioic acid. [GOC:go_curators]
72 | GO:0006562 | 0.0279462148541712 | proline catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
72 | GO:0006657 | 0.0279462148541712 | CDP-choline pathway | biological_process | The phosphatidylcholine biosynthetic process that begins with the phosphorylation of choline and ends with the combination of CDP-choline with diacylglycerol to form phosphatidylcholine. [ISBN:[PHONE], MetaCyc:PWY3O-450]
72 | GO:0010225 | 0.0279462148541712 | response to UV-C | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-C radiation stimulus. UV-C radiation (UV-C light) spans the wavelengths 100 to 290 nm. [GOC:tb]
72 | GO:0018195 | 0.0279462148541712 | peptidyl-arginine modification | biological_process | The modification of peptidyl-arginine. [GOC:go_curators]
72 | GO:0018216 | 0.0279462148541712 | peptidyl-arginine methylation | biological_process | The addition of a methyl group to an arginine residue in a protein. [GOC:mah]
72 | GO:0035246 | 0.0279462148541712 | peptidyl-arginine N-methylation | biological_process | The addition of a methyl group onto a nitrogen atom of an arginine residue in a protein. [GOC:bf]
72 | GO:0043132 | 0.0279462148541712 | NAD transport | biological_process | The directed movement of nicotinamide adenine dinucleotide into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore; transport may be of either the oxidized form, NAD, or the reduced form, NADH. [GOC:jl]
72 | GO:0043157 | 0.0279462148541712 | response to cation stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of cation stress, an increase or decrease in the concentration of positively charged ions in the environment. [GOC:jl, PMID:14762213]
72 | GO:0044375 | 0.0279462148541712 | regulation of peroxisome size | biological_process | Any process that modulates the volume of a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:jl]
72 | GO:0048564 | 0.0279462148541712 | photosystem I assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem I complex on the thylakoid membrane. [GOC:go_curators]
72 | GO:0071229 | 0.0279462148541712 | cellular response to acid | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an acid stimulus. [GOC:mah]
72 | GO:0071230 | 0.0279462148541712 | cellular response to amino acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amino acid stimulus. An amino acid is a carboxylic acids containing one or more amino groups. [CHEBI:33709, GOC:mah]
72 | GO:1901701 | 0.02845613597138 | cellular response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
72 | GO:0051649 | 0.0292466833488143 | establishment of localization in cell | biological_process | The directed movement of a substance or cellular entity, such as a protein complex or organelle, to a specific location within, or in the membrane of, a cell. [GOC:ai, GOC:dph, GOC:tb]
72 | [NAME] | 0.030843764704693 | cellular lipid metabolic process | biological_process | The chemical reactions and pathways involving lipids, as carried out by individual cells. [GOC:jl]
72 | GO:0008299 | 0.0346203262974311 | isoprenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:[PHONE]]
72 | GO:0009416 | 0.038003336191191 | response to light stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light stimulus, electromagnetic radiation of wavelengths classified as infrared, visible or ultraviolet light. [GOC:go_curators, [NAME]]
72 | GO:0009626 | 0.0399135853376075 | plant-type hypersensitive response | biological_process | The rapid, localized death of plant cells in response to invasion by a pathogen. [[NAME]]
72 | GO:0034050 | 0.0399135853376075 | host programmed cell death induced by symbiont | biological_process | Cell death in a host resulting from activation of host endogenous cellular processes after direct or indirect interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). An example of direct interaction is contact with penetrating hyphae of a fungus; an example of indirect interaction is encountering symbiont-secreted molecules. [GOC:pamgo_curators]
72 | GO:0006720 | 0.0399877956101561 | isoprenoid metabolic process | biological_process | The chemical reactions and pathways involving isoprenoid compounds, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:[PHONE]]
72 | GO:0009867 | 0.0414824122879675 | [NAME] mediated signaling pathway | biological_process | A series of molecular signals mediated by [NAME]. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
72 | GO:0071395 | 0.0414824122879675 | cellular response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:mah]
72 | GO:0006656 | 0.0416283538646551 | phosphatidylcholine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. [ISBN:[PHONE]]
72 | GO:0010019 | 0.0416283538646551 | chloroplast-nucleus signaling pathway | biological_process | The process in which a molecular signal is transduced between the chloroplast and nucleus, such that expression of nuclear encoding photosynthetic proteins is coupled with chloroplast biogenesis. [PMID:8972595]
72 | GO:0031935 | 0.0416283538646551 | regulation of chromatin silencing | biological_process | Any process that affects the rate, extent or location of chromatin silencing. [GOC:mah]
72 | GO:0045732 | 0.0416283538646551 | positive regulation of protein catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:go_curators]
72 | GO:0046470 | 0.0416283538646551 | phosphatidylcholine metabolic process | biological_process | The chemical reactions and pathways involving phosphatidylcholines, any of a class of glycerophospholipids in which the phosphatidyl group is esterified to the hydroxyl group of choline. They are important constituents of cell membranes. [ISBN:[PHONE]]
72 | GO:0052031 | 0.0416283538646551 | modulation by symbiont of host defense response | biological_process | Any process in which an organism modulates the frequency, rate or extent of the defense response of its host, the response mounted by the host in response to the presence of the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0052173 | 0.0416283538646551 | response to defenses of other organism involved in symbiotic interaction | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0052200 | 0.0416283538646551 | response to host defenses | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0052255 | 0.0416283538646551 | modulation by organism of defense response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism modulates the frequency, rate or extent of the defense response of a second organism, the response mounted by that organism in response to the presence of the first organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0052552 | 0.0416283538646551 | modulation by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism modulates the frequency, rate or extent of the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
72 | GO:0052553 | 0.0416283538646551 | modulation by symbiont of host immune response | biological_process | Any process in which an organism modulates the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0052555 | 0.0416283538646551 | positive regulation by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism activates, maintains or increases the frequency, rate or extent of the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
72 | GO:0052556 | 0.0416283538646551 | positive regulation by symbiont of host immune response | biological_process | Any process in which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0052564 | 0.0416283538646551 | response to immune response of other organism involved in symbiotic interaction | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0052572 | 0.0416283538646551 | response to host immune response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
72 | GO:0060359 | 0.0416283538646551 | response to ammonium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ammonium ion stimulus. [GOC:dph, GOC:tb]
72 | GO:0075136 | 0.0416283538646551 | response to host | biological_process | Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:pamgo_curators]
72 | GO:0080050 | 0.0416283538646551 | regulation of seed development | biological_process | Any process that modulates the frequency, rate or extent of seed development. [PMID:19141706]
72 | GO:0080188 | 0.0416283538646551 | RNA-directed DNA methylation | biological_process | An epigenetic RNA-based gene silencing process first elucidated in plants whereby 24-nt small interfering RNAs (siRNAs) guide DNA methyltransferases to the siRNA-generating genomic loci and other loci that are homologous to the siRNAs for de novo DNA methylation. In general this process consists of three phases: biogenesis of siRNAs, scaffold RNA production, and the formation of the guiding complex that recruits de novo DNA methyltransferases to the target loci. [PMID:21420348]
72 | GO:2000034 | 0.0416283538646551 | regulation of seed maturation | biological_process | Any process that modulates the frequency, rate or extent of seed maturation. [GOC:obol]
72 | GO:0051641 | 0.0419335062255863 | cellular localization | biological_process | A localization process that takes place at the cellular level; as a result of a cellular localization process, a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell. [GOC:ai, GOC:mah]
72 | GO:0046148 | 0.0421136671713548 | pigment biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
72 | GO:0009894 | 0.0442203539598079 | regulation of catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of substances. [GOC:go_curators]
72 | GO:0032870 | 0.0463678217839983 | cellular response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:mah]
72 | GO:0008610 | 0.0468539261869725 | lipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators]
72 | GO:0009314 | 0.0468744876867409 | response to radiation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation. [GOC:jl, Wikipedia:Electromagnetic_radiation]
72 | GO:0019932 | 0.0476351582624871 | second-messenger-mediated signaling | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via a second messenger; a small molecule or ion that can be quickly generated or released from intracellular stores, and can diffuse within the cell. Second-messenger signaling includes production or release of the second messenger, and effectors downstream of the second messenger that further transmit the signal within the cell. [GOC:signaling, [NAME], PMID:15221855, Wikipedia:Second_messenger_system]
72 | GO:0071495 | 0.047977740180273 | cellular response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:mah]
73 | GO:0045036 | 3.66729492427141e-10 | protein targeting to chloroplast | biological_process | The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:[PHONE]]
73 | GO:0009658 | 9.73733559577092e-08 | chloroplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid]
73 | GO:0006399 | 1.74527864660702e-06 | tRNA metabolic process | biological_process | The chemical reactions and pathways involving tRNA, transfer RNA, a class of relatively small RNA molecules responsible for mediating the insertion of amino acids into the sequence of nascent polypeptide chains during protein synthesis. Transfer RNA is characterized by the presence of many unusual minor bases, the function of which has not been completely established. [ISBN:[PHONE]]
73 | GO:0006364 | 1.57583032931947e-05 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
73 | GO:0009073 | 3.6169472852515e-05 | aromatic amino acid family biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
73 | GO:0006412 | 0.000129164739089013 | translation | biological_process | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA. Translation ends with the release of a polypeptide chain from the ribosome. [GOC:go_curators]
73 | GO:0009902 | 0.00031365067613522 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
73 | GO:0042793 | 0.000319764404854412 | transcription from plastid promoter | biological_process | The synthesis of RNA from a plastid DNA template, usually by a specific plastid [NAME] polymerase. [GOC:jl, ISBN:[PHONE]]
73 | GO:0007005 | 0.000611331917707341 | mitochondrion organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
73 | GO:0045893 | 0.000640794587825363 | positive regulation of transcription, DNA-dependent | biological_process | Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
73 | GO:0010027 | 0.000781143253237412 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
73 | GO:0019288 | 0.00115167027945877 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
73 | GO:0016226 | 0.00159452923637809 | iron-sulfur cluster assembly | biological_process | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
73 | GO:0006098 | 0.00285081122121185 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
73 | GO:0009560 | 0.00336773279741881 | embryo sac egg cell differentiation | biological_process | The process in which an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu]
73 | GO:0010206 | 0.00369083446039531 | photosystem II repair | biological_process | Proteolysis of the damaged D1 protein and re-assembly of a new D1 subunit in the photosystem II following photoinhibition. [GOC:sm]
73 | GO:0006913 | 0.00631742436056716 | nucleocytoplasmic transport | biological_process | The directed movement of molecules between the nucleus and the cytoplasm. [GOC:go_curators]
73 | GO:0006400 | 0.00755308515456995 | tRNA modification | biological_process | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. [GOC:curators]
73 | GO:0048440 | 0.00874431537794147 | carpel development | biological_process | The process whose specific outcome is the progression of the carpel over time, from its formation to the mature structure. A carpel is an organ (generally believed to be a modified foliar unit) at the centre of a flower, bearing one or more ovules and having its margins fused together or with other carpels to enclose the ovule in an ovary, and consisting also of a stigma and usually a style. [GOC:go_curators]
73 | GO:0051604 | 0.0105431330220749 | protein maturation | biological_process | Any process leading to the attainment of the full functional capacity of a protein. [GOC:ai]
73 | GO:0006626 | 0.0113994378907993 | protein targeting to mitochondrion | biological_process | The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. [GOC:mcc, ISBN:[PHONE]]
73 | GO:0070585 | 0.0113994378907993 | protein localization to mitochondrion | biological_process | A process in which a protein is transported to, or maintained in, a location within the mitochondrion. [GOC:ecd]
73 | GO:0072655 | 0.0113994378907993 | establishment of protein localization to mitochondrion | biological_process | The directed movement of a protein to a specific location in the mitochondrion. [GOC:mah]
73 | GO:0017038 | 0.0117525652984119 | protein import | biological_process | The directed movement of proteins into a cell or organelle. [GOC:ai]
73 | GO:0000741 | 0.0124516673628139 | karyogamy | biological_process | The creation of a single nucleus from multiple nuclei as a result of fusing the lipid bilayers that surround each nuclei. [GOC:elh]
73 | [NAME] | 0.0124516673628139 | organelle fusion | biological_process | The creation of a single organelle from two or more organelles. [GOC:jid]
73 | GO:0006091 | 0.0144002164512728 | generation of precursor metabolites and energy | biological_process | The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances. [GOC:jl]
73 | GO:0048481 | 0.0152677686733029 | ovule development | biological_process | The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. [GOC:tb]
73 | [NAME] | 0.0163490971887853 | plant-type ovary development | biological_process | The process whose specific outcome is the progression of an ovary that produces an ovule over time, from its formation to the mature structure. The ovary is the enlarged basal portion of a carpel and matures into a fruit. An ovule is the multicellular structure that gives rise to and contains the female reproductive cells, and develops into a seed. [GOC:bf, GOC:tb, ISBN:[PHONE]]
73 | GO:0045037 | 0.0187902951328828 | protein import into chloroplast stroma | biological_process | The import of proteins into the chloroplast stroma. Import depends on ATP hydrolysis catalyzed by stromal chaperones. Chloroplast stromal proteins, such as the S subunit of rubisco, have a N-terminal stromal-import sequence of about 44 amino acids which is cleaved from the protein precursor after import. [ISBN:[PHONE]]
73 | GO:0010207 | 0.0192170996939958 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
73 | GO:0000002 | 0.0196674128558802 | mitochondrial genome maintenance | biological_process | The maintenance of the structure and integrity of the mitochondrial genome; includes replication and segregation of the mitochondrial chromosome. [GOC:ai, GOC:vw]
73 | GO:0002098 | 0.0196674128558802 | tRNA wobble uridine modification | biological_process | The process in which a uridine in position 34 of a tRNA is post-transcriptionally modified. [GOC:hjd, ISBN:155581073X]
73 | GO:0003156 | 0.0196674128558802 | regulation of organ formation | biological_process | Any process that modulates the rate, frequency or extent of organ formation. Organ formation is the process pertaining to the initial formation of an organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. [GOC:dph, GOC:mtg_heart, GOC:tb]
73 | GO:0006424 | 0.0196674128558802 | glutamyl-tRNA aminoacylation | biological_process | The process of coupling glutamate to glutamyl-tRNA, catalyzed by glutamyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'- adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
73 | GO:0006898 | 0.0196674128558802 | receptor-mediated endocytosis | biological_process | An endocytosis process in which cell surface receptors ensure specificity of transport. A specific receptor on the cell surface binds tightly to the extracellular macromolecule (the ligand) that it recognizes; the plasma-membrane region containing the receptor-ligand complex then undergoes endocytosis, forming a transport vesicle containing the receptor-ligand complex and excluding most other plasma-membrane proteins. Receptor-mediated endocytosis generally occurs via clathrin-coated pits and vesicles. [GOC:mah, ISBN:[PHONE]]
73 | GO:0009663 | 0.0196674128558802 | plasmodesma organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a plasmodesma, a fine cytoplasmic channel, found in all higher plants, that connects the cytoplasm of one cell to that of an adjacent cell. [GOC:mah]
73 | GO:0010084 | 0.0196674128558802 | specification of organ axis polarity | biological_process | The process in which the polarity of an organ axis is specified. [GOC:tb]
73 | GO:0010157 | 0.0196674128558802 | response to chlorate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chlorate stimulus. [GOC:sm]
73 | GO:0072583 | 0.0196674128558802 | clathrin-mediated endocytosis | biological_process | An endocytosis process that begins when material is taken up into clathrin-coated pits, which then pinch off to form clathrin-coated endocytic vesicles. [GOC:BHF, GOC:mah, PMID:18498251, PMID:8970738, PMID:9234965]
73 | GO:0080182 | 0.0196674128558802 | histone H3-K4 trimethylation | biological_process | The modification of histone H3 by addition of three methyl groups to lysine at position 4 of the histone. [GOC:BHF, GOC:se, GOC:tb]
73 | GO:1900618 | 0.0196674128558802 | regulation of shoot system morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of shoot morphogenesis. [GOC:TermGenie]
73 | GO:1901371 | 0.0196674128558802 | regulation of leaf morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of leaf morphogenesis. [GOC:TermGenie]
73 | GO:1901668 | 0.0196674128558802 | regulation of superoxide dismutase activity | biological_process | Any process that modulates the frequency, rate or extent of superoxide dismutase activity. [GOC:TermGenie]
73 | GO:1901671 | 0.0196674128558802 | positive regulation of superoxide dismutase activity | biological_process | Any process that activates or increases the frequency, rate or extent of superoxide dismutase activity. [GOC:TermGenie]
73 | GO:2000025 | 0.0196674128558802 | regulation of leaf formation | biological_process | Any process that modulates the frequency, rate or extent of leaf formation. [GOC:obol]
73 | GO:0015979 | 0.0215390576829287 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
73 | GO:0009790 | 0.023670093236496 | embryo development | biological_process | The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu]
73 | GO:0006406 | 0.0263720025567991 | mRNA export from nucleus | biological_process | The directed movement of mRNA from the nucleus to the cytoplasm. [GOC:ma]
73 | GO:0051028 | 0.0263720025567991 | mRNA transport | biological_process | The directed movement of mRNA, messenger ribonucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
73 | GO:0035303 | 0.0282539390212754 | regulation of dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule. [GOC:bf]
73 | GO:0035304 | 0.0282539390212754 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
73 | GO:0009793 | 0.0287651192099757 | embryo development ending in seed dormancy | biological_process | The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]
73 | GO:0006403 | 0.0330829874201013 | RNA localization | biological_process | A process in which RNA is transported to, or maintained in, a specific location. [GOC:ai]
73 | GO:0006405 | 0.0330829874201013 | RNA export from nucleus | biological_process | The directed movement of RNA from the nucleus to the cytoplasm. [GOC:ma]
73 | GO:0050657 | 0.0330829874201013 | nucleic acid transport | biological_process | The directed movement of nucleic acids, single or double-stranded polynucleotides involved in the storage, transmission and transfer of genetic information, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, ISBN:[PHONE]]
73 | GO:0050658 | 0.0330829874201013 | RNA transport | biological_process | The directed movement of RNA, ribonucleic acids, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
73 | GO:0051236 | 0.0330829874201013 | establishment of RNA localization | biological_process | The directed movement of RNA to a specific location. [GOC:ai]
73 | GO:0018205 | 0.0340853106547365 | peptidyl-lysine modification | biological_process | The modification of peptidyl-lysine. [GOC:go_curators]
73 | GO:0009640 | 0.0343439619947917 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
73 | GO:0006089 | 0.035499236737468 | [NAME] process | biological_process | The chemical reactions and pathways involving lactate, the anion of lactic acid. [ISBN:[PHONE]]
73 | GO:0009438 | 0.035499236737468 | [NAME] process | biological_process | The chemical reactions and pathways involving methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid. [CHEBI:17158, GOC:ai]
73 | GO:0009873 | 0.035499236737468 | ethylene mediated signaling pathway | biological_process | A series of molecular signals mediated by ethylene ([NAME]). [GOC:jy]
73 | GO:0019243 | 0.035499236737468 | [NAME] process to D-lactate | biological_process | The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, into D-lactate via the intermediate S-lactoyl-glutathione. Glutathione is used in the first step of the pathway and then regenerated in the second step. [GOC:ai]
73 | GO:0051596 | 0.035499236737468 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid. [GOC:ai]
73 | GO:0046185 | 0.0380042541653817 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O. [GOC:ai]
73 | GO:0051168 | 0.0380042541653817 | nuclear export | biological_process | The directed movement of substances out of the nucleus. [GOC:ai]
73 | GO:0071369 | 0.0380042541653817 | cellular response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:mah]
73 | GO:0006839 | 0.0384524915105824 | mitochondrial transport | biological_process | Transport of substances into, out of or within a mitochondrion. [GOC:ai]
73 | GO:0002097 | 0.0389511019998811 | tRNA wobble base modification | biological_process | The process in which the nucleotide at position 34 in the anticodon of a tRNA is post-transcriptionally modified. [GOC:hjd, ISBN:155581073X]
73 | GO:0016973 | 0.0389511019998811 | poly(A)+ mRNA export from nucleus | biological_process | The directed movement of poly(A)+ mRNA out of the nucleus into the cytoplasm. [GOC:ai]
73 | GO:0018023 | 0.0389511019998811 | peptidyl-lysine trimethylation | biological_process | The methylation of peptidyl-lysine to form peptidyl-N6,N6,N6-trimethyl-L-lysine. [RESID:AA0074]
73 | GO:0018105 | 0.0389511019998811 | peptidyl-serine phosphorylation | biological_process | The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037]
73 | GO:0018209 | 0.0389511019998811 | peptidyl-serine modification | biological_process | The modification of peptidyl-serine. [GOC:go_curators]
73 | GO:0030488 | 0.0389511019998811 | tRNA methylation | biological_process | The posttranscriptional addition of methyl groups to specific residues in a tRNA molecule. [GOC:mah]
73 | GO:0035404 | 0.0389511019998811 | histone-serine phosphorylation | biological_process | The modification of histones by addition of a phosphate group to a serine residue. [GOC:bf]
73 | GO:0042780 | 0.0389511019998811 | tRNA 3'-end processing | biological_process | The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA. [GOC:go_curators]
73 | GO:0043987 | 0.0389511019998811 | histone H3-S10 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone. [GOC:jl]
73 | GO:0045694 | 0.0389511019998811 | regulation of embryo sac egg cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of embryo sac egg cell differentiation. [GOC:go_curators, GOC:mtg_plant]
73 | GO:0048577 | 0.0389511019998811 | negative regulation of short-day photoperiodism, flowering | biological_process | Any process that stops, prevents or reduces short-day photoperiodism, where the response associated with the photoperiodism is flowering. [NAME] is defined by the switch from the vegetative to the reproductive phase. [GOC:jid, GOC:pj, ISBN:[PHONE], ISBN:[PHONE], ISBN:[PHONE]]
73 | GO:0051341 | 0.0389511019998811 | regulation of oxidoreductase activity | biological_process | Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [EC:1.-.-.-, GOC:ai]
73 | GO:0051353 | 0.0389511019998811 | positive regulation of oxidoreductase activity | biological_process | Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. [GOC:ai]
73 | [NAME] | 0.0389511019998811 | simple leaf morphogenesis | biological_process | The leaf morphogenesis process which results in the shaping of a simple leaf. A simple leaf is a leaf in which the lamina is undivided. [GOC:dph, GOC:sdb_2009, GOC:tb]
73 | GO:0080158 | 0.0389511019998811 | chloroplast ribulose bisphosphate carboxylase complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a chloroplast ribulose bisphosphate carboxylase (RubisCO) complex. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex. [PMID:20561259]
73 | GO:1901259 | 0.0389511019998811 | chloroplast rRNA processing | biological_process | Any rRNA processing that takes place in chloroplast. [GOC:TermGenie]
73 | GO:0006606 | 0.0403322952114895 | protein import into nucleus | biological_process | The directed movement of a protein from the cytoplasm to the nucleus. [GOC:jl]
73 | GO:0044744 | 0.0403322952114895 | protein targeting to nucleus | biological_process | The process of directing proteins towards the nucleus, usually using signals contained within the protein. [GOC:jl]
73 | GO:0034504 | 0.0422637418713574 | protein localization to nucleus | biological_process | A process in which a protein is transported to, or maintained in, a location within the nucleus. [GOC:ecd]
73 | GO:0051170 | 0.0422637418713574 | nuclear import | biological_process | The directed movement of substances into the nucleus. [GOC:ai]
73 | GO:0006354 | 0.0430401625262428 | DNA-dependent transcription, elongation | biological_process | The extension of an RNA molecule after transcription initiation and promoter clearance at a DNA-dependent RNA polymerase promoter by the addition of ribonucleotides catalyzed by an RNA polymerase. [GOC:mah, GOC:txnOH, PMID:15020047, PMID:18280161]
73 | GO:0016071 | 0.0437817728241098 | mRNA metabolic process | biological_process | The chemical reactions and pathways involving mRNA, [NAME], which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. [ISBN:[PHONE]]
73 | GO:0009853 | 0.044246834515618 | photorespiration | biological_process | A light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. The substrate is glycolate formed in large quantities in chloroplasts from 2-phosphoglycolate generated from ribulose 1,5-bisphosphate by the action of ribulose-bisphosphate carboxylase; the glycolate enters the peroxisomes where it is converted by glycolate oxidase to glyoxylate which undergoes transamination to glycine. This then passes into the mitochondria where it is decarboxylated forming one molecule of serine for every two molecules of glycine. This pathway also exists in photosynthetic bacteria. [ISBN:[PHONE]]
73 | GO:0010038 | 0.0445002763018518 | response to metal ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. [GOC:sm]
73 | GO:0000338 | 0.0460450523077274 | protein deneddylation | biological_process | The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc]
73 | GO:0010388 | 0.0460450523077274 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
73 | GO:0010103 | 0.0462815450752523 | stomatal complex morphogenesis | biological_process | The process in which the anatomical structures of the stomatal complex are generated and organized. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [GOC:tair_curators]
73 | GO:0019684 | 0.0465590873151544 | photosynthesis, light reaction | biological_process | The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I. [http://www.arabidopsis.org]
73 | GO:0010228 | 0.047071819384487 | vegetative to reproductive phase transition of meristem | biological_process | The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb]
73 | GO:0046686 | 0.048218919831433 | response to cadmium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cadmium (Cd) ion stimulus. [GOC:ai]
74 | GO:0009723 | 0.0010180478917565 | response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:jl]
74 | GO:0043069 | 0.00199649831399716 | negative regulation of programmed cell death | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
74 | GO:0009620 | 0.00220048237745357 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
74 | GO:0071215 | 0.00438916906782014 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
74 | GO:0052542 | 0.00705573461295605 | defense response by callose deposition | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
74 | GO:0010200 | 0.00724338033859505 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
74 | GO:0010363 | 0.00964647573713491 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
74 | GO:0002679 | 0.010541815807554 | respiratory burst involved in defense response | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [GOC:add, ISBN:[PHONE], PMID:12789499]
74 | GO:0045730 | 0.010541815807554 | respiratory burst | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [ISBN:[PHONE]]
74 | GO:0009738 | 0.0126349358874188 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
74 | GO:0007631 | 0.0153501758874672 | feeding behavior | biological_process | Behavior associated with the intake of food. [GOC:mah]
74 | GO:0032388 | 0.0153501758874672 | positive regulation of intracellular transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of substances within cells. [GOC:mah]
74 | GO:0042966 | 0.0153501758874672 | [NAME] protein biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the biotin carboxyl carrier protein, a subunit of acetyl-coenzyme A carboxylase. [GOC:go_curators, PMID:8102363]
74 | GO:0044002 | 0.0153501758874672 | acquisition of nutrients from host | biological_process | The process that begins with the production and formation of structures and molecules in an organism that are required for the acquisition and utilization of nutrients from its host organism, and the ends with the acquirement of the nutrients. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:cc, GOC:jl]
74 | GO:0044111 | 0.0153501758874672 | development involved in symbiotic interaction | biological_process | The progression of an organism from an initial condition to a later condition, occurring when the organism is in a symbiotic interaction. [GO:jl, GOC:pamgo_curators]
74 | GO:0044115 | 0.0153501758874672 | development of symbiont involved in interaction with host | biological_process | The progression of an organism from an initial condition to a later condition, occurring in, on or near the exterior of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:jl, GOC:pamgo_curators]
74 | GO:0046824 | 0.0153501758874672 | positive regulation of nucleocytoplasmic transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of substances between the nucleus and the cytoplasm. [GOC:bf]
74 | GO:0046825 | 0.0153501758874672 | regulation of protein export from nucleus | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of proteins from the nucleus to the cytoplasm. [GOC:bf]
74 | GO:0046827 | 0.0153501758874672 | positive regulation of protein export from nucleus | biological_process | Any process that activates or increases the frequency, rate or extent of directed movement of proteins from the nucleus into the cytoplasm. [GOC:bf]
74 | GO:0051222 | 0.0153501758874672 | positive regulation of protein transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
74 | GO:0051816 | 0.0153501758874672 | acquisition of nutrients from other organism during symbiotic interaction | biological_process | The production of structures and/or molecules in an organism that are required for the acquisition and/or utilization of nutrients obtained from a second organism, where the two organisms are in a symbiotic interaction. [GOC:cc]
74 | GO:0052093 | 0.0153501758874672 | formation of specialized structure for nutrient acquisition from host | biological_process | The assembly by an organism of a cellular component or anatomical structure for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052095 | 0.0153501758874672 | formation of specialized structure for nutrient acquisition from other organism involved in symbiotic interaction | biological_process | The assembly by an organism of a cellular component or anatomical structure for the purpose of obtaining nutrients from a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052096 | 0.0153501758874672 | formation by symbiont of syncytium involving giant cell for nutrient acquisition from host | biological_process | The assembly by an organism of a syncytium, a nematode-induced multi-nucleate and physiologically active aggregation of fused root cells which exclusively provides the nematode with nourishment during its sedentary life, for the purpose of obtaining nutrients from its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:pamgo_curators]
74 | GO:0052558 | 0.0153501758874672 | induction by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism activates the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
74 | GO:0052559 | 0.0153501758874672 | induction by symbiont of host immune response | biological_process | Any process in which an organism activates the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0080185 | 0.0153501758874672 | effector dependent induction by symbiont of host immune response | biological_process | Any process that involves recognition of an effector, and by which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. Effectors are proteins secreted into the host cell by pathogenic microbes, presumably to alter host immune response signaling. The best characterized effectors are bacterial effectors delivered into the host cell by type III secretion system (TTSS). Effector-triggered immunity (ETI) involves the direct or indirect recognition of an effector protein by the host (for example through plant resistance or R proteins) and subsequent activation of host immune response. [GOC:DHL, PMID:16497589]
74 | GO:0090316 | 0.0153501758874672 | positive regulation of intracellular protein transport | biological_process | Any process that decreases the frequency, rate or extent of the directed movement of proteins within cells. [GOC:tb]
74 | GO:0009816 | 0.0162928331219619 | defense response to bacterium, incompatible interaction | biological_process | A response of an organism to a bacterium that prevents the occurrence or spread of disease. [GOC:lr]
74 | GO:0009817 | 0.0188202122656607 | defense response to fungus, incompatible interaction | biological_process | A response of an organism to a fungus that prevents the occurrence or spread of disease. [GOC:lr]
74 | GO:0050832 | 0.0206169586943128 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
74 | GO:0009755 | 0.0231562383809139 | hormone-mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of a hormone. [GOC:sm]
74 | GO:0014070 | 0.0241476677655543 | response to organic cyclic compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus. [CHEBI:33832, GOC:ef]
74 | GO:0009753 | 0.024275168533928 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
74 | GO:0002684 | 0.0304124288058116 | positive regulation of immune system process | biological_process | Any process that activates or increases the frequency, rate, or extent of an immune system process. [GOC:add]
74 | GO:0050778 | 0.0304124288058116 | positive regulation of immune response | biological_process | Any process that activates or increases the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. [GOC:ai]
74 | GO:0002697 | 0.0304671410425084 | regulation of immune effector process | biological_process | Any process that modulates the frequency, rate, or extent of an immune effector process. [GOC:add]
74 | GO:0006611 | 0.0304671410425084 | protein export from nucleus | biological_process | The directed movement of a protein from the nucleus into the cytoplasm. [GOC:jl]
74 | GO:0007610 | 0.0304671410425084 | behavior | biological_process | The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions. [GOC:ems, ISBN:[PHONE]]
74 | GO:0009729 | 0.0304671410425084 | detection of brassinosteroid stimulus | biological_process | The series of events in which a brassinosteroid stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
74 | GO:0033157 | 0.0304671410425084 | regulation of intracellular protein transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of proteins within cells. [GOC:mah]
74 | GO:0034051 | 0.0304671410425084 | negative regulation of plant-type hypersensitive response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the hypersensitive response in a plant. [GOC:pamgo_curators]
74 | GO:0046822 | 0.0304671410425084 | regulation of nucleocytoplasmic transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of substances between the nucleus and the cytoplasm. [GOC:bf]
74 | GO:0050688 | 0.0304671410425084 | regulation of defense response to virus | biological_process | Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism. [GOC:ai]
74 | GO:0051223 | 0.0304671410425084 | regulation of protein transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of a protein into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
74 | GO:0070201 | 0.0304671410425084 | regulation of establishment of protein localization | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of a protein to a specific location. [GOC:BHF, GOC:mah]
74 | GO:0080005 | 0.0304671410425084 | photosystem stoichiometry adjustment | biological_process | Adjustment of Photosystem I/Photosystem II ratio in response to light conditions. The function of photosystem stoichiometry adjustment is to compensate for any deficiency in energy conversion at either photosystem I or photosystem II by increasing the quantity the photosystem that will otherwise become the rate-limiting to overall photosynthesis. [PMID:11607105]
74 | GO:0035556 | 0.031363068808236 | intracellular signal transduction | biological_process | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:signaling, ISBN:[PHONE]]
74 | [NAME] | 0.0378263984600362 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
74 | GO:0002683 | 0.0453544018327942 | negative regulation of immune system process | biological_process | Any process that stops, prevents, or reduces the frequency, rate, or extent of an immune system process. [GOC:add]
74 | GO:0006808 | 0.0453544018327942 | regulation of nitrogen utilization | biological_process | Any process that modulates the frequency, rate or extent of nitrogen utilization. [GOC:go_curators]
74 | GO:0009970 | 0.0453544018327942 | cellular response to sulfate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate. [GOC:sm]
74 | GO:0019740 | 0.0453544018327942 | nitrogen utilization | biological_process | A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary nitrogen source, usually ammonia, and then activates genes to scavenge the last traces of the primary nitrogen source and to transport and metabolize alternative nitrogen sources. The utilization process begins when the cell or organism detects nitrogen levels, includes the activation of genes whose products detect, transport or metabolize nitrogen-containing substances, and ends when nitrogen is incorporated into the cell or organism's metabolism. [GOC:mah, GOC:mlg]
74 | GO:0032386 | 0.0453544018327942 | regulation of intracellular transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of substances within cells. [GOC:mah]
74 | GO:0045824 | 0.0453544018327942 | negative regulation of innate immune response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the innate immune response. [GOC:go_curators]
74 | GO:0050777 | 0.0453544018327942 | negative regulation of immune response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. [GOC:ai]
74 | GO:0051050 | 0.0453544018327942 | positive regulation of transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
74 | GO:0052031 | 0.0453544018327942 | modulation by symbiont of host defense response | biological_process | Any process in which an organism modulates the frequency, rate or extent of the defense response of its host, the response mounted by the host in response to the presence of the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052173 | 0.0453544018327942 | response to defenses of other organism involved in symbiotic interaction | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052200 | 0.0453544018327942 | response to host defenses | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052255 | 0.0453544018327942 | modulation by organism of defense response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism modulates the frequency, rate or extent of the defense response of a second organism, the response mounted by that organism in response to the presence of the first organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052552 | 0.0453544018327942 | modulation by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism modulates the frequency, rate or extent of the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
74 | GO:0052553 | 0.0453544018327942 | modulation by symbiont of host immune response | biological_process | Any process in which an organism modulates the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052555 | 0.0453544018327942 | positive regulation by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism activates, maintains or increases the frequency, rate or extent of the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
74 | GO:0052556 | 0.0453544018327942 | positive regulation by symbiont of host immune response | biological_process | Any process in which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052564 | 0.0453544018327942 | response to immune response of other organism involved in symbiotic interaction | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0052572 | 0.0453544018327942 | response to host immune response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
74 | GO:0060341 | 0.0453544018327942 | regulation of cellular localization | biological_process | Any process that modulates the frequency, rate or extent of a process in which a cell, a substance, or a cellular entity is transported to, or maintained in a specific location within or in the membrane of a cell. [GOC:dph, GOC:tb]
74 | GO:0071456 | 0.0453544018327942 | cellular response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:mah]
74 | GO:0075136 | 0.0453544018327942 | response to host | biological_process | Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:pamgo_curators]
74 | GO:0002252 | 0.0457422843126246 | immune effector process | biological_process | Any process of the immune system that can potentially contribute to an immune response. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05, ISBN:[PHONE]]
75 | GO:0009220 | 2.37655487880067e-06 | pyrimidine ribonucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyrimidine ribonucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar. [GOC:go_curators, ISBN:[PHONE]]
75 | GO:0001676 | 0.000395849828881319 | long-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving long-chain fatty acids, A long-chain fatty acid is a fatty acid with a chain length between C13 and C22. [CHEBI:15904, GOC:ajp]
75 | GO:0016559 | 0.000568772200794025 | peroxisome fission | biological_process | The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments. [GOC:mah, PMID:11687502, PMID:14754507]
75 | GO:0006406 | 0.00105083432696182 | mRNA export from nucleus | biological_process | The directed movement of mRNA from the nucleus to the cytoplasm. [GOC:ma]
75 | [NAME] | 0.00112724452190146 | cellular response to reactive nitrogen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive nitrogen species stimulus. [GOC:sl, GOC:TermGenie, PMID:22504638]
75 | GO:0016567 | 0.00113810130789239 | protein ubiquitination | biological_process | The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]
75 | GO:0034660 | 0.00500982297751597 | [NAME] process | biological_process | The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs). [GOC:mah]
75 | GO:0033365 | 0.00555165566695274 | protein localization to organelle | biological_process | A process in which a protein is transported to, or maintained in, a location within an organelle. [GOC:mah]
75 | GO:0002213 | 0.00646367700076898 | defense response to insect | biological_process | A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism. [GOC:add]
75 | GO:0017038 | 0.0079246432720871 | protein import | biological_process | The directed movement of proteins into a cell or organelle. [GOC:ai]
75 | GO:0009845 | 0.0105301528498342 | seed germination | biological_process | The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis. [PMID:8281041]
75 | GO:0009793 | 0.0110812529170574 | embryo development ending in seed dormancy | biological_process | The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]
75 | [NAME] | 0.0133361266211653 | lipid storage | biological_process | The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. [GOC:dph, GOC:mah, GOC:tb, PMID:11102830]
75 | GO:0001682 | 0.0139110968980334 | tRNA 5'-leader removal | biological_process | Generation of the mature 5'-end of the tRNA, usually via an endonucleolytic cleavage by [NAME] [PMID:11592395]
75 | GO:0016074 | 0.0139110968980334 | snoRNA metabolic process | biological_process | The chemical reactions and pathways involving [NAME], small nucleolar RNA, any of a class of small RNAs that are associated with the eukaryotic nucleus as components of small nucleolar ribonucleoproteins. They participate in the processing or modifications of many RNAs, mostly ribosomal RNAs (rRNAs) though snoRNAs are also known to target other classes of RNA, including spliceosomal RNAs, tRNAs, and mRNAs via a stretch of sequence that is complementary to a sequence in the targeted RNA. [GOC:krc]
75 | GO:0043144 | 0.0139110968980334 | snoRNA processing | biological_process | Any process involved in the conversion of a primary small nucleolar [NAME] ([NAME]) transcript into a mature [NAME]. [GOC:go_curators, PMID:12773397]
75 | GO:0045039 | 0.0139110968980334 | protein import into mitochondrial inner membrane | biological_process | The process comprising the import of proteins into the mitochondrion from outside the organelle and their insertion into the mitochondrial inner membrane. The translocase of the outer membrane complex mediates the passage of these proteins across the outer membrane, after which they are guided by either of two inner membrane translocase complexes into their final destination in the inner membrane. [GOC:mcc, GOC:vw, PMID:18672008]
75 | GO:0045947 | 0.0139110968980334 | negative regulation of translational initiation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of translational initiation. [GOC:go_curators]
75 | GO:0071249 | 0.0139110968980334 | cellular response to nitrate | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. [GOC:mah]
75 | GO:0090351 | 0.0139866954487453 | seedling development | biological_process | The process whose specific outcome is the progression of the seedling over time, beginning with seed germination and ending when the first adult leaves emerge. [GOC:tb, PO:0007131]
75 | GO:0050826 | 0.0154469352861937 | response to freezing | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius. [GOC:jl]
75 | GO:0071241 | 0.0156182393292516 | cellular response to inorganic substance | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. [GOC:mah]
75 | GO:0006184 | 0.0165689754312187 | GTP catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of GTP, guanosine triphosphate. [ISBN:[PHONE]]
75 | GO:0046039 | 0.0165689754312187 | GTP metabolic process | biological_process | The chemical reactions and pathways involving GTP, guanosine triphosphate. [GOC:go_curators]
75 | GO:1901069 | 0.0165689754312187 | guanosine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of guanosine-containing compounds (guanosines). [GOC:TermGenie]
75 | GO:0043543 | 0.0175410134386495 | protein acylation | biological_process | The addition of an acyl group, any group or radical of the form RCO- where R is an organic group, to a protein amino acid. [GOC:jl]
75 | GO:0034470 | 0.018211725118784 | ncRNA processing | biological_process | Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. [GOC:mah]
75 | GO:1901068 | 0.0202036110343045 | guanosine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving guanosine-containing compounds (guanosines). [GOC:TermGenie]
75 | GO:0009790 | 0.0214332669671448 | embryo development | biological_process | The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu]
75 | GO:0006396 | 0.0223047363369827 | RNA processing | biological_process | Any process involved in the conversion of one or more primary [NAME] transcripts into one or more mature RNA molecules. [GOC:mah]
75 | GO:0051604 | 0.0228514372229175 | protein maturation | biological_process | Any process leading to the attainment of the full functional capacity of a protein. [GOC:ai]
75 | GO:0006626 | 0.0242428978964257 | protein targeting to mitochondrion | biological_process | The process of directing proteins towards and into the mitochondrion, usually mediated by mitochondrial proteins that recognize signals contained within the imported protein. [GOC:mcc, ISBN:[PHONE]]
75 | GO:0070585 | 0.0242428978964257 | protein localization to mitochondrion | biological_process | A process in which a protein is transported to, or maintained in, a location within the mitochondrion. [GOC:ecd]
75 | GO:0072655 | 0.0242428978964257 | establishment of protein localization to mitochondrion | biological_process | The directed movement of a protein to a specific location in the mitochondrion. [GOC:mah]
75 | GO:0006419 | 0.0276308689385987 | alanyl-tRNA aminoacylation | biological_process | The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
75 | GO:0006768 | 0.0276308689385987 | [NAME] process | biological_process | The chemical reactions and pathways involving biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid; the (+) enantiomer is very widely distributed in cells and serves as a carrier in a number of enzymatic beta-carboxylation reactions. [ISBN:[PHONE]]
75 | GO:0007006 | 0.0276308689385987 | mitochondrial membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrial membrane, either of the lipid bilayer surrounding a mitochondrion. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
75 | GO:0007007 | 0.0276308689385987 | inner mitochondrial membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial inner membrane. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
75 | GO:0009102 | 0.0276308689385987 | biotin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of biotin, cis-tetrahydro-2-oxothieno(3,4-d)imidazoline-4-valeric acid. [ISBN:[PHONE]]
75 | GO:0044375 | 0.0276308689385987 | regulation of peroxisome size | biological_process | Any process that modulates the volume of a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:jl]
75 | GO:0080148 | 0.0276308689385987 | negative regulation of response to water deprivation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to water deprivation. Response to water deprivation is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [PMID:18835996]
75 | GO:0042793 | 0.0286871872613175 | transcription from plastid promoter | biological_process | The synthesis of RNA from a plastid DNA template, usually by a specific plastid [NAME] polymerase. [GOC:jl, ISBN:[PHONE]]
75 | GO:0010228 | 0.0289868568824262 | vegetative to reproductive phase transition of meristem | biological_process | The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb]
75 | [NAME] | 0.0315500407543755 | seed development | biological_process | The process whose specific outcome is the progression of the seed over time, from its formation to the mature structure. A seed is a propagating organ formed in the sexual reproductive cycle of gymnosperms and angiosperms, consisting of a protective coat enclosing an embryo and food reserves. [GOC:jid, PO:0009010]
75 | GO:0009756 | 0.0318741938977505 | carbohydrate mediated signaling | biological_process | A series of molecular signals mediated by the detection of carbohydrate. [GOC:sm]
75 | GO:0010182 | 0.0318741938977505 | sugar mediated signaling pathway | biological_process | The process in which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes. [PMID:9014361]
75 | GO:0072594 | 0.0344392399016682 | establishment of protein localization to organelle | biological_process | The directed movement of a protein to a specific location on or in an organelle. Encompasses establishment of localization in the membrane or lumen of a membrane-bounded organelle. [GOC:mah]
75 | GO:0009553 | 0.0374144964397877 | embryo sac development | biological_process | The process whose specific outcome is the progression of the embryo sac over time, from its formation to the mature structure. The process begins with the meiosis of the megasporocyte to form four haploid megaspores. Three of the megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. The two polar nuclei fuse resulting in a mononucleate diploid endosperm mother cell. The three antipodal cells degenerate. [GOC:mtg_plant, GOC:tb]
75 | GO:0010154 | 0.0380208967921727 | fruit development | biological_process | The process whose specific outcome is the progression of the fruit over time, from its formation to the mature structure. The fruit is a reproductive body of a seed plant. [GOC:sm]
75 | GO:0009640 | 0.03871309751876 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
75 | GO:0007005 | 0.0387811476326734 | mitochondrion organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrion; includes mitochondrial morphogenesis and distribution, and replication of the mitochondrial genome as well as synthesis of new mitochondrial components. [GOC:dph, GOC:jl, GOC:mah, GOC:sgd_curators, PMID:9786946]
75 | GO:0010074 | 0.0400608344152222 | maintenance of meristem identity | biological_process | The process in which an organism retains a population of meristem cells, preventing the commitment of all stem cell progeny to a differentiated cell fate. [GOC:tb]
75 | GO:0071322 | 0.0406177728993582 | cellular response to carbohydrate stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. [GOC:mah]
75 | GO:0000266 | 0.0411619173076179 | mitochondrial fission | biological_process | The division of a mitochondrion within a cell to form two or more separate mitochondrial compartments. [PMID:11038192]
75 | GO:0006829 | 0.0411619173076179 | zinc ion transport | biological_process | The directed movement of zinc (Zn) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
75 | GO:0051865 | 0.0411619173076179 | protein autoubiquitination | biological_process | The ubiquitination by a protein of one or more of its own amino acid residues, or residues on an identical protein. Ubiquitination occurs on the lysine residue by formation of an isopeptide crosslink. [GOC:ai]
75 | GO:0070370 | 0.0411619173076179 | cellular heat acclimation | biological_process | Any process that increases heat tolerance of a cell in response to high temperatures. [GOC:jp]
75 | GO:0071577 | 0.0411619173076179 | zinc ion transmembrane transport | biological_process | A process in which a zinc ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:BHF, GOC:mah]
75 | GO:0071731 | 0.0411619173076179 | response to nitric oxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf]
75 | GO:0071732 | 0.0411619173076179 | cellular response to nitric oxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf]
75 | GO:2000070 | 0.0411619173076179 | regulation of response to water deprivation | biological_process | Any process that modulates the frequency, rate or extent of response to water deprivation. [GOC:obol]
75 | GO:0048229 | 0.0414404742052652 | gametophyte development | biological_process | The process whose specific outcome is the progression of the gametophyte over time, from its formation to the mature structure. The gametophyte is the gamete-producing individual or phase in the life cycle having alternation of generations. An example of this process is found in Arabidopsis thaliana. [GOC:jid, PO:0009004]
75 | GO:0006364 | 0.0437118650225329 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
75 | GO:0016072 | 0.0448513862869577 | rRNA metabolic process | biological_process | The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes. [ISBN:[PHONE]]
75 | GO:0006498 | 0.0463874277910062 | N-terminal protein lipidation | biological_process | The covalent attachment of a lipid group to the amino terminus of a protein. [GOC:jl]
75 | GO:0006499 | 0.0463874277910062 | N-terminal protein myristoylation | biological_process | The covalent attachment of a myristoyl group to the N-terminal amino acid residue of a protein. [GOC:mah]
75 | GO:0018377 | 0.0463874277910062 | protein myristoylation | biological_process | The covalent attachment of a myristoyl group to a protein. [GOC:ai]
76 | GO:0045037 | 8.04470521094512e-06 | protein import into chloroplast stroma | biological_process | The import of proteins into the chloroplast stroma. Import depends on ATP hydrolysis catalyzed by stromal chaperones. Chloroplast stromal proteins, such as the S subunit of rubisco, have a N-terminal stromal-import sequence of about 44 amino acids which is cleaved from the protein precursor after import. [ISBN:[PHONE]]
76 | GO:0010027 | 0.000304032848365696 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
76 | GO:0042793 | 0.000356212579245593 | transcription from plastid promoter | biological_process | The synthesis of RNA from a plastid DNA template, usually by a specific plastid [NAME] polymerase. [GOC:jl, ISBN:[PHONE]]
76 | GO:0000373 | 0.000492919471664446 | Group II intron splicing | biological_process | The splicing of Group II introns. This occurs by a ribozymic mechanism where the intron sequence forms a distinct 3D structure, characteristic of Group II introns and containing splice site consensus sequences, that is involved in catalyzing the splicing reactions, though protein factors are also required in vivo. Splicing occurs by a series of two transesterification reactions (mechanistically similar to those for splicing of nuclear mRNAs) initiated by a bulged adenosine residue within the intron sequence as the initiating nucleophile. The intron is excised as a lariat. [GOC:krc, PMID:11377794]
76 | GO:0009902 | 0.00165851076655295 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
76 | GO:0016226 | 0.00239198543678076 | iron-sulfur cluster assembly | biological_process | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
76 | GO:0002679 | 0.00660620906527204 | respiratory burst involved in defense response | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [GOC:add, ISBN:[PHONE], PMID:12789499]
76 | GO:0006364 | 0.00896665667286792 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
76 | GO:0016117 | 0.00921174840094092 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
76 | GO:0048467 | 0.0119397212975084 | gynoecium development | biological_process | The process whose specific outcome is the progression of the gynoecium over time, from its formation to the mature structure. The gynoecium is the collective name for the carpels of a flower. [GOC:go_curators, PO:0008062]
76 | GO:0006177 | 0.0129517109050561 | GMP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of GMP, guanosine monophosphate. [ISBN:[PHONE]]
76 | GO:0006535 | 0.0129517109050561 | cysteine biosynthetic process from serine | biological_process | The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators]
76 | GO:0006646 | 0.0129517109050561 | phosphatidylethanolamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. [ISBN:[PHONE]]
76 | GO:0015783 | 0.0129517109050561 | GDP-fucose transport | biological_process | The directed movement of GDP-fucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. GDP-fucose is a substance composed of fucose in glycosidic linkage with guanosine diphosphate. [GOC:ai]
76 | GO:0016050 | 0.0129517109050561 | vesicle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle. [GOC:mah]
76 | GO:0035524 | 0.0129517109050561 | [NAME] | biological_process | The directed movement of proline, pyrrolidine-2-carboxylic acid, across a membrane by means of some agent such as a transporter or pore. [GOC:vw]
76 | GO:0036079 | 0.0129517109050561 | purine nucleotide-sugar transport | biological_process | The directed movement of a purine nucleotide-sugar into, out of or within a cell. Purine nucleotide-sugars are purine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. [GOC:sart, PMID:19948734]
76 | GO:0046037 | 0.0129517109050561 | GMP metabolic process | biological_process | The chemical reactions and pathways involving GMP, guanosine monophosphate. [GOC:go_curators]
76 | GO:0046337 | 0.0129517109050561 | phosphatidylethanolamine metabolic process | biological_process | The chemical reactions and pathways involving phosphatidylethanolamine, any of a class of glycerophospholipids in which a phosphatidyl group is esterified to the hydroxyl group of ethanolamine. It is a major structural phospholipid in mammalian systems. It tends to be more abundant than phosphatidylcholine in the internal membranes of the cell and is an abundant component of prokaryotic membranes. [CHEBI:16038, GOC:curators, ISBN:[PHONE]]
76 | GO:0048766 | 0.0129517109050561 | [NAME] initiation | biological_process | The process in which a protrusion or bulge is formed at the site of plant root hair outgrowth. [GOC:jid, PMID:12468740]
76 | GO:0090480 | 0.0129517109050561 | purine nucleotide-sugar transmembrane transport | biological_process | The directed movement of a purine nucleotide-sugar across a membrane. Purine nucleotide-sugars are purine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. [GOC:tb]
76 | GO:1901070 | 0.0129517109050561 | guanosine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of guanosine-containing compounds (guanosines). [GOC:TermGenie]
76 | GO:0090407 | 0.0143082743311496 | organophosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the biosynthesis of deoxyribose phosphate, the phosphorylated sugar 2-deoxy-erythro-pentose. [GOC:chem_mtg]
76 | GO:0009790 | 0.0144352143529669 | embryo development | biological_process | The process whose specific outcome is the progression of an embryo from its formation until the end of its embryonic life stage. The end of the embryonic stage is organism-specific. For example, for mammals, the process would begin with zygote formation and end with birth. For insects, the process would begin at zygote formation and end with larval hatching. For plant zygotic embryos, this would be from zygote formation to the end of seed dormancy. For plant vegetative embryos, this would be from the initial determination of the cell or group of cells to form an embryo until the point when the embryo becomes independent of the parent plant. [GOC:go_curators, GOC:isa_complete, GOC:mtg_sensu]
76 | GO:0010604 | 0.0160336712908841 | positive regulation of macromolecule metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
76 | GO:0034754 | 0.0167191139400347 | cellular hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells. [GOC:mah]
76 | GO:0010207 | 0.0188362850074981 | photosystem II assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a photosystem II complex on the thylakoid membrane. The photosystem II complex consists of at least 20 polypeptides and around 80 cofactors in most organisms. [GOC:aa, GOC:pz]
76 | GO:0048731 | 0.0217645351442864 | system development | biological_process | The process whose specific outcome is the progression of an organismal system over time, from its formation to the mature structure. A system is a regularly interacting or interdependent group of organs or tissues that work together to carry out a given biological process. [GOC:dph, GOC:jid]
76 | GO:0006081 | 0.0229294823981349 | cellular aldehyde metabolic process | biological_process | The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. [GOC:go_curators, ISBN:[PHONE]]
76 | GO:0006779 | 0.0230494855169458 | porphyrin-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
76 | GO:0009793 | 0.0232575883808987 | embryo development ending in seed dormancy | biological_process | The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]
76 | GO:0008654 | 0.0235189624660054 | phospholipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
76 | GO:0033014 | 0.0239556063834475 | tetrapyrrole biosynthetic process | biological_process | The chemical reactions and pathways leading to the formation of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
76 | GO:0048481 | 0.0251604786777874 | ovule development | biological_process | The process whose specific outcome is the progression of the ovule over time, from its formation to the mature structure. The ovule is the structure in seed plants enclosing the female gametophyte, and is composed of the nucellus, one or two integuments, and the funiculus; it develops into the seed. [GOC:tb]
76 | GO:0010239 | 0.0257377194475676 | chloroplast mRNA processing | biological_process | Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs. [GOC:tb, PMID:9648738]
76 | GO:0015693 | 0.0257377194475676 | magnesium ion transport | biological_process | The directed movement of magnesium ([NAME]) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
76 | GO:0015785 | 0.0257377194475676 | UDP-galactose transport | biological_process | The directed movement of UDP-galactose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-galactose is a substance composed of galactose in glycosidic linkage with uridine diphosphate. [GOC:ai]
76 | GO:0015786 | 0.0257377194475676 | UDP-glucose transport | biological_process | The directed movement of UDP-glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-glucose is a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai]
76 | GO:0072334 | 0.0257377194475676 | UDP-galactose transmembrane transport | biological_process | The directed movement of UDP-galactose across a membrane into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
76 | GO:1901259 | 0.0257377194475676 | chloroplast rRNA processing | biological_process | Any rRNA processing that takes place in chloroplast. [GOC:TermGenie]
76 | GO:0045893 | 0.0259791837646209 | positive regulation of transcription, DNA-dependent | biological_process | Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
76 | GO:0051254 | 0.0259791837646209 | positive regulation of RNA metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
76 | [NAME] | 0.026522202284474 | plant-type ovary development | biological_process | The process whose specific outcome is the progression of an ovary that produces an ovule over time, from its formation to the mature structure. The ovary is the enlarged basal portion of a carpel and matures into a fruit. An ovule is the multicellular structure that gives rise to and contains the female reproductive cells, and develops into a seed. [GOC:bf, GOC:tb, ISBN:[PHONE]]
76 | GO:0010628 | 0.026620147282565 | positive regulation of gene expression | biological_process | Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
76 | GO:0045935 | 0.0279336131252861 | positive regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
76 | GO:1901566 | 0.0282371642866073 | organonitrogen compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of organonitrogen compound. [GOC:pr, GOC:TermGenie]
76 | GO:0019288 | 0.0285334362668537 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
76 | GO:0019682 | 0.0285334362668537 | glyceraldehyde-3-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glyceraldehyde-3-phosphate, an important intermediate in glycolysis. [GOC:ai, ISBN:[PHONE]]
76 | GO:0051173 | 0.0292895395301691 | positive regulation of nitrogen compound metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
76 | GO:0006090 | 0.0293470542132918 | pyruvate metabolic process | biological_process | The chemical reactions and pathways involving pyruvate, 2-oxopropanoate. [GOC:go_curators]
76 | GO:0009240 | 0.0301752919210942 | isopentenyl diphosphate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. [GOC:jl, ISBN:[PHONE]]
76 | GO:0046490 | 0.0301752919210942 | isopentenyl diphosphate metabolic process | biological_process | The chemical reactions and pathways involving isopentenyl diphosphate, an isomer of dimethylallyl diphosphate and the key precursor of all isoprenoids. [ISBN:[PHONE]]
76 | GO:0006644 | 0.031404070952932 | phospholipid metabolic process | biological_process | The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
76 | GO:0010557 | 0.0328681709970639 | positive regulation of macromolecule biosynthetic process | biological_process | Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
76 | GO:0010374 | 0.0330856504083216 | stomatal complex development | biological_process | The process whose specific outcome is the progression of the stomatal complex over time from its formation to the mature structure. The stomatal complex is the stomatal guard cells and their associated epidermal cells. [PMID:17259259]
76 | GO:0009791 | 0.0336554618294099 | post-embryonic development | biological_process | The process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. See embryonic development. [GOC:go_curators]
76 | GO:0031325 | 0.035810985918875 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
76 | GO:0009893 | 0.0379124113239683 | positive regulation of metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
76 | GO:0010343 | 0.0383601194354989 | singlet oxygen-mediated programmed cell death | biological_process | Programmed cell death induced by singlet oxygen. Programmed cell death is the cell death resulting from activation of endogenous cellular processes. [GOC:mtg_apoptosis, PMID:17075038]
76 | GO:0071452 | 0.0383601194354989 | cellular response to singlet oxygen | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst. [GOC:mah]
76 | GO:0097468 | 0.0383601194354989 | programmed cell death in response to reactive oxygen species | biological_process | Cell death resulting from activation of endogenous cellular processes and occurring as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mtg_apoptosis]
76 | GO:2000037 | 0.0383601194354989 | regulation of stomatal complex patterning | biological_process | Any process that modulates the frequency, rate or extent of stomatal complex patterning. [GOC:obol]
76 | GO:0009692 | 0.0410056242127561 | ethylene metabolic process | biological_process | The chemical reactions and pathways involving ethylene (C2-H4, [NAME]), a simple hydrocarbon gas that can function in plants as a growth regulator. [ISBN:[PHONE]]
76 | GO:0009693 | 0.0410056242127561 | ethylene biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of ethylene (C2-H4, [NAME]), a simple hydrocarbon gas that can function in plants as a growth regulator. [ISBN:[PHONE]]
76 | GO:0043449 | 0.0410056242127561 | cellular alkene metabolic process | biological_process | The chemical reactions and pathways involving an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n, as carried out by individual cells. [CHEBI:32878, GOC:jl, Wikipedia:[NAME]]
76 | GO:0043450 | 0.0410056242127561 | alkene biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alkene, any acyclic branched or unbranched hydrocarbon having one carbon-carbon double bond and the general formula CnH2n. [CHEBI:32878, GOC:jl, Wikipedia:[NAME]]
76 | GO:1900673 | 0.0410056242127561 | [NAME] process | biological_process | The chemical reactions and pathways involving olefin. [GOC:mengo_curators, GOC:TermGenie]
76 | GO:1900674 | 0.0410056242127561 | olefin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of olefin. [GOC:mengo_curators, GOC:TermGenie]
76 | GO:0009684 | 0.0471899265420798 | indoleacetic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants. [ISBN:[PHONE]]
76 | GO:0044767 | 0.0476949317467918 | single-organism developmental process | biological_process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition, involving only one organism. [GOC:jl]
77 | GO:0016558 | 0.00387229441135225 | protein import into peroxisome matrix | biological_process | The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:[PHONE], PMID:11687502, PMID:11988772]
77 | GO:0000956 | 0.00466280197816792 | nuclear-transcribed mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. [GOC:krc]
77 | GO:0009606 | 0.00562506674759179 | tropism | biological_process | The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it. [GOC:curators, ISBN:[PHONE]]
77 | GO:0010351 | 0.00641502993603732 | lithium ion transport | biological_process | The directed movement of lithium ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [PMID:17270011]
77 | GO:0016579 | 0.0102263286466931 | protein deubiquitination | biological_process | The removal of one or more ubiquitin groups from a protein. [GOC:ai]
77 | GO:0000338 | 0.0141070070753203 | protein deneddylation | biological_process | The removal of a ubiquitin-like protein of the NEDD8 type from a protein. [GOC:krc]
77 | GO:0010388 | 0.0141070070753203 | cullin deneddylation | biological_process | The modification of cullins by removal of ubiquitin-like protein NEDD8 (RUB1). [PMID:17307927]
77 | [NAME] | 0.0164900437217952 | gravitropism | biological_process | The orientation of plant parts under the stimulation of gravity. [ISBN:[PHONE]]
77 | GO:0000398 | 0.0165962387420806 | mRNA splicing, via spliceosome | biological_process | The joining together of exons from one or more primary transcripts of messenger [NAME] (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. [GOC:krc, ISBN:[PHONE], ISBN:[PHONE]]
77 | GO:0006997 | 0.0165962387420806 | nucleus organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the nucleus. [GOC:dph, GOC:ems, GOC:jl, GOC:mah]
77 | GO:0000375 | 0.0208181896677173 | RNA splicing, via transesterification reactions | biological_process | Splicing of RNA via a series of two transesterification reactions. [GOC:krc]
77 | GO:0000377 | 0.0208181896677173 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process | Splicing of RNA via a series of two transesterification reactions with a bulged adenosine residue from the intron branch point as the initiating nucleophile. When the initial RNA for the splicing reaction is a single molecule (cis splicing), the excised intron is released in a lariat structure. [GOC:krc, PMID:11377794]
77 | GO:0009629 | 0.0208652065683781 | response to gravity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus. [GOC:hb]
77 | GO:0000045 | 0.0230252638312347 | autophagic vacuole assembly | biological_process | The formation of a double membrane-bounded structure, the autophagosome, that occurs when a specialized membrane sac, called the isolation membrane, starts to enclose a portion of the cytoplasm. [PMID:9412464]
77 | GO:0002240 | 0.0230252638312347 | response to molecule of oomycetes origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of oomycetes origin. [GOC:rl, GOC:sm]
77 | GO:0006213 | 0.0230252638312347 | pyrimidine nucleoside metabolic process | biological_process | The chemical reactions and pathways involving any pyrimidine nucleoside, one of a family of organic molecules consisting of a pyrimidine base covalently bonded to ribose (a ribonucleoside) or deoxyribose (a deoxyribonucleoside). [GOC:jl, ISBN:[PHONE]]
77 | GO:0006651 | 0.0230252638312347 | diacylglycerol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues. [CHEBI:18035, GOC:curators]
77 | GO:0006884 | 0.0230252638312347 | cell volume homeostasis | biological_process | Any process involved in maintaining the steady state of a cell's volume. The cell's volume refers to the three-dimensional space occupied by a cell. [GOC:dph, GOC:go_curators, GOC:tb]
77 | GO:0008653 | 0.0230252638312347 | lipopolysaccharide metabolic process | biological_process | The chemical reactions and pathways involving lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. Lipopolysaccharides consist three covalently linked regions, lipid A, core oligosaccharide, and an O side chain. Lipid A is responsible for the toxicity of the lipopolysaccharide. [ISBN:[PHONE]]
77 | GO:0009103 | 0.0230252638312347 | lipopolysaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria. [GOC:ai]
77 | GO:0010219 | 0.0230252638312347 | regulation of vernalization response | biological_process | Any process that modulates the frequency, rate or extent of the vernalization response, by which induction of flowering is normally caused by extended exposure to cold temperatures. [GOC:sm]
77 | GO:0010270 | 0.0230252638312347 | photosystem II oxygen evolving complex assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form the oxygen evolving complex (OEC) of photosystem II on a thylakoid membrane. The OEC protects the calcium-4 manganese-5 oxide cluster which is bound to the D1 and CP43 proteins. The exact protein composition of the OEC varies between cyanobacteria and plants, and in plants consists of three extrinsic nuclear-encoded polypeptides: PsbO, PsbP and PsbQ. [GOC:aa, PMID:16282331]
77 | GO:0010602 | 0.0230252638312347 | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | biological_process | Regulation of the chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene ([NAME]), a fruit-ripening hormone in plants. [PMID:18055613]
77 | GO:0016236 | 0.0230252638312347 | macroautophagy | biological_process | The major inducible pathway for the general turnover of cytoplasmic constituents in eukaryotic cells, it is also responsible for the degradation of active cytoplasmic enzymes and organelles during nutrient starvation. Macroautophagy involves the formation of double-membrane-bounded autophagosomes which enclose the cytoplasmic constituent targeted for degradation in a membrane-bounded structure, which then fuse with the lysosome (or vacuole) releasing a single-membrane-bounded autophagic bodies which are then degraded within the lysosome (or vacuole). Though once thought to be a purely non-selective process, it appears that some types of macroautophagy, e.g. macropexophagy, macromitophagy, may involve selective targeting of the targets to be degraded. [PMID:11099404, PMID:12914914, PMID:15798367, PMID:16973210, PMID:9412464]
77 | GO:0016574 | 0.0230252638312347 | histone ubiquitination | biological_process | The modification of histones by addition of ubiquitin groups. [GOC:ai]
77 | GO:0019294 | 0.0230252638312347 | keto-3-deoxy-D-manno-octulosonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria. [CHEBI:32817, ISBN:[PHONE]]
77 | GO:0033523 | 0.0230252638312347 | histone H2B ubiquitination | biological_process | The modification of histone H2B by addition of ubiquitin groups. [GOC:mah]
77 | GO:0043153 | 0.0230252638312347 | entrainment of circadian clock by photoperiod | biological_process | The synchronization of a circadian rhythm to photoperiod, the intermittent cycle of light (day) and dark (night). [GOC:jl]
77 | GO:0043270 | 0.0230252638312347 | positive regulation of ion transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
77 | GO:0046131 | 0.0230252638312347 | pyrimidine ribonucleoside metabolic process | biological_process | The chemical reactions and pathways involving any ribonucleoside, a nucleoside in which pyrimidine base is linked to a ribose (beta-D-ribofuranose) molecule. [GOC:ai]
77 | GO:0046339 | 0.0230252638312347 | [NAME] process | biological_process | The chemical reactions and pathways involving diacylglycerol, a glycerol molecule substituted on the 1 and 2 hydroxyl groups with long chain fatty acyl residues. DAG is a normal intermediate in the biosynthesis of phosphatidyl phospholipids and is released from them by phospholipase C activity. DAG from phosphatidyl inositol polyphosphates is important in signal transduction. [CHEBI:18035, GOC:curators]
77 | GO:0046400 | 0.0230252638312347 | keto-3-deoxy-D-manno-octulosonic acid metabolic process | biological_process | The chemical reactions and pathways involving keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria. [CHEBI:32817, GOC:ai, ISBN:[PHONE]]
77 | GO:0051924 | 0.0230252638312347 | regulation of calcium ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
77 | GO:0051928 | 0.0230252638312347 | positive regulation of calcium ion transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
77 | GO:0080178 | 0.0230252638312347 | 5-carbamoylmethyluridine metabolic process | biological_process | The chemical reactions and pathways involving 5-carbamoylmethyluridine. [GOC:tb]
77 | GO:2000072 | 0.0230252638312347 | regulation of defense response to fungus, incompatible interaction | biological_process | Any process that modulates the frequency, rate or extent of defense response to fungus, incompatible interaction. [GOC:obol]
77 | GO:0006891 | 0.0282102691912115 | intra-Golgi vesicle-mediated transport | biological_process | The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). [ISBN:[PHONE]]
77 | GO:0006914 | 0.0282102691912115 | autophagy | biological_process | The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. [ISBN:[PHONE], PMID:11099404, PMID:9412464]
77 | GO:0008284 | 0.0282102691912115 | positive regulation of cell proliferation | biological_process | Any process that activates or increases the rate or extent of cell proliferation. [GOC:go_curators]
77 | GO:0009734 | 0.0364374406055882 | auxin mediated signaling pathway | biological_process | The series of molecular signals generated in response to detection of auxin. [GOC:mah, GOC:sm]
77 | GO:0009408 | 0.0381898776224625 | response to heat | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr]
77 | GO:0006397 | 0.0393418016016563 | mRNA processing | biological_process | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. [GOC:mah]
77 | GO:0048581 | 0.0425323585674998 | negative regulation of post-embryonic development | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. [GOC:jid]
77 | GO:0016192 | 0.0428842804720201 | vesicle-mediated transport | biological_process | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. [GOC:ai, GOC:mah, ISBN:08789310662000]
77 | GO:0000412 | 0.0455239623771603 | histone peptidyl-prolyl isomerization | biological_process | The modification of a histone by cis-trans isomerization of a proline residue. [GOC:krc]
77 | GO:0009303 | 0.0455239623771603 | rRNA transcription | biological_process | The synthesis of ribosomal RNA (rRNA), any RNA that forms part of the ribosomal structure, from a DNA template. [GOC:jl, ISBN:[PHONE]]
77 | GO:0009650 | 0.0455239623771603 | UV protection | biological_process | Any process in which an organism or cell protects itself from ultraviolet radiation (UV), which may also result in resistance to repeated exposure to UV. [GOC:jl, GOC:ml]
77 | GO:0010306 | 0.0455239623771603 | rhamnogalacturonan II biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of rhamnogalacturonan II, a low molecular mass (5 - 10KDa) pectic polysaccharide, conserved in the primary walls of dicotyledenous and monocotyledenous plants and gymnosperms. [PMID:12754267]
77 | GO:0010396 | 0.0455239623771603 | rhamnogalacturonan II metabolic process | biological_process | The chemical reactions and pathways involving rhamnogalacturonan II, a low molecular mass (5-10KDa) pectic polysaccharide. The backbone of RG-II contains at least 8 1,4-linked alpha-D-GalpA residues. [GOC:tair_curators]
77 | GO:0010618 | 0.0455239623771603 | aerenchyma formation | biological_process | The process that gives rise to aerenchyma, parenchyma tissue containing particularly large intercellular spaces of schizogenous or lysigenous origin. This process pertains to the initial formation of a structure from unspecified parts. [PMID:18055613, PO:0005702]
77 | GO:0031538 | 0.0455239623771603 | negative regulation of anthocyanin metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. [GOC:mah]
77 | GO:0032784 | 0.0455239623771603 | regulation of DNA-dependent transcription, elongation | biological_process | Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent [NAME] polymerase. [GOC:mah, GOC:txnOH]
77 | GO:0045694 | 0.0455239623771603 | regulation of embryo sac egg cell differentiation | biological_process | Any process that modulates the frequency, rate or extent of embryo sac egg cell differentiation. [GOC:go_curators, GOC:mtg_plant]
77 | GO:0048530 | 0.0455239623771603 | fruit morphogenesis | biological_process | The process in which the anatomical structures of a fruit are generated and organized. A fruit is a reproductive body of a seed plant. [GOC:sm]
77 | GO:0048832 | 0.0455239623771603 | specification of organ number | biological_process | The regionalization process that modulates the quantity of a particular type of organ. [GOC:dph, GOC:isa_complete, GOC:tb]
77 | GO:0048833 | 0.0455239623771603 | specification of floral organ number | biological_process | Any process that modulates the number of floral organs formed in a floral whorl. [GOC:tb]
77 | GO:0080158 | 0.0455239623771603 | chloroplast ribulose bisphosphate carboxylase complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a chloroplast ribulose bisphosphate carboxylase (RubisCO) complex. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex. [PMID:20561259]
77 | GO:1900150 | 0.0455239623771603 | regulation of defense response to fungus | biological_process | Any process that modulates the frequency, rate or extent of defense response to fungus. [GOC:dhl, GOC:TermGenie, PMID:22242006]
77 | GO:1901259 | 0.0455239623771603 | chloroplast rRNA processing | biological_process | Any rRNA processing that takes place in chloroplast. [GOC:TermGenie]
77 | GO:0043687 | 0.0457595243601294 | post-translational protein modification | biological_process | The process of covalently altering one or more amino acids in a protein after the protein has been completely translated and released from the ribosome. [GOC:jsg]
77 | GO:0009639 | 0.0469637128495726 | response to red or far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:ai, GOC:mtg_far_red]
77 | GO:0051241 | 0.0491046737749598 | negative regulation of multicellular organismal process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of an organismal process, the processes pertinent to the function of an organism above the cellular level; includes the integrated processes of tissues and organs. [GOC:ai]
77 | GO:0071365 | 0.0491046737749598 | cellular response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:mah]
78 | GO:1900425 | 0.00239846498241724 | negative regulation of defense response to bacterium | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of defense response to bacterium. [GOC:TermGenie, PMID:22346749]
78 | GO:1901485 | 0.00239846498241724 | positive regulation of transcription factor catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of transcription factor catabolic process. [GOC:al, GOC:TermGenie, GOC:vw, PMID:22833559]
78 | GO:0009830 | 0.00479155998085135 | cell wall modification involved in abscission | biological_process | A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. [GOC:dph, GOC:lr, GOC:sdb_2009, GOC:tb]
78 | GO:0010200 | 0.0286697650603186 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
78 | GO:0010243 | 0.0330723516074995 | response to organic nitrogen | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. An organic nitrogen compound is formally a compound containing at least one carbon-nitrogen bond. [CHEBI:35352, PMID:9869419]
78 | GO:0006863 | 0.0354181778005333 | purine nucleobase transport | biological_process | The directed movement of purine bases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:26386, ISBN:[PHONE]]
78 | GO:0015851 | 0.0377372557510147 | nucleobase transport | biological_process | The directed movement of a nucleobase, any nitrogenous base that is a constituent of a nucleoside, nucleotide, or nucleic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [ISBN:[PHONE]]
78 | GO:0043562 | 0.0377372557510147 | cellular response to nitrogen levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of inorganic nitrogen. [GOC:jl]
79 | GO:0007568 | 0.000113156297517042 | aging | biological_process | A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death (GO:0016265) and may succeed developmental maturation (GO:0021700). [GOC:PO_curators]
79 | GO:0043562 | 0.000399045672816211 | cellular response to nitrogen levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of inorganic nitrogen. [GOC:jl]
79 | GO:0009407 | 0.000408097264743964 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of toxin, a poisonous compound (typically a protein) that is produced by cells or organisms and that can cause disease when introduced into the body or tissues of an organism. [GOC:go_curators]
79 | GO:0006388 | 0.00191877198592891 | tRNA splicing, via endonucleolytic cleavage and ligation | biological_process | Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. [GOC:krc, ISBN:[PHONE], PMID:9582290]
79 | GO:0034484 | 0.00191877198592891 | raffinose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. [CHEBI:16634, GOC:mah]
79 | GO:0010583 | 0.00291758612691873 | response to cyclopentenone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. [PMID:18334669]
79 | GO:0009830 | 0.00383416855335348 | cell wall modification involved in abscission | biological_process | A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. [GOC:dph, GOC:lr, GOC:sdb_2009, GOC:tb]
79 | GO:0015976 | 0.00383416855335348 | carbon utilization | biological_process | A series of processes that forms an integrated mechanism by which a cell or an organism detects the depletion of primary carbon sources and then activates genes to scavenge the last traces of the primary carbon source and to transport and metabolize alternative carbon sources such as carbon dioxide or carbonic acid. The utilization process begins when the cell or organism detects carbon levels, includes the activation of genes whose products detect, transport or metabolize carbon-containing substances, and ends when carbon is incorporated into the cell or organism's metabolism. [GOC:mah, GOC:mlg]
79 | GO:0009970 | 0.0057461951012787 | cellular response to sulfate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate. [GOC:sm]
79 | GO:0009750 | 0.006762617811037 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
79 | GO:0006979 | 0.00824174609586347 | response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731]
79 | GO:0006635 | 0.0100528765369568 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
79 | GO:0019395 | 0.0100528765369568 | fatty acid oxidation | biological_process | The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [ISBN:[PHONE], MetaCyc:FAO-PWY]
79 | GO:0034440 | 0.0110296730033027 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
79 | GO:0009062 | 0.0136486355497653 | fatty acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:go_curators]
79 | GO:0072329 | 0.0139241920232652 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
79 | GO:0009744 | 0.0142021969037134 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
79 | GO:0030258 | 0.0142021969037134 | lipid modification | biological_process | The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid. [GOC:mah]
79 | GO:0034285 | 0.0142021969037134 | response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:sart]
79 | GO:0045454 | 0.0152559659667781 | cell redox homeostasis | biological_process | Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]
79 | GO:0044242 | 0.0159211539635794 | cellular lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells. [GOC:jl]
79 | GO:0016042 | 0.0162160537221928 | lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators]
79 | GO:0006995 | 0.0209217320929323 | cellular response to nitrogen starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. [GOC:jl]
79 | GO:0016054 | 0.0388159478149123 | organic acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of organic acids, any acidic compound containing carbon in covalent linkage. [ISBN:[PHONE]]
79 | GO:0046395 | 0.0388159478149123 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups. [ISBN:[PHONE]]
79 | GO:0044282 | 0.0418562274565048 | small molecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:vw]
79 | GO:0044712 | 0.0418562274565048 | single-organism catabolic process | biological_process | A catabolic process - chemical reactions and pathways resulting in the breakdown of substances - which involves a single organism. [GOC:jl]
79 | GO:0010150 | 0.0469689938616643 | leaf senescence | biological_process | The process that occurs in a leaf near the end of its active life that is associated with the dismantling of cell components and membranes, loss of functional chloroplasts, and an overall decline in metabolism. [ISBN:[PHONE]]
79 | GO:0006631 | 0.0486698482822711 | fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:[PHONE]]
80 | GO:0015810 | 0.00351774864087956 | aspartate transport | biological_process | The directed movement of aspartate, the anion of aspartic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE]]
80 | GO:0015827 | 0.00351774864087956 | tryptophan transport | biological_process | The directed movement of tryptophan, 2-amino-3-(1H-indol-3-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
80 | GO:0019305 | 0.00351774864087956 | dTDP-rhamnose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of dTDP-rhamnose, a substance composed of rhamnose in glycosidic linkage with deoxyribosylthymine diphosphate. [GOC:ai]
80 | GO:0050832 | 0.00532158435517424 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
80 | GO:0034976 | 0.0114465895575573 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
80 | GO:0009831 | 0.0140002618306566 | plant-type cell wall modification involved in multidimensional cell growth | biological_process | The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
80 | GO:0009627 | 0.0162743460040415 | systemic acquired resistance | biological_process | The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. [GOC:lr, ISBN:052143641]
80 | GO:0030968 | 0.0173365507304579 | endoplasmic reticulum unfolded protein response | biological_process | The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation. [GOC:mah, PMID:12042763]
80 | GO:0042547 | 0.0174709809090855 | cell wall modification involved in multidimensional cell growth | biological_process | The series of events resulting in chemical or structural changes to existing cell walls and contribute to multidimensional cell growth. [GOC:dph, GOC:jl, GOC:tb]
80 | GO:0006986 | 0.0184852307292964 | response to unfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:jl]
80 | GO:0034620 | 0.0184852307292964 | cellular response to unfolded protein | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:mah]
80 | GO:0035967 | 0.0184852307292964 | cellular response to topologically incorrect protein | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure. [GOC:bf]
80 | GO:0006984 | 0.0202673807184593 | ER-nucleus signaling pathway | biological_process | Any series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation. [GOC:mah]
80 | GO:0009828 | 0.0243774659541835 | plant-type cell wall loosening | biological_process | The series of events causing chemical and structural alterations of an existing cellulose and pectin-containing cell wall that results in greater extensibility of the wall. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
80 | GO:0071281 | 0.0243774659541835 | cellular response to iron ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:mah]
80 | GO:0009814 | 0.0277881028354221 | defense response, incompatible interaction | biological_process | A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease. [GOC:lr]
80 | GO:0006949 | 0.0312375951835021 | syncytium formation | biological_process | The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division. [ISBN:[PHONE]]
80 | GO:0042732 | 0.0346503690675527 | D-xylose metabolic process | biological_process | The chemical reactions and pathways involving D-xylose, a naturally occurring plant polysaccharide. [ISBN:[PHONE]]
80 | GO:0071248 | 0.0414415197889059 | cellular response to metal ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. [GOC:mah]
80 | GO:0031348 | 0.0441399847946188 | negative regulation of defense response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. [GOC:mah]
80 | GO:0019321 | 0.0481870523598263 | pentose metabolic process | biological_process | The chemical reactions and pathways involving a pentose, any monosaccharide with a chain of five carbon atoms in the molecule. [ISBN:[PHONE]]
80 | GO:0071241 | 0.0481870523598263 | cellular response to inorganic substance | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. [GOC:mah]
81 | GO:0009269 | 0.002393251060643 | response to desiccation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. [GOC:jl]
81 | GO:1900425 | 0.00463703229934528 | negative regulation of defense response to bacterium | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of defense response to bacterium. [GOC:TermGenie, PMID:22346749]
81 | GO:1901485 | 0.00463703229934528 | positive regulation of transcription factor catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of transcription factor catabolic process. [GOC:al, GOC:TermGenie, GOC:vw, PMID:22833559]
81 | GO:0010500 | 0.00925330066063572 | transmitting tissue development | biological_process | The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary. [PMID:17855426]
81 | GO:0048462 | 0.00925330066063572 | carpel formation | biological_process | The process that gives rise to the carpel. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
81 | GO:0009970 | 0.0138488947554961 | cellular response to sulfate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate. [GOC:sm]
81 | GO:0010507 | 0.0138488947554961 | negative regulation of autophagy | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
81 | GO:0031330 | 0.0138488947554961 | negative regulation of cellular catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. [GOC:mah]
81 | GO:0006677 | 0.0184239038824925 | glycosylceramide metabolic process | biological_process | The chemical reactions and pathways involving glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai, ISBN:[PHONE]]
81 | GO:0006687 | 0.0184239038824925 | glycosphingolipid metabolic process | biological_process | The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
81 | GO:0009895 | 0.0184239038824925 | negative regulation of catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances. [GOC:go_curators]
81 | GO:0010506 | 0.0184239038824925 | regulation of autophagy | biological_process | Any process that modulates the frequency, rate or extent of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
81 | GO:0016137 | 0.0184239038824925 | glycoside metabolic process | biological_process | The chemical reactions and pathways involving glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [ISBN:[PHONE]]
81 | GO:0016139 | 0.0184239038824925 | glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [GOC:go_curators]
81 | GO:0019377 | 0.0184239038824925 | glycolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
81 | GO:0046477 | 0.0184239038824925 | glycosylceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai]
81 | GO:0046479 | 0.0184239038824925 | glycosphingolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
81 | GO:0046514 | 0.0184239038824925 | ceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid. [GOC:ai]
81 | [NAME] | 0.0229784169684367 | ceramide metabolic process | biological_process | The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. [ISBN:[PHONE]]
81 | GO:0030149 | 0.0229784169684367 | sphingolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [GOC:mah, ISBN:[PHONE]]
81 | GO:0046466 | 0.0229784169684367 | membrane lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai]
81 | GO:0045454 | 0.0365198637105445 | cell redox homeostasis | biological_process | Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]
81 | GO:0009750 | 0.0370875143983604 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
81 | GO:0033993 | 0.0498660149105674 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
81 | GO:0006995 | 0.0498800121076406 | cellular response to nitrogen starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. [GOC:jl]
82 | GO:0009269 | 0.00150476754719105 | response to desiccation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a desiccation stimulus, extreme dryness resulting from the prolonged deprivation of water. [GOC:jl]
82 | GO:0009737 | 0.00157996103240042 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
82 | GO:0006388 | 0.00367764630638155 | tRNA splicing, via endonucleolytic cleavage and ligation | biological_process | Splicing of tRNA substrates via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. [GOC:krc, ISBN:[PHONE], PMID:9582290]
82 | GO:0035865 | 0.00367764630638155 | cellular response to potassium ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus. [GOC:yaf]
82 | GO:0080055 | 0.00367764630638155 | low affinity nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. In low affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. [PMID:19050168]
82 | GO:0009744 | 0.00511459519962528 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
82 | GO:0010286 | 0.00675757440146166 | heat acclimation | biological_process | Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators]
82 | GO:0045487 | 0.0073423535085035 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [GOC:go_curators]
82 | GO:0010507 | 0.0109941650679551 | negative regulation of autophagy | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
82 | GO:0031330 | 0.0109941650679551 | negative regulation of cellular catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. [GOC:mah]
82 | GO:0009895 | 0.0146331243071247 | negative regulation of catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances. [GOC:go_curators]
82 | GO:0010506 | 0.0146331243071247 | regulation of autophagy | biological_process | Any process that modulates the frequency, rate or extent of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
82 | GO:0007568 | 0.0153449180073418 | aging | biological_process | A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death (GO:0016265) and may succeed developmental maturation (GO:0021700). [GOC:PO_curators]
82 | GO:0042538 | 0.0188757268780171 | hyperosmotic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
82 | GO:0009750 | 0.0240628683037578 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
82 | GO:0046777 | 0.0240628683037578 | protein autophosphorylation | biological_process | The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. [ISBN:[PHONE]]
82 | GO:0042126 | 0.025473319249833 | nitrate metabolic process | biological_process | The chemical reactions and pathways involving nitrates, inorganic or organic salts and esters of nitric acid. [GOC:jl]
82 | GO:0042128 | 0.025473319249833 | nitrate assimilation | biological_process | The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899]
82 | GO:2001057 | 0.025473319249833 | reactive nitrogen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive nitrogen species. [GOC:obol]
82 | GO:0071941 | 0.029061299665654 | nitrogen cycle metabolic process | biological_process | A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization. [GOC:mah, PMID:16675690, Wikipedia:Nitrogen_cycle]
82 | GO:0009746 | 0.0328042467520823 | response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:jl]
82 | GO:0034284 | 0.0335819149777883 | response to monosaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. [GOC:mah]
83 | GO:0009723 | 3.82456313998126e-05 | response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:jl]
83 | GO:0009414 | 0.000373796738810595 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
83 | [NAME] | 0.000981465904271504 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
83 | GO:0042538 | 0.00546011719091259 | hyperosmotic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
83 | GO:0010480 | 0.00623600895428079 | microsporocyte differentiation | biological_process | The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell. [CL:0000248, PMID:16751349]
83 | GO:0012502 | 0.00623600895428079 | induction of programmed cell death | biological_process | A process which directly activates any of the steps required for programmed cell death. [GOC:lr]
83 | GO:0015810 | 0.00623600895428079 | aspartate transport | biological_process | The directed movement of aspartate, the anion of aspartic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE]]
83 | GO:0015827 | 0.00623600895428079 | tryptophan transport | biological_process | The directed movement of tryptophan, 2-amino-3-(1H-indol-3-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
83 | GO:0032107 | 0.00623600895428079 | regulation of response to nutrient levels | biological_process | Any process that modulates the frequency, rate or extent of a response to nutrient levels. [GOC:mah]
83 | GO:0033473 | 0.00623600895428079 | indoleacetic acid conjugate metabolic process | biological_process | The chemical reactions and pathways involving any indole-3-acetic acid conjugate, a form of indoleacetic acid covalently bound to another molecule. [GOC:mah]
83 | GO:0035865 | 0.00623600895428079 | cellular response to potassium ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus. [GOC:yaf]
83 | GO:0043620 | 0.00623600895428079 | regulation of DNA-dependent transcription in response to stress | biological_process | Modulation of the frequency, rate or extent of transcription from a DNA template as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:jl, GOC:txnOH]
83 | GO:0080055 | 0.00623600895428079 | low affinity nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. In low affinity transport the transporter is able to bind the solute only if it is present at very high concentrations. [PMID:19050168]
83 | GO:0015804 | 0.0103848635842511 | neutral amino acid transport | biological_process | The directed movement of neutral amino acids, amino acids with no net charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
83 | GO:0009751 | 0.0121515950640764 | response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:jl]
83 | GO:0010500 | 0.0124341211645097 | transmitting tissue development | biological_process | The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary. [PMID:17855426]
83 | GO:0048445 | 0.0124341211645097 | carpel morphogenesis | biological_process | The process in which the anatomical structures of the carpel are generated and organized. [GOC:go_curators]
83 | GO:0048462 | 0.0124341211645097 | carpel formation | biological_process | The process that gives rise to the carpel. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
83 | GO:0009753 | 0.0124385102505647 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
83 | GO:0009862 | 0.0141420017278419 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
83 | GO:0006857 | 0.0147661372969215 | oligopeptide transport | biological_process | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:[PHONE]]
83 | GO:0015833 | 0.0157228851228911 | peptide transport | biological_process | The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
83 | GO:0009737 | 0.0163632409108138 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
83 | GO:0032502 | 0.0169080495783294 | developmental process | biological_process | A biological process whose specific outcome is the progression of an integrated living unit: an anatomical structure (which may be a subcellular structure, cell, tissue, or organ), or organism over time from an initial condition to a later condition. [GOC:isa_complete]
83 | GO:0009738 | 0.0186693523111719 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
83 | GO:0019374 | 0.0187478359110954 | galactolipid metabolic process | biological_process | The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
83 | GO:0019375 | 0.0187478359110954 | galactolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
83 | GO:0042886 | 0.0198065851219543 | amide transport | biological_process | The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl, ISBN:[PHONE]]
83 | GO:0009247 | 0.0208899897111619 | glycolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
83 | GO:1901701 | 0.0224234270221187 | cellular response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
83 | GO:0044707 | 0.0234207209686412 | single-multicellular organism process | biological_process | A biological process occurring within a single, multicellular organism. [GOC:jl]
83 | GO:0071215 | 0.0245430895092108 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
83 | GO:0006821 | 0.0247175511693969 | chloride transport | biological_process | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
83 | GO:0006935 | 0.0247175511693969 | chemotaxis | biological_process | The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). [ISBN:[PHONE]]
83 | GO:0010183 | 0.0247175511693969 | [NAME] | biological_process | The process in which the growth of pollen tube is directed towards the female gametophyte. [GOC:lr]
83 | GO:0042330 | 0.0247175511693969 | taxis | biological_process | The directed movement of a motile cell or organism in response to an external stimulus. [GOC:jl, ISBN:[PHONE]]
83 | GO:0050918 | 0.0247175511693969 | positive chemotaxis | biological_process | The directed movement of a motile cell or organism towards a higher concentration of a chemical. [GOC:ai, GOC:bf, GOC:isa_complete]
83 | GO:0006664 | 0.0254635682845827 | [NAME] process | biological_process | The chemical reactions and pathways involving glycolipids, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar group acylated by one or more fatty acids and the glycerol group may be absent. [CHEBI:33563, ISBN:[PHONE]]
83 | GO:0097305 | 0.0257455700830956 | response to alcohol | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
83 | GO:0048528 | 0.0266653305525876 | post-embryonic root development | biological_process | The process whose specific outcome is the progression of the post-embryonic root over time, from its formation to the mature structure. [GOC:tb]
83 | GO:0032501 | 0.028291136538731 | multicellular organismal process | biological_process | Any biological process, occurring at the level of a multicellular organism, pertinent to its function. [GOC:curators, GOC:dph, GOC:isa_complete, GOC:tb]
83 | GO:0009954 | 0.0308033136501233 | proximal/distal pattern formation | biological_process | The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end). [GOC:dph, GOC:go_curators, GOC:isa_complete]
83 | GO:0010148 | 0.0308033136501233 | transpiration | biological_process | Release of water by the plant into the air as water vapor mainly through leaves. [GOC:sm, ISBN:[PHONE]]
83 | GO:0032957 | 0.0308033136501233 | inositol trisphosphate metabolic process | biological_process | The chemical reactions and pathways involving myo-inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with three phosphate groups attached. [CHEBI:24540, CHEBI:24848, GOC:mah]
83 | GO:0080092 | 0.0308033136501233 | regulation of pollen tube growth | biological_process | Any process that modulates the frequency, rate or extent of pollen tube growth. [PMID:19208902]
83 | GO:0097306 | 0.0357950271112917 | cellular response to alcohol | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
83 | GO:0009863 | 0.0365735398162001 | salicylic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by salicylic acid. [GOC:jy]
83 | GO:0071446 | 0.0365735398162001 | cellular response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:mah]
83 | GO:0010769 | 0.0368520687736863 | regulation of cell morphogenesis involved in differentiation | biological_process | Any process that modulates the frequency, rate or extent of cell morphogenesis contributing to cell differentiation. Cell morphogenesis involved in differentiation is the change in form (cell shape and size) that occurs when relatively unspecialized cells acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. [GOC:dph, GOC:tb]
83 | GO:0046838 | 0.0368520687736863 | phosphorylated carbohydrate dephosphorylation | biological_process | The process of removing a phosphate group from a phosphorylated carbohydrate, any organic compound based on the general formula Cx(H2O)y with a phosphate group attached to it. [ISBN:[PHONE]]
83 | GO:0046855 | 0.0368520687736863 | inositol phosphate dephosphorylation | biological_process | The process of removing a phosphate group from any mono- or polyphosphorylated inositol. [ISBN:[PHONE]]
83 | GO:0071545 | 0.0368520687736863 | inositol phosphate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of an inositol phosphate, 1,2,3,4,5,6-cyclohexanehexol, with one or more phosphate groups attached. [CHEBI:24848, [NAME], GOC:mah]
83 | GO:0009611 | 0.0381568770723205 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
83 | GO:0033993 | 0.0390083227150954 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
83 | GO:0046467 | 0.0398809872218841 | membrane lipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai]
83 | GO:0007275 | 0.0407974797175802 | multicellular organismal development | biological_process | The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult). [GOC:dph, GOC:ems, GOC:isa_complete, GOC:tb]
83 | GO:0007568 | 0.0413157198050775 | aging | biological_process | A developmental process that is a deterioration and loss of function over time. Aging includes loss of functions such as resistance to disease, homeostasis, and fertility, as well as wear and tear. Aging includes cellular senescence, but is more inclusive. May precede death (GO:0016265) and may succeed developmental maturation (GO:0021700). [GOC:PO_curators]
83 | GO:0022603 | 0.0413157198050775 | regulation of anatomical structure morphogenesis | biological_process | Any process that modulates the frequency, rate or extent of anatomical structure morphogenesis. [GOC:mah]
83 | GO:0042126 | 0.0428640356940839 | nitrate metabolic process | biological_process | The chemical reactions and pathways involving nitrates, inorganic or organic salts and esters of nitric acid. [GOC:jl]
83 | GO:0042128 | 0.0428640356940839 | nitrate assimilation | biological_process | The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899]
83 | GO:0060284 | 0.0428640356940839 | regulation of cell development | biological_process | Any process that modulates the rate, frequency or extent of the progression of the cell over time, from its formation to the mature structure. Cell development does not include the steps involved in committing a cell to a specific fate. [GOC:dph, GOC:tb]
83 | GO:2001057 | 0.0428640356940839 | reactive nitrogen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive nitrogen species. [GOC:obol]
83 | GO:0009695 | 0.0442431154355184 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
83 | GO:0042743 | 0.046594782627339 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
83 | GO:0010227 | 0.0488394323017252 | floral organ abscission | biological_process | The controlled shedding of floral organs. [GOC:PO_curators, PMID:12972671, PO:0025395]
83 | GO:0040011 | 0.0488394323017252 | locomotion | biological_process | Self-propelled movement of a cell or organism from one location to another. [GOC:dgh]
83 | GO:0071941 | 0.0488394323017252 | nitrogen cycle metabolic process | biological_process | A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization. [GOC:mah, PMID:16675690, Wikipedia:Nitrogen_cycle]
84 | GO:0045487 | 1.41153864308953e-05 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of gibberellin. Gibberellins are a class of highly modified terpenes that function as plant growth regulators. [GOC:go_curators]
84 | GO:0052544 | 0.000499872113549866 | defense response by callose deposition in cell wall | biological_process | Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
84 | GO:0009759 | 0.00383754397185152 | indole glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [GOC:ai]
84 | GO:0035865 | 0.00383754397185152 | cellular response to potassium ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a potassium ion stimulus. [GOC:yaf]
84 | GO:0006750 | 0.00766097255725509 | glutathione biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, GOC:al, GOC:pde, ISBN:[PHONE]]
84 | GO:0010500 | 0.00766097255725509 | transmitting tissue development | biological_process | The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary. [PMID:17855426]
84 | GO:0048462 | 0.00766097255725509 | carpel formation | biological_process | The process that gives rise to the carpel. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
84 | GO:1901700 | 0.00999765132473371 | response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
84 | GO:0009611 | 0.0103924468085868 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
84 | GO:0009725 | 0.0108943669922555 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
84 | GO:0009700 | 0.0114703354265344 | indole phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:sm, ISBN:[PHONE]]
84 | GO:0046217 | 0.0114703354265344 | indole phytoalexin metabolic process | biological_process | The chemical reactions and pathways involving indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:ai]
84 | GO:0048830 | 0.0114703354265344 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
84 | GO:0052314 | 0.0114703354265344 | [NAME] process | biological_process | The chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
84 | GO:0052315 | 0.0114703354265344 | phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
84 | GO:0009682 | 0.0152656820830873 | induced systemic resistance | biological_process | A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. [PMID:10234273]
84 | GO:0018130 | 0.0173423975783802 | heterocycle biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings). [ISBN:[PHONE]]
84 | [NAME] | 0.017509190158098 | response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:sm]
84 | GO:0009753 | 0.017615537196875 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
84 | GO:0006855 | 0.0190470618639239 | drug transmembrane transport | biological_process | The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf]
84 | GO:0010114 | 0.0198105374468981 | response to red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm]
84 | GO:0042538 | 0.0204704037308596 | hyperosmotic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
84 | GO:0009414 | 0.0213408650593042 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
84 | GO:0009415 | 0.0216995586293288 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
84 | GO:0009694 | 0.0218176398824352 | [NAME] process | biological_process | The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid. [ISBN:[PHONE]]
84 | GO:0009641 | 0.022814523940146 | [NAME] | biological_process | Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome. [Wikipedia:Shade_avoidance]
84 | GO:0019438 | 0.0242898171918363 | aromatic compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic compounds, any substance containing an aromatic carbon ring. [GOC:ai]
84 | GO:0010468 | 0.024919998635135 | regulation of gene expression | biological_process | Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
84 | GO:0031326 | 0.0255563571517032 | regulation of cellular biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
84 | GO:0000096 | 0.0258663659855677 | sulfur amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids containing sulfur, comprising cysteine, homocysteine, methionine and selenocysteine. [GOC:ai]
84 | GO:0009889 | 0.0262041881436413 | regulation of biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
84 | GO:0000162 | 0.0265681173182736 | tryptophan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:[PHONE], MetaCyc:TRPSYN-PWY]
84 | GO:0010380 | 0.0265681173182736 | regulation of chlorophyll biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [PMID:17291312]
84 | GO:0042126 | 0.0265681173182736 | nitrate metabolic process | biological_process | The chemical reactions and pathways involving nitrates, inorganic or organic salts and esters of nitric acid. [GOC:jl]
84 | GO:0042128 | 0.0265681173182736 | nitrate assimilation | biological_process | The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances. [GOC:das, GOC:mah, PMID:10542156, PMID:8122899]
84 | GO:0046219 | 0.0265681173182736 | indolalkylamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
84 | GO:2001057 | 0.0265681173182736 | reactive nitrogen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive nitrogen species. [GOC:obol]
84 | GO:0071941 | 0.0303078908390878 | nitrogen cycle metabolic process | biological_process | A nitrogen compound metabolic process that contributes to the nitrogen cycle. The nitrogen cycle is a series of metabolic pathways by which nitrogen is converted between various forms and redox states; it encompasses pathways in which nitrogen is acted upon directly, such as nitrification, denitrification, nitrogen fixation, and mineralization. [GOC:mah, PMID:16675690, Wikipedia:Nitrogen_cycle]
84 | GO:0090056 | 0.0303078908390878 | regulation of chlorophyll metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving chlorophyll. [GOC:dph, GOC:tb]
84 | GO:1901463 | 0.0303078908390878 | regulation of tetrapyrrole biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of tetrapyrrole biosynthetic process. [GOC:mengo_curators, GOC:TermGenie]
84 | GO:0002213 | 0.0340338931798052 | defense response to insect | biological_process | A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism. [GOC:add]
84 | GO:0010187 | 0.0340338931798052 | negative regulation of seed germination | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of seed germination. [GOC:tb]
84 | GO:1901401 | 0.0340338931798052 | regulation of tetrapyrrole metabolic process | biological_process | Any process that modulates the frequency, rate or extent of tetrapyrrole metabolic process. [GOC:mengo_curators, GOC:TermGenie]
84 | GO:1901607 | 0.0358890873841266 | alpha-amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alpha-amino acid. [GOC:TermGenie]
84 | GO:0015893 | 0.0377461728537251 | drug transport | biological_process | The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
84 | GO:0051193 | 0.0377461728537251 | regulation of cofactor metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a cofactor. [GOC:ai]
84 | GO:1901362 | 0.0388764053159043 | organic cyclic compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of organic cyclic compound. [GOC:TermGenie]
84 | GO:0006355 | 0.0401086379471743 | regulation of transcription, DNA-dependent | biological_process | Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
84 | GO:0019222 | 0.0402238187047347 | regulation of metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
84 | GO:0009651 | 0.0406683188353963 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
84 | GO:0060255 | 0.0412662912390566 | regulation of macromolecule metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
84 | GO:0042493 | 0.0414447782111405 | response to drug | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease. [GOC:jl]
84 | GO:2001141 | 0.0416234679353758 | regulation of RNA biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of RNA biosynthetic process. [GOC:dph]
84 | GO:0051252 | 0.0423948157430612 | regulation of RNA metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
84 | GO:0009628 | 0.0428716587169172 | response to abiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus. [GOC:hb]
84 | GO:0009059 | 0.0433422569029509 | macromolecule biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [CHEBI:33694, GOC:mah]
84 | GO:0080090 | 0.0437831632257822 | regulation of primary metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism. [PMID:19211694]
84 | GO:0009308 | 0.0460516963535191 | amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
84 | GO:0006094 | 0.0469779147087481 | gluconeogenesis | biological_process | The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol. [MetaCyc:GLUCONEO-PWY]
84 | GO:0006970 | 0.0484141296167689 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
84 | [NAME] | 0.0488011585641686 | amine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
84 | GO:0009816 | 0.0488011585641686 | defense response to bacterium, incompatible interaction | biological_process | A response of an organism to a bacterium that prevents the occurrence or spread of disease. [GOC:lr]
84 | GO:0042401 | 0.0488011585641686 | cellular biogenic amine biosynthetic process | biological_process | The chemical reactions and pathways occurring at the level of individual cells resulting in the formation of any of a group of naturally occurring, biologically active amines, such as norepinephrine, histamine, and serotonin, many of which act as neurotransmitters. [GOC:jl, ISBN:[PHONE]]
84 | GO:0019319 | 0.0488511342611785 | hexose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexose, any monosaccharide with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
85 | GO:0009867 | 0.0002519994047284 | [NAME] mediated signaling pathway | biological_process | A series of molecular signals mediated by [NAME]. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
85 | GO:0031348 | 0.00029236683249016 | negative regulation of defense response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. [GOC:mah]
85 | GO:0050832 | 0.0004056164093121 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
85 | GO:0009641 | 0.000559538031727779 | [NAME] | biological_process | Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome. [Wikipedia:Shade_avoidance]
85 | GO:0009861 | 0.000559538031727779 | [NAME] and ethylene-dependent systemic resistance | biological_process | The jasmonic acid and ethylene ([NAME]) dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen. [GOC:jy, PMID:10234273]
85 | GO:0010193 | 0.00328915150510463 | response to ozone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a ozone stimulus. [GOC:sm]
85 | GO:0010200 | 0.00494779459217404 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
85 | GO:0051606 | 0.00546011719091259 | detection of stimulus | biological_process | The series of events in which a stimulus is received by a cell or organism and converted into a molecular signal. [GOC:add, GOC:ai, GOC:dph, GOC:mah]
85 | GO:0010218 | 0.00572801277835507 | response to far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb]
85 | GO:0043069 | 0.00572801277835507 | negative regulation of programmed cell death | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
85 | GO:0010046 | 0.00623600895428079 | response to mycotoxin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycotoxin stimulus. A mycotoxin is a toxic chemical substance produced by fungi. [GOC:sm]
85 | GO:0010508 | 0.00623600895428079 | positive regulation of autophagy | biological_process | Any process that activates, maintains or increases the rate of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
85 | GO:1901684 | 0.00623600895428079 | arsenate ion transmembrane transport | biological_process | The directed movement of arsenate ion across a membrane. [GOC:TermGenie]
85 | GO:0010162 | 0.0081563923168455 | seed dormancy process | biological_process | A dormancy process in which dormancy (sometimes called a dormant state) is induced, maintained or broken in a seed. Seed dormancy is a suspension of most physiological activity and growth in a seed, including the embryo contained therein, that can be reactivated. It often requires special conditions for reactivation, such as specific temperature, scarification, or leaching of inhibitors. [GOC:lr, GOC:PO_curators, ISBN:[PHONE], PO_REF:00009]
85 | GO:0009733 | 0.00857677983033807 | response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:jl]
85 | GO:0045088 | 0.00951583971039746 | regulation of innate immune response | biological_process | Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection. [GOC:ebc]
85 | GO:2000377 | 0.00993949945555687 | regulation of reactive oxygen species metabolic process | biological_process | Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
85 | GO:0000165 | 0.0123577101407843 | MAPK cascade | biological_process | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP [NAME]-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
85 | GO:0007243 | 0.0123577101407843 | intracellular protein kinase cascade | biological_process | A series of reactions in which a signal is passed on to downstream proteins within the cell by sequential protein phosphorylation and activation of the cascade components. [GOC:bf, GOC:jl, GOC:signaling]
85 | GO:0010120 | 0.0124341211645097 | camalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of camalexin, an indole phytoalexin. [GOC:pz]
85 | GO:0015692 | 0.0124341211645097 | lead ion transport | biological_process | The directed movement of lead (Pb) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
85 | GO:0048838 | 0.0124341211645097 | release of seed from dormancy | biological_process | The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release. [GOC:dph, GOC:jid, GOC:tb, ISBN:[PHONE]]
85 | GO:0052317 | 0.0124341211645097 | [NAME] process | biological_process | The chemical reactions and pathways involving camalexin, an indole phytoalexin. [GOC:ai]
85 | GO:0097438 | 0.0124341211645097 | exit from dormancy | biological_process | The dormancy process that results in exit from dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
85 | GO:0009862 | 0.0141420017278419 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
85 | GO:0042742 | 0.0142519549782009 | defense response to bacterium | biological_process | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]
85 | GO:0009627 | 0.015218789469966 | systemic acquired resistance | biological_process | The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. [GOC:lr, ISBN:052143641]
85 | GO:0009414 | 0.0158859981818814 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
85 | GO:0009415 | 0.0162264588183003 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
85 | GO:0009740 | 0.0167056464040321 | gibberellic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of gibberellic acid. [GOC:sm]
85 | GO:0010476 | 0.0167056464040321 | [NAME] mediated signaling pathway | biological_process | The series of molecular signals generated as a consequence of gibberellin stimulus. [PMID:17521411]
85 | GO:0002252 | 0.0170807885866042 | immune effector process | biological_process | Any process of the immune system that can potentially contribute to an immune response. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05, ISBN:[PHONE]]
85 | GO:0071370 | 0.017714077013316 | cellular response to gibberellin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:mah]
85 | GO:0009700 | 0.0185945609077617 | indole phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:sm, ISBN:[PHONE]]
85 | GO:0009864 | 0.0185945609077617 | induced systemic resistance, [NAME] mediated signaling pathway | biological_process | The series of molecular signals mediated by [NAME] involved in induced systemic resistance. [GOC:jy]
85 | GO:0009939 | 0.0185945609077617 | positive regulation of gibberellic acid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity. [GOC:sm]
85 | GO:0009970 | 0.0185945609077617 | cellular response to sulfate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate. [GOC:sm]
85 | GO:0035435 | 0.0185945609077617 | phosphate ion transmembrane transport | biological_process | The directed movement of phosphate across a membrane by means of some agent such as a transporter or pore. [GOC:vw]
85 | GO:0046217 | 0.0185945609077617 | indole phytoalexin metabolic process | biological_process | The chemical reactions and pathways involving indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:ai]
85 | GO:0046864 | 0.0185945609077617 | isoprenoid transport | biological_process | The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [GOC:ai]
85 | GO:0046865 | 0.0185945609077617 | terpenoid transport | biological_process | The directed movement of terpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Terpenoids are a class of compounds characterized by an isoprenoid chemical structure and include derivatives with various functional groups. [GOC:ai]
85 | GO:0052314 | 0.0185945609077617 | [NAME] process | biological_process | The chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
85 | GO:0052315 | 0.0185945609077617 | phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
85 | GO:0070370 | 0.0185945609077617 | cellular heat acclimation | biological_process | Any process that increases heat tolerance of a cell in response to high temperatures. [GOC:jp]
85 | GO:0080168 | 0.0185945609077617 | abscisic acid transport | biological_process | The directed movement of abscisic acid into, out of, within or between cells by means of some external agent such as a transporter or pore. [PMID:20133881]
85 | GO:0009595 | 0.0187478359110954 | detection of biotic stimulus | biological_process | The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal. [GOC:hb]
85 | GO:0010286 | 0.0187478359110954 | heat acclimation | biological_process | Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators]
85 | GO:0071365 | 0.0208899897111619 | cellular response to auxin stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an auxin stimulus. [GOC:mah]
85 | GO:0006677 | 0.0247175511693969 | glycosylceramide metabolic process | biological_process | The chemical reactions and pathways involving glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai, ISBN:[PHONE]]
85 | GO:0006687 | 0.0247175511693969 | glycosphingolipid metabolic process | biological_process | The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
85 | GO:0009682 | 0.0247175511693969 | induced systemic resistance | biological_process | A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. [PMID:10234273]
85 | GO:0016137 | 0.0247175511693969 | glycoside metabolic process | biological_process | The chemical reactions and pathways involving glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [ISBN:[PHONE]]
85 | GO:0016139 | 0.0247175511693969 | glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [GOC:go_curators]
85 | GO:0019377 | 0.0247175511693969 | glycolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
85 | GO:0031146 | 0.0247175511693969 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083]
85 | GO:0046477 | 0.0247175511693969 | glycosylceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai]
85 | GO:0046479 | 0.0247175511693969 | glycosphingolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
85 | GO:0046514 | 0.0247175511693969 | ceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid. [GOC:ai]
85 | GO:0014070 | 0.0264729618752194 | response to organic cyclic compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus. [CHEBI:33832, GOC:ef]
85 | GO:0010583 | 0.029136665805031 | response to cyclopentenone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. [PMID:18334669]
85 | GO:0043900 | 0.0304056130669997 | regulation of multi-organism process | biological_process | Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
85 | [NAME] | 0.0308033136501233 | ceramide metabolic process | biological_process | The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. [ISBN:[PHONE]]
85 | GO:0006855 | 0.0308033136501233 | drug transmembrane transport | biological_process | The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf]
85 | GO:0010252 | 0.0308033136501233 | auxin homeostasis | biological_process | A homeostatic process that maintains an endogenous steady-state concentration of primary auxin, or constant level of auxin in a biological system, by a number of biochemical processes including transport, biosynthesis, catabolism and conjugation. [http://diss-epsilon.slu.se/archive/00000215/]
85 | GO:0010325 | 0.0308033136501233 | raffinose family oligosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization). [GOC:tair_curators]
85 | GO:0030149 | 0.0308033136501233 | sphingolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [GOC:mah, ISBN:[PHONE]]
85 | GO:0046466 | 0.0308033136501233 | membrane lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai]
85 | GO:0048584 | 0.0316963343482008 | positive regulation of response to stimulus | biological_process | Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
85 | GO:0010118 | 0.0330085238701582 | stomatal movement | biological_process | The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata). [GOC:sm]
85 | GO:0009863 | 0.0365735398162001 | salicylic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by salicylic acid. [GOC:jy]
85 | GO:0071446 | 0.0365735398162001 | cellular response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:mah]
85 | GO:0010363 | 0.0373608288579655 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
85 | [NAME] | 0.0389616664946204 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
85 | GO:0080135 | 0.0389616664946204 | regulation of cellular response to stress | biological_process | Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
85 | GO:0033993 | 0.0390083227150954 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
85 | GO:0009617 | 0.0412175611981506 | response to bacterium | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. [GOC:hb]
85 | GO:0009937 | 0.0428640356940839 | regulation of gibberellic acid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of gibberellic acid mediated signaling. [GOC:go_curators]
85 | GO:0015850 | 0.0428640356940839 | organic hydroxy compound transport | biological_process | The directed movement of an organic hydroxy compound (organic alcohol) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. An organic hydroxy compound is an organic compound having at least one hydroxy group attached to a carbon atom. [CHEBI:33822, GOC:ai]
85 | GO:0042743 | 0.046594782627339 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
85 | GO:0009739 | 0.0487748139982383 | response to gibberellin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:jl]
85 | GO:0006521 | 0.0488394323017252 | regulation of cellular amino acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids. [GOC:go_curators]
85 | GO:0033238 | 0.0488394323017252 | regulation of cellular amine metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform amines. [GOC:mah]
85 | GO:0045454 | 0.0488394323017252 | cell redox homeostasis | biological_process | Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]
86 | GO:0010200 | 0.000370087104608212 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
86 | GO:0009651 | 0.00254439348430599 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
86 | GO:0010118 | 0.00710831444368175 | stomatal movement | biological_process | The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata). [GOC:sm]
86 | GO:0005513 | 0.00863447393669136 | detection of calcium ion | biological_process | The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal. [GOC:pg]
86 | GO:0019593 | 0.00863447393669136 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
86 | GO:0033473 | 0.00863447393669136 | indoleacetic acid conjugate metabolic process | biological_process | The chemical reactions and pathways involving any indole-3-acetic acid conjugate, a form of indoleacetic acid covalently bound to another molecule. [GOC:mah]
86 | GO:0090410 | 0.00863447393669136 | malonate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of malonate, the propanedioate ion. [GOC:tb]
86 | GO:0009625 | 0.00915984280438703 | response to insect | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect. [GOC:hb]
86 | GO:0009620 | 0.00963545125916607 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
86 | GO:0009725 | 0.0109482546454596 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
86 | GO:0042752 | 0.0164865555805413 | regulation of circadian rhythm | biological_process | Any process that modulates the frequency, rate or extent of a circadian rhythm. A circadian rhythm is a biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:dph, GOC:jl, GOC:tb]
86 | GO:0000710 | 0.0171957626632454 | meiotic mismatch repair | biological_process | A system for the identification and correction of base-base mismatches, small insertion-deletion loops, and regions of heterology that are present in duplex DNA formed with strands from two recombining molecules. Correction of the mismatch can result in non-Mendelian segregation of alleles following meiosis. [GOC:elh, PMID:10357855]
86 | GO:0006290 | 0.0171957626632454 | pyrimidine dimer repair | biological_process | The repair of UV-induced T-T, C-T and C-C dimers. [ISBN:[PHONE]]
86 | GO:0006971 | 0.0171957626632454 | hypotonic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hypotonic environment, i.e. an environment with a lower concentration of solutes than the organism or cell. [GOC:jl, PMID:12598593]
86 | GO:0009961 | 0.0171957626632454 | response to 1-aminocyclopropane-1-carboxylic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus. [GOC:jl]
86 | GO:0010044 | 0.0171957626632454 | response to aluminum ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. [GOC:sm]
86 | GO:0031998 | 0.0171957626632454 | regulation of fatty acid beta-oxidation | biological_process | Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation. [GOC:mah]
86 | GO:0042539 | 0.0171957626632454 | hypotonic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
86 | GO:0042753 | 0.0171957626632454 | positive regulation of circadian rhythm | biological_process | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
86 | GO:0043570 | 0.0171957626632454 | maintenance of DNA repeat elements | biological_process | Any process involved in sustaining the fidelity and copy number of DNA repeat elements. [GOC:jl]
86 | GO:0046320 | 0.0171957626632454 | regulation of fatty acid oxidation | biological_process | Any process that modulates the frequency, rate or extent of fatty acid oxidation. [GOC:ai]
86 | GO:0080093 | 0.0171957626632454 | regulation of photorespiration | biological_process | Any process that modulates the rate, frequency or extent of photorespiration. Photorespiration is a light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. [GOC:tb]
86 | GO:0080148 | 0.0171957626632454 | negative regulation of response to water deprivation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to water deprivation. Response to water deprivation is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [PMID:18835996]
86 | GO:0009611 | 0.0195013270686773 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
86 | GO:0000018 | 0.0256844748860624 | regulation of DNA recombination | biological_process | Any process that modulates the frequency, rate or extent of DNA recombination, a DNA metabolic process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. [GOC:go_curators, ISBN:[PHONE]]
86 | GO:0010018 | 0.0256844748860624 | far-red light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of far red light by a photoreceptor molecule. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:lr, GOC:mtg_far_red, GOC:sm]
86 | GO:0010345 | 0.0256844748860624 | suberin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262]
86 | GO:0030007 | 0.0256844748860624 | cellular potassium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of potassium ions at the level of a cell. [GOC:mah]
86 | GO:0045910 | 0.0256844748860624 | negative regulation of DNA recombination | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of DNA recombination. [GOC:go_curators]
86 | GO:2000070 | 0.0256844748860624 | regulation of response to water deprivation | biological_process | Any process that modulates the frequency, rate or extent of response to water deprivation. [GOC:obol]
86 | GO:0048585 | 0.0279152545895132 | negative regulation of response to stimulus | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
86 | GO:0002237 | 0.0290017510907839 | response to molecule of bacterial origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. [GOC:rl, GOC:sm]
86 | GO:0051716 | 0.0321743629450187 | cellular response to stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. The process begins with detection of the stimulus by a cell and ends with a change in state or activity or the cell. [GOC:bf, GOC:jl]
86 | GO:0006281 | 0.0323573760774949 | DNA repair | biological_process | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. [PMID:11563486]
86 | GO:0010565 | 0.0325731940134053 | regulation of cellular ketone metabolic process | biological_process | Any process that modulates the chemical reactions and pathways involving any of a class of organic compounds that contain the carbonyl group, CO, and in which the carbonyl group is bonded only to carbon atoms. The general formula for a ketone is RCOR, where R and R are alkyl or [NAME]. [GOC:dph, GOC:tb]
86 | GO:0030004 | 0.0341012143448316 | cellular monovalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of monovalent inorganic cations at the level of a cell. [GOC:ai, GOC:mah]
86 | GO:0031146 | 0.0341012143448316 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083]
86 | GO:0050994 | 0.0341012143448316 | regulation of lipid catabolic process | biological_process | Any process that modulates the frequency, rate, or extent of the chemical reactions and pathways resulting in the breakdown of lipids. [GOC:ai]
86 | GO:0071490 | 0.0341012143448316 | cellular response to far red light | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mah]
86 | GO:0009753 | 0.0366254750085504 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
86 | GO:0009308 | 0.042220001882154 | amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
86 | GO:0005986 | 0.0424465798527298 | sucrose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
86 | GO:0006298 | 0.0424465798527298 | mismatch repair | biological_process | A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination. [ISBN:[PHONE], PMID:11687886]
86 | GO:0009954 | 0.0424465798527298 | proximal/distal pattern formation | biological_process | The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end). [GOC:dph, GOC:go_curators, GOC:isa_complete]
86 | GO:0010325 | 0.0424465798527298 | raffinose family oligosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization). [GOC:tair_curators]
86 | GO:0019217 | 0.0424465798527298 | regulation of fatty acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving fatty acids. [GOC:go_curators]
86 | GO:0035510 | 0.0424465798527298 | DNA dealkylation | biological_process | The removal of an alkyl group from one or more nucleotides within an DNA molecule. [GOC:bf]
86 | GO:0051053 | 0.0424465798527298 | negative regulation of DNA metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving DNA. [GOC:ai]
86 | GO:0080111 | 0.0424465798527298 | DNA demethylation | biological_process | The removal of a methyl group from one or more nucleotides within an DNA molecule. [PMID:17208187]
86 | GO:0006974 | 0.0433995470779364 | response to DNA damage stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators]
86 | GO:0009414 | 0.0458526009085247 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
86 | GO:0009415 | 0.0467506874156339 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
86 | GO:0034754 | 0.0484306510341556 | cellular hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells. [GOC:mah]
87 | GO:0042538 | 2.95596876954489e-05 | hyperosmotic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
87 | GO:0009611 | 9.91357587890291e-05 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
87 | GO:0006835 | 0.00109010050393256 | dicarboxylic acid transport | biological_process | The directed movement of dicarboxylic acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
87 | GO:0002213 | 0.00139589193395313 | defense response to insect | biological_process | A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism. [GOC:add]
87 | GO:0052544 | 0.00139589193395313 | defense response by callose deposition in cell wall | biological_process | Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
87 | GO:0015893 | 0.00173781400472006 | drug transport | biological_process | The directed movement of a drug, a substance used in the diagnosis, treatment or prevention of a disease, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
87 | GO:0009753 | 0.00220537889807586 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
87 | GO:0009414 | 0.00302713136614547 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
87 | GO:0006535 | 0.00639590661979537 | cysteine biosynthetic process from serine | biological_process | The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators]
87 | GO:0009759 | 0.00639590661979537 | indole glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [GOC:ai]
87 | GO:0015810 | 0.00639590661979537 | aspartate transport | biological_process | The directed movement of aspartate, the anion of aspartic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE]]
87 | GO:0015827 | 0.00639590661979537 | tryptophan transport | biological_process | The directed movement of tryptophan, 2-amino-3-(1H-indol-3-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
87 | GO:0019593 | 0.00639590661979537 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
87 | GO:0043201 | 0.00639590661979537 | response to leucine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a leucine stimulus. [GOC:mlg]
87 | GO:0071291 | 0.00639590661979537 | cellular response to selenium ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion. [GOC:mah]
87 | GO:0080052 | 0.00639590661979537 | response to histidine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histidine stimulus. [PMID:15889294]
87 | GO:0080053 | 0.00639590661979537 | response to phenylalanine | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a phenylalanine stimulus. [PMID:15889294]
87 | GO:0009607 | 0.0105081334010991 | response to biotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb]
87 | GO:0051707 | 0.0105081334010991 | response to other organism | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism. [GOC:ai]
87 | GO:0009804 | 0.0117661188115068 | [NAME] process | biological_process | The chemical reactions and pathways involving coumarins, compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
87 | GO:0009805 | 0.0117661188115068 | coumarin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of coumarins, a class of compounds derived from the phenylacrylic skeleton of cinnamic acids. [GOC:lr, GOC:yl]
87 | GO:0009266 | 0.0123269011474004 | response to temperature stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. [GOC:hb]
87 | GO:0009684 | 0.0126564075033047 | indoleacetic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole-3-acetic acid, a compound which functions as a growth regulator in plants. [ISBN:[PHONE]]
87 | GO:0006750 | 0.012751921930046 | glutathione biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins. [CHEBI:16856, GOC:ai, GOC:al, GOC:pde, ISBN:[PHONE]]
87 | [NAME] | 0.012751921930046 | malate transport | biological_process | The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
87 | GO:0015817 | 0.012751921930046 | histidine transport | biological_process | The directed movement of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
87 | GO:0015884 | 0.012751921930046 | folic acid transport | biological_process | The directed movement of folic acid (pteroylglutamic acid) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Folic acid is widely distributed as a member of the vitamin B complex and is essential for the synthesis of purine and pyrimidines. [GOC:ai]
87 | GO:0019184 | 0.012751921930046 | nonribosomal peptide biosynthetic process | biological_process | The biosynthetic process in which peptide bond formation occurs in the absence of the translational machinery. Examples include the synthesis of antibiotic peptides, and glutathione. [ISBN:[PHONE]]
87 | GO:0043091 | 0.012751921930046 | L-arginine import | biological_process | The directed movement of L-arginine, the L-enantiomer of 2-amino-5-guanidinopentanoic acid, into a cell or organelle. [GOC:jl, GOC:jsg, GOC:mah]
87 | GO:0043092 | 0.012751921930046 | L-amino acid import | biological_process | The directed movement of L-enantiomer amino acids into a cell or organelle. [GOC:jl, GOC:jsg, GOC:mah]
87 | GO:0048838 | 0.012751921930046 | release of seed from dormancy | biological_process | The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release. [GOC:dph, GOC:jid, GOC:tb, ISBN:[PHONE]]
87 | GO:0090467 | 0.012751921930046 | arginine import | biological_process | The directed movement of arginine into a cell or organelle. [GOC:tb]
87 | GO:0097438 | 0.012751921930046 | exit from dormancy | biological_process | The dormancy process that results in exit from dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
87 | GO:1902023 | 0.012751921930046 | L-arginine transport | biological_process | The directed movement of a L-arginine into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:kmv, GOC:TermGenie, PMID:22822152]
87 | GO:0009683 | 0.0135752961597437 | indoleacetic acid metabolic process | biological_process | The chemical reactions and pathways involving indole-3-acetic acid, a compound which functions as a growth regulator in plants. [GOC:mah]
87 | GO:0006857 | 0.0154973442901215 | oligopeptide transport | biological_process | The directed movement of oligopeptides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Oligopeptides are molecules that contain a small number (2 to 20) of amino-acid residues connected by peptide linkages. [ISBN:[PHONE]]
87 | GO:0009620 | 0.0155432777044303 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
87 | GO:0015833 | 0.0164997479911752 | peptide transport | biological_process | The directed movement of peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
87 | GO:0009737 | 0.0181281579316335 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
87 | GO:0009851 | 0.0185854512407681 | auxin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth. [GOC:lm, GOC:lr, ISBN:[PHONE]]
87 | GO:0042435 | 0.0185854512407681 | indole-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl]
87 | GO:0009700 | 0.0190682883924874 | indole phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:sm, ISBN:[PHONE]]
87 | GO:0015740 | 0.0190682883924874 | C4-dicarboxylate transport | biological_process | The directed movement of a C4-dicarboxylate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A C4-dicarboxylate is the anion of a dicarboxylic acid that contains four carbon atoms. [GOC:krc, GOC:mah]
87 | GO:0015822 | 0.0190682883924874 | ornithine transport | biological_process | The directed movement of ornithine, 2,5-diaminopentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
87 | GO:0042938 | 0.0190682883924874 | dipeptide transport | biological_process | The directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:46761, GOC:jl]
87 | GO:0043043 | 0.0190682883924874 | peptide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide. [CHEBI:16670, GOC:dph, GOC:jl]
87 | GO:0045117 | 0.0190682883924874 | azole transport | biological_process | The directed movement of azoles, heterocyclic compounds found in many biologically important substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE], Wikipedia:Azole]
87 | GO:0046217 | 0.0190682883924874 | indole phytoalexin metabolic process | biological_process | The chemical reactions and pathways involving indole phytoalexins, any indole compound produced by plants as part of their defense response. [GOC:ai]
87 | GO:0048830 | 0.0190682883924874 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
87 | GO:0051180 | 0.0190682883924874 | vitamin transport | biological_process | The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. [GOC:ai]
87 | GO:0052314 | 0.0190682883924874 | [NAME] process | biological_process | The chemical reactions and pathways involving phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
87 | GO:0052315 | 0.0190682883924874 | phytoalexin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phytoalexins, any of a range of substances produced by plants as part of their defense response. [Wikipedia:Phytoalexin]
87 | GO:0072337 | 0.0190682883924874 | modified amino acid transport | biological_process | The directed movement of modified amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:25359, GOC:mah]
87 | GO:0042886 | 0.0207765710081989 | amide transport | biological_process | The directed movement of an amide, any compound containing one, two, or three acyl groups attached to a nitrogen atom, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl, ISBN:[PHONE]]
87 | GO:0042430 | 0.023070221025725 | indole-containing compound metabolic process | biological_process | The chemical reactions and pathways involving compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl, GOC:mah]
87 | GO:0051704 | 0.0236428861533684 | multi-organism process | biological_process | A biological process which involves another organism of the same or different species. [GOC:jl]
87 | GO:0043090 | 0.0242546075055041 | amino acid import | biological_process | The directed movement of amino acids into a cell or organelle. [GOC:jl]
87 | GO:0006749 | 0.02534524703344 | [NAME] process | biological_process | The chemical reactions and pathways involving glutathione, the tripeptide glutamylcysteinylglycine, which acts as a coenzyme for some enzymes and as an antioxidant in the protection of sulfhydryl groups in enzymes and other proteins; it has a specific role in the reduction of hydrogen peroxide (H2O2) and oxidized ascorbate, and it participates in the gamma-glutamyl cycle. [CHEBI:16856, ISBN:[PHONE]]
87 | GO:0009682 | 0.02534524703344 | induced systemic resistance | biological_process | A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. [PMID:10234273]
87 | GO:0015809 | 0.02534524703344 | arginine transport | biological_process | The directed movement of arginine, 2-amino-5-guanidinopentanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE]]
87 | GO:0015819 | 0.02534524703344 | lysine transport | biological_process | The directed movement of lysine, 2,6-diaminohexanoic acid, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
87 | GO:0042939 | 0.02534524703344 | tripeptide transport | biological_process | The directed movement of a tripeptide, a compound containing three amino acids linked together by peptide bonds, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:47923, GOC:jl]
87 | GO:0097305 | 0.0284138950435458 | response to alcohol | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
87 | GO:0034754 | 0.0292344531067061 | cellular hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells. [GOC:mah]
87 | GO:0000103 | 0.0315830374525073 | sulfate assimilation | biological_process | The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. [GOC:jl]
87 | GO:0005986 | 0.0315830374525073 | sucrose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
87 | GO:0006855 | 0.0315830374525073 | drug transmembrane transport | biological_process | The process in which a drug is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:ai, GOC:bf]
87 | GO:0010325 | 0.0315830374525073 | raffinose family oligosaccharide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of raffinose family oligosaccharides (RFOs, such as raffinose, stachyose, verbascose and other molecules with a higher degree of galactosyl polymerization). [GOC:tair_curators]
87 | GO:0009699 | 0.0318649910732448 | phenylpropanoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic derivatives of trans-cinnamic acid. [GOC:jl]
87 | GO:0009850 | 0.0318649910732448 | [NAME] process | biological_process | The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth. [GOC:lr]
87 | GO:0044550 | 0.0319084414677035 | secondary metabolite biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of secondary metabolites, the compounds that are not necessarily required for growth and maintenance of cells, and are often unique to a taxon. [GOC:jl]
87 | GO:0009814 | 0.0321754048992118 | defense response, incompatible interaction | biological_process | A response of a plant to a pathogenic agent that prevents the occurrence or spread of disease. [GOC:lr]
87 | GO:0006518 | 0.037781897830503 | peptide metabolic process | biological_process | The chemical reactions and pathways involving peptides, compounds of two or more amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. [CHEBI:16670, GOC:go_curators]
87 | GO:0006561 | 0.037781897830503 | proline biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [ISBN:[PHONE]]
87 | GO:0009641 | 0.037781897830503 | [NAME] | biological_process | Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome. [Wikipedia:Shade_avoidance]
87 | GO:0015807 | 0.037781897830503 | L-amino acid transport | biological_process | The directed movement of L-enantiomer amino acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai, GOC:jsg, GOC:mah]
87 | GO:0051181 | 0.037781897830503 | cofactor transport | biological_process | The directed movement of a cofactor into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A cofactor is a substance that is required for the activity of an enzyme or other protein. [GOC:ai]
87 | GO:0045087 | 0.0398791730560191 | innate immune response | biological_process | Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
87 | GO:0072330 | 0.0414497858950793 | monocarboxylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
87 | GO:0006955 | 0.0418635584249271 | immune response | biological_process | Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GO_REF:0000022, GOC:add, GOC:mtg_15nov05]
87 | GO:0033993 | 0.0428781970895357 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
87 | GO:0000162 | 0.0439420649379119 | tryptophan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:[PHONE], MetaCyc:TRPSYN-PWY]
87 | GO:0046219 | 0.0439420649379119 | indolalkylamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
87 | GO:0071281 | 0.0439420649379119 | cellular response to iron ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:mah]
87 | GO:0009617 | 0.0446318691284839 | response to bacterium | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. [GOC:hb]
87 | GO:0009695 | 0.0463191762468661 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
88 | GO:0005513 | 0.00399744163735977 | detection of calcium ion | biological_process | The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal. [GOC:pg]
88 | GO:0006032 | 0.00399744163735977 | chitin catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of beta-(1->4)-linked N-acetyl-D-glucosamine residues. [GOC:jl, ISBN:[PHONE]]
88 | GO:0009759 | 0.00399744163735977 | indole glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [GOC:ai]
88 | GO:0033611 | 0.00399744163735977 | oxalate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of oxalate, the organic acid ethanedioate. [CHEBI:30623, GOC:mlg]
88 | [NAME] | 0.00399744163735977 | cellular response to sucrose starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sucrose. [GOC:jl]
88 | GO:0015996 | 0.00707101725487278 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
88 | GO:0006529 | 0.00797954046331198 | asparagine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of asparagine, 2-amino-3-carbamoylpropanoic acid. [GOC:go_curators]
88 | GO:0010136 | 0.00797954046331198 | ureide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ureide, which is the organic form of nitrogen in nitrogen fixing and transporting plants with the release of ammonium. [GOC:pz]
88 | GO:0042539 | 0.00797954046331198 | hypotonic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
88 | GO:0030007 | 0.0119463529215027 | cellular potassium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of potassium ions at the level of a cell. [GOC:mah]
88 | GO:0042938 | 0.0119463529215027 | dipeptide transport | biological_process | The directed movement of a dipeptide, a combination of two amino acids by means of a peptide (-CO-NH-) link, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:46761, GOC:jl]
88 | GO:0048830 | 0.0119463529215027 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
88 | GO:0080024 | 0.0119463529215027 | [NAME] process | biological_process | The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants. [PMID:18725356]
88 | GO:0080026 | 0.0119463529215027 | response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [PMID:18725356]
88 | GO:0009850 | 0.0130972994948392 | [NAME] process | biological_process | The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth. [GOC:lr]
88 | GO:0009682 | 0.0158979352566564 | induced systemic resistance | biological_process | A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. [PMID:10234273]
88 | GO:0030004 | 0.0158979352566564 | cellular monovalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of monovalent inorganic cations at the level of a cell. [GOC:ai, GOC:mah]
88 | GO:0042939 | 0.0158979352566564 | tripeptide transport | biological_process | The directed movement of a tripeptide, a compound containing three amino acids linked together by peptide bonds, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:47923, GOC:jl]
88 | GO:0051017 | 0.0198343435156281 | actin filament bundle assembly | biological_process | The assembly of actin filament bundles; actin filaments are on the same axis but may be oriented with the same or opposite polarities and may be packed with different levels of tightness. [GOC:ai]
88 | GO:0009641 | 0.0237556335480077 | [NAME] | biological_process | Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome. [Wikipedia:Shade_avoidance]
88 | GO:0010030 | 0.0237556335480077 | positive regulation of seed germination | biological_process | Any process that activates or increase the rate of seed germination. [GOC:sm]
88 | GO:0000162 | 0.0276618610064974 | tryptophan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:[PHONE], MetaCyc:TRPSYN-PWY]
88 | GO:0010214 | 0.0276618610064974 | seed coat development | biological_process | The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure. [GOC:go_curators]
88 | GO:0046219 | 0.0276618610064974 | indolalkylamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
88 | GO:0055075 | 0.0276618610064974 | potassium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of potassium ions within an organism or cell. [GOC:jid, GOC:mah]
88 | GO:0009063 | 0.0313889201274552 | cellular amino acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of amino acids, organic acids containing one or more amino substituents. [GOC:ai]
88 | GO:0009813 | 0.0330610098540261 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
88 | GO:0052482 | 0.0354293498348518 | defense response by cell wall thickening | biological_process | A type of cell wall modification, in which the cell wall is reinforced and made thicker, that occurs as part of the defense response of an organism. [GOC:mtg_pamgo_17jul06]
88 | GO:0052544 | 0.0354293498348518 | defense response by callose deposition in cell wall | biological_process | Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
88 | GO:1901700 | 0.0404327600022493 | response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
88 | GO:0009812 | 0.0428609025573741 | [NAME] process | biological_process | The chemical reactions and pathways involving flavonoids, a group of water-soluble phenolic derivatives containing a flavan skeleton including flavones, flavonols and flavanoids, and anthocyanins. [GOC:tair_curators, ISBN:[PHONE]]
88 | GO:0006995 | 0.0431372513153445 | cellular response to nitrogen starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nitrogen. [GOC:jl]
88 | GO:0055067 | 0.0431372513153445 | monovalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of monovalent inorganic cations within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
88 | GO:0009646 | 0.0469689938616763 | response to absence of light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an absence of light stimuli. [GOC:go_curators]
88 | GO:0009308 | 0.0495977894850325 | amine metabolic process | biological_process | The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group, as carried out by individual cells. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom. [GOC:jl, ISBN:[PHONE]]
88 | GO:0042537 | 0.0495977894850325 | benzene-containing compound metabolic process | biological_process | The chemical reactions and pathways involving benzene, [NAME], a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation, or any of its derivatives. [CHEBI:22712, GOC:jl]
88 | GO:0007154 | 0.0498583355282493 | cell communication | biological_process | Any process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. [GOC:mah]
89 | GO:0015996 | 7.75292308126065e-05 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
89 | GO:0046487 | 0.000200274830665358 | glyoxylate metabolic process | biological_process | The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH. [ISBN:[PHONE]]
89 | GO:0006879 | 0.00194758267549115 | cellular iron ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. [GOC:ai, GOC:mah]
89 | GO:0010200 | 0.00502105761025019 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
89 | [NAME] | 0.0102578207373642 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
89 | GO:0033993 | 0.0106858429820607 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
89 | GO:0036293 | 0.0111691868250319 | response to decreased oxygen levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen. [GOC:al]
89 | GO:0070482 | 0.0111691868250319 | response to oxygen levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. [GOC:BHF, GOC:mah]
89 | GO:0006059 | 0.0142308922290902 | hexitol metabolic process | biological_process | The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
89 | GO:0006097 | 0.0142308922290902 | glyoxylate cycle | biological_process | A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate. [ISBN:[PHONE]]
89 | GO:0019401 | 0.0142308922290902 | alditol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
89 | GO:0019406 | 0.0142308922290902 | hexitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
89 | GO:0019593 | 0.0142308922290902 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
89 | GO:0019594 | 0.0142308922290902 | mannitol metabolic process | biological_process | The chemical reactions and pathways involving mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
89 | GO:0019605 | 0.0142308922290902 | [NAME] process | biological_process | The chemical reactions and pathways involving any butyrate, the anions of butyric acid (butanoic acid), a saturated, unbranched aliphatic acid. [ISBN:[PHONE]]
89 | GO:0033530 | 0.0142308922290902 | raffinose metabolic process | biological_process | The chemical reactions and pathways involving raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. [CHEBI:16634, GOC:mah]
89 | GO:0034214 | 0.0142308922290902 | protein hexamerization | biological_process | The formation of a protein hexamer, a macromolecular structure consisting of six noncovalently associated identical or nonidentical subunits. [GOC:ecd]
89 | GO:0034484 | 0.0142308922290902 | raffinose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. [CHEBI:16634, GOC:mah]
89 | GO:0046473 | 0.0142308922290902 | phosphatidic acid metabolic process | biological_process | The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. [ISBN:[PHONE]]
89 | GO:0090410 | 0.0142308922290902 | malonate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of malonate, the propanedioate ion. [GOC:tb]
89 | GO:0097305 | 0.0147481955401311 | response to alcohol | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
89 | GO:0009737 | 0.0212690095939022 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
89 | GO:0009414 | 0.0239043308309332 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
89 | GO:0009415 | 0.0245716688314159 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
89 | GO:0010039 | 0.0264285153310563 | response to iron ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:sm]
89 | GO:0006083 | 0.0282615096272999 | acetate metabolic process | biological_process | The chemical reactions and pathways involving acetate, the anion of acetic acid. [GOC:go_curators]
89 | GO:0008216 | 0.0282615096272999 | [NAME] process | biological_process | The chemical reactions and pathways involving spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:ai]
89 | GO:0008295 | 0.0282615096272999 | spermidine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of spermidine, N-(3-aminopropyl)-1,4-diaminobutane. [GOC:go_curators, ISBN:[PHONE]]
89 | GO:0009961 | 0.0282615096272999 | response to 1-aminocyclopropane-1-carboxylic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus. [GOC:jl]
89 | GO:0010088 | 0.0282615096272999 | phloem development | biological_process | The formation of the principal food-conducting tissue of a vascular plant. [GOC:tb, ISBN:[PHONE]]
89 | GO:0032365 | 0.0282615096272999 | intracellular lipid transport | biological_process | The directed movement of lipids within cells. [GOC:mah]
89 | GO:0046459 | 0.0282615096272999 | short-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids with a chain length of less than C6. [[NAME], ISBN:[PHONE]]
89 | GO:0080148 | 0.0282615096272999 | negative regulation of response to water deprivation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to water deprivation. Response to water deprivation is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [PMID:18835996]
89 | GO:0006826 | 0.0384687412133618 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
89 | GO:0080167 | 0.0391677675778601 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
89 | GO:0006595 | 0.04174998942148 | polyamine metabolic process | biological_process | The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. [ISBN:[PHONE]]
89 | GO:0043649 | 0.0420946391289237 | dicarboxylic acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of dicarboxylic acids, any organic acid containing two carboxyl (-COOH) groups. [ISBN:[PHONE]]
89 | GO:0071456 | 0.0420946391289237 | cellular response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:mah]
89 | GO:2000070 | 0.0420946391289237 | regulation of response to water deprivation | biological_process | Any process that modulates the frequency, rate or extent of response to water deprivation. [GOC:obol]
89 | GO:0006979 | 0.0429657205012859 | response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731]
90 | GO:0051592 | 0.00042244880050806 | response to calcium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a calcium ion stimulus. [GOC:ai]
90 | GO:0010118 | 0.00212709625935459 | stomatal movement | biological_process | The process of opening or closing of stomata, which is directly related to the stomatal conductance (measuring rate of passage of either water vapor or carbon dioxide (CO2) through stomata). [GOC:sm]
90 | GO:0043161 | 0.00466295951368963 | proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:go_curators]
90 | GO:0002237 | 0.00585117116768527 | response to molecule of bacterial origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. [GOC:rl, GOC:sm]
90 | GO:0007031 | 0.00594269524058007 | peroxisome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah]
90 | GO:0005985 | 0.0060005481908904 | sucrose metabolic process | biological_process | The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
90 | GO:0006631 | 0.00701499300701197 | fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:[PHONE]]
90 | GO:0005513 | 0.0119923249121644 | detection of calcium ion | biological_process | The series of events in which a calcium ion stimulus is received by a cell and converted into a molecular signal. [GOC:pg]
90 | GO:0006059 | 0.0119923249121644 | hexitol metabolic process | biological_process | The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
90 | GO:0006097 | 0.0119923249121644 | glyoxylate cycle | biological_process | A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate. [ISBN:[PHONE]]
90 | GO:0010111 | 0.0119923249121644 | glyoxysome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway. [GOC:tb]
90 | GO:0010273 | 0.0119923249121644 | detoxification of copper ion | biological_process | Any process that reduces or removes the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion. [PMID:16367966]
90 | GO:0019401 | 0.0119923249121644 | alditol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
90 | GO:0019406 | 0.0119923249121644 | hexitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
90 | GO:0019593 | 0.0119923249121644 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
90 | GO:0019594 | 0.0119923249121644 | mannitol metabolic process | biological_process | The chemical reactions and pathways involving mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
90 | GO:0019605 | 0.0119923249121644 | [NAME] process | biological_process | The chemical reactions and pathways involving any butyrate, the anions of butyric acid (butanoic acid), a saturated, unbranched aliphatic acid. [ISBN:[PHONE]]
90 | GO:0031936 | 0.0119923249121644 | negative regulation of chromatin silencing | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of chromatin silencing. [GOC:mah]
90 | GO:0033542 | 0.0119923249121644 | fatty acid beta-oxidation, unsaturated, even number | biological_process | A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on even-numbered carbons are degraded. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, MetaCyc:PWY-5138]
90 | GO:0045815 | 0.0119923249121644 | positive regulation of gene expression, epigenetic | biological_process | Any epigenetic process that activates or increases the rate of gene expression. [GOC:go_curators]
90 | GO:0060969 | 0.0119923249121644 | negative regulation of gene silencing | biological_process | Any process that decreases the rate, frequency, or extent of gene silencing, the transcriptional or post-transcriptional process carried out at the cellular level that results in long-term gene inactivation. [GOC:dph, GOC:tb]
90 | GO:0009746 | 0.0139482290930068 | response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:jl]
90 | GO:0034284 | 0.0145614416290612 | response to monosaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. [GOC:mah]
90 | GO:0006635 | 0.0158386408764588 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
90 | GO:0019395 | 0.0158386408764588 | fatty acid oxidation | biological_process | The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [ISBN:[PHONE], MetaCyc:FAO-PWY]
90 | GO:0009625 | 0.0171786512813197 | response to insect | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect. [GOC:hb]
90 | GO:0010351 | 0.0171786512813197 | lithium ion transport | biological_process | The directed movement of lithium ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [PMID:17270011]
90 | GO:0034440 | 0.0185999937835059 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
90 | GO:0006083 | 0.023842728819306 | acetate metabolic process | biological_process | The chemical reactions and pathways involving acetate, the anion of acetic acid. [GOC:go_curators]
90 | GO:0006971 | 0.023842728819306 | hypotonic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hypotonic environment, i.e. an environment with a lower concentration of solutes than the organism or cell. [GOC:jl, PMID:12598593]
90 | GO:0042539 | 0.023842728819306 | hypotonic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
90 | GO:0046459 | 0.023842728819306 | short-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids with a chain length of less than C6. [[NAME], ISBN:[PHONE]]
90 | GO:0046487 | 0.023842728819306 | glyoxylate metabolic process | biological_process | The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH. [ISBN:[PHONE]]
90 | GO:0048838 | 0.023842728819306 | release of seed from dormancy | biological_process | The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release. [GOC:dph, GOC:jid, GOC:tb, ISBN:[PHONE]]
90 | GO:0080005 | 0.023842728819306 | photosystem stoichiometry adjustment | biological_process | Adjustment of Photosystem I/Photosystem II ratio in response to light conditions. The function of photosystem stoichiometry adjustment is to compensate for any deficiency in energy conversion at either photosystem I or photosystem II by increasing the quantity the photosystem that will otherwise become the rate-limiting to overall photosynthesis. [PMID:11607105]
90 | GO:0097438 | 0.023842728819306 | exit from dormancy | biological_process | The dormancy process that results in exit from dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
90 | GO:0009062 | 0.0267541942157539 | fatty acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:go_curators]
90 | GO:0035966 | 0.0272719173836246 | response to topologically incorrect protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure. [GOC:bf]
90 | GO:0072329 | 0.0276705278458459 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
90 | GO:0030258 | 0.0286055147488124 | lipid modification | biological_process | The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid. [GOC:mah]
90 | [NAME] | 0.0305155858775457 | cellular metal ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of metal ions at the level of a cell. [GOC:ai, GOC:mah]
90 | GO:0071215 | 0.0325331393977343 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
90 | GO:0044242 | 0.034610228064971 | cellular lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells. [GOC:jl]
90 | GO:0050832 | 0.034610228064971 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
90 | GO:0001678 | 0.035552868828958 | cellular glucose homeostasis | biological_process | A cellular homeostatic process involved in the maintenance of an internal steady state of glucose within a cell or between a cell and its external environment. [GOC:dph, GOC:go_curators, GOC:tb]
90 | GO:0010215 | 0.035552868828958 | cellulose microfibril organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a cellulose microfibril, any of the cellulose structures laid down in orthogonal layers in a plant cell wall. [GOC:mah, PMID:12468730]
90 | GO:0030007 | 0.035552868828958 | cellular potassium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of potassium ions at the level of a cell. [GOC:mah]
90 | GO:0030026 | 0.035552868828958 | cellular manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions at the level of a cell. [GOC:mah]
90 | GO:0031935 | 0.035552868828958 | regulation of chromatin silencing | biological_process | Any process that affects the rate, extent or location of chromatin silencing. [GOC:mah]
90 | GO:0055071 | 0.035552868828958 | manganese ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of manganese ions within an organism or cell. [GOC:jid, GOC:mah]
90 | GO:0070726 | 0.035552868828958 | cell wall assembly | biological_process | The aggregation, arrangement and bonding together of a cell wall. A cell wall is a rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal, and most prokaryotic cells. [GOC:mah]
90 | GO:0071333 | 0.035552868828958 | cellular response to glucose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a glucose stimulus. [GOC:mah]
90 | [NAME] | 0.035552868828958 | plant-type cell wall assembly | biological_process | The aggregation, arrangement and bonding together of a set of components to form a cellulose- and pectin-containing cell wall. [GOC:mah]
90 | GO:0016042 | 0.0356772267245769 | lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators]
90 | [NAME] | 0.0356993893436788 | response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:sm]
90 | GO:1901700 | 0.0363689820931925 | response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
90 | GO:0080129 | 0.0378335076667596 | proteasome core complex assembly | biological_process | The aggregation, arrangement and bonding together of a mature, active 20S proteasome core particle complex that does not contain any regulatory particles. [PMID:12401807, PMID:17971041]
90 | GO:0010119 | 0.0410585562155939 | regulation of stomatal movement | biological_process | Any process that modulates the frequency, rate or extent of stomatal movement. [GOC:sm]
90 | GO:0048878 | 0.0461375726457046 | chemical homeostasis | biological_process | Any biological process involved in the maintenance of an internal steady state of a chemical. [GOC:isa_complete]
90 | GO:0030004 | 0.0471243829607135 | cellular monovalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of monovalent inorganic cations at the level of a cell. [GOC:ai, GOC:mah]
90 | GO:0030198 | 0.0471243829607135 | extracellular matrix organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an extracellular matrix. [GOC:mah]
90 | GO:0031146 | 0.0471243829607135 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083]
90 | GO:0042593 | 0.0471243829607135 | glucose homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of glucose within an organism or cell. [GOC:go_curators]
90 | GO:0043062 | 0.0471243829607135 | extracellular structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures in the space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane, and also covers the host cell environment outside an intracellular parasite. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
90 | GO:0071326 | 0.0471243829607135 | cellular response to monosaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a monosaccharide stimulus. [GOC:mah]
90 | GO:0071331 | 0.0471243829607135 | cellular response to hexose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hexose stimulus. [GOC:mah]
90 | GO:0016054 | 0.0483389775843841 | organic acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of organic acids, any acidic compound containing carbon in covalent linkage. [ISBN:[PHONE]]
90 | GO:0046395 | 0.0483389775843841 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of carboxylic acids, any organic acid containing one or more carboxyl (-COOH) groups. [ISBN:[PHONE]]
90 | GO:0055065 | 0.0497324493643357 | metal ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of metal ions within an organism or cell. [GOC:ai, GOC:jid, GOC:mah]
91 | GO:0010478 | 0.00671570195072778 | chlororespiration | biological_process | A respiratory electron flow (from NAD(P)H to plastoquinone (PQ) and [NAME]) involving both a nonphotochemical reduction and re-oxidation of PQ pool. [GOC:mtg_electron_transport, GOC:tb, PMID:17573537]
91 | GO:0009554 | 0.0133873700328976 | megasporogenesis | biological_process | The process in which the megasporocyte undergoes meiosis, giving rise to four haploid megaspores in the nucellus. [GOC:mtg_plant, GOC:tb]
91 | GO:0048838 | 0.0133873700328976 | release of seed from dormancy | biological_process | The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release. [GOC:dph, GOC:jid, GOC:tb, ISBN:[PHONE]]
91 | [NAME] | 0.0133873700328976 | positive regulation of cell division | biological_process | Any process that activates or increases the frequency, rate or extent of cell division. [GOC:ai]
91 | GO:0080148 | 0.0133873700328976 | negative regulation of response to water deprivation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to water deprivation. Response to water deprivation is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [PMID:18835996]
91 | GO:0097438 | 0.0133873700328976 | exit from dormancy | biological_process | The dormancy process that results in exit from dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
91 | GO:0002679 | 0.0170057132566245 | respiratory burst involved in defense response | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [GOC:add, ISBN:[PHONE], PMID:12789499]
91 | GO:0045730 | 0.0170057132566245 | respiratory burst | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [ISBN:[PHONE]]
91 | GO:2000070 | 0.020015285973244 | regulation of response to water deprivation | biological_process | Any process that modulates the frequency, rate or extent of response to water deprivation. [GOC:obol]
91 | GO:0009414 | 0.0204068269376332 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
91 | GO:0009415 | 0.0208365378165594 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
91 | GO:0009628 | 0.0213426599224146 | response to abiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus. [GOC:hb]
91 | GO:0031146 | 0.0265997297405121 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083]
91 | GO:0034754 | 0.032000172309053 | cellular hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells. [GOC:mah]
91 | GO:0010583 | 0.0334204698639161 | response to cyclopentenone | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cyclopentenone stimulus. Cyclopentenones are oxylipins derived from polyunsaturated fatty acids. They are structurally similar to jasmonic acid, but contain a reactive unsaturated carbonyl structure in the cyclo-ring. Cyclopentenones include phytoprostanes and 12-oxo-phytodienoic acid. [PMID:18334669]
91 | GO:0006970 | 0.0339129188646973 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
91 | GO:0009850 | 0.0348652192604344 | [NAME] process | biological_process | The chemical reactions and pathways involving auxins, a group of plant hormones that regulate aspects of plant growth. [GOC:lr]
92 | GO:0009861 | 0.00169892340746342 | [NAME] and ethylene-dependent systemic resistance | biological_process | The jasmonic acid and ethylene ([NAME]) dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen. [GOC:jy, PMID:10234273]
92 | GO:0015996 | 0.00486745405590791 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
92 | GO:0009789 | 0.00716663896331638 | positive regulation of abscisic acid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of abscisic acid mediated signal transduction. [GOC:lr]
92 | GO:0010224 | 0.00790356725891604 | response to UV-B | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-B radiation stimulus. UV-B radiation (UV-B light) spans the wavelengths 290 to 320 nm. [GOC:tb]
92 | GO:0009661 | 0.0108730412535997 | chromoplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chromoplast. A chromoplast is a plastid containing pigments other than chlorophyll, usually yellow and orange carotenoid pigments. [GOC:jid]
92 | GO:0009727 | 0.0108730412535997 | detection of ethylene stimulus | biological_process | The series of events in which an ethylene (ethene) stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
92 | GO:0010046 | 0.0108730412535997 | response to mycotoxin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mycotoxin stimulus. A mycotoxin is a toxic chemical substance produced by fungi. [GOC:sm]
92 | GO:0010111 | 0.0108730412535997 | glyoxysome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway. [GOC:tb]
92 | GO:0015939 | 0.0108730412535997 | pantothenate metabolic process | biological_process | The chemical reactions and pathways involving pantothenate, the anion of pantothenic acid, the amide of beta-alanine and pantoic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. [GOC:ai, ISBN:[PHONE]]
92 | GO:0015940 | 0.0108730412535997 | pantothenate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pantothenate, the anion of pantothenic acid. It is a B complex vitamin that is a constituent of coenzyme A and is distributed ubiquitously in foods. [GOC:ai, ISBN:[PHONE]]
92 | GO:0033530 | 0.0108730412535997 | raffinose metabolic process | biological_process | The chemical reactions and pathways involving raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. [CHEBI:16634, GOC:mah]
92 | GO:0034214 | 0.0108730412535997 | protein hexamerization | biological_process | The formation of a protein hexamer, a macromolecular structure consisting of six noncovalently associated identical or nonidentical subunits. [GOC:ecd]
92 | GO:0034484 | 0.0108730412535997 | raffinose catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of raffinose, the trisaccharide beta-D-fructofuranosyl alpha-D-galactopyranosyl-(1->6)-alpha-D-glucopyranoside. [CHEBI:16634, GOC:mah]
92 | GO:0006471 | 0.0216295794264353 | protein ADP-ribosylation | biological_process | The transfer, from NAD, of ADP-ribose to protein amino acids. [GOC:pr, RESID:AA0040, RESID:AA0168, RESID:AA0169, RESID:AA0231, RESID:AA0237, RESID:AA0295]
92 | [NAME] | 0.0216295794264353 | [NAME] and ethylene-dependent systemic resistance, ethylene mediated signaling pathway | biological_process | The series of molecular signals mediated by ethylene ([NAME]) involved in jasmonic acid/ethylene dependent systemic resistance. [GOC:jy]
92 | GO:0009739 | 0.02368995081009 | response to gibberellin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gibberellin stimulus. [GOC:jl]
92 | GO:0009694 | 0.0270776595352321 | [NAME] process | biological_process | The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid. [ISBN:[PHONE]]
92 | GO:0007569 | 0.0322708443975702 | cell aging | biological_process | An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469). [GOC:PO_curators]
92 | GO:0009649 | 0.0322708443975702 | entrainment of circadian clock | biological_process | The synchronization of a circadian rhythm to environmental time cues such as light. [GOC:jid]
92 | GO:0009864 | 0.0322708443975702 | induced systemic resistance, [NAME] mediated signaling pathway | biological_process | The series of molecular signals mediated by [NAME] involved in induced systemic resistance. [GOC:jy]
92 | GO:0019464 | 0.0322708443975702 | glycine decarboxylation via glycine cleavage system | biological_process | The chemical reactions and pathways resulting in the breakdown of glycine by oxidative cleavage to carbon dioxide, ammonia, and a methylene group, mediated by enzymes of the glycine cleavage complex. [MetaCyc:GLYCLEAV-PWY]
92 | GO:0043966 | 0.0322708443975702 | histone H3 acetylation | biological_process | The modification of histone H3 by the addition of an acetyl group. [GOC:jl]
92 | GO:0090342 | 0.0322708443975702 | regulation of cell aging | biological_process | Any process that modulates the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan. [GOC:BHF, GOC:dph, GOC:tb]
92 | GO:0010119 | 0.0343307119470415 | regulation of stomatal movement | biological_process | Any process that modulates the frequency, rate or extent of stomatal movement. [GOC:sm]
92 | GO:0009611 | 0.0389218991097294 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
92 | GO:1900140 | 0.0416727619865674 | regulation of seedling development | biological_process | Any process that modulates the frequency, rate or extent of seedling development. [GOC:TermGenie]
92 | GO:0006552 | 0.042798053257125 | leucine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai]
92 | GO:0009313 | 0.042798053257125 | oligosaccharide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. [ISBN:[PHONE]]
92 | GO:0009682 | 0.042798053257125 | induced systemic resistance | biological_process | A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. [PMID:10234273]
92 | GO:0009720 | 0.042798053257125 | detection of hormone stimulus | biological_process | The series of events in which a hormone stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
92 | GO:0009726 | 0.042798053257125 | detection of endogenous stimulus | biological_process | The series of events in which an endogenous stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
92 | GO:0015867 | 0.042798053257125 | ATP transport | biological_process | The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
92 | GO:0009813 | 0.0430703259565126 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
92 | GO:0002237 | 0.044240166398088 | response to molecule of bacterial origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. [GOC:rl, GOC:sm]
92 | GO:0007623 | 0.047667142909561 | circadian rhythm | biological_process | Any biological process in an organism that recurs with a regularity of approximately 24 hours. [GOC:bf, GOC:go_curators]
92 | GO:0048511 | 0.047667142909561 | rhythmic process | biological_process | Any process pertinent to the generation and maintenance of rhythms in the physiology of an organism. [GOC:jid]
92 | GO:0009963 | 0.0495457925845773 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
93 | GO:0015867 | 0.00125997728553835 | ATP transport | biological_process | The directed movement of ATP, adenosine triphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
93 | GO:0009738 | 0.0021022263964297 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
93 | GO:0051181 | 0.00308993757077371 | cofactor transport | biological_process | The directed movement of a cofactor into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A cofactor is a substance that is required for the activity of an enzyme or other protein. [GOC:ai]
93 | GO:0009410 | 0.00338194557690112 | response to xenobiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a xenobiotic compound stimulus. Xenobiotic compounds are compounds foreign to living organisms. [GOC:jl]
93 | GO:0010363 | 0.00788777996105781 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
93 | [NAME] | 0.00853472647797725 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
93 | GO:0006097 | 0.0147105852254777 | glyoxylate cycle | biological_process | A modification of the TCA cycle occurring in some plants and microorganisms, in which isocitrate is cleaved to glyoxylate and succinate. Glyoxylate can then react with acetyl-CoA to form malate. [ISBN:[PHONE]]
93 | GO:0010111 | 0.0147105852254777 | glyoxysome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway. [GOC:tb]
93 | GO:0015880 | 0.0147105852254777 | coenzyme A transport | biological_process | The directed movement of coenzyme A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. [GOC:ai]
93 | GO:0019605 | 0.0147105852254777 | [NAME] process | biological_process | The chemical reactions and pathways involving any butyrate, the anions of butyric acid (butanoic acid), a saturated, unbranched aliphatic acid. [ISBN:[PHONE]]
93 | GO:0019919 | 0.0147105852254777 | peptidyl-arginine methylation, to asymmetrical-dimethyl arginine | biological_process | The process of methylation of peptidyl-arginine to form peptidyl-N(omega),N(omega)-dimethyl-L-arginine. [[NAME]:AA0068, RESID:AA0069]
93 | GO:0030974 | 0.0147105852254777 | thiamine pyrophosphate transport | biological_process | The directed movement of thiamine pyrophosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mlg]
93 | GO:0032527 | 0.0147105852254777 | protein exit from endoplasmic reticulum | biological_process | The directed movement of proteins from the endoplasmic reticulum. [GOC:rb]
93 | GO:0034969 | 0.0147105852254777 | histone arginine methylation | biological_process | The modification of a histone by addition of a methyl group to an arginine residue. [GOC:mah]
93 | GO:0035247 | 0.0147105852254777 | peptidyl-arginine omega-N-methylation | biological_process | The addition of a methyl group onto a terminal nitrogen (omega nitrogen) atom of an arginine residue in a protein. [PMID:14705965, RESID:AA0067, RESID:AA0068, RESID:AA0069]
93 | GO:0035349 | 0.0147105852254777 | coenzyme A transmembrane transport | biological_process | The process in which coenzyme A is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. Coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, is an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester. [GOC:bf]
93 | [NAME] | 0.0147105852254777 | coenzyme transport | biological_process | The directed movement of a coenzyme into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A coenzyme is any of various nonprotein organic cofactors that are required, in addition to an enzyme and a substrate, for an enzymatic reaction to proceed. [GOC:ai]
93 | GO:0071106 | 0.0147105852254777 | adenosine 3',5'-bisphosphate [NAME] | biological_process | The directed movement of adenosine 3',5'-bisphosphate across a membrane into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [CHEBI:37240, GOC:mah, PubChem_Compound:159296]
93 | GO:1902065 | 0.0147105852254777 | response to L-glutamate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-glutamate stimulus. [GOC:TermGenie, PMID:23574009]
93 | GO:0006839 | 0.0150010430257923 | mitochondrial transport | biological_process | Transport of substances into, out of or within a mitochondrion. [GOC:ai]
93 | GO:0009556 | 0.0173649701463408 | microsporogenesis | biological_process | The process in which the microsporocyte undergoes meiosis, giving rise to four haploid microspores. [GOC:mtg_plant, GOC:tb]
93 | GO:0048236 | 0.0173649701463408 | plant-type spore development | biological_process | The process whose specific outcome is the progression of the spore over time, from its formation to the mature structure. The spore gives rise to gametophytes. [GOC:jid, http://www.m-w.com]
93 | GO:0051645 | 0.0198467721245368 | Golgi localization | biological_process | Any process in which the Golgi is transported to, and/or maintained in, a specific location within the cell. [GOC:ai]
93 | GO:0051646 | 0.0198467721245368 | mitochondrion localization | biological_process | Any process in which a mitochondrion or mitochondria are transported to, and/or maintained in, a specific location within the cell. [GOC:ai]
93 | GO:0060151 | 0.0198467721245368 | peroxisome localization | biological_process | Any process in which a peroxisome is transported to, and/or maintained in, a specific location. A peroxisome is a small membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:dph, PMID:16449325]
93 | GO:0009753 | 0.020129343042483 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
93 | GO:0071407 | 0.0213311626161005 | cellular response to organic cyclic compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus. [GOC:mah]
93 | GO:0016567 | 0.0285031880599896 | protein ubiquitination | biological_process | The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]
93 | GO:0006083 | 0.0292070870900016 | acetate metabolic process | biological_process | The chemical reactions and pathways involving acetate, the anion of acetic acid. [GOC:go_curators]
93 | GO:0009423 | 0.0292070870900016 | chorismate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds. [GOC:sm, ISBN:[PHONE]]
93 | GO:0015866 | 0.0292070870900016 | ADP transport | biological_process | The directed movement of ADP, adenosine diphosphate, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
93 | GO:0018195 | 0.0292070870900016 | peptidyl-arginine modification | biological_process | The modification of peptidyl-arginine. [GOC:go_curators]
93 | GO:0018216 | 0.0292070870900016 | peptidyl-arginine methylation | biological_process | The addition of a methyl group to an arginine residue in a protein. [GOC:mah]
93 | GO:0035246 | 0.0292070870900016 | peptidyl-arginine N-methylation | biological_process | The addition of a methyl group onto a nitrogen atom of an arginine residue in a protein. [GOC:bf]
93 | GO:0042753 | 0.0292070870900016 | positive regulation of circadian rhythm | biological_process | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
93 | GO:0046459 | 0.0292070870900016 | short-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids with a chain length of less than C6. [[NAME], ISBN:[PHONE]]
93 | GO:0046487 | 0.0292070870900016 | glyoxylate metabolic process | biological_process | The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH. [ISBN:[PHONE]]
93 | GO:0009863 | 0.0294290830514719 | salicylic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by salicylic acid. [GOC:jy]
93 | GO:0071446 | 0.0294290830514719 | cellular response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:mah]
93 | GO:0006635 | 0.0309036034970999 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
93 | GO:0019395 | 0.0309036034970999 | fatty acid oxidation | biological_process | The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [ISBN:[PHONE], MetaCyc:FAO-PWY]
93 | GO:0009611 | 0.0313376693656703 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
93 | GO:0016579 | 0.034250368685977 | protein deubiquitination | biological_process | The removal of one or more ubiquitin groups from a protein. [GOC:ai]
93 | GO:0034440 | 0.0359953519512349 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
93 | GO:0006928 | 0.0374996763814096 | cellular component movement | biological_process | The directed, self-propelled movement of a cellular component without the involvement of an external agent such as a transporter or a pore. [GOC:dgh, GOC:dph, GOC:jl, GOC:mlg]
93 | GO:0030048 | 0.0374996763814096 | [NAME]-based movement | biological_process | Movement of organelles or other particles along actin filaments, or sliding of actin filaments past each other, mediated by motor proteins. [GOC:BHF, GOC:mah]
93 | GO:0032446 | 0.0386235654510238 | protein modification by small protein conjugation | biological_process | A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to a target protein. [GOC:mah]
93 | [NAME] | 0.0408621859328853 | transcription from RNA polymerase II promoter | biological_process | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger [NAME] (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:[PHONE]]
93 | GO:0051321 | 0.0408621859328853 | meiotic cell cycle | biological_process | Progression through the phases of the meiotic cell cycle, in which canonically a cell replicates to produce four offspring with half the chromosomal content of the progenitor cell. [GOC:ai]
93 | GO:0044282 | 0.0414569851514561 | small molecule catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of small molecules, any low molecular weight, monomeric, non-encoded molecule. [GOC:curators, GOC:vw]
93 | GO:0044712 | 0.0414569851514561 | single-organism catabolic process | biological_process | A catabolic process - chemical reactions and pathways resulting in the breakdown of substances - which involves a single organism. [GOC:jl]
93 | GO:0000186 | 0.0434925874079477 | activation of MAPKK activity | biological_process | The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK). [PMID:9561267]
93 | GO:0007569 | 0.0434925874079477 | cell aging | biological_process | An aging process that has as participant a cell after a cell has stopped dividing. Cell aging may occur when a cell has temporarily stopped dividing through cell cycle arrest (GO:0007050) or when a cell has permanently stopped dividing, in which case it is undergoing cellular senescence (GO:0090398). May precede cell death (GO:0008219) and succeed cell maturation (GO:0048469). [GOC:PO_curators]
93 | GO:0010018 | 0.0434925874079477 | far-red light signaling pathway | biological_process | The series of molecular signals initiated upon sensing of far red light by a photoreceptor molecule. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:lr, GOC:mtg_far_red, GOC:sm]
93 | GO:0010345 | 0.0434925874079477 | suberin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262]
93 | GO:0015868 | 0.0434925874079477 | purine ribonucleotide transport | biological_process | The directed movement of a purine ribonucleotide, any compound consisting of a purine ribonucleoside (a purine organic base attached to a ribose sugar) esterified with (ortho)phosphate, into, out of or within a cell. [GOC:ai]
93 | GO:0043966 | 0.0434925874079477 | histone H3 acetylation | biological_process | The modification of histone H3 by the addition of an acetyl group. [GOC:jl]
93 | GO:0045117 | 0.0434925874079477 | azole transport | biological_process | The directed movement of azoles, heterocyclic compounds found in many biologically important substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE], Wikipedia:Azole]
93 | [NAME] | 0.0434925874079477 | chorismate metabolic process | biological_process | The chemical reactions and pathways involving chorismate, the anion of (3R-trans)-3-((1-carboxyethenyl)oxy)-4-hydroxy-1,5-cyclohexadiene-1-carboxylic acid. [ISBN:[PHONE]]
93 | GO:0051180 | 0.0434925874079477 | vitamin transport | biological_process | The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. [GOC:ai]
93 | GO:0060771 | 0.0434925874079477 | phyllotactic patterning | biological_process | The radial pattern formation process that results in the formation of leaf or flower primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
93 | GO:0060772 | 0.0434925874079477 | leaf phyllotactic patterning | biological_process | The radial pattern formation process that results in the formation of leaf primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
93 | GO:0060774 | 0.0434925874079477 | auxin mediated signaling pathway involved in phyllotactic patterning | biological_process | The series of molecular signals generated in response to detection of auxin that contributes to the radial pattern formation process resulting in the formation of leaf or flower primordia around the center of a shoot apical meristem. [GOC:dph, GOC:sdb_2009, GOC:tb]
93 | GO:0072348 | 0.0434925874079477 | sulfur compound transport | biological_process | The directed movement of compounds that contain sulfur, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
93 | GO:0080024 | 0.0434925874079477 | [NAME] process | biological_process | The chemical reactions and pathways involving indolebutyric acid, a compound that serves as an active or storage form of the hormone indole-3-acetic acid (an auxin) in many plants. [PMID:18725356]
93 | GO:0090342 | 0.0434925874079477 | regulation of cell aging | biological_process | Any process that modulates the rate, frequency, or extent of cell aging. Cell aging is the progression of the cell from its inception to the end of its lifespan. [GOC:BHF, GOC:dph, GOC:tb]
93 | GO:0000724 | 0.0443339426158774 | double-strand break repair via homologous recombination | biological_process | The error-free repair of a double-strand break in DNA in which the broken DNA molecule is repaired using homologous sequences. A strand in the broken DNA searches for a homologous region in an intact chromosome to serve as the template for DNA synthesis. The restoration of two intact DNA molecules results in the exchange, reciprocal or nonreciprocal, of genetic material between the intact DNA molecule and the broken DNA molecule. [GOC:elh, PMID:10357855]
93 | GO:0000725 | 0.0443339426158774 | recombinational repair | biological_process | A DNA repair process that involves the exchange, reciprocal or nonreciprocal, of genetic material between the broken DNA molecule and a homologous region of DNA. [GOC:elh]
93 | GO:0009695 | 0.0445956185984288 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
93 | GO:0009867 | 0.0475565073945568 | [NAME] mediated signaling pathway | biological_process | A series of molecular signals mediated by [NAME]. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
93 | GO:0071395 | 0.0475565073945568 | cellular response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:mah]
93 | GO:0009967 | 0.047911081329863 | positive regulation of signal transduction | biological_process | Any process that activates or increases the frequency, rate or extent of signal transduction. [GOC:sm]
93 | GO:0010647 | 0.047911081329863 | positive regulation of cell communication | biological_process | Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. [GOC:dph, GOC:tb]
93 | GO:0023056 | 0.047911081329863 | positive regulation of signaling | biological_process | Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. [GOC:mtg_signal]
94 | GO:0010398 | 0.00351774864087956 | xylogalacturonan metabolic process | biological_process | The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues. [GOC:tair_curators]
94 | GO:0010478 | 0.00351774864087956 | chlororespiration | biological_process | A respiratory electron flow (from NAD(P)H to plastoquinone (PQ) and [NAME]) involving both a nonphotochemical reduction and re-oxidation of PQ pool. [GOC:mtg_electron_transport, GOC:tb, PMID:17573537]
94 | GO:0033611 | 0.00351774864087956 | oxalate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of oxalate, the organic acid ethanedioate. [CHEBI:30623, GOC:mlg]
94 | GO:0010029 | 0.00422498917668998 | regulation of seed germination | biological_process | Any process that modulates the frequency, rate or extent of seed germination. [GOC:sm]
94 | GO:0071786 | 0.00702368331701743 | endoplasmic reticulum tubular network organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that comprises the membranes with high curvature in cross-section. [GOC:vw, PMID:16469703, PMID:20434336]
94 | GO:0009620 | 0.0154464674691147 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
94 | GO:0043069 | 0.0179069103874434 | negative regulation of programmed cell death | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
94 | GO:0060548 | 0.0190714541041203 | negative regulation of cell death | biological_process | Any process that decreases the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. [GOC:BHF, GOC:dph, GOC:tb]
94 | GO:0010030 | 0.0209300365051758 | positive regulation of seed germination | biological_process | Any process that activates or increase the rate of seed germination. [GOC:sm]
94 | GO:0010189 | 0.0243774659541835 | vitamin E biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:mg]
94 | GO:0010214 | 0.0243774659541835 | seed coat development | biological_process | The process whose specific outcome is the progression of the seed coat over time, from its formation to the mature structure. [GOC:go_curators]
94 | GO:0042360 | 0.0243774659541835 | vitamin E metabolic process | biological_process | The chemical reactions and pathways involving vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:jl, ISBN:[PHONE]]
94 | GO:0006775 | 0.0278133064774873 | fat-soluble vitamin metabolic process | biological_process | The chemical reactions and pathways involving of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water. [GOC:jl, ISBN:[PHONE]]
94 | GO:0042362 | 0.0278133064774873 | fat-soluble vitamin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water. [GOC:jl, ISBN:[PHONE]]
94 | GO:0045489 | 0.0278133064774873 | pectin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668]
94 | GO:0009788 | 0.0414415197889059 | negative regulation of abscisic acid mediated signaling pathway | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid. [GOC:lr]
94 | GO:1901420 | 0.0414415197889059 | negative regulation of response to alcohol | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of response to alcohol. [GOC:mengo_curators, GOC:TermGenie]
94 | GO:0006979 | 0.0441772651975977 | response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731]
95 | GO:0006012 | 0.000760119279714073 | galactose metabolic process | biological_process | The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose. [ISBN:[PHONE]]
95 | GO:0010398 | 0.00383754397185152 | xylogalacturonan metabolic process | biological_process | The chemical reactions and pathways involving xylogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues substituted on C-3 with beta-D-xylopyranose residues. [GOC:tair_curators]
95 | GO:0080148 | 0.00766097255725509 | negative regulation of response to water deprivation | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to water deprivation. Response to water deprivation is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [PMID:18835996]
95 | GO:0010189 | 0.0265681173182736 | vitamin E biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:mg]
95 | GO:0042360 | 0.0265681173182736 | vitamin E metabolic process | biological_process | The chemical reactions and pathways involving vitamin E, tocopherol, which includes a series of eight structurally similar compounds. Alpha-tocopherol is the most active form in humans and is a powerful biological antioxidant. [GOC:jl, ISBN:[PHONE]]
95 | GO:0006775 | 0.0303078908390878 | fat-soluble vitamin metabolic process | biological_process | The chemical reactions and pathways involving of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water. [GOC:jl, ISBN:[PHONE]]
95 | GO:0042362 | 0.0303078908390878 | fat-soluble vitamin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in organic solvents and relatively insoluble in water. [GOC:jl, ISBN:[PHONE]]
95 | GO:0045489 | 0.0303078908390878 | pectin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pectin, a polymer containing a backbone of alpha-1,4-linked D-galacturonic acid residues. [GOC:go_curators, PMID:11931668]
95 | GO:0005992 | 0.0340338931798052 | trehalose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:[PHONE]]
95 | GO:0005991 | 0.0377461728537251 | [NAME] process | biological_process | The chemical reactions and pathways involving trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:[PHONE]]
96 | GO:0015996 | 0.0044752462202454 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
96 | GO:0005985 | 0.00467405256994584 | sucrose metabolic process | biological_process | The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside. [GOC:go_curators]
96 | GO:0010167 | 0.00625191270255065 | response to nitrate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrate stimulus. [GOC:sm]
96 | GO:0015706 | 0.00675280194370459 | nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
96 | GO:0006059 | 0.0105532459226368 | hexitol metabolic process | biological_process | The chemical reactions and pathways involving hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
96 | GO:0010133 | 0.0105532459226368 | proline catabolic process to glutamate | biological_process | The chemical reactions and pathways resulting in the breakdown of proline into other compounds, including glutamate. [GOC:pz]
96 | GO:0019401 | 0.0105532459226368 | alditol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
96 | GO:0019406 | 0.0105532459226368 | hexitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of hexitols, any alditol with a chain of six carbon atoms in the molecule. [ISBN:[PHONE]]
96 | GO:0019593 | 0.0105532459226368 | mannitol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
96 | GO:0019594 | 0.0105532459226368 | mannitol metabolic process | biological_process | The chemical reactions and pathways involving mannitol, the alditol derived from D-mannose by reduction of the aldehyde group. [ISBN:[PHONE]]
96 | GO:0048700 | 0.0105532459226368 | acquisition of desiccation tolerance in seed | biological_process | The process in which a seed acquires tolerance to severe drying, before entering into a dry, either dormant or quiescent state. [GOC:jid, GOC:ki, GOC:PO_curators, ISBN:[PHONE]]
96 | GO:0071435 | 0.0105532459226368 | potassium ion export | biological_process | The directed movement of potassium ions out of a cell or organelle. [GOC:mah]
96 | GO:0097439 | 0.0105532459226368 | acquisition of desiccation tolerance | biological_process | The process in which tolerance to severe drying is acquired, before entering into a dry, either dormant or quiescent state. [GOC:PO_curators]
96 | GO:0019751 | 0.0130779516322388 | polyol metabolic process | biological_process | The chemical reactions and pathways involving a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. [CHEBI:26191, GOC:go_curators]
96 | GO:0000038 | 0.0134701939642843 | very long-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving a fatty acid which has a chain length greater than C22. [CHEBI:27283, GOC:hjd]
96 | GO:0006471 | 0.0209967907440861 | protein ADP-ribosylation | biological_process | The transfer, from NAD, of ADP-ribose to protein amino acids. [GOC:pr, RESID:AA0040, RESID:AA0168, RESID:AA0169, RESID:AA0231, RESID:AA0237, RESID:AA0295]
96 | GO:0006562 | 0.0209967907440861 | proline catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
96 | GO:0071786 | 0.0209967907440861 | endoplasmic reticulum tubular network organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum (ER) tubular network. The ER tubular network is the ER part that comprises the membranes with high curvature in cross-section. [GOC:vw, PMID:16469703, PMID:20434336]
96 | GO:0080036 | 0.0209967907440861 | regulation of cytokinin mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of signal transduction mediated by cytokinin. [GOC:dhl]
96 | GO:0007029 | 0.0313317574447068 | endoplasmic reticulum organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum. [GOC:dph, GOC:jl, GOC:mah]
96 | GO:0070574 | 0.0313317574447068 | cadmium ion transmembrane transport | biological_process | A process in which a cadmium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
96 | GO:0033993 | 0.0400339358852814 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
96 | GO:0009737 | 0.0414539420121931 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
96 | GO:0006677 | 0.0415592576859561 | glycosylceramide metabolic process | biological_process | The chemical reactions and pathways involving glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai, ISBN:[PHONE]]
96 | GO:0006687 | 0.0415592576859561 | glycosphingolipid metabolic process | biological_process | The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
96 | GO:0006935 | 0.0415592576859561 | chemotaxis | biological_process | The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). [ISBN:[PHONE]]
96 | GO:0009831 | 0.0415592576859561 | plant-type cell wall modification involved in multidimensional cell growth | biological_process | The series of events that occur during cell growth that result in chemical or structural changes to existing cell walls of the type composed chiefly of cellulose and pectin. An example of this is found in Arabidopsis thaliana. [GOC:lr, GOC:mtg_sensu]
96 | GO:0010183 | 0.0415592576859561 | [NAME] | biological_process | The process in which the growth of pollen tube is directed towards the female gametophyte. [GOC:lr]
96 | GO:0010236 | 0.0415592576859561 | plastoquinone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of plastoquinone, a lipid-soluble electron-transporting coenzyme present in the chloroplast. [GOC:sm]
96 | GO:0016137 | 0.0415592576859561 | glycoside metabolic process | biological_process | The chemical reactions and pathways involving glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [ISBN:[PHONE]]
96 | GO:0016139 | 0.0415592576859561 | glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [GOC:go_curators]
96 | GO:0019377 | 0.0415592576859561 | glycolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
96 | GO:0042330 | 0.0415592576859561 | taxis | biological_process | The directed movement of a motile cell or organism in response to an external stimulus. [GOC:jl, ISBN:[PHONE]]
96 | GO:0046477 | 0.0415592576859561 | glycosylceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai]
96 | GO:0046479 | 0.0415592576859561 | glycosphingolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
96 | GO:0046514 | 0.0415592576859561 | ceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid. [GOC:ai]
96 | GO:0050918 | 0.0415592576859561 | positive chemotaxis | biological_process | The directed movement of a motile cell or organism towards a higher concentration of a chemical. [GOC:ai, GOC:bf, GOC:isa_complete]
96 | GO:0046173 | 0.041911337156232 | polyol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a polyol, any alcohol containing three or more hydroxyl groups attached to saturated carbon atoms. [CHEBI:26191]
96 | GO:0006631 | 0.0475602742267017 | fatty acid metabolic process | biological_process | The chemical reactions and pathways involving fatty acids, aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [ISBN:[PHONE]]
97 | GO:0009962 | 0.00279126712252165 | regulation of flavonoid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
97 | GO:0031537 | 0.00347783866875101 | regulation of anthocyanin metabolic process | biological_process | Any process that modulates the frequency, rate or extent of chemical reactions and pathways involving anthocyanins. [GOC:mah]
97 | GO:0045087 | 0.00633072550386687 | innate immune response | biological_process | Innate immune responses are defense responses mediated by germline encoded components that directly recognize components of potential pathogens. [GO_REF:0000022, GOC:add, GOC:ebc, GOC:mtg_15nov05, GOC:mtg_sensu]
97 | GO:0009715 | 0.00751519027820603 | chalcone biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chalcone, [NAME] ketone or its hydroxylated derivatives. [GOC:go_curators]
97 | GO:0009759 | 0.00751519027820603 | indole glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [GOC:ai]
97 | GO:0009964 | 0.00751519027820603 | negative regulation of flavonoid biosynthetic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
97 | GO:0031054 | 0.00751519027820603 | pre-miRNA processing | biological_process | Any process involved in the conversion of a pre-microRNA transcript into a mature microRNA molecule. [GOC:sl, PMID:15211354]
97 | GO:0035279 | 0.00751519027820603 | mRNA cleavage involved in gene silencing by miRNA | biological_process | The process in which microRNAs (miRNAs) direct the cleavage of target mRNAs. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically direct cleavage by base pairing with near-perfect complementarity to the target mRNA. Many plant miRNAs downregulate gene expression through this mechanism. [GOC:dph, GOC:mtg_lung, PMID:14744438, PMID:15196554]
97 | GO:0042178 | 0.00751519027820603 | xenobiotic catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide. [GOC:jl]
97 | GO:1900865 | 0.00751519027820603 | chloroplast RNA modification | biological_process | Any RNA modification that takes place in chloroplast. [GOC:TermGenie]
97 | GO:0010363 | 0.0118385076117041 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
97 | GO:0048583 | 0.0122814489160447 | regulation of response to stimulus | biological_process | Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
97 | [NAME] | 0.0125283300319818 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
97 | GO:0080135 | 0.0125283300319818 | regulation of cellular response to stress | biological_process | Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
97 | GO:0080134 | 0.0125661202154394 | regulation of response to stress | biological_process | Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
97 | GO:0000412 | 0.0149750952928329 | histone peptidyl-prolyl isomerization | biological_process | The modification of a histone by cis-trans isomerization of a proline residue. [GOC:krc]
97 | GO:0006471 | 0.0149750952928329 | protein ADP-ribosylation | biological_process | The transfer, from NAD, of ADP-ribose to protein amino acids. [GOC:pr, RESID:AA0040, RESID:AA0168, RESID:AA0169, RESID:AA0231, RESID:AA0237, RESID:AA0295]
97 | GO:0010589 | 0.0149750952928329 | leaf proximal/distal pattern formation | biological_process | The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis. [PMID:18398054]
97 | GO:0080036 | 0.0149750952928329 | regulation of cytokinin mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of signal transduction mediated by cytokinin. [GOC:dhl]
97 | GO:0052542 | 0.0160191906802643 | defense response by callose deposition | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
97 | GO:0043067 | 0.016364421479485 | regulation of programmed cell death | biological_process | Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
97 | GO:0009626 | 0.0176445945444213 | plant-type hypersensitive response | biological_process | The rapid, localized death of plant cells in response to invasion by a pathogen. [[NAME]]
97 | GO:0010941 | 0.0176445945444213 | regulation of cell death | biological_process | Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. [GOC:dph, GOC:tb]
97 | GO:0034050 | 0.0176445945444213 | host programmed cell death induced by symbiont | biological_process | Cell death in a host resulting from activation of host endogenous cellular processes after direct or indirect interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). An example of direct interaction is contact with penetrating hyphae of a fungus; an example of indirect interaction is encountering symbiont-secreted molecules. [GOC:pamgo_curators]
97 | GO:0045088 | 0.0180849003891994 | regulation of innate immune response | biological_process | Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection. [GOC:ebc]
97 | GO:0050776 | 0.0185320487054711 | regulation of immune response | biological_process | Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. [GOC:ai]
97 | GO:0002682 | 0.0189860694293602 | regulation of immune system process | biological_process | Any process that modulates the frequency, rate, or extent of an immune system process. [GOC:add]
97 | GO:0015698 | 0.0197427253472525 | inorganic anion transport | biological_process | The directed movement of inorganic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage. [GOC:krc]
97 | GO:0009643 | 0.022380112970746 | photosynthetic acclimation | biological_process | A response to light intensity in which exposure to medium-intensity light results in increased tolerance to high-intensity light. [GOC:mah, PMID:11069694]
97 | GO:0047484 | 0.022380112970746 | regulation of response to osmotic stress | biological_process | Any process that modulates the rate or extent of the response to osmotic stress. [GOC:ai]
97 | GO:0048830 | 0.022380112970746 | adventitious root development | biological_process | The process whose specific outcome is the progression of adventitious root over time, from its formation to the mature structure. Adventitious roots are post-embryonic roots that develop from the plant shoot. [GOC:tb]
97 | GO:0080027 | 0.022380112970746 | response to herbivore | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a herbivore. [PMID:18987211]
97 | GO:0090322 | 0.022380112970746 | regulation of superoxide metabolic process | biological_process | Any process that modulates the rate, frequency, or extent of superoxide metabolism, the chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. [GOC:tb]
97 | GO:0031328 | 0.0241833231785089 | positive regulation of cellular biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
97 | GO:0009891 | 0.0246036338325712 | positive regulation of biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
97 | [NAME] | 0.0251239515306844 | cellular macromolecule localization | biological_process | Any process in which a macromolecule is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell. [GOC:mah]
97 | GO:0009963 | 0.025174691312349 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
97 | GO:0012501 | 0.0272066393332377 | programmed cell death | biological_process | A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell. [GOC:lr, GOC:mtg_apoptosis]
97 | GO:0033037 | 0.0281018414618069 | polysaccharide localization | biological_process | Any process in which a polysaccharide is transported to, or maintained in, a specific location. [GOC:mah]
97 | GO:0052545 | 0.0281018414618069 | callose localization | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location. [NAME] is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06, http://www.onelook.com]
97 | GO:0006677 | 0.0297306384371466 | glycosylceramide metabolic process | biological_process | The chemical reactions and pathways involving glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai, ISBN:[PHONE]]
97 | GO:0006687 | 0.0297306384371466 | glycosphingolipid metabolic process | biological_process | The chemical reactions and pathways involving glycosphingolipids, any compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
97 | GO:0009682 | 0.0297306384371466 | induced systemic resistance | biological_process | A response to non-pathogenic bacteria that confers broad spectrum systemic resistance to disease that does not depend upon salicylic acid signaling. [PMID:10234273]
97 | GO:0016137 | 0.0297306384371466 | glycoside metabolic process | biological_process | The chemical reactions and pathways involving glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [ISBN:[PHONE]]
97 | GO:0016139 | 0.0297306384371466 | glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosides, compounds in which a glycosyl group is substituted into a hydroxyl, thiol or selenol group in another compound. [GOC:go_curators]
97 | GO:0019377 | 0.0297306384371466 | glycolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
97 | GO:0046477 | 0.0297306384371466 | glycosylceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosylceramides, any compound formed by the replacement of the glycosidic hydroxyl group of a cyclic form of a monosaccharide (or derivative) by a ceramide group. [GOC:ai]
97 | GO:0046479 | 0.0297306384371466 | glycosphingolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosphingolipid, a compound with residues of sphingoid and at least one monosaccharide. [ISBN:[PHONE]]
97 | GO:0046514 | 0.0297306384371466 | ceramide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of ceramides, any N-acetylated sphingoid. [GOC:ai]
97 | GO:0015706 | 0.0311590284568946 | nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
97 | GO:0033036 | 0.032647154867916 | macromolecule localization | biological_process | Any process in which a macromolecule is transported to, or maintained in, a specific location. [GOC:mah]
97 | GO:0031325 | 0.0335070592190155 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
97 | GO:0051641 | 0.0337087678344654 | cellular localization | biological_process | A localization process that takes place at the cellular level; as a result of a cellular localization process, a substance or cellular entity, such as a protein complex or organelle, is transported to, and/or maintained in, a specific location within or in the membrane of a cell. [GOC:ai, GOC:mah]
97 | GO:0009893 | 0.035075939790583 | positive regulation of metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
97 | GO:0006664 | 0.0359790872358154 | [NAME] process | biological_process | The chemical reactions and pathways involving glycolipids, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). Some substances classified as bacterial glycolipids have the sugar group acylated by one or more fatty acids and the glycerol group may be absent. [CHEBI:33563, ISBN:[PHONE]]
97 | GO:0009311 | 0.0368180704522822 | oligosaccharide metabolic process | biological_process | The chemical reactions and pathways involving oligosaccharides, molecules with between two and (about) 20 monosaccharide residues connected by glycosidic linkages. [ISBN:[PHONE]]
97 | [NAME] | 0.0370270640361381 | ceramide metabolic process | biological_process | The chemical reactions and pathways involving ceramides, any N-acylated sphingoid. [ISBN:[PHONE]]
97 | GO:0009954 | 0.0370270640361381 | proximal/distal pattern formation | biological_process | The regionalization process in which specific areas of cell differentiation are determined along a proximal/distal axis. The proximal/distal axis is defined by a line that runs from main body (proximal end) of an organism outward (distal end). [GOC:dph, GOC:go_curators, GOC:isa_complete]
97 | GO:0030149 | 0.0370270640361381 | sphingolipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of sphingolipids, any of a class of lipids containing the long-chain amine diol sphingosine or a closely related base (a sphingoid). [GOC:mah, ISBN:[PHONE]]
97 | GO:0031540 | 0.0370270640361381 | regulation of anthocyanin biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of anthocyanins. [GOC:mah]
97 | GO:0046466 | 0.0370270640361381 | membrane lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of membrane lipids, any lipid found in or associated with a biological membrane. [GOC:ai]
97 | GO:0008219 | 0.0379772239798113 | cell death | biological_process | Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as \apoptotic bodies\"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo." [GOC:mah, GOC:mtg_apoptosis]
97 | GO:0016265 | 0.0379772239798113 | death | biological_process | A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism. [GOC:mah, ISBN:[PHONE]]
97 | GO:0006081 | 0.0386775407770292 | cellular aldehyde metabolic process | biological_process | The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. [GOC:go_curators, ISBN:[PHONE]]
97 | GO:0008654 | 0.0393853243746079 | phospholipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
97 | GO:0048522 | 0.0413988784606052 | positive regulation of cellular process | biological_process | Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. [GOC:jid]
97 | GO:0016226 | 0.0428209483912324 | iron-sulfur cluster assembly | biological_process | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
97 | GO:0031163 | 0.0428209483912324 | metallo-sulfur cluster assembly | biological_process | The incorporation of a metal and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
97 | GO:0009641 | 0.0442697793486865 | [NAME] | biological_process | Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome. [Wikipedia:Shade_avoidance]
97 | GO:0009735 | 0.0446021151828465 | response to cytokinin stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cytokinin stimulus. [GOC:jl]
97 | GO:0031347 | 0.0453168033843751 | regulation of defense response | biological_process | Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah]
97 | GO:0006605 | 0.047670950121733 | protein targeting | biological_process | The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif. [GOC:ma]
97 | GO:0006644 | 0.048462134352746 | phospholipid metabolic process | biological_process | The chemical reactions and pathways involving phospholipids, any lipid containing phosphoric acid as a mono- or diester. [ISBN:[PHONE]]
98 | GO:0019500 | 0.00495682763034519 | cyanide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of cyanide, NC-, the anion of hydrocyanic acid. Cyanide is a potent inhibitor of respiration. [ISBN:[PHONE]]
98 | GO:0031054 | 0.00495682763034519 | pre-miRNA processing | biological_process | Any process involved in the conversion of a pre-microRNA transcript into a mature microRNA molecule. [GOC:sl, PMID:15211354]
98 | GO:0035279 | 0.00495682763034519 | mRNA cleavage involved in gene silencing by miRNA | biological_process | The process in which microRNAs (miRNAs) direct the cleavage of target mRNAs. Once incorporated into a RNA-induced silencing complex (RISC), a miRNA will typically direct cleavage by base pairing with near-perfect complementarity to the target mRNA. Many plant miRNAs downregulate gene expression through this mechanism. [GOC:dph, GOC:mtg_lung, PMID:14744438, PMID:15196554]
98 | GO:0009813 | 0.00521996285725663 | flavonoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton. [GOC:tair_curators, ISBN:[PHONE]]
98 | GO:0015804 | 0.00664528597806099 | neutral amino acid transport | biological_process | The directed movement of neutral amino acids, amino acids with no net charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
98 | GO:0010589 | 0.0098898739030554 | leaf proximal/distal pattern formation | biological_process | The regionalization process within a leaf by which specific areas of cell differentiation are determined along a proximal/distal axis. [PMID:18398054]
98 | GO:0051410 | 0.0098898739030554 | detoxification of nitrogen compound | biological_process | Any process that reduces or removes the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances. [GOC:ai]
98 | GO:0009963 | 0.0114115307750488 | positive regulation of flavonoid biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
98 | GO:0042435 | 0.012087576529397 | indole-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl]
98 | GO:0042445 | 0.0125459633729931 | hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone. [CHEBI:24621, GOC:jl]
98 | GO:1901607 | 0.0141610577366823 | alpha-amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an alpha-amino acid. [GOC:TermGenie]
98 | [NAME] | 0.0147992491284769 | [NAME] development | biological_process | The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state. [PMID:19675148]
98 | GO:0042430 | 0.0149623932611666 | indole-containing compound metabolic process | biological_process | The chemical reactions and pathways involving compounds that contain an indole (2,3-benzopyrrole) skeleton. [CHEBI:24828, GOC:jl, GOC:mah]
98 | GO:0009962 | 0.0157228851228308 | regulation of flavonoid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of flavonoids. [GOC:tb]
98 | GO:0019344 | 0.0162425423921935 | cysteine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
98 | GO:0042744 | 0.0164997479910786 | hydrogen peroxide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl]
98 | [NAME] | 0.0166425102003179 | [NAME] process | biological_process | The chemical reactions and pathways involving cysteine, 2-amino-3-mercaptopropanoic acid. [GOC:go_curators]
98 | GO:0009070 | 0.0166425102003179 | [NAME] amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
98 | GO:0034754 | 0.0181019081953878 | cellular hormone metabolic process | biological_process | The chemical reactions and pathways involving any hormone, naturally occurring substances secreted by specialized cells that affects the metabolism or behavior of other cells possessing functional receptors for the hormone, as carried out by individual cells. [GOC:mah]
98 | GO:0070301 | 0.0181019081953878 | cellular response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [CHEBI:16240, GOC:mah]
98 | GO:0010394 | 0.0196850631225928 | homogalacturonan metabolic process | biological_process | The chemical reactions and pathways involving homogalacturonan, a pectin characterized by a backbone of alpha-(1->4)-linked D-galacturonic acid residues that can be methyl-esterified at C-6 and carry acetyl groups on O-2 and O-3. [GOC:tair_curators]
98 | GO:0031930 | 0.0196850631225928 | mitochondria-nucleus signaling pathway | biological_process | A series of molecular signals that forms a pathway of communication from the mitochondria to the nucleus and initiates cellular changes in response to changes in mitochondrial function. [GOC:jh, PMID:15068799]
98 | GO:0031328 | 0.0225903672184614 | positive regulation of cellular biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
98 | GO:0009891 | 0.0229259066226166 | positive regulation of biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
98 | GO:0015800 | 0.024547425209466 | [NAME] | biological_process | The directed movement of acidic amino acids, amino acids with a pH below 7, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
98 | GO:0042743 | 0.025815295250381 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
98 | GO:0034614 | 0.0270383593112118 | cellular response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mah]
98 | GO:0009069 | 0.0279193536437058 | [NAME] acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
98 | GO:0031325 | 0.0298924525665951 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
98 | GO:0034599 | 0.0300044392367537 | cellular response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah]
98 | GO:0009893 | 0.0310965677707498 | positive regulation of metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
98 | GO:0008652 | 0.0327468150021015 | cellular amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents. [ISBN:[PHONE]]
98 | GO:1901605 | 0.0331673959243959 | alpha-amino acid metabolic process | biological_process | The chemical reactions and pathways involving an alpha-amino acid. [GOC:TermGenie]
98 | GO:0000162 | 0.0342022285112126 | tryptophan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid; tryptophan is synthesized from chorismate via anthranilate. [GOC:mah, ISBN:[PHONE], MetaCyc:TRPSYN-PWY]
98 | GO:0046219 | 0.0342022285112126 | indolalkylamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of indolalkylamines, indole or indole derivatives containing a primary, secondary, or tertiary amine group. [[NAME], GOC:curators]
98 | GO:0000097 | 0.0366076790691016 | sulfur amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids containing sulfur, comprising cysteine, methionine and selenocysteine. [GOC:ai]
98 | GO:0072593 | 0.0366076790691016 | reactive oxygen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah]
98 | GO:0006567 | 0.0389948859331954 | threonine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
98 | GO:0009750 | 0.0419113371561844 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
98 | GO:0016144 | 0.0419113371561844 | S-glycoside biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
98 | GO:0019758 | 0.0419113371561844 | glycosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
98 | GO:0019761 | 0.0419113371561844 | glucosinolate biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
98 | GO:0006085 | 0.0437645238673035 | acetyl-CoA biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated. [GOC:go_curators]
98 | GO:0006949 | 0.0437645238673035 | syncytium formation | biological_process | The formation of a syncytium, a mass of cytoplasm containing several nuclei enclosed within a single plasma membrane. Syncytia are normally derived from single cells that fuse or fail to complete cell division. [ISBN:[PHONE]]
98 | GO:0035384 | 0.0437645238673035 | thioester biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a thioester, a compound of general formula RC(=O)SR' in which the linking oxygen in an ester is replaced by a sulfur atom. They are the product of esterification between a carboxylic acid and a thiol. [CHEBI:51277, GOC:bf, http://encyclopedia.thefreedictionary.com/Thioester]
98 | GO:0071616 | 0.0437645238673035 | acyl-CoA biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group. [GOC:cjk]
98 | GO:1901700 | 0.0461614084099272 | response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
98 | GO:0010817 | 0.0465405235989272 | regulation of hormone levels | biological_process | Any process that modulates the levels of hormone within an organism or a tissue. A hormone is any substance formed in very small amounts in one specialized organ or group of cells and carried (sometimes in the bloodstream) to another organ or group of cells in the same organism, upon which it has a specific regulatory action. [GOC:BHF, GOC:dph, GOC:tb]
98 | GO:0006566 | 0.0485112492091791 | [NAME] process | biological_process | The chemical reactions and pathways involving threonine (2-amino-3-hydroxybutyric acid), a polar, uncharged, essential amino acid found in peptide linkage in proteins. [GOC:jl, ISBN:[PHONE]]
99 | GO:0009737 | 0.00199222168870007 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
99 | GO:0009651 | 0.00381612568328156 | response to salt stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
99 | GO:0009414 | 0.00613155784129354 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
99 | GO:0042364 | 0.00699714546494709 | water-soluble vitamin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any of a diverse group of vitamins that are soluble in water. [GOC:jl]
99 | GO:0010157 | 0.00751519027820603 | response to chlorate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chlorate stimulus. [GOC:sm]
99 | GO:0010273 | 0.00751519027820603 | detoxification of copper ion | biological_process | Any process that reduces or removes the toxicity of copper ion. These include transport of copper away from sensitive areas and to compartments or complexes whose purpose is sequestration of copper ion. [PMID:16367966]
99 | GO:0018131 | 0.00751519027820603 | oxazole or thiazole biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of oxazole or thiazole, five-membered heterocyclic ring structures containing an oxygen and a sulfur, respectively, in the 1-position and a nitrogen in the 3-position. [CHEBI:35790, CHEBI:48901, GOC:curators]
99 | GO:0019477 | 0.00751519027820603 | L-lysine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of L-lysine, the L-enantiomer of (S)-2,6-diaminohexanoic acid. [GOC:go_curators, GOC:jsg, GOC:mah]
99 | [NAME] | 0.00751519027820603 | vitamin K biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any of the forms of vitamin K, quinone-derived vitamins which are involved in the synthesis of blood-clotting factors in mammals. [GOC:jl, http://www.dentistry.leeds.ac.uk/biochem/thcme/vitamins.html#k]
99 | GO:0046473 | 0.00751519027820603 | phosphatidic acid metabolic process | biological_process | The chemical reactions and pathways involving phosphatidic acid, any derivative of glycerol phosphate in which both the remaining hydroxyl groups of the glycerol moiety are esterified with fatty acids. [ISBN:[PHONE]]
99 | GO:0071291 | 0.00751519027820603 | cellular response to selenium ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion. [GOC:mah]
99 | GO:0080051 | 0.00751519027820603 | cutin transport | biological_process | The directed movement of cutin into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [NAME], which consists of C16-18 fatty acids, is the major component of the cuticle that covers the plant surface. [PMID:17951461]
99 | GO:0009266 | 0.00905950470476236 | response to temperature stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus. [GOC:hb]
99 | GO:0009228 | 0.0149750952928329 | thiamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. [CHEBI:18385, GOC:jl, ISBN:[PHONE]]
99 | GO:0042724 | 0.0149750952928329 | thiamine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of thiamine (vitamin B1), and related compounds. [CHEBI:26948, GOC:jl]
99 | GO:0009787 | 0.0160191906802643 | regulation of abscisic acid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of signal transduction mediated by abscisic acid. [GOC:lr]
99 | GO:1901419 | 0.0172186917843863 | regulation of response to alcohol | biological_process | Any process that modulates the frequency, rate or extent of response to alcohol. [GOC:mengo_curators, GOC:TermGenie]
99 | GO:0009408 | 0.0189860694293602 | response to heat | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism. [GOC:lr]
99 | GO:0002679 | 0.0210375961359477 | respiratory burst involved in defense response | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [GOC:add, ISBN:[PHONE], PMID:12789499]
99 | GO:0045730 | 0.0210375961359477 | respiratory burst | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [ISBN:[PHONE]]
99 | GO:0006772 | 0.022380112970746 | thiamine metabolic process | biological_process | The chemical reactions and pathways involving thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver. [CHEBI:18385, GOC:jl, ISBN:[PHONE]]
99 | GO:0009704 | 0.022380112970746 | de-etiolation | biological_process | The greening response of plants grown in the dark (etiolated) as a result of chloroplast biogenesis and the accumulation of chlorophyll. [GOC:lr]
99 | GO:0015798 | 0.022380112970746 | myo-inositol transport | biological_process | The directed movement of myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms. [GOC:ai]
99 | GO:0042723 | 0.022380112970746 | thiamine-containing compound metabolic process | biological_process | The chemical reactions and pathways involving thiamine (vitamin B1), and compounds derived from it. [CHEBI:26948, GOC:jl]
99 | GO:0006655 | 0.0223820504579425 | phosphatidylglycerol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. [ISBN:[PHONE]]
99 | GO:0046471 | 0.0223820504579425 | [NAME] process | biological_process | The chemical reactions and pathways involving phosphatidylglycerols, any of a class of phospholipids in which the phosphatidyl group is esterified to the hydroxyl group of glycerol. They are important constituents of cell membranes. [ISBN:[PHONE]]
99 | GO:0006974 | 0.0304918780562152 | response to DNA damage stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to its DNA from environmental insults or errors during metabolism. [GOC:go_curators]
99 | GO:0009738 | 0.0304918780562152 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
99 | GO:0009640 | 0.0313570046831068 | photomorphogenesis | biological_process | The control of plant growth, development, and differentiation by the duration and nature of light, independent of photosynthesis. [GOC:lr]
99 | GO:0009409 | 0.0335070592190155 | response to cold | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:lr]
99 | GO:0000103 | 0.0370270640361381 | sulfate assimilation | biological_process | The pathways by which inorganic sulfate is processed and incorporated into sulfated compounds. [GOC:jl]
99 | GO:0010205 | 0.0370270640361381 | photoinhibition | biological_process | The mechanism by which high light intensity inhibits photosynthesis through inactivation of the D1 protein of photosystem II. [GOC:mtg_electron_transport, PMID:12068126]
99 | GO:0016123 | 0.0370270640361381 | xanthophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids. [GOC:go_curators]
99 | GO:0043155 | 0.0370270640361381 | negative regulation of photosynthesis, light reaction | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the light-dependent reaction of photosynthesis. [GOC:jl]
99 | GO:0071215 | 0.039721165615552 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
99 | GO:0009639 | 0.0408233093793192 | response to red or far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red or far red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:ai, GOC:mtg_far_red]
99 | GO:0003006 | 0.0460481907132516 | developmental process involved in reproduction | biological_process | A developmental process in which a progressive change in the state of some part of an organism specifically contributes to its ability to form offspring. [GOC:dph, GOC:isa_complete]
99 | GO:0006972 | 0.0469360738966202 | hyperosmotic response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell. [GOC:jl, PMID:12142009]
100 | GO:0019288 | 4.89802507086586e-09 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
100 | GO:0045036 | 2.0386930156943e-05 | protein targeting to chloroplast | biological_process | The process of directing proteins towards the chloroplast, usually using signals contained within the protein. Imported proteins are synthesized as cytosolic precursors containing N-terminal uptake-targeting sequences that direct each protein to its correct subcompartment and are subsequently cleaved. [ISBN:[PHONE]]
100 | GO:0006098 | 0.000987105062913713 | pentose-phosphate shunt | biological_process | The process in which glucose is oxidized, coupled to NADPH synthesis. Glucose 6-P is oxidized with the formation of carbon dioxide (CO2), ribulose 5-phosphate and reduced NADP; ribulose 5-P then enters a series of reactions interconverting sugar phosphates. The pentose phosphate pathway is a major source of reducing equivalents for biosynthesis reactions and is also important for the conversion of hexoses to pentoses. [ISBN:[PHONE], MetaCyc:PENTOSE-P-PWY]
100 | GO:0016117 | 0.00161434983404428 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
100 | GO:0009902 | 0.00191352263176844 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
100 | GO:0000023 | 0.00224916652086471 | [NAME] process | biological_process | The chemical reactions and pathways involving the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose), an intermediate in the catabolism of glycogen and starch. [GOC:jl, ISBN:[PHONE]]
100 | GO:0015995 | 0.00275719208481348 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
100 | GO:0006636 | 0.00385879967479369 | unsaturated fatty acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms. [GOC:mah, MetaCyc:PWY-762, MetaCyc:PWY-782]
100 | GO:0034660 | 0.00399673412614139 | [NAME] process | biological_process | The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs). [GOC:mah]
100 | GO:0019252 | 0.00436095299418352 | starch biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of starch, the most important reserve polysaccharide in plants. [GOC:ai]
100 | GO:0016226 | 0.00505813574654235 | iron-sulfur cluster assembly | biological_process | The incorporation of iron and exogenous sulfur into a metallo-sulfur cluster. [GOC:jl, GOC:mah, GOC:pde, GOC:vw]
100 | GO:0009073 | 0.00645957530161136 | aromatic amino acid family biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
100 | GO:0006535 | 0.00799488327470637 | cysteine biosynthetic process from serine | biological_process | The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators]
100 | GO:0043489 | 0.00799488327470637 | RNA stabilization | biological_process | Prevention of degradation of RNA molecules. [GOC:go_curators]
100 | GO:0010027 | 0.00835648592932206 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
100 | GO:0072507 | 0.0130672679356865 | divalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of divalent cations within an organism or cell. [GOC:mah]
100 | GO:0008614 | 0.0159271167364599 | pyridoxine metabolic process | biological_process | The chemical reactions and pathways involving pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. Pyridoxal, pyridoxamine and pyridoxine are collectively known as vitamin [NAME], and are efficiently converted to the biologically active form of vitamin [NAME], pyridoxal phosphate. [CHEBI:16709, GOC:curators]
100 | GO:0008615 | 0.0159271167364599 | pyridoxine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of pyridoxine, 2-methyl-3-hydroxy-4,5-bis(hydroxymethyl)pyridine, one of the vitamin B6 compounds. [GOC:ai]
100 | GO:0018105 | 0.0159271167364599 | peptidyl-serine phosphorylation | biological_process | The phosphorylation of peptidyl-serine to form peptidyl-O-phospho-L-serine. [RESID:AA0037]
100 | GO:0018209 | 0.0159271167364599 | peptidyl-serine modification | biological_process | The modification of peptidyl-serine. [GOC:go_curators]
100 | GO:0035404 | 0.0159271167364599 | histone-serine phosphorylation | biological_process | The modification of histones by addition of a phosphate group to a serine residue. [GOC:bf]
100 | GO:0042816 | 0.0159271167364599 | vitamin B6 metabolic process | biological_process | The chemical reactions and pathways involving any of the vitamin B6 compounds: pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
100 | GO:0042819 | 0.0159271167364599 | vitamin [NAME] biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any of the vitamin B6 compounds; pyridoxal, pyridoxamine and pyridoxine and the active form, pyridoxal phosphate. [GOC:jl, http://www.indstate.edu/thcme/mwking/vitamins.html]
100 | GO:0043987 | 0.0159271167364599 | histone H3-S10 phosphorylation | biological_process | The modification of histone H3 by the addition of an phosphate group to a serine residue at position 10 of the histone. [GOC:jl]
100 | GO:0009069 | 0.0211694151510413 | [NAME] acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the serine family, comprising cysteine, glycine, homoserine, selenocysteine and serine. [GOC:ai]
100 | GO:0006415 | 0.0237971813819843 | translational termination | biological_process | The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). [GOC:hjd, ISBN:019879276X]
100 | GO:0016553 | 0.0237971813819843 | base conversion or substitution editing | biological_process | Any base modification or substitution events that result in alterations in the coding potential or structural properties of RNAs as a result of changes in the base-pairing properties of the modified ribonucleoside(s). [PMID:11092837]
100 | GO:0070574 | 0.0237971813819843 | cadmium ion transmembrane transport | biological_process | A process in which a cadmium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
100 | GO:0042592 | 0.0244414820259945 | homeostatic process | biological_process | Any biological process involved in the maintenance of an internal steady state. [GOC:jl, ISBN:[PHONE]]
100 | GO:0010190 | 0.0316055545911424 | cytochrome b6f complex assembly | biological_process | Formation of cytochrome b6f complex, a complex that transfers electrons from reduced plastoquinone to oxidized plastocyanin and translocates protons from the stroma to the lumen, by the aggregation, arrangement and bonding together of its constituents. [GOC:tb]
100 | GO:0017004 | 0.0316055545911424 | cytochrome complex assembly | biological_process | The aggregation, arrangement and bonding together of a cytochrome complex. A cytochrome complex is a protein complex in which at least one of the proteins is a cytochrome, i.e. a heme-containing protein involved in catalysis of redox reactions. [GOC:jl, GOC:mah]
100 | GO:0032544 | 0.0316055545911424 | plastid translation | biological_process | The chemical reactions and pathways resulting in the formation of a protein in a plastid. This is a ribosome-mediated process in which the information in messenger [NAME] (mRNA) is used to specify the sequence of amino acids in the protein; the plastid has its own ribosomes and transfer RNAs, and uses a genetic code that differs from the nuclear code. [GOC:go_curators]
100 | GO:0043085 | 0.0347476602957638 | positive regulation of catalytic activity | biological_process | Any process that activates or increases the activity of an enzyme. [GOC:jl, GOC:tb]
100 | GO:0009767 | 0.034922383049474 | photosynthetic electron transport chain | biological_process | A process, occurring as part of photosynthesis, in which light provides the energy for a series of electron carriers to operate together to transfer electrons and generate a transmembrane electrochemical gradient. [GOC:mtg_electron_transport, ISBN:[PHONE]]
100 | GO:0044093 | 0.0357345582075341 | positive regulation of molecular function | biological_process | Any process that activates or increases the rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. [GO:jl]
100 | GO:0015691 | 0.0393527101543386 | cadmium ion transport | biological_process | The directed movement of cadmium (Cd) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
100 | GO:0016123 | 0.0393527101543386 | xanthophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of xanthophylls, oxygen-containing carotenoids. [GOC:go_curators]
100 | GO:0072525 | 0.0393527101543386 | pyridine-containing compound biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a pyridine-containing compound, i.e. any compound that contains pyridine or a formal derivative thereof. [CHEBI:26421, GOC:mah]
100 | GO:0042744 | 0.0402873748951387 | hydrogen peroxide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl]
100 | GO:0050801 | 0.0430461261696506 | ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of ions within an organism or cell. [GOC:ai]
100 | GO:0070838 | 0.0430461261696506 | divalent metal ion transport | biological_process | The directed movement of divalent metal cations, any metal ion with a +2 electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
100 | GO:0070301 | 0.04402644157585 | cellular response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [CHEBI:16240, GOC:mah]
100 | GO:0000096 | 0.0444503420602672 | sulfur amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids containing sulfur, comprising cysteine, homocysteine, methionine and selenocysteine. [GOC:ai]
100 | GO:0000302 | 0.0460912964584924 | response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:krc]
100 | GO:0031425 | 0.0470391182986147 | chloroplast RNA processing | biological_process | The conversion of a primary RNA molecule transcribed from a chloroplast genome into one or more mature RNA molecules. [GOC:mah]
100 | GO:0072511 | 0.0475370893136155 | divalent inorganic cation transport | biological_process | The directed movement of inorganic cations with a valency of two into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage. [GOC:mah]
101 | GO:0051051 | 0.000707124750459693 | negative regulation of transport | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
101 | GO:0010200 | 0.00166941841531927 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
101 | GO:0009605 | 0.00621192141822835 | response to external stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an external stimulus. [GOC:hb]
101 | GO:0002213 | 0.00798462967705742 | defense response to insect | biological_process | A response to protect an organism from a directly detected or perceived external threat from an insect or insects to that organism. [GOC:add]
101 | GO:0043269 | 0.00818899974839872 | regulation of ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
101 | GO:0031123 | 0.00988050865092265 | RNA 3'-end processing | biological_process | Any process involved in forming the mature 3' end of an RNA molecule. [GOC:mah]
101 | GO:0002679 | 0.0108433483280932 | respiratory burst involved in defense response | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases made as part of a defense response ; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [GOC:add, ISBN:[PHONE], PMID:12789499]
101 | GO:0045730 | 0.0108433483280932 | respiratory burst | biological_process | A phase of elevated metabolic activity, during which oxygen consumption increases; this leads to the production, by an NADH dependent system, of hydrogen peroxide (H2O2), superoxide anions and hydroxyl radicals. [ISBN:[PHONE]]
101 | [NAME] | 0.0129553259340538 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
101 | GO:0036293 | 0.0140932407217808 | response to decreased oxygen levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen. [GOC:al]
101 | GO:0070482 | 0.0140932407217808 | response to oxygen levels | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. [GOC:BHF, GOC:mah]
101 | GO:0010228 | 0.0151000781389781 | vegetative to reproductive phase transition of meristem | biological_process | The process involved in transforming a meristem that produces vegetative structures, such as leaves, into a meristem that produces reproductive structures, such as a flower or an inflorescence. [GOC:tb]
101 | GO:0002240 | 0.0155100735529369 | response to molecule of oomycetes origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of oomycetes origin. [GOC:rl, GOC:sm]
101 | GO:0006145 | 0.0155100735529369 | purine nucleobase catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [GOC:go_curators]
101 | GO:0007263 | 0.0155100735529369 | nitric oxide mediated signal transduction | biological_process | Any intracellular signal transduction in which the signal is passed on within the cell via nitric oxide (NO). Includes synthesis of nitric oxide, receptors/sensors for nitric oxide (such as soluble guanylyl cyclase/sGC) and downstream effectors that further transmit the signal within the cell. Nitric oxide transmits its downstream effects through either cyclic GMP (cGMP)-dependent or independent mechanisms. [GOC:jl, PMID:21549190]
101 | GO:0010269 | 0.0155100735529369 | response to selenium ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion. [GOC:mg]
101 | GO:0010271 | 0.0155100735529369 | regulation of chlorophyll catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of chlorophyll. [PMID:16361392]
101 | GO:0010602 | 0.0155100735529369 | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | biological_process | Regulation of the chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene ([NAME]), a fruit-ripening hormone in plants. [PMID:18055613]
101 | GO:0034756 | 0.0155100735529369 | regulation of iron ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of iron ions (Fe) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
101 | GO:0034757 | 0.0155100735529369 | negative regulation of iron ion transport | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of iron ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
101 | GO:0042550 | 0.0155100735529369 | photosystem I stabilization | biological_process | The stabilization of the photosystem I protein complex, resulting from the phosphorylation of its structural protein subunits, in a cell actively involved in photosynthesis. [GOC:go_curators]
101 | GO:0043271 | 0.0155100735529369 | negative regulation of ion transport | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
101 | GO:0046110 | 0.0155100735529369 | xanthine metabolic process | biological_process | The chemical reactions and pathways involving xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids. [GOC:go_curators]
101 | GO:0052558 | 0.0155100735529369 | induction by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism activates the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
101 | GO:0052559 | 0.0155100735529369 | induction by symbiont of host immune response | biological_process | Any process in which an organism activates the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0071291 | 0.0155100735529369 | cellular response to selenium ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from selenium ion. [GOC:mah]
101 | GO:0080029 | 0.0155100735529369 | cellular response to boron-containing substance levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of boron-containing substances. [PMID:18952773]
101 | GO:0080117 | 0.0155100735529369 | secondary growth | biological_process | Lateral growth of a plant axis (shoot axis or root) that is an increase in thickness resulting from formation of secondary vascular tissues by the vascular cambium. [ISBN:[PHONE], PMID:19074290, PO:0005598, PO:0025004]
101 | GO:0080169 | 0.0155100735529369 | cellular response to boron-containing substance deprivation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of boron obtained from boron-containing substances. [PMID:20059736]
101 | GO:0080185 | 0.0155100735529369 | effector dependent induction by symbiont of host immune response | biological_process | Any process that involves recognition of an effector, and by which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. Effectors are proteins secreted into the host cell by pathogenic microbes, presumably to alter host immune response signaling. The best characterized effectors are bacterial effectors delivered into the host cell by type III secretion system (TTSS). Effector-triggered immunity (ETI) involves the direct or indirect recognition of an effector protein by the host (for example through plant resistance or R proteins) and subsequent activation of host immune response. [GOC:DHL, PMID:16497589]
101 | GO:0080190 | 0.0155100735529369 | lateral growth | biological_process | Growth of a plant axis (shoot axis or root) that originates from a lateral meristem. [PO:0020145]
101 | GO:1901404 | 0.0155100735529369 | regulation of tetrapyrrole catabolic process | biological_process | Any process that modulates the frequency, rate or extent of tetrapyrrole catabolic process. [GOC:mengo_curators, GOC:TermGenie]
101 | GO:0016071 | 0.0157351671040817 | mRNA metabolic process | biological_process | The chemical reactions and pathways involving mRNA, [NAME], which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. [ISBN:[PHONE]]
101 | GO:0046777 | 0.0188352240123037 | protein autophosphorylation | biological_process | The phosphorylation by a protein of one or more of its own amino acid residues, or residues on an identical protein. [ISBN:[PHONE]]
101 | GO:0045893 | 0.0190412312810501 | positive regulation of transcription, DNA-dependent | biological_process | Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
101 | GO:0051254 | 0.0190412312810501 | positive regulation of RNA metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
101 | GO:0009612 | 0.0191919423403971 | response to mechanical stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a mechanical stimulus. [GOC:hb]
101 | GO:0009873 | 0.0191986994002812 | ethylene mediated signaling pathway | biological_process | A series of molecular signals mediated by ethylene ([NAME]). [GOC:jy]
101 | GO:0010628 | 0.0195802811898992 | positive regulation of gene expression | biological_process | Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
101 | GO:0071369 | 0.0206145908963893 | cellular response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:mah]
101 | GO:0045935 | 0.0206904314398172 | positive regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
101 | GO:0051173 | 0.0218439670951295 | positive regulation of nitrogen compound metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
101 | GO:0010155 | 0.0236145918522399 | regulation of proton transport | biological_process | Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:sm]
101 | GO:0009606 | 0.0239557131700838 | tropism | biological_process | The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it. [GOC:curators, ISBN:[PHONE]]
101 | GO:0006979 | 0.0246188023471302 | response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:jl, PMID:12115731]
101 | GO:0010557 | 0.024922593499038 | positive regulation of macromolecule biosynthetic process | biological_process | Any process that increases the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
101 | GO:0015994 | 0.0285456015988514 | chlorophyll metabolic process | biological_process | The chemical reactions and pathways involving chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment. [GOC:jl]
101 | [NAME] | 0.0307820266737626 | nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay | biological_process | A major pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of ordered steps that includes poly(A) tail shortening and that can regulate mRNA stability. [GOC:jp, GOC:krc]
101 | GO:0000289 | 0.0307820266737626 | nuclear-transcribed mRNA poly(A) tail shortening | biological_process | Shortening of the poly(A) tail of a nuclear-transcribed mRNA from full length to an oligo(A) length. [GOC:krc]
101 | GO:0010036 | 0.0307820266737626 | response to boron-containing substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a boron-containing substance stimulus. [GOC:sm]
101 | GO:0010360 | 0.0307820266737626 | negative regulation of anion channel activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity. [PMID:17319842]
101 | GO:0010361 | 0.0307820266737626 | regulation of anion channel activity by blue light | biological_process | Any process in which blue light modulates the frequency, rate or extent of anion channel activity. [GOC:dph, GOC:tb, PMID:17319842]
101 | GO:0010362 | 0.0307820266737626 | negative regulation of anion channel activity by blue light | biological_process | Any process in which blue light stops, prevents, or reduces the frequency, rate, or extent of the anion channel activity. [PMID:17319842]
101 | GO:0010600 | 0.0307820266737626 | regulation of auxin biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of auxins, plant hormones that regulate aspects of plant growth. [PMID:18287041]
101 | GO:0010618 | 0.0307820266737626 | aerenchyma formation | biological_process | The process that gives rise to aerenchyma, parenchyma tissue containing particularly large intercellular spaces of schizogenous or lysigenous origin. This process pertains to the initial formation of a structure from unspecified parts. [PMID:18055613, PO:0005702]
101 | GO:0032410 | 0.0307820266737626 | negative regulation of transporter activity | biological_process | Any process that stops or reduces the activity of a transporter. [GOC:mah]
101 | GO:0032413 | 0.0307820266737626 | negative regulation of ion transmembrane transporter activity | biological_process | Any process that stops or reduces the activity of an ion transporter. [GOC:mah, GOC:tb]
101 | GO:0042554 | 0.0307820266737626 | superoxide anion generation | biological_process | The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways. [GOC:jl, PMID:12359750]
101 | GO:0042753 | 0.0307820266737626 | positive regulation of circadian rhythm | biological_process | Any process that activates or increases the frequency, rate or extent of a circadian rhythm behavior. [GOC:go_curators]
101 | GO:0042780 | 0.0307820266737626 | tRNA 3'-end processing | biological_process | The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA. [GOC:go_curators]
101 | GO:0006470 | 0.0324222750227049 | protein dephosphorylation | biological_process | The process of removing one or more phosphoric residues from a protein. [GOC:hb]
101 | GO:0000303 | 0.0343029708224259 | response to superoxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a superoxide stimulus. Superoxide is the anion, oxygen-, formed by addition of one electron to dioxygen (O2) or any compound containing the superoxide anion. [GOC:krc, ISBN:[PHONE]]
101 | GO:0000160 | 0.0378489713064202 | phosphorelay signal transduction system | biological_process | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038]
101 | GO:0000956 | 0.0378489713064202 | nuclear-transcribed mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. [GOC:krc]
101 | [NAME] | 0.0378489713064202 | mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of mRNA, [NAME], which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. [ISBN:[PHONE]]
101 | GO:0009611 | 0.0381161956060481 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
101 | GO:0010604 | 0.0384577928013529 | positive regulation of macromolecule metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
101 | GO:0009267 | 0.0394189688694712 | cellular response to starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment. [GOC:jl]
101 | GO:0072330 | 0.0402112912370166 | monocarboxylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
101 | GO:0006778 | 0.040480595144749 | porphyrin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
101 | GO:0033013 | 0.040480595144749 | tetrapyrrole metabolic process | biological_process | The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
101 | GO:0006414 | 0.0412948352528209 | translational elongation | biological_process | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. [GOC:ems]
101 | GO:0016036 | 0.0419587032958146 | cellular response to phosphate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]
101 | GO:0042594 | 0.0424413169318932 | response to starvation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment. [GOC:go_curators]
101 | GO:0006826 | 0.0449745619931461 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
101 | GO:0046885 | 0.0458194776356079 | regulation of hormone biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of hormones. [GOC:ai]
101 | GO:0052031 | 0.0458194776356079 | modulation by symbiont of host defense response | biological_process | Any process in which an organism modulates the frequency, rate or extent of the defense response of its host, the response mounted by the host in response to the presence of the organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0052173 | 0.0458194776356079 | response to defenses of other organism involved in symbiotic interaction | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0052200 | 0.0458194776356079 | response to host defenses | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the defenses of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0052255 | 0.0458194776356079 | modulation by organism of defense response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism modulates the frequency, rate or extent of the defense response of a second organism, the response mounted by that organism in response to the presence of the first organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0052552 | 0.0458194776356079 | modulation by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism modulates the frequency, rate or extent of the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
101 | GO:0052553 | 0.0458194776356079 | modulation by symbiont of host immune response | biological_process | Any process in which an organism modulates the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0052555 | 0.0458194776356079 | positive regulation by organism of immune response of other organism involved in symbiotic interaction | biological_process | Any process in which an organism activates, maintains or increases the frequency, rate or extent of the immune response of a second organism, where the two organisms are in a symbiotic interaction. The immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. [GOC:mtg_pamgo_17jul06]
101 | GO:0052556 | 0.0458194776356079 | positive regulation by symbiont of host immune response | biological_process | Any process in which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0052564 | 0.0458194776356079 | response to immune response of other organism involved in symbiotic interaction | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of a second organism, where the two organisms are in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0052572 | 0.0458194776356079 | response to host immune response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting the immune response of the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:mtg_pamgo_17jul06]
101 | GO:0071324 | 0.0458194776356079 | cellular response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:mah]
101 | GO:0071329 | 0.0458194776356079 | cellular response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:mah]
101 | GO:0075136 | 0.0458194776356079 | response to host | biological_process | Any process that results in a change in state or activity of the symbiont or its cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detecting molecules of its host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction. [GOC:pamgo_curators]
101 | GO:0090354 | 0.0458194776356079 | regulation of auxin metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving auxins, plant hormones that regulate aspects of plant growth. [GOC:tb]
101 | GO:0031669 | 0.0472148388473471 | cellular response to nutrient levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. [GOC:mah]
101 | GO:0000302 | 0.0479342129142841 | response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:krc]
102 | GO:0031348 | 0.00700013559222731 | negative regulation of defense response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. [GOC:mah]
102 | GO:0080185 | 0.00799488327470637 | effector dependent induction by symbiont of host immune response | biological_process | Any process that involves recognition of an effector, and by which an organism activates, maintains or increases the frequency, rate or extent of the immune response of the host organism; the immune response is any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat. The host is defined as the larger of the organisms involved in a symbiotic interaction. Effectors are proteins secreted into the host cell by pathogenic microbes, presumably to alter host immune response signaling. The best characterized effectors are bacterial effectors delivered into the host cell by type III secretion system (TTSS). Effector-triggered immunity (ETI) involves the direct or indirect recognition of an effector protein by the host (for example through plant resistance or R proteins) and subsequent activation of host immune response. [GOC:DHL, PMID:16497589]
102 | GO:1902065 | 0.00799488327470637 | response to L-glutamate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-glutamate stimulus. [GOC:TermGenie, PMID:23574009]
102 | GO:0010044 | 0.0159271167364599 | response to aluminum ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. [GOC:sm]
102 | GO:0010239 | 0.0159271167364599 | chloroplast mRNA processing | biological_process | Steps involved in processing precursor RNAs arising from transcription of operons in the chloroplast genome into mature mRNAs. [GOC:tb, PMID:9648738]
102 | GO:0009658 | 0.0196412338562803 | chloroplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chloroplast. [GOC:jid]
102 | GO:0000186 | 0.0237971813819843 | activation of MAPKK activity | biological_process | The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK). [PMID:9561267]
102 | GO:0015798 | 0.0237971813819843 | myo-inositol transport | biological_process | The directed movement of myo-inositol into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Myo-inositol is 1,2,3,4,5/4,6-cyclohexanehexol, a growth factor for animals and microorganisms. [GOC:ai]
102 | GO:0070574 | 0.0237971813819843 | cadmium ion transmembrane transport | biological_process | A process in which a cadmium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
102 | GO:0033037 | 0.0315154139903371 | polysaccharide localization | biological_process | Any process in which a polysaccharide is transported to, or maintained in, a specific location. [GOC:mah]
102 | GO:0052545 | 0.0315154139903371 | callose localization | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location. [NAME] is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06, http://www.onelook.com]
102 | GO:0043090 | 0.0366774073422809 | amino acid import | biological_process | The directed movement of amino acids into a cell or organelle. [GOC:jl]
102 | GO:0042254 | 0.0389737648092733 | ribosome biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma]
102 | GO:0006879 | 0.0393527101543386 | cellular iron ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell. [GOC:ai, GOC:mah]
102 | GO:0010449 | 0.0393527101543386 | root meristem growth | biological_process | The increase in size or mass of a root meristem, a population of undifferentiated cells in a plant root which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into the growth of the root. [GOC:tb]
102 | GO:0015691 | 0.0393527101543386 | cadmium ion transport | biological_process | The directed movement of cadmium (Cd) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
102 | GO:0019432 | 0.0393527101543386 | triglyceride biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of a triglyceride, any triester of glycerol. [ISBN:[PHONE]]
102 | GO:0022613 | 0.0420524364024261 | ribonucleoprotein complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a complex containing RNA and proteins. Includes the biosynthesis of the constituent RNA and protein molecules, and those macromolecular modifications that are involved in synthesis or assembly of the ribonucleoprotein complex. [GOC:isa_complete, GOC:mah]
102 | GO:0031325 | 0.0422144500141067 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
102 | GO:0009893 | 0.0441415902265254 | positive regulation of metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
102 | GO:0006865 | 0.0452634587998507 | amino acid transport | biological_process | The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
102 | GO:0000041 | 0.0459428675794081 | transition metal ion transport | biological_process | The directed movement of transition metal ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:[PHONE]]
102 | GO:0010020 | 0.0470391182986147 | chloroplast fission | biological_process | The division of a chloroplast within a cell to form two or more separate chloroplast compartments. This division occurs independently of mitosis. [GOC:lr]
102 | GO:0031425 | 0.0470391182986147 | chloroplast RNA processing | biological_process | The conversion of a primary RNA molecule transcribed from a chloroplast genome into one or more mature RNA molecules. [GOC:mah]
102 | GO:0043572 | 0.0470391182986147 | plastid fission | biological_process | The creation of two or more plastids by division of one plastid. A plastid is any member of a family of organelles found in the cytoplasm of plants and some protists, which are membrane-bounded and contain DNA. [GOC:jl]
102 | GO:0046460 | 0.0470391182986147 | neutral lipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of neutral lipids, lipids only soluble in solvents of very low polarity. [GOC:ai]
102 | GO:0046463 | 0.0470391182986147 | acylglycerol biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of acylglycerol, any mono-, di- or triester of glycerol with (one or more) fatty acids. [GOC:ai]
102 | GO:0031399 | 0.0498665706690818 | regulation of protein modification process | biological_process | Any process that modulates the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. [GOC:mah, GOC:tb]
103 | GO:0042538 | 0.00387481029592802 | hyperosmotic salinity response | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, an increase in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment. [GOC:jl]
103 | GO:1901700 | 0.00390343999418812 | response to oxygen-containing compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an oxygen-containing compound stimulus. [GOC:pr, GOC:TermGenie]
103 | GO:0005992 | 0.00422602974702514 | trehalose biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of trehalose, a disaccharide isomeric with sucrose and obtained from certain lichens and fungi. [GOC:jl, ISBN:[PHONE]]
103 | GO:0010286 | 0.00626923288436873 | heat acclimation | biological_process | Any process that increases heat tolerance of an organism in response to high temperatures. [GOC:tair_curators]
103 | GO:0010033 | 0.0105316261536913 | response to organic substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus. [GOC:sm]
103 | GO:0071294 | 0.0111928365846212 | cellular response to zinc ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. [GOC:mah]
103 | GO:0009737 | 0.0179393403324658 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
103 | GO:0033993 | 0.0194806401697781 | response to lipid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a lipid stimulus. [GOC:sl]
103 | GO:0009961 | 0.0222621635379183 | response to 1-aminocyclopropane-1-carboxylic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus. [GOC:jl]
103 | GO:0046653 | 0.0222621635379183 | tetrahydrofolate metabolic process | biological_process | The chemical reactions and pathways involving tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group. [ISBN:[PHONE]]
103 | [NAME] | 0.0222621635379183 | positive regulation of cell division | biological_process | Any process that activates or increases the frequency, rate or extent of cell division. [GOC:ai]
103 | GO:0080175 | 0.0222621635379183 | phragmoplast microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in phragmoplast, a plant cell specific structure that forms during late cytokinesis. Phragmoplast serves as a scaffold for cell plate assembly and subsequent formation of a new cell wall separating the two daughter cells. [PMID:19383896]
103 | GO:0010043 | 0.0226102648139113 | response to zinc ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. [GOC:sm]
103 | GO:0009725 | 0.0254260192390312 | response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:jl]
103 | GO:0009414 | 0.0306165852893813 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
103 | GO:0009415 | 0.0313497980113007 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
103 | GO:0097305 | 0.0315547911628221 | response to alcohol | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
103 | GO:0010507 | 0.0332093242148936 | negative regulation of autophagy | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
103 | GO:0031330 | 0.0332093242148936 | negative regulation of cellular catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. [GOC:mah]
103 | GO:0010035 | 0.0415221936040841 | response to inorganic substance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. [GOC:sm]
103 | GO:0000912 | 0.0440356475721957 | assembly of actomyosin apparatus involved in cytokinesis | biological_process | The assembly and arrangement of an apparatus composed of actin, [NAME], and associated proteins that will function in cytokinesis. [GOC:mtg_cell_cycle]
103 | GO:0000914 | 0.0440356475721957 | phragmoplast assembly | biological_process | The formation of a structure composed of actin, [NAME], and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). [GOC:clt]
103 | GO:0009895 | 0.0440356475721957 | negative regulation of catabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances. [GOC:go_curators]
103 | GO:0010506 | 0.0440356475721957 | regulation of autophagy | biological_process | Any process that modulates the frequency, rate or extent of autophagy. [NAME] is the process in which cells digest parts of their own cytoplasm. [GOC:dph, GOC:tb]
103 | GO:0031032 | 0.0440356475721957 | actomyosin structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and [NAME] or paramyosin. The myosin may be organized into filaments. [GOC:dph, GOC:jl, GOC:mah]
103 | GO:0031146 | 0.0440356475721957 | SCF-dependent proteasomal ubiquitin-dependent protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, with ubiquitin-protein ligation catalyzed by an SCF (Skp1/Cul1/F-box protein) complex, and mediated by the proteasome. [PMID:15380083]
103 | GO:2000377 | 0.0462924950438408 | regulation of reactive oxygen species metabolic process | biological_process | Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
103 | GO:0006970 | 0.0479038268237409 | response to osmotic stress | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of solutes outside the organism or cell. [GOC:jl]
103 | [NAME] | 0.048378465593523 | response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:sm]
103 | [NAME] | 0.0493723777003086 | response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:hjd]
104 | [NAME] | 0.000223544761194979 | [NAME] and ethylene-dependent systemic resistance, ethylene mediated signaling pathway | biological_process | The series of molecular signals mediated by ethylene ([NAME]) involved in jasmonic acid/ethylene dependent systemic resistance. [GOC:jy]
104 | GO:0048610 | 0.00149425704640506 | cellular process involved in reproduction | biological_process | A process, occurring at the cellular level, that is involved in the reproductive function of a multicellular or single-celled organism. [GOC:dph, GOC:jid]
104 | GO:0009902 | 0.00319314368177266 | chloroplast relocation | biological_process | The process in which chloroplasts in photosynthetic cells migrate toward illuminated sites to optimize photosynthesis and move away from excessively illuminated areas to protect the photosynthetic machinery. [PMID:11309623]
104 | GO:0071281 | 0.00446914378952755 | cellular response to iron ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an iron ion stimulus. [GOC:mah]
104 | GO:0015995 | 0.00490551948433358 | chlorophyll biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, from less complex precursors. [GOC:jl]
104 | GO:0009753 | 0.00615911940031278 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
104 | GO:0052544 | 0.00751272914320243 | defense response by callose deposition in cell wall | biological_process | Any process in which callose is transported to, and/or maintained in, the cell wall during the defense response. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06]
104 | GO:0009862 | 0.00756507115607989 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
104 | GO:0009611 | 0.00839445109925118 | response to wounding | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating damage to the organism. [GOC:go_curators]
104 | GO:0008104 | 0.00977685154772895 | [NAME] | biological_process | Any process in which a protein is transported to, or maintained in, a specific location. [GOC:ai]
104 | GO:0034613 | 0.0107858899544178 | cellular protein localization | biological_process | Any process in which a protein is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell. [GOC:mah]
104 | GO:0002237 | 0.0109018954778312 | response to molecule of bacterial origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of bacterial origin such as peptides derived from bacterial flagellin. [GOC:rl, GOC:sm]
104 | GO:0010359 | 0.0112555752318904 | regulation of anion channel activity | biological_process | Any process that modulates the frequency, rate or extent of anion channel activity. [PMID:17319842]
104 | GO:0035303 | 0.0115996952249265 | regulation of dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a molecule. [GOC:bf]
104 | GO:0035304 | 0.0115996952249265 | regulation of protein dephosphorylation | biological_process | Any process that modulates the frequency, rate or extent of removal of phosphate groups from a protein. [GOC:bf]
104 | [NAME] | 0.0119006839325789 | meiotic chromosome segregation | biological_process | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets during M phase of the meiotic cell cycle. [GOC:ai, GOC:mah]
104 | GO:0009867 | 0.0126704270309179 | [NAME] mediated signaling pathway | biological_process | A series of molecular signals mediated by [NAME]. [GOC:jy, PMID:16478936, PMID:19522558, PMID:20159850]
104 | GO:0071395 | 0.0126704270309179 | cellular response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:mah]
104 | GO:0009617 | 0.0136161419383253 | response to bacterium | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a bacterium. [GOC:hb]
104 | GO:0008219 | 0.0136581264463596 | cell death | biological_process | Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as \apoptotic bodies\"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo." [GOC:mah, GOC:mtg_apoptosis]
104 | GO:0016265 | 0.0136581264463596 | death | biological_process | A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism. [GOC:mah, ISBN:[PHONE]]
104 | GO:0031348 | 0.014389305681284 | negative regulation of defense response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. [GOC:mah]
104 | GO:0015031 | 0.01463656623345 | protein transport | biological_process | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
104 | GO:0045184 | 0.01463656623345 | establishment of protein localization | biological_process | The directed movement of a protein to a specific location. [GOC:bf]
104 | GO:0016311 | 0.014921966541676 | dephosphorylation | biological_process | The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. [ISBN:[PHONE]]
104 | GO:0006145 | 0.0150303805564966 | purine nucleobase catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine. [GOC:go_curators]
104 | GO:0009661 | 0.0150303805564966 | chromoplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chromoplast. A chromoplast is a plastid containing pigments other than chlorophyll, usually yellow and orange carotenoid pigments. [GOC:jid]
104 | GO:0009727 | 0.0150303805564966 | detection of ethylene stimulus | biological_process | The series of events in which an ethylene (ethene) stimulus is received by a cell and converted into a molecular signal. [GOC:sm]
104 | GO:0010480 | 0.0150303805564966 | microsporocyte differentiation | biological_process | The process aimed at the progression of a microsporocyte cell over time, from initial commitment of the cell to a specific fate, to the fully functional differentiated cell. A microsporocyte is a diploid (2n) cell that undergoes meiosis and forms four haploid (1n) microspores; also called microspore mother cell and, in seed plants, pollen mother cell. [CL:0000248, PMID:16751349]
104 | GO:0015916 | 0.0150303805564966 | fatty-acyl-CoA transport | biological_process | The directed movement of fatty acyl coenzyme A into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acyl coenzyme A is an acyl group linked to 3'-phosphoadenosine-(5')diphospho(4')pantatheine (coenzyme A). [GOC:ai, ISBN:[PHONE]]
104 | GO:0030974 | 0.0150303805564966 | thiamine pyrophosphate transport | biological_process | The directed movement of thiamine pyrophosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mlg]
104 | GO:0045116 | 0.0150303805564966 | protein neddylation | biological_process | Covalent attachment of the ubiquitin-like protein NEDD8 (RUB1) to another protein. [PMID:11698580]
104 | GO:0046110 | 0.0150303805564966 | xanthine metabolic process | biological_process | The chemical reactions and pathways involving xanthine, 2,6-dihydroxypurine, a purine formed in the metabolic breakdown of guanine but not present in nucleic acids. [GOC:go_curators]
104 | GO:0060964 | 0.0150303805564966 | regulation of gene silencing by miRNA | biological_process | Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [GOC:dph, GOC:tb]
104 | GO:0060966 | 0.0150303805564966 | regulation of gene silencing by RNA | biological_process | Any process that regulates the rate, frequency, or extent of gene silencing by RNA. Gene silencing by RNA is the process in which RNA molecules inactivate expression of target genes. [GOC:dph, GOC:tb]
104 | GO:1901337 | 0.0150303805564966 | thioester transport | biological_process | The directed movement of a thioester into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:TermGenie]
104 | GO:1901535 | 0.0150303805564966 | regulation of DNA demethylation | biological_process | Any process that modulates the frequency, rate or extent of DNA demethylation. [GOC:TermGenie]
104 | GO:1902065 | 0.0150303805564966 | response to L-glutamate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-glutamate stimulus. [GOC:TermGenie, PMID:23574009]
104 | GO:0009628 | 0.0150880247567825 | response to abiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus. [GOC:hb]
104 | GO:0009626 | 0.0151139177435871 | plant-type hypersensitive response | biological_process | The rapid, localized death of plant cells in response to invasion by a pathogen. [[NAME]]
104 | GO:0034050 | 0.0151139177435871 | host programmed cell death induced by symbiont | biological_process | Cell death in a host resulting from activation of host endogenous cellular processes after direct or indirect interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). An example of direct interaction is contact with penetrating hyphae of a fungus; an example of indirect interaction is encountering symbiont-secreted molecules. [GOC:pamgo_curators]
104 | GO:0048585 | 0.0151139177435871 | negative regulation of response to stimulus | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
104 | GO:0022898 | 0.0156541346591218 | regulation of transmembrane transporter activity | biological_process | Any process that modulates the frequency, rate or extent of transmembrane transporter activity. [GOC:dph, GOC:mtg_cardio, GOC:mtg_transport]
104 | GO:0032409 | 0.0156541346591218 | regulation of transporter activity | biological_process | Any process that modulates the activity of a transporter. [GOC:mah]
104 | GO:0032412 | 0.0156541346591218 | regulation of ion transmembrane transporter activity | biological_process | Any process that modulates the activity of an ion transporter. [GOC:mah, GOC:tb]
104 | [NAME] | 0.0163068315348495 | cellular membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
104 | GO:0061024 | 0.0163068315348495 | membrane organization | biological_process | A process which results in the assembly, arrangement of constituent parts, or disassembly of a membrane. A membrane is a double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. [GOC:dph, GOC:tb]
104 | GO:0006605 | 0.016522653925932 | protein targeting | biological_process | The process of targeting specific proteins to particular membrane-bounded subcellular organelles. Usually requires an organelle specific protein sequence motif. [GOC:ma]
104 | GO:0071702 | 0.0173313860930769 | organic substance transport | biological_process | The directed movement of organic substances into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or pore. An organic substance is a molecular entity that contains carbon. [CHEBI:50860, GOC:mah]
104 | GO:0009668 | 0.0175913665235066 | plastid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of either of the lipid bilayers surrounding a plastid. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
104 | GO:0010027 | 0.0175913665235066 | thylakoid membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the thylakoid membrane. [GOC:dph, GOC:jl, GOC:mah, GOC:tb]
104 | GO:0006364 | 0.0178171731495427 | rRNA processing | biological_process | Any process involved in the conversion of a primary ribosomal [NAME] (rRNA) transcript into one or more mature rRNA molecules. [GOC:curators]
104 | GO:0009690 | 0.0180862278141257 | [NAME] process | biological_process | The chemical reactions and pathways involving cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators. [ISBN:[PHONE]]
104 | GO:0031347 | 0.0181932731124052 | regulation of defense response | biological_process | Any process that modulates the frequency, rate or extent of a defense response. [GOC:mah]
104 | GO:0016072 | 0.0183952880592811 | rRNA metabolic process | biological_process | The chemical reactions and pathways involving rRNA, ribosomal RNA, a structural constituent of ribosomes. [ISBN:[PHONE]]
104 | GO:0007126 | 0.0187467406648504 | meiosis | biological_process | A cell cycle process comprising the steps by which a cell progresses through the nuclear division phase of a meiotic cell cycle. A meiotic cell cycle is the specialized nuclear and cell division in which a single diploid cell undergoes two nuclear divisions following a single round of DNA replication in order to produce four daughter cells that contain half the number of chromosomes as the diploid cell. Meiotic division occurs during the formation of gametes from diploid organisms and at the beginning of haplophase in those organisms that alternate between diploid and haploid generations. [GOC:dph, GOC:mah, PMID:9334324]
104 | GO:0031399 | 0.0197231553516363 | regulation of protein modification process | biological_process | Any process that modulates the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. [GOC:mah, GOC:tb]
104 | GO:0007131 | 0.0203378560276893 | reciprocal meiotic recombination | biological_process | The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779]
104 | GO:0035825 | 0.0203378560276893 | reciprocal DNA recombination | biological_process | A DNA recombination process that results in the equal exchange of genetic material between the recombining DNA molecules. [GOC:mah, PMID:11139492, PMID:17304215]
104 | GO:0010304 | 0.0206667889832913 | PSII associated light-harvesting complex II catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of one or more components of the light-harvesting complex of photosystem II. [GOC:mah, PMID:16157880]
104 | GO:0046907 | 0.0211791973622574 | intracellular transport | biological_process | The directed movement of substances within a cell. [GOC:ai]
104 | GO:0007127 | 0.0217524122445571 | meiosis I | biological_process | A cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells. [GOC:dph, GOC:mah, PMID:9334324]
104 | GO:0080134 | 0.0219421890948979 | regulation of response to stress | biological_process | Any process that modulates the frequency, rate or extent of a response to stress. Response to stress is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disturbance in organismal or cellular homeostasis, usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
104 | GO:0044070 | 0.0233909050571909 | regulation of anion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of anions, atoms or small molecules with a net negative charge into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
104 | GO:0072593 | 0.0241878360108761 | reactive oxygen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah]
104 | GO:0006886 | 0.0242484825354374 | intracellular protein transport | biological_process | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. [GOC:mah]
104 | GO:0034660 | 0.0249294723012101 | [NAME] process | biological_process | The chemical reactions and pathways involving non-coding RNA transcripts (ncRNAs). [GOC:mah]
104 | GO:0034470 | 0.0256241919727406 | ncRNA processing | biological_process | Any process that results in the conversion of one or more primary non-coding RNA (ncRNA) transcripts into one or more mature ncRNA molecules. [GOC:mah]
104 | GO:0009625 | 0.0262537743342861 | response to insect | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from an insect. [GOC:hb]
104 | GO:0012501 | 0.0271166237858336 | programmed cell death | biological_process | A process which begins when a cell receives an internal or external signal and activates a series of biochemical events (signaling pathway). The process ends with the death of the cell. [GOC:lr, GOC:mtg_apoptosis]
104 | GO:0031325 | 0.0278645582917207 | positive regulation of cellular metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
104 | GO:0007062 | 0.0279369371554756 | sister chromatid cohesion | biological_process | The cell cycle process in which the sister chromatids of a replicated chromosome are associated with each other. [GOC:jh, GOC:mah, ISBN:[PHONE]]
104 | GO:0035556 | 0.0286659184226239 | intracellular signal transduction | biological_process | The process in which a signal is passed on to downstream components within the cell, which become activated themselves to further propagate the signal and finally trigger a change in the function or state of the cell. [GOC:signaling, ISBN:[PHONE]]
104 | GO:0019220 | 0.0289698809761793 | regulation of phosphate metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphates. [GOC:go_curators]
104 | GO:0051174 | 0.0289698809761793 | regulation of phosphorus metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. [GOC:ai]
104 | GO:0000165 | 0.0293380480794705 | MAPK cascade | biological_process | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP [NAME]-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
104 | GO:0006470 | 0.0293380480794705 | protein dephosphorylation | biological_process | The process of removing one or more phosphoric residues from a protein. [GOC:hb]
104 | GO:0007243 | 0.0293380480794705 | intracellular protein kinase cascade | biological_process | A series of reactions in which a signal is passed on to downstream proteins within the cell by sequential protein phosphorylation and activation of the cascade components. [GOC:bf, GOC:jl, GOC:signaling]
104 | GO:0009893 | 0.0297085524831214 | positive regulation of metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism. [GOC:go_curators]
104 | GO:0001736 | 0.0298372163517552 | establishment of planar polarity | biological_process | Coordinated organization of groups of cells in the plane of an epithelium, such that they all orient to similar coordinates. [GOC:dph]
104 | GO:0001738 | 0.0298372163517552 | morphogenesis of a polarized epithelium | biological_process | The morphogenetic process in which the anatomical structures of a polarized epithelium are generated and organized. A polarized epithelium is an epithelium where the epithelial sheet is oriented with respect to the planar axis. [GOC:dph]
104 | GO:0002009 | 0.0298372163517552 | morphogenesis of an epithelium | biological_process | The process in which the anatomical structures of epithelia are generated and organized. An epithelium consists of closely packed cells arranged in one or more layers, that covers the outer surfaces of the body or lines any internal cavity or tube. [GOC:dph, GOC:jl, GOC:tb, ISBN:[PHONE]]
104 | GO:0006419 | 0.0298372163517552 | alanyl-tRNA aminoacylation | biological_process | The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
104 | GO:0007164 | 0.0298372163517552 | establishment of tissue polarity | biological_process | Coordinated organization of groups of cells in a tissue, such that they all orient to similar coordinates. [GOC:jid]
104 | GO:0009868 | 0.0298372163517552 | [NAME] and ethylene-dependent systemic resistance, [NAME] mediated signaling pathway | biological_process | The series of molecular signals mediated by [NAME] involved in jasmonic acid/ethylene ([NAME]) dependent systemic resistance. [GOC:jy]
104 | GO:0015675 | 0.0298372163517552 | nickel cation transport | biological_process | The directed movement of nickel (Ni) cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
104 | GO:0019287 | 0.0298372163517552 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. [GOC:go_curators, MetaCyc:PWY-922]
104 | GO:0031998 | 0.0298372163517552 | regulation of fatty acid beta-oxidation | biological_process | Any process that modulates the frequency, rate or extent of fatty acid bbeta-oxidation. [GOC:mah]
104 | GO:0032260 | 0.0298372163517552 | response to jasmonic acid stimulus involved in jasmonic acid and ethylene-dependent systemic resistance | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus received in the context of the jasmonic acid- and ethylene (ethene)-dependent process that confers broad spectrum systemic resistance to disease in response to wounding or a pathogen. [GOC:mah]
104 | GO:0035444 | 0.0298372163517552 | nickel cation transmembrane transport | biological_process | The directed movement of nickel (Ni) cations across a membrane by means of some agent such as a transporter or pore. [GOC:vw]
104 | GO:0042554 | 0.0298372163517552 | superoxide anion generation | biological_process | The enzymatic generation of superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species, by a cell in response to environmental stress, thereby mediating the activation of various stress-inducible signaling pathways. [GOC:jl, PMID:12359750]
104 | GO:0046320 | 0.0298372163517552 | regulation of fatty acid oxidation | biological_process | Any process that modulates the frequency, rate or extent of fatty acid oxidation. [GOC:ai]
104 | GO:0048729 | 0.0298372163517552 | tissue morphogenesis | biological_process | The process in which the anatomical structures of a tissue are generated and organized. [GOC:dph, GOC:jid]
104 | [NAME] | 0.0298372163517552 | regulation of posttranscriptional gene silencing | biological_process | Any process that modulates the frequency, rate or extent of the inactivation of gene expression by a posttranscriptional mechanism. [GOC:dph]
104 | GO:0080005 | 0.0298372163517552 | photosystem stoichiometry adjustment | biological_process | Adjustment of Photosystem I/Photosystem II ratio in response to light conditions. The function of photosystem stoichiometry adjustment is to compensate for any deficiency in energy conversion at either photosystem I or photosystem II by increasing the quantity the photosystem that will otherwise become the rate-limiting to overall photosynthesis. [PMID:11607105]
104 | GO:0080093 | 0.0298372163517552 | regulation of photorespiration | biological_process | Any process that modulates the rate, frequency or extent of photorespiration. Photorespiration is a light-dependent catabolic process occurring concomitantly with photosynthesis in plants (especially [NAME] plants) whereby dioxygen (O2) is consumed and carbon dioxide (CO2) is evolved. [GOC:tb]
104 | GO:0080120 | 0.0298372163517552 | CAAX-box protein maturation | biological_process | A series of specific posttranslational modifications to the CAAX box region of CAAX box proteins. CAAX box proteins are eukaryotic proteins that contain a CAAX motif where the C is a cysteine, the two A residues are aliphatic amino acids and the X can be one of several amino acids. The CAAX-box proteins undergo three sequential, enzymatic, post-translational modifications essential to their targeting: First, the proteins are prenylated by one of two prenyltransferases called farnesyltransferase and geranylgeranyltransferase-I. Prenylation results in the covalent attachment of either farnesyl or geranylgeranyl isoprenoid groups to the cysteine in the CAAX box motif. Prenylation is followed by proteolytic removal of the last three amino acids of the protein (AAX). Finally, the newly exposed carboxylate group of the isoprenylcysteine is methylated by an ER-associated prenyl-dependent carboxylmethyltransferase. [PMID:12039957, PMID:17114793, PMID:18641086]
104 | [NAME] | 0.0302023685032984 | cellular macromolecule localization | biological_process | Any process in which a macromolecule is transported to, and/or maintained in, a specific location at the level of a cell. Localization at the cellular level encompasses movement within the cell, from within the cell to the cell surface, or from one location to another at the surface of a cell. [GOC:mah]
104 | GO:0006310 | 0.0305575570486106 | DNA recombination | biological_process | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:[PHONE]]
104 | GO:0048522 | 0.0318081316277833 | positive regulation of cellular process | biological_process | Any process that activates or increases the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level. [GOC:jid]
104 | GO:0065009 | 0.0327927574626931 | regulation of molecular function | biological_process | Any process that modulates the frequency, rate or extent of a molecular function, an elemental biological activity occurring at the molecular level, such as catalysis or binding. [GOC:isa_complete]
104 | GO:0010363 | 0.0329139550792213 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
104 | GO:0010604 | 0.0332177679879231 | positive regulation of macromolecule metabolic process | biological_process | Any process that increases the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
104 | GO:0048518 | 0.0332803300255218 | positive regulation of biological process | biological_process | Any process that activates or increases the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule. [GOC:jid]
104 | GO:0042254 | 0.0336622877367145 | ribosome biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. [GOC:ma]
104 | GO:0042793 | 0.0349597282955419 | transcription from plastid promoter | biological_process | The synthesis of RNA from a plastid DNA template, usually by a specific plastid [NAME] polymerase. [GOC:jl, ISBN:[PHONE]]
104 | [NAME] | 0.035006114986522 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
104 | GO:0080135 | 0.035006114986522 | regulation of cellular response to stress | biological_process | Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
104 | GO:0042138 | 0.0356285099500517 | meiotic DNA double-strand break formation | biological_process | The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I. This results in the initiation of meiotic recombination. [GOC:elh, GOC:jl, PMID:11529427]
104 | GO:0006396 | 0.0358428177800713 | RNA processing | biological_process | Any process involved in the conversion of one or more primary [NAME] transcripts into one or more mature RNA molecules. [GOC:mah]
104 | GO:0022613 | 0.0372902371743775 | ribonucleoprotein complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a complex containing RNA and proteins. Includes the biosynthesis of the constituent RNA and protein molecules, and those macromolecular modifications that are involved in synthesis or assembly of the ribonucleoprotein complex. [GOC:isa_complete, GOC:mah]
104 | GO:0010467 | 0.0374373789813669 | gene expression | biological_process | The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
104 | GO:0009756 | 0.0387819949212933 | carbohydrate mediated signaling | biological_process | A series of molecular signals mediated by the detection of carbohydrate. [GOC:sm]
104 | GO:0010182 | 0.0387819949212933 | sugar mediated signaling pathway | biological_process | The process in which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes. [PMID:9014361]
104 | GO:0005984 | 0.039928769617816 | disaccharide metabolic process | biological_process | The chemical reactions and pathways involving any disaccharide, sugars composed of two monosaccharide units. [GOC:jl, ISBN:01928006X]
104 | GO:0048583 | 0.0402048592022796 | regulation of response to stimulus | biological_process | Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
104 | GO:0007059 | 0.0407699383191785 | chromosome segregation | biological_process | The process in which genetic material, in the form of chromosomes, is organized into specific structures and then physically separated and apportioned to two or more sets. In eukaryotes, chromosome segregation begins with the alignment of chromosomes at the metaphase plate, includes chromosome separation, and ends when chromosomes have completed movement to the spindle poles. [GOC:ai, GOC:mah]
104 | GO:0048869 | 0.0429296509614928 | cellular developmental process | biological_process | A biological process whose specific outcome is the progression of a cell over time from an initial condition to a later condition. [GOC:isa_complete]
104 | GO:0006081 | 0.0431891830943674 | cellular aldehyde metabolic process | biological_process | The chemical reactions and pathways involving aldehydes, any organic compound with the formula R-CH=O, as carried out by individual cells. [GOC:go_curators, ISBN:[PHONE]]
104 | GO:0000186 | 0.0444237969121455 | activation of MAPKK activity | biological_process | The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK). [PMID:9561267]
104 | GO:0015721 | 0.0444237969121455 | bile acid and bile salt transport | biological_process | The directed movement of bile acid and bile salts into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:dph, GOC:krc, PMID:12663868, PMID:14699511]
104 | GO:0016337 | 0.0444237969121455 | cell-cell adhesion | biological_process | The attachment of one cell to another cell via adhesion molecules. [GOC:hb]
104 | GO:0018342 | 0.0444237969121455 | protein prenylation | biological_process | The covalent attachment of a prenyl group to a protein; geranyl, farnesyl, or geranylgeranyl groups may be added. [GOC:di, ISBN:[PHONE]]
104 | GO:0045117 | 0.0444237969121455 | azole transport | biological_process | The directed movement of azoles, heterocyclic compounds found in many biologically important substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE], Wikipedia:Azole]
104 | GO:0051180 | 0.0444237969121455 | vitamin transport | biological_process | The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. [GOC:ai]
104 | GO:0072348 | 0.0444237969121455 | sulfur compound transport | biological_process | The directed movement of compounds that contain sulfur, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
104 | GO:0097354 | 0.0444237969121455 | prenylation | biological_process | The covalent attachment of a prenyl group to a molecule; geranyl, farnesyl, or geranylgeranyl groups may be added. [GOC:di, [NAME], PMID:21351751, PMID:22123822, PMID:22642693, PMID:22660767]
104 | GO:0042743 | 0.0454315982899856 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
104 | GO:0016071 | 0.0466932840385711 | mRNA metabolic process | biological_process | The chemical reactions and pathways involving mRNA, [NAME], which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes. [ISBN:[PHONE]]
104 | GO:0043067 | 0.0466932840385711 | regulation of programmed cell death | biological_process | Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
104 | GO:0008299 | 0.0468956036680034 | isoprenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [ISBN:[PHONE]]
104 | GO:0009695 | 0.047037073012503 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
104 | GO:0009738 | 0.0475222788882833 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
104 | GO:0031328 | 0.0478548209391214 | positive regulation of cellular biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
104 | GO:0032268 | 0.0479757912582922 | regulation of cellular protein metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. [GOC:mah]
104 | GO:0055114 | 0.0480679757377665 | oxidation-reduction process | biological_process | A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons. [GOC:dhl, GOC:ecd, GOC:[NAME], GOC:jid, GOC:mlg, GOC:rph]
104 | GO:0045893 | 0.048531908568765 | positive regulation of transcription, DNA-dependent | biological_process | Any process that activates or increases the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
104 | GO:0051254 | 0.048531908568765 | positive regulation of RNA metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
104 | GO:0009891 | 0.0488265884677589 | positive regulation of biosynthetic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
104 | GO:0071322 | 0.0492259812745536 | cellular response to carbohydrate stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. [GOC:mah]
104 | GO:0010628 | 0.0496476011788434 | positive regulation of gene expression | biological_process | Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA (for protein-coding genes) and the translation of that mRNA into protein. Some protein processing events may be included when they are required to form an active form of a product from an inactive precursor form. [GOC:dph, GOC:tb]
104 | GO:0015979 | 0.0496476011788434 | photosynthesis | biological_process | The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds. [ISBN:[PHONE]]
104 | GO:0009967 | 0.0497980118856444 | positive regulation of signal transduction | biological_process | Any process that activates or increases the frequency, rate or extent of signal transduction. [GOC:sm]
104 | GO:0010647 | 0.0497980118856444 | positive regulation of cell communication | biological_process | Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. [GOC:dph, GOC:tb]
104 | GO:0023056 | 0.0497980118856444 | positive regulation of signaling | biological_process | Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. [GOC:mtg_signal]
105 | GO:0010243 | 0.00358572818290634 | response to organic nitrogen | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. An organic nitrogen compound is formally a compound containing at least one carbon-nitrogen bond. [CHEBI:35352, PMID:9869419]
105 | GO:0007031 | 0.00652171697750526 | peroxisome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah]
105 | GO:0010200 | 0.0119689975645357 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
105 | GO:0000291 | 0.0123121202430355 | nuclear-transcribed mRNA catabolic process, exonucleolytic | biological_process | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 5'-cap or the 3'-poly(A) tail. [GOC:krc]
105 | GO:0010111 | 0.0123121202430355 | glyoxysome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway. [GOC:tb]
105 | GO:0016050 | 0.0123121202430355 | vesicle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle. [GOC:mah]
105 | GO:0030974 | 0.0123121202430355 | thiamine pyrophosphate transport | biological_process | The directed movement of thiamine pyrophosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mlg]
105 | GO:0032527 | 0.0123121202430355 | protein exit from endoplasmic reticulum | biological_process | The directed movement of proteins from the endoplasmic reticulum. [GOC:rb]
105 | GO:0080125 | 0.0123121202430355 | multicellular structure septum development | biological_process | The process whose specific outcome is the progression of the multicellular structure septum over time, from its formation to the mature structure. The multicellular structure septum is the thin partition or membrane that divides a cavity or a mass of tissue. [GOC:dhl]
105 | GO:0080126 | 0.0123121202430355 | ovary septum development | biological_process | The process whose specific outcome is the progression of the ovary septum over time, from its formation to the mature structure. The ovary septum is the thin partition that divides the ovary, the basal portion of a carpel or group of fused carpels, that encloses the ovule(s). [PMID:17855426]
105 | GO:0006635 | 0.0172967106090801 | fatty acid beta-oxidation | biological_process | A fatty acid oxidation process that results in the complete oxidation of a long-chain fatty acid. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and occurs by successive cycles of reactions during each of which the fatty acid is shortened by a two-carbon fragment removed as acetyl coenzyme A; the cycle continues until only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, ISBN:[PHONE], MetaCyc:FAO-PWY]
105 | GO:0019395 | 0.0172967106090801 | fatty acid oxidation | biological_process | The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [ISBN:[PHONE], MetaCyc:FAO-PWY]
105 | GO:0006355 | 0.0178740517946462 | regulation of transcription, DNA-dependent | biological_process | Any process that modulates the frequency, rate or extent of cellular DNA-dependent transcription. [GOC:go_curators, GOC:txnOH]
105 | GO:2001141 | 0.01922492350784 | regulation of RNA biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of RNA biosynthetic process. [GOC:dph]
105 | GO:0051252 | 0.0199293368606087 | regulation of RNA metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA. [GOC:ai]
105 | GO:0034440 | 0.0202925433416918 | lipid oxidation | biological_process | The removal of one or more electrons from a lipid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen. [GOC:BHF, GOC:mah]
105 | GO:0006624 | 0.0244745969326882 | vacuolar protein processing | biological_process | Protein processing that takes place in the vacuole. Most protein processing in the vacuole represents proteolytic cleavage of precursors to form active enzymes. [GOC:mah]
105 | GO:0009961 | 0.0244745969326882 | response to 1-aminocyclopropane-1-carboxylic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus. [GOC:jl]
105 | GO:0010500 | 0.0244745969326882 | transmitting tissue development | biological_process | The process whose specific outcome is the progression of the transmitting tract over time, from its formation to the mature structure. The transmitting tissue is the tissue in the style of a carpel through which the pollen tube grows; it connects the stigma and the inside of ovary. [PMID:17855426]
105 | GO:0010587 | 0.0244745969326882 | miRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. [PMID:17993620]
105 | GO:0048445 | 0.0244745969326882 | carpel morphogenesis | biological_process | The process in which the anatomical structures of the carpel are generated and organized. [GOC:go_curators]
105 | GO:0048462 | 0.0244745969326882 | carpel formation | biological_process | The process that gives rise to the carpel. This process pertains to the initial formation of a structure from unspecified parts. [GOC:jid]
105 | GO:0009738 | 0.0253550833325818 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
105 | GO:0080167 | 0.027070578542437 | response to karrikin | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a karrikin stimulus. Karrikins are signaling molecules in smoke from burning vegetation that trigger seed germination for many angiosperms (flowering plants). [PMID:20351290]
105 | GO:0009695 | 0.0284149390875131 | jasmonic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of [NAME], a fatty acid derivative. [ISBN:[PHONE]]
105 | GO:0009062 | 0.0291184210619644 | fatty acid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes. [GOC:go_curators]
105 | GO:0072329 | 0.0301085043666452 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of monocarboxylic acids, any organic acid containing one carboxyl (-COOH) group. [CHEBI:25384, GOC:mah]
105 | GO:0031326 | 0.0301440534184697 | regulation of cellular biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances, carried out by individual cells. [GOC:mah]
105 | GO:0030258 | 0.0311184102906739 | lipid modification | biological_process | The covalent alteration of one or more fatty acids in a lipid, resulting in a change in the properties of the lipid. [GOC:mah]
105 | GO:0006351 | 0.0313448642499416 | transcription, DNA-dependent | biological_process | The cellular synthesis of RNA on a template of DNA. [GOC:jl, GOC:txnOH]
105 | GO:0009889 | 0.031415287233281 | regulation of biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances. [GOC:go_curators]
105 | GO:2000112 | 0.0344796010677677 | regulation of cellular macromolecule biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of cellular macromolecule biosynthetic process. [GOC:obol]
105 | GO:0032774 | 0.0352067190325639 | RNA biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of RNA, ribonucleic acid, one of the two main type of nucleic acid, consisting of a long, unbranched macromolecule formed from ribonucleotides joined in 3',5'-phosphodiester linkage. Includes polymerization of ribonucleotide monomers. [GOC:mah]
105 | GO:0071215 | 0.03535723114422 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
105 | GO:0010556 | 0.0363186057323927 | regulation of macromolecule biosynthetic process | biological_process | Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass. [GOC:dph, GOC:tb]
105 | GO:0000105 | 0.0364892252176822 | histidine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. [GOC:go_curators]
105 | GO:0006206 | 0.0364892252176822 | [NAME] process | biological_process | The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
105 | GO:0006208 | 0.0364892252176822 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
105 | GO:0006212 | 0.0364892252176822 | uracil catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. [GOC:go_curators]
105 | GO:0006415 | 0.0364892252176822 | translational termination | biological_process | The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code). [GOC:hjd, ISBN:019879276X]
105 | GO:0006547 | 0.0364892252176822 | histidine metabolic process | biological_process | The chemical reactions and pathways involving histidine, 2-amino-3-(1H-imidazol-4-yl)propanoic acid. [GOC:go_curators]
105 | GO:0009075 | 0.0364892252176822 | histidine family amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids of the histidine family. [GOC:ai]
105 | GO:0009076 | 0.0364892252176822 | histidine family amino acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of amino acids of the histidine family. [GOC:ai]
105 | GO:0010031 | 0.0364892252176822 | circumnutation | biological_process | The organismal movement by which the tip of a plant organ follows a spiral pattern as a consequence of growth. [GOC:mtg_MIT_16mar07, ISBN:[PHONE]]
105 | GO:0010586 | 0.0364892252176822 | miRNA metabolic process | biological_process | The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. [PMID:17993620]
105 | GO:0019860 | 0.0364892252176822 | uracil metabolic process | biological_process | The chemical reactions and pathways involving uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. [GOC:go_curators]
105 | GO:0034661 | 0.0364892252176822 | ncRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of non-coding RNA transcripts (ncRNAs). Includes the breakdown of cryptic unstable transcripts (CUTs). [GOC:rb, PMID:18591258]
105 | GO:0045117 | 0.0364892252176822 | azole transport | biological_process | The directed movement of azoles, heterocyclic compounds found in many biologically important substances, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:go_curators, ISBN:[PHONE], Wikipedia:Azole]
105 | GO:0050879 | 0.0364892252176822 | multicellular organismal movement | biological_process | Any physiological process involved in changing the position of a multicellular organism or an anatomical part of a multicellular organism. [GOC:dph, GOC:mtg_muscle, GOC:tb]
105 | GO:0051180 | 0.0364892252176822 | vitamin transport | biological_process | The directed movement of vitamins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A vitamin is one of a number of unrelated organic substances that occur in many foods in small amounts and that are necessary in trace amounts for the normal metabolic functioning of the body. [GOC:ai]
105 | GO:0052803 | 0.0364892252176822 | imidazole-containing compound metabolic process | biological_process | The chemical reactions and pathways involving imidazoles, five-membered organic heterocycle containing two nitrogen atoms at positions 1 and 3, or any of its derivatives; compounds containing an imidazole skeleton. [CHEBI:24780]
105 | GO:0072348 | 0.0364892252176822 | sulfur compound transport | biological_process | The directed movement of compounds that contain sulfur, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
105 | GO:0072529 | 0.0364892252176822 | pyrimidine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. [[NAME], GOC:mah]
105 | GO:0009694 | 0.0372137661218684 | [NAME] process | biological_process | The chemical reactions and pathways involving jasmonic acid, a fatty acid derivative with the formula (1R-(1 alpha, 2 beta(Z)))-3-oxo-2-(2-pentenyl)cyclopentaneacetic acid. [ISBN:[PHONE]]
105 | GO:0044242 | 0.0375966967913463 | cellular lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, as carried out by individual cells. [GOC:jl]
105 | GO:0009620 | 0.0387304719237908 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
105 | GO:0016042 | 0.0387465425158179 | lipid catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. [GOC:go_curators]
105 | GO:0019219 | 0.0390135856274174 | regulation of nucleobase-containing compound metabolic process | biological_process | Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids. [GOC:go_curators]
105 | GO:0009787 | 0.0401903563195426 | regulation of abscisic acid mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of signal transduction mediated by abscisic acid. [GOC:lr]
105 | GO:1901419 | 0.0430660555660207 | regulation of response to alcohol | biological_process | Any process that modulates the frequency, rate or extent of response to alcohol. [GOC:mengo_curators, GOC:TermGenie]
105 | GO:0051171 | 0.0444032002067804 | regulation of nitrogen compound metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nitrogen or nitrogenous compounds. [GOC:ai, GOC:tb]
105 | GO:0006552 | 0.0483577789944042 | leucine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai]
105 | GO:0010143 | 0.0483577789944042 | cutin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:[PHONE]]
105 | GO:0015695 | 0.0483577789944042 | organic cation transport | biological_process | The directed movement of organic cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Organic cations are atoms or small molecules with a positive charge which contain carbon in covalent linkage. [GOC:ai]
105 | GO:0031086 | 0.0483577789944042 | nuclear-transcribed mRNA catabolic process, deadenylation-independent decay | biological_process | A pathway of degradation of nuclear-transcribed mRNAs that proceeds through a series of steps that is independent of deadenylation, but requires decapping followed by transcript decay, and that can regulate mRNA stability. [GOC:krc, PMID:15225542, PMID:15225544]
105 | GO:0031087 | 0.0483577789944042 | deadenylation-independent decapping of nuclear-transcribed mRNA | biological_process | Cleavage of the 5'-cap of a nuclear-transcribed mRNA that is independent of poly(A) tail shortening. [GOC:krc, PMID:15225542, PMID:15225544]
105 | GO:0046113 | 0.0483577789944042 | nucleobase catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid. [GOC:ai]
105 | GO:0071214 | 0.049038243626781 | cellular response to abiotic stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abiotic (non-living) stimulus. [GOC:mah]
106 | GO:0009081 | 0.00603662520419702 | branched-chain amino acid metabolic process | biological_process | The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine. [CHEBI:22918, GOC:ai]
106 | GO:0015996 | 0.00875647380699383 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
106 | GO:0016050 | 0.0134314039016289 | vesicle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle. [GOC:mah]
106 | GO:0031063 | 0.0134314039016289 | regulation of histone deacetylation | biological_process | Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones. [GOC:mah]
106 | GO:0090311 | 0.0134314039016289 | regulation of protein deacetylation | biological_process | Any process that modulates the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. [GOC:tb]
106 | GO:1901684 | 0.0134314039016289 | arsenate ion transmembrane transport | biological_process | The directed movement of arsenate ion across a membrane. [GOC:TermGenie]
106 | GO:0002697 | 0.0266845243353852 | regulation of immune effector process | biological_process | Any process that modulates the frequency, rate, or extent of an immune effector process. [GOC:add]
106 | GO:0050688 | 0.0266845243353852 | regulation of defense response to virus | biological_process | Any process that modulates the frequency, rate or extent of the antiviral response of a cell or organism. [GOC:ai]
106 | GO:0016036 | 0.0291321718567793 | cellular response to phosphate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate. [GOC:jl]
106 | GO:0042743 | 0.0300433288670904 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
106 | GO:0006777 | 0.0397616996324502 | Mo-molybdopterin cofactor biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. [http://www.sunysb.edu/biochem/BIOCHEM/facultypages/schindelin/, ISSN:09498257]
106 | GO:0009970 | 0.0397616996324502 | cellular response to sulfate starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of sulfate. [GOC:sm]
106 | GO:0016559 | 0.0397616996324502 | peroxisome fission | biological_process | The division of a mature peroxisome within a cell to form two or more separate peroxisome compartments. [GOC:mah, PMID:11687502, PMID:14754507]
106 | GO:0019720 | 0.0397616996324502 | Mo-molybdopterin cofactor metabolic process | biological_process | The chemical reactions and pathways involving the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. [http://www.sunysb.edu/biochem/BIOCHEM/facultypages/schindelin/, ISSN:09498257]
106 | GO:0032324 | 0.0397616996324502 | molybdopterin cofactor biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [GOC:mah]
106 | GO:0035435 | 0.0397616996324502 | phosphate ion transmembrane transport | biological_process | The directed movement of phosphate across a membrane by means of some agent such as a transporter or pore. [GOC:vw]
106 | GO:0043545 | 0.0397616996324502 | molybdopterin cofactor metabolic process | biological_process | The chemical reactions and pathways involving the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [ISSN:09498257]
106 | GO:0046864 | 0.0397616996324502 | isoprenoid transport | biological_process | The directed movement of isoprenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Isoprenoids comprise a group of compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues. [GOC:ai]
106 | GO:0046865 | 0.0397616996324502 | terpenoid transport | biological_process | The directed movement of terpenoids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Terpenoids are a class of compounds characterized by an isoprenoid chemical structure and include derivatives with various functional groups. [GOC:ai]
106 | GO:0051189 | 0.0397616996324502 | prosthetic group metabolic process | biological_process | The chemical reactions and pathways involving a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein. [GOC:ai]
106 | GO:0080168 | 0.0397616996324502 | abscisic acid transport | biological_process | The directed movement of abscisic acid into, out of, within or between cells by means of some external agent such as a transporter or pore. [PMID:20133881]
106 | GO:0009753 | 0.0459387509125333 | response to jasmonic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a jasmonic acid stimulus. [GOC:jl]
106 | GO:0007031 | 0.0481994788054048 | peroxisome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah]
106 | GO:0072593 | 0.0493875107057503 | reactive oxygen species metabolic process | biological_process | The chemical reactions and pathways involving a reactive oxygen species, any molecules or ions formed by the incomplete one-electron reduction of oxygen. They contribute to the microbicidal activity of phagocytes, regulation of signal transduction and gene expression, and the oxidative damage to biopolymers. [CHEBI:26523, GOC:mah]
107 | GO:0006446 | 0.00136890550709198 | regulation of translational initiation | biological_process | Any process that modulates the frequency, rate or extent of translational initiation. [GOC:go_curators]
107 | GO:0016560 | 0.00975375759521672 | protein import into peroxisome matrix, docking | biological_process | The process in which a complex formed of a peroxisome targeting sequence (PTS) receptor bound to a PTS-bearing protein docks with translocation machinery in the preoxisomal membrane. [PMID:11687502, PMID:11988772, PMID:14754507]
107 | GO:0018316 | 0.00975375759521672 | peptide cross-linking via L-cystine | biological_process | The oxidation of two peptidyl-cysteine residues to form a peptidyl-L-cystine (dicysteine) in which segments of peptide chain are linked by a disulfide bond; the cross-link may be between different or the same peptide chain. [RESID:AA0025]
107 | GO:0032527 | 0.00975375759521672 | protein exit from endoplasmic reticulum | biological_process | The directed movement of proteins from the endoplasmic reticulum. [GOC:rb]
107 | GO:0060964 | 0.00975375759521672 | regulation of gene silencing by miRNA | biological_process | Any process that modulates the rate, frequency, or extent of the downregulation of gene expression through the action of microRNAs (miRNAs), endogenous 21-24 nucleotide small RNAs processed from stem-loop RNA precursors (pre-miRNAs). Once incorporated into a RNA-induced silencing complex (RISC), miRNAs can downregulate gene expression by either of two posttranscriptional mechanisms: mRNA cleavage or translational repression. [GOC:dph, GOC:tb]
107 | GO:0071454 | 0.00975375759521672 | cellular response to anoxia | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%. [GOC:mah]
107 | GO:0080153 | 0.00975375759521672 | negative regulation of reductive pentose-phosphate cycle | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the reductive pentose-phosphate cycle. [PMID:17031544, PMID:20399532]
107 | GO:1902065 | 0.00975375759521672 | response to L-glutamate | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an L-glutamate stimulus. [GOC:TermGenie, PMID:23574009]
107 | GO:0030968 | 0.0186302762869465 | endoplasmic reticulum unfolded protein response | biological_process | The series of molecular signals generated as a consequence of the presence of unfolded proteins in the endoplasmic reticulum (ER) or other ER-related stress; results in changes in the regulation of transcription and translation. [GOC:mah, PMID:12042763]
107 | GO:0006515 | 0.0194139240411197 | misfolded or incompletely synthesized protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of misfolded or attenuated proteins. [GOC:jl]
107 | GO:0019287 | 0.0194139240411197 | isopentenyl diphosphate biosynthetic process, mevalonate pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate, via the intermediate mevalonate. This pathway converts acetate, in the form of acetyl-CoA, to isopentenyl diphosphate (IPP), the fundamental unit in isoprenoid biosynthesis, through a series of mevalonate intermediates. [GOC:go_curators, MetaCyc:PWY-922]
107 | GO:0006986 | 0.0203806521244176 | response to unfolded protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:jl]
107 | GO:0034620 | 0.0203806521244176 | cellular response to unfolded protein | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an unfolded protein stimulus. [GOC:mah]
107 | GO:0035967 | 0.0203806521244176 | cellular response to topologically incorrect protein | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure. [GOC:bf]
107 | GO:0042631 | 0.0207581721986002 | cellular response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of water. [GOC:go_curators]
107 | GO:0071462 | 0.0207581721986002 | cellular response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:mah]
107 | GO:0009967 | 0.0225048621639097 | positive regulation of signal transduction | biological_process | Any process that activates or increases the frequency, rate or extent of signal transduction. [GOC:sm]
107 | GO:0010647 | 0.0225048621639097 | positive regulation of cell communication | biological_process | Any process that increases the frequency, rate or extent of cell communication. Cell communication is the process that mediates interactions between a cell and its surroundings. Encompasses interactions such as signaling or attachment between one cell and another cell, between a cell and an extracellular matrix, or between a cell and any other aspect of its environment. [GOC:dph, GOC:tb]
107 | GO:0023056 | 0.0225048621639097 | positive regulation of signaling | biological_process | Any process that activates, maintains or increases the frequency, rate or extent of a signaling process. [GOC:mtg_signal]
107 | GO:0032270 | 0.0225048621639097 | positive regulation of cellular protein metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein, occurring at the level of an individual cell. [GOC:mah]
107 | GO:0006984 | 0.0231710411674657 | ER-nucleus signaling pathway | biological_process | Any series of molecular signals that conveys information from the endoplasmic reticulum to the nucleus, usually resulting in a change in transcriptional regulation. [GOC:mah]
107 | GO:0008219 | 0.0244500839466059 | cell death | biological_process | Any biological process that results in permanent cessation of all vital functions of a cell. A cell should be considered dead when any one of the following molecular or morphological criteria is met: (1) the cell has lost the integrity of its plasma membrane; (2) the cell, including its nucleus, has undergone complete fragmentation into discrete bodies (frequently referred to as \apoptotic bodies\"); and/or (3) its corpse (or its fragments) have been engulfed by an adjacent cell in vivo." [GOC:mah, GOC:mtg_apoptosis]
107 | GO:0016265 | 0.0244500839466059 | death | biological_process | A permanent cessation of all vital functions: the end of life; can be applied to a whole organism or to a part of an organism. [GOC:mah, ISBN:[PHONE]]
107 | GO:0051247 | 0.026173017559544 | positive regulation of protein metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving a protein. [GOC:ai]
107 | GO:0010363 | 0.0283038174427929 | regulation of plant-type hypersensitive response | biological_process | Any endogenous process that modulates the frequency, rate or extent of the plant hypersensitive response. [PMID:16255244]
107 | GO:0000186 | 0.0289813825560044 | activation of MAPKK activity | biological_process | The initiation of the activity of the inactive enzyme MAP kinase kinase (MAPKK). [PMID:9561267]
107 | [NAME] | 0.0298513795075687 | protein targeting to membrane | biological_process | The process of directing proteins towards a membrane, usually using signals contained within the protein. [GOC:curators]
107 | GO:0080135 | 0.0298513795075687 | regulation of cellular response to stress | biological_process | Any process that modulates the frequency, rate or extent of a cellular response to stress. Cellular response to stress is a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:dhl]
107 | GO:0006417 | 0.0341734850608445 | regulation of translation | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA. [GOC:isa_complete]
107 | GO:0043067 | 0.0383367933276923 | regulation of programmed cell death | biological_process | Any process that modulates the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
107 | GO:0009626 | 0.0411272096130849 | plant-type hypersensitive response | biological_process | The rapid, localized death of plant cells in response to invasion by a pathogen. [[NAME]]
107 | GO:0010941 | 0.0411272096130849 | regulation of cell death | biological_process | Any process that modulates the rate or frequency of cell death. Cell death is the specific activation or halting of processes within a cell so that its vital functions markedly cease, rather than simply deteriorating gradually over time, which culminates in cell death. [GOC:dph, GOC:tb]
107 | GO:0034050 | 0.0411272096130849 | host programmed cell death induced by symbiont | biological_process | Cell death in a host resulting from activation of host endogenous cellular processes after direct or indirect interaction with a symbiont (defined as the smaller of two, or more, organisms engaged in symbiosis, a close interaction encompassing mutualism through parasitism). An example of direct interaction is contact with penetrating hyphae of a fungus; an example of indirect interaction is encountering symbiont-secreted molecules. [GOC:pamgo_curators]
107 | GO:0045088 | 0.0420825573079342 | regulation of innate immune response | biological_process | Any process that modulates the frequency, rate or extent of the innate immune response, the organism's first line of defense against infection. [GOC:ebc]
107 | GO:0019374 | 0.0429955655361976 | galactolipid metabolic process | biological_process | The chemical reactions and pathways involving galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
107 | GO:0019375 | 0.0429955655361976 | galactolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of galactolipids, any glycolipid containing one of more residues of galactose and/or N-acetylgalactosamine. [ISBN:[PHONE]]
107 | GO:0050776 | 0.0430505158932514 | regulation of immune response | biological_process | Any process that modulates the frequency, rate or extent of the immune response, the immunological reaction of an organism to an immunogenic stimulus. [GOC:ai]
107 | GO:0002682 | 0.0440310864640788 | regulation of immune system process | biological_process | Any process that modulates the frequency, rate, or extent of an immune system process. [GOC:add]
107 | GO:0033037 | 0.0453208318782028 | polysaccharide localization | biological_process | Any process in which a polysaccharide is transported to, or maintained in, a specific location. [GOC:mah]
107 | GO:0052545 | 0.0453208318782028 | callose localization | biological_process | Any process in which callose is transported to, and/or maintained in, a specific location. [NAME] is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [GOC:mtg_pamgo_17jul06, http://www.onelook.com]
107 | GO:0009247 | 0.0476917796538624 | glycolipid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of glycolipid, a class of 1,2-di-O-acylglycerols joined at oxygen 3 by a glycosidic linkage to a carbohydrate part (usually a mono-, di- or tri-saccharide). [CHEBI:33563, GOC:go_curators]
107 | GO:0010449 | 0.0478416677626629 | root meristem growth | biological_process | The increase in size or mass of a root meristem, a population of undifferentiated cells in a plant root which maintains a continuous balance between the production of stem cells and the incorporation of their derivatives into the growth of the root. [GOC:tb]
107 | GO:0035966 | 0.0491230311248052 | response to topologically incorrect protein | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a protein that is not folded in its correct three-dimensional structure. [GOC:bf]
108 | [NAME] | 0.00323817866542025 | lipid storage | biological_process | The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development. [GOC:dph, GOC:mah, GOC:tb, PMID:11102830]
108 | GO:0050826 | 0.00395210553440784 | response to freezing | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a freezing stimulus, temperatures below 0 degrees Celsius. [GOC:jl]
108 | GO:0090351 | 0.00851779008442145 | seedling development | biological_process | The process whose specific outcome is the progression of the seedling over time, beginning with seed germination and ending when the first adult leaves emerge. [GOC:tb, PO:0007131]
108 | GO:0009756 | 0.0105302175079351 | carbohydrate mediated signaling | biological_process | A series of molecular signals mediated by the detection of carbohydrate. [GOC:sm]
108 | GO:0010182 | 0.0105302175079351 | sugar mediated signaling pathway | biological_process | The process in which a change in the level of a mono- or disaccharide such as glucose, fructose or sucrose triggers the expression of genes controlling metabolic and developmental processes. [PMID:9014361]
108 | GO:0006352 | 0.0121468168242007 | DNA-dependent transcription, initiation | biological_process | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. [GOC:jid, GOC:txnOH, PMID:18280161]
108 | GO:0071322 | 0.0146062287217401 | cellular response to carbohydrate stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a carbohydrate stimulus. [GOC:mah]
108 | GO:0048193 | 0.015208822902406 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
108 | [NAME] | 0.0172689478734799 | transcription elongation from RNA polymerase II promoter | biological_process | The extension of an RNA molecule after transcription initiation and promoter clearance at an RNA polymerase II promoter by the addition of ribonucleotides catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH]
108 | GO:0006741 | 0.0172689478734799 | NADP biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions; biosynthesis may be of either the oxidized form, NADP, or the reduced form, NADPH. [GOC:mah]
108 | GO:0006983 | 0.0172689478734799 | ER overload response | biological_process | The series of molecular signals generated by the accumulation of normal or misfolded proteins in the endoplasmic reticulum and leading to activation of transcription by NF-kappaB. [PMID:10390516]
108 | GO:0007141 | 0.0172689478734799 | male meiosis I | biological_process | A cell cycle process comprising the steps by which a cell progresses through male meiosis I, the first meiotic division in the male germline. [GOC:dph, GOC:mah]
108 | GO:0010255 | 0.0172689478734799 | glucose mediated signaling pathway | biological_process | The process in which a change in the level of mono- and disaccharide glucose trigger the expression of genes controlling metabolic and developmental processes. [GOC:sm]
108 | GO:0017126 | 0.0172689478734799 | nucleologenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a nucleolus, a small, dense body one or more of which are present in the nucleus of eukaryotic cells. [GOC:jl, ISBN:[PHONE]]
108 | GO:0034243 | 0.0172689478734799 | regulation of transcription elongation from RNA polymerase II promoter | biological_process | Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides, catalyzed by RNA polymerase II. [GOC:mah, GOC:txnOH]
108 | GO:0051196 | 0.0172689478734799 | regulation of coenzyme metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving a coenzyme. [GOC:ai]
108 | GO:0051791 | 0.0172689478734799 | medium-chain fatty acid metabolic process | biological_process | The chemical reactions and pathways involving medium-chain fatty acids, any fatty acid with a chain length of between C6 and C12. [CHEBI:59554, GOC:go_curators]
108 | GO:0080020 | 0.0172689478734799 | regulation of coenzyme A biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving coenzyme A. [PMID:18621975]
108 | GO:0000394 | 0.0206657459605795 | RNA splicing, via endonucleolytic cleavage and ligation | biological_process | Splicing of RNA via recognition of the folded RNA structure that brings the 5' and 3' splice sites into proximity and cleavage of the RNA at both the 3' and 5' splice sites by an endonucleolytic mechanism, followed by ligation of the exons. [GOC:krc, ISBN:[PHONE]]
108 | GO:0009845 | 0.0247388922566764 | seed germination | biological_process | The physiological and developmental changes that occur in a seed commencing with water uptake (imbibition) and terminating with the elongation of the embryonic axis. [PMID:8281041]
108 | GO:0000023 | 0.0323012356215629 | [NAME] process | biological_process | The chemical reactions and pathways involving the disaccharide maltose (4-O-alpha-D-glucopyranosyl-D-glucopyranose), an intermediate in the catabolism of glycogen and starch. [GOC:jl, ISBN:[PHONE]]
108 | GO:0009757 | 0.0342423932004054 | hexose mediated signaling | biological_process | A series of molecular signals mediated by the detection of hexose. [GOC:sm]
108 | GO:0010163 | 0.0342423932004054 | high-affinity potassium ion import | biological_process | The directed, energized, high affinity movement of potassium ions into a cell or organelle, driven by cation symport with hydrogen or sodium ions. [PMID:8893537]
108 | GO:0015675 | 0.0342423932004054 | nickel cation transport | biological_process | The directed movement of nickel (Ni) cations into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
108 | GO:0019359 | 0.0342423932004054 | nicotinamide nucleotide biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of nicotinamide nucleotides, any nucleotide that contains combined nicotinamide. [GOC:go_curators]
108 | GO:0032784 | 0.0342423932004054 | regulation of DNA-dependent transcription, elongation | biological_process | Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent [NAME] polymerase. [GOC:mah, GOC:txnOH]
108 | GO:0035444 | 0.0342423932004054 | nickel cation transmembrane transport | biological_process | The directed movement of nickel (Ni) cations across a membrane by means of some agent such as a transporter or pore. [GOC:vw]
108 | GO:0040019 | 0.0342423932004054 | positive regulation of embryonic development | biological_process | Any process that activates or increases the frequency, rate or extent of embryonic development. [GOC:go_curators]
108 | GO:0051026 | 0.0342423932004054 | chiasma assembly | biological_process | The cell cycle process in which a connection between chromatids assembles, indicating where an exchange of homologous segments has taken place by the crossing-over of non-sister chromatids. [http://www.onelook.com]
108 | GO:0071216 | 0.0342423932004054 | cellular response to biotic stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:mah]
108 | GO:0080120 | 0.0342423932004054 | CAAX-box protein maturation | biological_process | A series of specific posttranslational modifications to the CAAX box region of CAAX box proteins. CAAX box proteins are eukaryotic proteins that contain a CAAX motif where the C is a cysteine, the two A residues are aliphatic amino acids and the X can be one of several amino acids. The CAAX-box proteins undergo three sequential, enzymatic, post-translational modifications essential to their targeting: First, the proteins are prenylated by one of two prenyltransferases called farnesyltransferase and geranylgeranyltransferase-I. Prenylation results in the covalent attachment of either farnesyl or geranylgeranyl isoprenoid groups to the cysteine in the CAAX box motif. Prenylation is followed by proteolytic removal of the last three amino acids of the protein (AAX). Finally, the newly exposed carboxylate group of the isoprenylcysteine is methylated by an ER-associated prenyl-dependent carboxylmethyltransferase. [PMID:12039957, PMID:17114793, PMID:18641086]
108 | GO:0070647 | 0.0346592117309693 | protein modification by small protein conjugation or removal | biological_process | A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to or removed from a target protein. [GOC:mah]
108 | GO:0009793 | 0.0358278874234222 | embryo development ending in seed dormancy | biological_process | The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana. [GOC:go_curators, GOC:mtg_sensu]
108 | GO:0048580 | 0.039219633769671 | regulation of post-embryonic development | biological_process | Any process that modulates the frequency, rate or extent of post-embryonic development. Post-embryonic development is defined as the process whose specific outcome is the progression of the organism over time, from the completion of embryonic development to the mature structure. [GOC:jid]
108 | GO:0016143 | 0.0418214078356462 | S-glycoside metabolic process | biological_process | The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
108 | GO:0019757 | 0.0418214078356462 | glycosinolate metabolic process | biological_process | The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
108 | GO:0019760 | 0.0418214078356462 | glucosinolate metabolic process | biological_process | The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. [CHEBI:24279, GOC:curators]
108 | GO:0006888 | 0.0469360738967477 | ER to Golgi vesicle-mediated transport | biological_process | The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi. [GOC:ascb_2009, GOC:dph, GOC:jp, GOC:tb, ISBN:[PHONE]]
109 | GO:0000956 | 0.000102464415450913 | nuclear-transcribed mRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of nuclear-transcribed mRNAs in eukaryotic cells. [GOC:krc]
109 | GO:0048193 | 0.000134395210368895 | Golgi vesicle transport | biological_process | The directed movement of substances into, out of or within the Golgi apparatus, mediated by vesicles. [GOC:jid, ISBN:[PHONE], PMID:10219233]
109 | GO:0010618 | 0.000253156387075737 | aerenchyma formation | biological_process | The process that gives rise to aerenchyma, parenchyma tissue containing particularly large intercellular spaces of schizogenous or lysigenous origin. This process pertains to the initial formation of a structure from unspecified parts. [PMID:18055613, PO:0005702]
109 | GO:0006914 | 0.00107523764617608 | autophagy | biological_process | The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. [ISBN:[PHONE], PMID:11099404, PMID:9412464]
109 | GO:0009723 | 0.00129514119903061 | response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:jl]
109 | GO:0043069 | 0.00238962622493606 | negative regulation of programmed cell death | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of programmed cell death, cell death resulting from activation of endogenous cellular processes. [GOC:jl]
109 | GO:0009738 | 0.00320332320542516 | abscisic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of abscisic acid. [GOC:sm]
109 | GO:0009627 | 0.00321184226434474 | systemic acquired resistance | biological_process | The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. [GOC:lr, ISBN:052143641]
109 | GO:0006623 | 0.00554933398878416 | protein targeting to vacuole | biological_process | The process of directing proteins towards the vacuole, usually using signals contained within the protein. [GOC:curators]
109 | GO:0006521 | 0.00665665923823948 | regulation of cellular amino acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids. [GOC:go_curators]
109 | GO:0000165 | 0.00794147830873485 | MAPK cascade | biological_process | An intracellular protein kinase cascade containing at least a MAPK, a MAPKK and a MAP3K. The cascade can also contain two additional tiers: the upstream MAP4K and the downstream MAP [NAME]-activated kinase (MAPKAPK). The kinases in each tier phosphorylate and activate the kinases in the downstream tier to transmit a signal within a cell. [GOC:bf, GOC:mtg_signaling_feb11, PMID:20811974, PMID:9561267]
109 | GO:0006891 | 0.0107227529113545 | intra-Golgi vesicle-mediated transport | biological_process | The directed movement of substances within the Golgi, mediated by small transport vesicles. These either fuse with the cis-Golgi or with each other to form the membrane stacks known as the cis-Golgi reticulum (network). [ISBN:[PHONE]]
109 | GO:0071407 | 0.0107358124732518 | cellular response to organic cyclic compound | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic cyclic compound stimulus. [GOC:mah]
109 | GO:0071248 | 0.0150508145585825 | cellular response to metal ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a metal ion stimulus. [GOC:mah]
109 | GO:0000291 | 0.0159897665493864 | nuclear-transcribed mRNA catabolic process, exonucleolytic | biological_process | The chemical reactions and pathways resulting in the breakdown of the transcript body of a nuclear-transcribed mRNA that occurs when the ends are not protected by the 5'-cap or the 3'-poly(A) tail. [GOC:krc]
109 | GO:0002240 | 0.0159897665493864 | response to molecule of oomycetes origin | biological_process | Any process that results in a change in state or activity of an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus by molecules of oomycetes origin. [GOC:rl, GOC:sm]
109 | GO:0010602 | 0.0159897665493864 | regulation of 1-aminocyclopropane-1-carboxylate metabolic process | biological_process | Regulation of the chemical reactions and pathways involving 1-aminocyclopropane-1-carboxylate, the anion of 1-aminocyclopropane-1-carboxylic acid, a natural product found in plant tissues. It is a key intermediate in the biosynthesis of ethylene ([NAME]), a fruit-ripening hormone in plants. [PMID:18055613]
109 | GO:0016560 | 0.0159897665493864 | protein import into peroxisome matrix, docking | biological_process | The process in which a complex formed of a peroxisome targeting sequence (PTS) receptor bound to a PTS-bearing protein docks with translocation machinery in the preoxisomal membrane. [PMID:11687502, PMID:11988772, PMID:14754507]
109 | GO:0016578 | 0.0159897665493864 | histone deubiquitination | biological_process | The modification of histones by removal of ubiquitin groups. [GOC:ai]
109 | GO:0043270 | 0.0159897665493864 | positive regulation of ion transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
109 | GO:0051924 | 0.0159897665493864 | regulation of calcium ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
109 | GO:0051928 | 0.0159897665493864 | positive regulation of calcium ion transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of calcium ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
109 | GO:0071294 | 0.0159897665493864 | cellular response to zinc ion | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a zinc ion stimulus. [GOC:mah]
109 | GO:1902005 | 0.0159897665493864 | regulation of proline biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of proline biosynthetic process. [GOC:TermGenie, PMID:23415322]
109 | GO:1902006 | 0.0159897665493864 | negative regulation of proline biosynthetic process | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of proline biosynthetic process. [GOC:TermGenie, PMID:23415322]
109 | GO:2000214 | 0.0159897665493864 | regulation of proline metabolic process | biological_process | Any process that modulates the frequency, rate or extent of proline metabolic process. [GOC:sl]
109 | GO:2000215 | 0.0159897665493864 | negative regulation of proline metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of proline metabolic process. [GOC:sl]
109 | GO:2000283 | 0.0159897665493864 | negative regulation of cellular amino acid biosynthetic process | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of cellular amino acid biosynthetic process. [GOC:obol]
109 | GO:0000302 | 0.0186697141447862 | response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:krc]
109 | GO:0033554 | 0.0197651105047318 | cellular response to stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating the organism is under stress. The stress is usually, but not necessarily, exogenous (e.g. temperature, humidity, ionizing radiation). [GOC:mah]
109 | [NAME] | 0.0197985835084782 | gravitropism | biological_process | The orientation of plant parts under the stimulation of gravity. [ISBN:[PHONE]]
109 | GO:0071241 | 0.0203259183481547 | cellular response to inorganic substance | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus. [GOC:mah]
109 | GO:0006487 | 0.0208029005002849 | protein N-linked glycosylation | biological_process | A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan. [GOC:pr, RESID:AA0151, RESID:AA0156, RESID:AA0327]
109 | GO:0034976 | 0.0213012722405595 | response to endoplasmic reticulum stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating endoplasmic reticulum (ER) stress. ER stress usually results from the accumulation of unfolded or misfolded proteins in the ER lumen. [GOC:mah]
109 | GO:0071369 | 0.0223293975734918 | cellular response to ethylene stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ethylene (ethene) stimulus. [GOC:mah]
109 | GO:0055046 | 0.0232114863822347 | microgametogenesis | biological_process | The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure. [GOC:mtg_plant]
109 | GO:0006944 | 0.0232432269882861 | cellular membrane fusion | biological_process | The cellular process that joins two lipid bilayers to form a single membrane. [GOC:mah]
109 | GO:0061025 | 0.0232432269882861 | membrane fusion | biological_process | The membrane organization process that joins two lipid bilayers to form a single membrane. [GOC:dph, GOC:tb]
109 | GO:0007131 | 0.0239155558409944 | reciprocal meiotic recombination | biological_process | The cell cycle process in which double strand breaks are formed and repaired through a double Holliday junction intermediate. This results in the equal exchange of genetic material between non-sister chromatids in a pair of homologous chromosomes. These reciprocal recombinant products ensure the proper segregation of homologous chromosomes during meiosis I and create genetic diversity. [PMID:2087779]
109 | GO:0035825 | 0.0239155558409944 | reciprocal DNA recombination | biological_process | A DNA recombination process that results in the equal exchange of genetic material between the recombining DNA molecules. [GOC:mah, PMID:11139492, PMID:17304215]
109 | GO:0009629 | 0.0240935529098067 | response to gravity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gravitational stimulus. [GOC:hb]
109 | GO:0007127 | 0.0255613584327492 | meiosis I | biological_process | A cell cycle process comprising the steps by which a cell progresses through the first phase of meiosis, in which cells divide and homologous chromosomes are paired and segregated from each other, producing two daughter cells. [GOC:dph, GOC:mah, PMID:9334324]
109 | GO:0009561 | 0.0264370192468891 | megagametogenesis | biological_process | The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center. [GOC:jl, GOC:mtg_plant]
109 | GO:0009606 | 0.0264370192468891 | tropism | biological_process | The movement of an organism, or part of an organism, in response to an external source of stimulus, usually toward or away from it. [GOC:curators, ISBN:[PHONE]]
109 | GO:0000184 | 0.0317263767116029 | nuclear-transcribed mRNA catabolic process, nonsense-mediated decay | biological_process | The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins. [GOC:krc, GOC:ma, PMID:10025395]
109 | GO:0000820 | 0.0317263767116029 | regulation of glutamine family amino acid metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving amino acids of the glutamine family, comprising arginine, glutamate, glutamine and proline. [GOC:go_curators]
109 | GO:0006515 | 0.0317263767116029 | misfolded or incompletely synthesized protein catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of misfolded or attenuated proteins. [GOC:jl]
109 | GO:0006611 | 0.0317263767116029 | protein export from nucleus | biological_process | The directed movement of a protein from the nucleus into the cytoplasm. [GOC:jl]
109 | GO:0006890 | 0.0317263767116029 | retrograde vesicle-mediated transport, Golgi to ER | biological_process | The directed movement of substances from the Golgi back to the endoplasmic reticulum, mediated by vesicles bearing specific protein coats such as COPI or COG. [ISBN:[PHONE], PMID:16510524]
109 | GO:0009961 | 0.0317263767116029 | response to 1-aminocyclopropane-1-carboxylic acid | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a 1-aminocyclopropane-1-carboxylic acid stimulus. [GOC:jl]
109 | GO:0010450 | 0.0317263767116029 | inflorescence meristem growth | biological_process | The increase in size or mass of an inflorescence meristem, a population of undifferentiated cells in a plant shoot which produces small leaves and then floral meristems, which will give rise to flowers. [GOC:tb]
109 | GO:0010587 | 0.0317263767116029 | miRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. [PMID:17993620]
109 | [NAME] | 0.0317263767116029 | malate transport | biological_process | The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
109 | GO:0033239 | 0.0317263767116029 | negative regulation of cellular amine metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amines. [GOC:mah]
109 | GO:0042780 | 0.0317263767116029 | tRNA 3'-end processing | biological_process | The process in which the 3' end of a pre-tRNA molecule is converted to that of a mature tRNA. [GOC:go_curators]
109 | GO:0045763 | 0.0317263767116029 | negative regulation of cellular amino acid metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving amino acid. [GOC:go_curators]
109 | GO:0048832 | 0.0317263767116029 | specification of organ number | biological_process | The regionalization process that modulates the quantity of a particular type of organ. [GOC:dph, GOC:isa_complete, GOC:tb]
109 | GO:0048833 | 0.0317263767116029 | specification of floral organ number | biological_process | Any process that modulates the number of floral organs formed in a floral whorl. [GOC:tb]
109 | GO:2000282 | 0.0317263767116029 | regulation of cellular amino acid biosynthetic process | biological_process | Any process that modulates the frequency, rate or extent of cellular amino acid biosynthetic process. [GOC:obol]
109 | GO:0071901 | 0.0327909439623126 | negative regulation of protein serine/threonine kinase activity | biological_process | Any process that decreases the rate, frequency, or extent of protein serine/threonine kinase activity. [GOC:BHF, GOC:mah]
109 | GO:0072503 | 0.0327909439623126 | cellular divalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of divalent cations at the level of a cell. [GOC:mah]
109 | GO:0006469 | 0.0362732390250242 | negative regulation of protein kinase activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of protein kinase activity. [GOC:go_curators]
109 | GO:0033673 | 0.0362732390250242 | negative regulation of kinase activity | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of kinase activity, the catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule. [GOC:mah]
109 | GO:0016558 | 0.0366818102359564 | protein import into peroxisome matrix | biological_process | The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:[PHONE], PMID:11687502, PMID:11988772]
109 | GO:0006310 | 0.0371475419937158 | DNA recombination | biological_process | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Intrachromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. [ISBN:[PHONE]]
109 | GO:0006625 | 0.0387407669414169 | protein targeting to peroxisome | biological_process | The process of directing proteins towards the peroxisome, usually using signals contained within the protein. [GOC:ai]
109 | GO:0072662 | 0.0387407669414169 | protein localization to peroxisome | biological_process | A process in which a protein is transported to, or maintained at, a location in a peroxisome. [GOC:ecd]
109 | GO:0072663 | 0.0387407669414169 | establishment of protein localization to peroxisome | biological_process | The directed movement of a protein to a specific location in a peroxisome. [GOC:mah]
109 | GO:0001933 | 0.0398912204130211 | negative regulation of protein phosphorylation | biological_process | Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein. [GOC:hjd]
109 | GO:0042138 | 0.0398912204130211 | meiotic DNA double-strand break formation | biological_process | The cell cycle process in which double-strand breaks are generated at defined hotspots throughout the genome during meiosis I. This results in the initiation of meiotic recombination. [GOC:elh, GOC:jl, PMID:11529427]
109 | GO:0051348 | 0.0398912204130211 | negative regulation of transferase activity | biological_process | Any process that stops or reduces the rate of transferase activity, the catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from a donor compound to an acceptor. [GOC:ai]
109 | GO:0009863 | 0.0400689197508203 | salicylic acid mediated signaling pathway | biological_process | A series of molecular signals mediated by salicylic acid. [GOC:jy]
109 | GO:0071446 | 0.0400689197508203 | cellular response to salicylic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a salicylic acid stimulus. [GOC:mah]
109 | GO:0043269 | 0.0401633737387034 | regulation of ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
109 | GO:0043574 | 0.0408576263908906 | peroxisomal transport | biological_process | Transport of substances into, out of or within a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:jl]
109 | GO:0009862 | 0.0417223142751898 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
109 | GO:0009581 | 0.0436397528745511 | detection of external stimulus | biological_process | The series of events in which an external stimulus is received by a cell and converted into a molecular signal. [GOC:hb]
109 | GO:0023014 | 0.0436397528745511 | signal transduction by phosphorylation | biological_process | A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate. [GOC:mtg_signal, GOC:signaling]
109 | GO:0042326 | 0.0436397528745511 | negative regulation of phosphorylation | biological_process | Any process that stops, prevents or decreases the rate of addition of phosphate groups to a molecule. [GOC:jl]
109 | GO:0031324 | 0.0442141748310966 | negative regulation of cellular metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways by which individual cells transform chemical substances. [GOC:mah]
109 | GO:0006828 | 0.0472137987093984 | manganese ion transport | biological_process | The directed movement of manganese (Mn) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
109 | GO:0007029 | 0.0472137987093984 | endoplasmic reticulum organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the endoplasmic reticulum. [GOC:dph, GOC:jl, GOC:mah]
109 | GO:0010343 | 0.0472137987093984 | singlet oxygen-mediated programmed cell death | biological_process | Programmed cell death induced by singlet oxygen. Programmed cell death is the cell death resulting from activation of endogenous cellular processes. [GOC:mtg_apoptosis, PMID:17075038]
109 | GO:0010586 | 0.0472137987093984 | miRNA metabolic process | biological_process | The chemical reactions and pathways involving miRNA, microRNA, a class of single-stranded RNA molecules of about 21-23 nucleotides in length, which regulates gene expression. [PMID:17993620]
109 | [NAME] | 0.0472137987093984 | circadian regulation of calcium ion oscillation | biological_process | Any process that modulates the concentration of cytosolic free calcium ion [Ca2+]cyt with a regularity of approximately 24 hours. [PMID:17982000]
109 | GO:0034661 | 0.0472137987093984 | ncRNA catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of non-coding RNA transcripts (ncRNAs). Includes the breakdown of cryptic unstable transcripts (CUTs). [GOC:rb, PMID:18591258]
109 | GO:0051050 | 0.0472137987093984 | positive regulation of transport | biological_process | Any process that activates or increases the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
109 | GO:0051480 | 0.0472137987093984 | cytosolic calcium ion homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of calcium ions within the cytosol of a cell or between the cytosol and its surroundings. [GOC:ai, GOC:mah, GOC:rph]
109 | GO:0071452 | 0.0472137987093984 | cellular response to singlet oxygen | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a singlet oxygen stimulus. Singlet oxygen is a dioxygen (O2) molecule in which two 2p electrons have similar spin. Singlet oxygen is more highly reactive than the form in which these electrons are of opposite spin, and it is produced in mutant chloroplasts lacking carotenoids and by leukocytes during metabolic burst. [GOC:mah]
109 | GO:0071731 | 0.0472137987093984 | response to nitric oxide | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf]
109 | GO:0071732 | 0.0472137987093984 | cellular response to nitric oxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitric oxide stimulus. [GOC:mah, GOC:yaf]
109 | GO:0097468 | 0.0472137987093984 | programmed cell death in response to reactive oxygen species | biological_process | Cell death resulting from activation of endogenous cellular processes and occurring as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mtg_apoptosis]
109 | GO:0010563 | 0.0475138277957733 | negative regulation of phosphorus metabolic process | biological_process | Any process that decreases the frequency, rate or extent of the chemical reactions and pathways involving phosphorus or compounds containing phosphorus. [GOC:dph, GOC:tb]
109 | GO:0031400 | 0.0475138277957733 | negative regulation of protein modification process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the covalent alteration of one or more amino acid residues within a protein. [GOC:mah, GOC:tb]
109 | GO:0045936 | 0.0475138277957733 | negative regulation of phosphate metabolic process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the chemical reactions and pathways involving phosphates. [GOC:go_curators]
109 | GO:0072507 | 0.0475138277957733 | divalent inorganic cation homeostasis | biological_process | Any process involved in the maintenance of an internal steady state of divalent cations within an organism or cell. [GOC:mah]
109 | GO:0009560 | 0.0498958007084216 | embryo sac egg cell differentiation | biological_process | The process in which an uncellularized embryo sac nucleus cellularizes and acquires the specialized features of an egg cell. An example of this process is found in Arabidopsis thaliana. [GOC:jid, GOC:mtg_plant, GOC:mtg_sensu]
109 | GO:0034614 | 0.0498958007084216 | cellular response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mah]
110 | GO:0046786 | 0.000736581426711366 | viral replication complex formation and maintenance | biological_process | The process of organizing and assembling viral replication proteins in preparation for viral replication. [ISBN:[PHONE]]
110 | GO:0010260 | 0.00169978649963258 | organ senescence | biological_process | The process that occurs in an organ near the end of its active life that is associated with the dismantling of cell components and membranes, and an overall decline in metabolism. An example of this process is found in Arabidopsis thaliana. [GOC:mtg_sensu, GOC:sm]
110 | GO:0006535 | 0.0158298688839786 | cysteine biosynthetic process from serine | biological_process | The chemical reactions and pathways resulting in the formation of cysteine from other compounds, including serine. [GOC:go_curators]
110 | GO:0009661 | 0.0158298688839786 | chromoplast organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the chromoplast. A chromoplast is a plastid containing pigments other than chlorophyll, usually yellow and orange carotenoid pigments. [GOC:jid]
110 | GO:0010111 | 0.0158298688839786 | glyoxysome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the glyoxysome. A glyoxysome is a microbody that contains the enzymes of the glyoxylate pathway. [GOC:tb]
110 | GO:0016050 | 0.0158298688839786 | vesicle organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a vesicle. [GOC:mah]
110 | GO:0033542 | 0.0158298688839786 | fatty acid beta-oxidation, unsaturated, even number | biological_process | A fatty acid beta-oxidation pathway by which fatty acids having cis-double bonds on even-numbered carbons are degraded. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively). [GOC:mah, MetaCyc:PWY-5138]
110 | GO:0042273 | 0.0158298688839786 | ribosomal large subunit biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a large ribosomal subunit; includes transport to the sites of protein synthesis. [GOC:jl]
110 | GO:0080186 | 0.0158298688839786 | developmental vegetative growth | biological_process | The increase in size or mass of non-reproductive plant parts. [PO:0007134]
110 | GO:1901999 | 0.0158298688839786 | homogentisate metabolic process | biological_process | The chemical reactions and pathways involving homogentisate. [GOC:TermGenie, PMID:22980205]
110 | GO:1902000 | 0.0158298688839786 | homogentisate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of homogentisate. [GOC:TermGenie, PMID:22980205]
110 | GO:0071215 | 0.0215284968811602 | cellular response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:mah]
110 | GO:0006559 | 0.0314116445085915 | L-phenylalanine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. [GOC:go_curators]
110 | GO:0006572 | 0.0314116445085915 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. [GOC:go_curators]
110 | GO:0009830 | 0.0314116445085915 | cell wall modification involved in abscission | biological_process | A cellular process that results in the breakdown of the cell wall that contributes to the process of abscission. [GOC:dph, GOC:lr, GOC:sdb_2009, GOC:tb]
110 | GO:0010044 | 0.0314116445085915 | response to aluminum ion | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an aluminum ion stimulus. [GOC:sm]
110 | GO:0044277 | 0.0314116445085915 | cell wall disassembly | biological_process | A process that results in the breakdown of the cell wall. [GOC:jl]
110 | GO:0048584 | 0.0338071591301556 | positive regulation of response to stimulus | biological_process | Any process that activates, maintains or increases the rate of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
110 | GO:0009737 | 0.0372054793809639 | response to abscisic acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. [GOC:jl]
110 | GO:0097306 | 0.0374436918068873 | cellular response to alcohol | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an alcohol stimulus. [CHEBI:30879, GOC:pr]
110 | GO:0009864 | 0.0467491760495656 | induced systemic resistance, [NAME] mediated signaling pathway | biological_process | The series of molecular signals mediated by [NAME] involved in induced systemic resistance. [GOC:jy]
110 | GO:0009939 | 0.0467491760495656 | positive regulation of gibberellic acid mediated signaling pathway | biological_process | Any process that activates or increases the frequency, rate or extent of gibberellic acid mediated signaling activity. [GOC:sm]
110 | GO:0051156 | 0.0467491760495656 | glucose 6-phosphate metabolic process | biological_process | The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6. [GOC:ai]
110 | [NAME] | 0.0467491760495656 | [NAME] development | biological_process | The process whose specific outcome is the progression of a root hair cell over time, from its formation to the mature state. [PMID:19675148]
111 | GO:0009788 | 0.00240439857852204 | negative regulation of abscisic acid mediated signaling pathway | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid. [GOC:lr]
111 | GO:0010114 | 0.00519994774580412 | response to red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a red light stimulus. Red light is electromagnetic radiation of wavelength of 580-700nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:sm]
111 | GO:0046482 | 0.00544379471136549 | para-aminobenzoic acid metabolic process | biological_process | The chemical reactions and pathways involving para-aminobenzoic acid, an intermediate in the synthesis of folic acid, a compound which some organisms, e.g. prokaryotes, eukaryotic microbes, and plants, can synthesize de novo. Others, notably mammals, cannot. In yeast, it is present as a factor in the B complex of vitamins. [ISBN:[PHONE], PMID:11377864, [NAME]
111 | GO:0010218 | 0.00572801277835507 | response to far red light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of far red light stimulus. Far red light is electromagnetic radiation of wavelength 700-800nm. An example of this response is seen at the beginning of many plant species developmental stages. These include germination, and the point when cotyledon expansion is triggered. In certain species these processes take place in response to absorption of red light by the pigment molecule phytochrome, but the signal can be reversed by exposure to far red light. During the initial phase the phytochrome molecule is only present in the red light absorbing form, but on absorption of red light it changes to a far red light absorbing form, triggering progress through development. An immediate short period of exposure to far red light entirely returns the pigment to its initial state and prevents triggering of the developmental process. A thirty minute break between red and subsequent far red light exposure renders the red light effect irreversible, and development then occurs regardless of whether far red light exposure subsequently occurs. [GOC:mtg_far_red, GOC:tb]
111 | GO:0009807 | 0.00623600895428079 | lignan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of lignans, any member of a class of plant metabolites related to lignins. Lignans are usually found as phenylpropanoid dimers in which the phenylpropanoid units are linked tail to tail and thus having a 2,3 dibenzylbutane skeleton, but higher oligomers can also exist. [GOC:jl, PMID:10074466]
111 | GO:0015864 | 0.00623600895428079 | pyrimidine nucleoside transport | biological_process | The directed movement of a pyrimidine nucleoside, a pyrimidine base covalently bonded to a ribose or deoxyribose sugar, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
111 | GO:0018316 | 0.00623600895428079 | peptide cross-linking via L-cystine | biological_process | The oxidation of two peptidyl-cysteine residues to form a peptidyl-L-cystine (dicysteine) in which segments of peptide chain are linked by a disulfide bond; the cross-link may be between different or the same peptide chain. [RESID:AA0025]
111 | GO:0071454 | 0.00623600895428079 | cellular response to anoxia | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating a decline in oxygen levels to trace amounts, <0.1%. [GOC:mah]
111 | GO:0080153 | 0.00623600895428079 | negative regulation of reductive pentose-phosphate cycle | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of the reductive pentose-phosphate cycle. [PMID:17031544, PMID:20399532]
111 | GO:0042743 | 0.00835196903850164 | hydrogen peroxide metabolic process | biological_process | The chemical reactions and pathways involving hydrogen peroxide (H2O2), a potentially harmful byproduct of aerobic cellular respiration which can cause damage to DNA. [GOC:jl, http://biotech.icmb.utexas.edu/]
111 | GO:0009637 | 0.00849639842929904 | response to blue light | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a blue light stimulus. Blue light is electromagnetic radiation with a wavelength of between 440 and 500nm. [GOC:ai, GOC:mtg_far_red]
111 | GO:0009901 | 0.0124341211645097 | anther dehiscence | biological_process | The dehiscence of an anther to release the pollen grains contained within it. [GOC:tb]
111 | GO:0010107 | 0.0124341211645097 | potassium ion import | biological_process | The directed movement of potassium ions into a cell or organelle. [GOC:sm]
111 | GO:0015785 | 0.0124341211645097 | UDP-galactose transport | biological_process | The directed movement of UDP-galactose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-galactose is a substance composed of galactose in glycosidic linkage with uridine diphosphate. [GOC:ai]
111 | GO:0015786 | 0.0124341211645097 | UDP-glucose transport | biological_process | The directed movement of UDP-glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. UDP-glucose is a substance composed of glucose in glycosidic linkage with uridine diphosphate. [GOC:ai]
111 | GO:0070141 | 0.0124341211645097 | response to UV-A | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 400 to 500 nm. [GOC:BHF, GOC:mah]
111 | GO:0071492 | 0.0124341211645097 | cellular response to UV-A | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 400 to 500 nm. [GOC:mah]
111 | GO:0072334 | 0.0124341211645097 | UDP-galactose transmembrane transport | biological_process | The directed movement of UDP-galactose across a membrane into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:mah]
111 | GO:0080158 | 0.0124341211645097 | chloroplast ribulose bisphosphate carboxylase complex biogenesis | biological_process | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of a chloroplast ribulose bisphosphate carboxylase (RubisCO) complex. Includes the synthesis of the constituent protein molecules, and those protein modifications that are involved in synthesis or assembly of the complex. [PMID:20561259]
111 | GO:0043269 | 0.0136828900478224 | regulation of ion transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:jl]
111 | GO:0009414 | 0.0158859981818814 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
111 | GO:0009415 | 0.0162264588183003 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
111 | GO:0009643 | 0.0185945609077617 | photosynthetic acclimation | biological_process | A response to light intensity in which exposure to medium-intensity light results in increased tolerance to high-intensity light. [GOC:mah, PMID:11069694]
111 | GO:0009900 | 0.0185945609077617 | dehiscence | biological_process | The opening of an anther, fruit or other structure, which permits the escape of reproductive bodies contained within it. [ISBN:[PHONE]]
111 | GO:0071486 | 0.0185945609077617 | cellular response to high light intensity | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:mah]
111 | GO:0090322 | 0.0185945609077617 | regulation of superoxide metabolic process | biological_process | Any process that modulates the rate, frequency, or extent of superoxide metabolism, the chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. [GOC:tb]
111 | GO:0051049 | 0.0186693523111719 | regulation of transport | biological_process | Any process that modulates the frequency, rate or extent of the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
111 | GO:0015781 | 0.0247175511693969 | [NAME] transport | biological_process | The directed movement of pyrimidine nucleotide-sugars into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. [GOC:ai]
111 | GO:0090481 | 0.0247175511693969 | [NAME] transmembrane transport | biological_process | The directed movement of pyrimidine nucleotide-sugars across a membrane. Pyrimidine nucleotide-sugars are pyrimidine nucleotides in glycosidic linkage with a monosaccharide or monosaccharide derivative. [GOC:tb]
111 | GO:0010155 | 0.0254635682845827 | regulation of proton transport | biological_process | Any process that modulates the frequency, rate or extent of proton transport into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:sm]
111 | GO:0042744 | 0.0254635682845827 | hydrogen peroxide catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of hydrogen peroxide (H2O2). [GOC:jl]
111 | GO:0070301 | 0.0278898011563807 | cellular response to hydrogen peroxide | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hydrogen peroxide (H2O2) stimulus. [CHEBI:16240, GOC:mah]
111 | GO:0015977 | 0.0308033136501233 | carbon fixation | biological_process | A metabolic process in which carbon (usually derived from carbon dioxide) is incorporated into organic compounds (usually carbohydrates). [GOC:jl, GOC:mah]
111 | GO:0034644 | 0.0308033136501233 | cellular response to UV | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an ultraviolet radiation (UV light) stimulus. Ultraviolet radiation is electromagnetic radiation with a wavelength in the range of 10 to 380 nanometers. [GOC:mah]
111 | GO:0071484 | 0.0308033136501233 | cellular response to light intensity | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus. [GOC:mah]
111 | GO:0072531 | 0.0308033136501233 | pyrimidine-containing compound transmembrane transport | biological_process | The directed movement of a pyrimidine-containing compound across a membrane. A pyrimidine-containing compound is any compound that contains pyrimidine or a formal derivative thereof. [[NAME], GOC:mah]
111 | GO:0010200 | 0.0320346516114177 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
111 | GO:0032879 | 0.033512306363987 | regulation of localization | biological_process | Any process that modulates the frequency, rate or extent of any process in which a cell, a substance, or a cellular entity is transported to, or maintained in, a specific location. [GOC:mah]
111 | GO:0009641 | 0.0368520687736863 | [NAME] | biological_process | Shade avoidance is a set of responses that plants display when they are subjected to the shade of another plant. It often includes elongation, altered flowering time, increased apical dominance and altered partitioning of resources. Plants are able to distinguish between the shade of an inanimate object (e.g. a rock) and the shade of another plant due to the altered balance between red and far-red light in the shade of a plant; this balance between red and far-red light is perceived by phytochrome. [Wikipedia:Shade_avoidance]
111 | GO:0010243 | 0.0389616664946204 | response to organic nitrogen | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic nitrogen stimulus. An organic nitrogen compound is formally a compound containing at least one carbon-nitrogen bond. [CHEBI:35352, PMID:9869419]
111 | GO:0034614 | 0.0413157198050775 | cellular response to reactive oxygen species | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a reactive oxygen species stimulus. Reactive oxygen species include singlet oxygen, superoxide, and oxygen free radicals. [GOC:mah]
111 | GO:0090333 | 0.0428640356940839 | regulation of stomatal closure | biological_process | Any process that modulates the rate, frequency, or extent of stomatal closure. Stomatal closure is the process of closing of stomata, pores in the epidermis of leaves and stems bordered by two guard cells and serving in gas exchange. [GOC:tb]
111 | GO:1901698 | 0.0443078885193492 | response to nitrogen compound | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a nitrogen compound stimulus. [GOC:pr, GOC:TermGenie]
111 | GO:0034599 | 0.0457352130672689 | cellular response to oxidative stress | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals. [GOC:mah]
111 | GO:0009642 | 0.0474858295678999 | response to light intensity | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a light intensity stimulus. [GOC:go_curators]
111 | GO:0006801 | 0.0488394323017252 | superoxide metabolic process | biological_process | The chemical reactions and pathways involving superoxide, the superoxide anion O2- (superoxide free radical), or any compound containing this species. [CHEBI:18421, GOC:jl]
111 | GO:0070417 | 0.0488394323017252 | cellular response to cold | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism. [GOC:jp]
112 | GO:0019288 | 0.00307108525021169 | isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway | biological_process | The chemical reactions and pathways resulting in the formation of isopentenyl diphosphate by the mevalonate-independent pathway. Isopentenyl diphosphate (IPP) is the fundamental unit in isoprenoid biosynthesis and is biosynthesized from pyruvate and glyceraldehyde 3-phosphate via intermediates, including 1-deoxy-D-xylulose 5-phosphate. [GOC:go_curators, MetaCyc:NONMEVIPP-PWY]
112 | GO:0016117 | 0.00497685888547781 | carotenoid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of carotenoids, tetraterpenoid compounds in which two units of 4 isoprenoid residues joined head-to-tail are themselves joined tail-to-tail. [GOC:go_curators]
112 | GO:0015706 | 0.00733600277219001 | nitrate transport | biological_process | The directed movement of nitrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
112 | GO:0006127 | 0.0108730412535997 | glycerophosphate shuttle | biological_process | The process of transferring reducing equivalents from the cytosol into the mitochondria; NADH is used to synthesise glycerol 3-phosphate in the cytosol; this compound is then transported into the mitochondria where it is converted to dihydroxyacetone phosphate (DHAP) using FAD; DHAP then returns to the cytosol to complete the cycle. [GOC:jl, GOC:mtg_electron_transport, ISBN:071672009]
112 | GO:0042407 | 0.0108730412535997 | cristae formation | biological_process | The assembly of cristae, the inwards folds of the inner mitochondrial membrane. [GOC:jl, ISBN:[PHONE]]
112 | GO:0080058 | 0.0108730412535997 | protein deglutathionylation | biological_process | The protein modification process in which a glutathione molecule is removed from a protein amino acid by breaking a disulfide linkage. [GOC:tb]
112 | GO:0044275 | 0.012670495426006 | cellular carbohydrate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y, as carried out by individual cells. [GOC:jl]
112 | GO:0006423 | 0.0216295794264353 | cysteinyl-tRNA aminoacylation | biological_process | The process of coupling cysteine to cysteinyl-tRNA, catalyzed by cysteinyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA. [GOC:mcc, ISBN:[PHONE]]
112 | GO:0007006 | 0.0216295794264353 | mitochondrial membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a mitochondrial membrane, either of the lipid bilayer surrounding a mitochondrion. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
112 | GO:0007007 | 0.0216295794264353 | inner mitochondrial membrane organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of the mitochondrial inner membrane. [GOC:ai, GOC:dph, GOC:jl, GOC:mah]
112 | GO:0080165 | 0.0216295794264353 | callose deposition in phloem sieve plate | biological_process | Any process in which callose is transported to, and/or maintained in, phloem sieve plate. Callose is a linear 1,3-beta-d-glucan formed from UDP-glucose and is found in certain plant cell walls. [PMID:19470642]
112 | GO:0080175 | 0.0216295794264353 | phragmoplast microtubule organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in phragmoplast, a plant cell specific structure that forms during late cytokinesis. Phragmoplast serves as a scaffold for cell plate assembly and subsequent formation of a new cell wall separating the two daughter cells. [PMID:19383896]
112 | GO:0000413 | 0.0254418011516277 | protein peptidyl-prolyl isomerization | biological_process | The modification of a protein by cis-trans isomerization of a proline residue. [GOC:krc, PMID:16959570]
112 | GO:0019405 | 0.0322708443975702 | alditol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of alditols, any polyhydric alcohol derived from the acyclic form of a monosaccharide by reduction of its aldehyde or keto group to an alcoholic group. [ISBN:[PHONE]]
112 | GO:0019563 | 0.0322708443975702 | glycerol catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycerol, 1,2,3-propanetriol, a sweet, hygroscopic, viscous liquid, widely distributed in nature as a constituent of many lipids. [GOC:go_curators, ISBN:[PHONE]]
112 | GO:0071456 | 0.0322708443975702 | cellular response to hypoxia | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating lowered oxygen tension. Hypoxia, defined as a decline in O2 levels below normoxic levels of 20.8 - 20.95%, results in metabolic adaptation at both the cellular and organismal level. [GOC:mah]
112 | GO:0018208 | 0.0343307119470415 | peptidyl-proline modification | biological_process | The modification of peptidyl-proline. [GOC:go_curators]
112 | GO:0034219 | 0.0367164581858654 | carbohydrate transmembrane transport | biological_process | The process in which a carbohydrate is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
112 | GO:0006650 | 0.0373096537771409 | [NAME] process | biological_process | The chemical reactions and pathways involving glycerophospholipids, any derivative of glycerophosphate that contains at least one O-acyl, O-alkyl, or O-alkenyl group attached to the glycerol residue. [ISBN:[PHONE]]
112 | GO:0003333 | 0.0391643381115736 | amino acid transmembrane transport | biological_process | The directed movement of amino acids, organic acids containing one or more amino substituents across a membrane by means of some agent such as a transporter or pore. [GOC:dph, GOC:tb]
112 | GO:0016556 | 0.0416727619865674 | mRNA modification | biological_process | The covalent alteration of one or more nucleotides within an mRNA molecule to produce an mRNA molecule with a sequence that differs from that coded genetically. [GOC:curators]
112 | GO:0000912 | 0.042798053257125 | assembly of actomyosin apparatus involved in cytokinesis | biological_process | The assembly and arrangement of an apparatus composed of actin, [NAME], and associated proteins that will function in cytokinesis. [GOC:mtg_cell_cycle]
112 | GO:0000914 | 0.042798053257125 | phragmoplast assembly | biological_process | The formation of a structure composed of actin, [NAME], and associated proteins that will function in cytokinesis in cells that perform cytokinesis by cell plate formation. The structure usually contains antiparallel microtubules and membrane (often visible as vesicles). [GOC:clt]
112 | GO:0006074 | 0.042798053257125 | (1->3)-beta-D-glucan metabolic process | biological_process | The chemical reactions and pathways involving (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. [ISBN:[PHONE]]
112 | GO:0006075 | 0.042798053257125 | (1->3)-beta-D-glucan biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. [GOC:ai]
112 | GO:0006165 | 0.042798053257125 | nucleoside diphosphate phosphorylation | biological_process | The process of introducing a phosphate group into a nucleoside diphosphate to produce a nucleoside triphosphate. [GOC:ai]
112 | GO:0031032 | 0.042798053257125 | actomyosin structure organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures containing both actin and [NAME] or paramyosin. The myosin may be organized into filaments. [GOC:dph, GOC:jl, GOC:mah]
112 | GO:0036294 | 0.042798053257125 | cellular response to decreased oxygen levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting a decline in the level of oxygen. [GOC:al]
112 | GO:0071453 | 0.042798053257125 | cellular response to oxygen levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of oxygen. [GOC:mah]
112 | GO:0006778 | 0.04315049061468 | porphyrin-containing compound metabolic process | biological_process | The chemical reactions and pathways involving any member of a large group of derivatives or analogs of porphyrin. Porphyrins consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
112 | GO:0033013 | 0.04315049061468 | tetrapyrrole metabolic process | biological_process | The chemical reactions and pathways involving tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
112 | GO:0015996 | 0.0468650138874813 | chlorophyll catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of chlorophyll, any compound of magnesium complexed in a porphyrin (tetrapyrrole) ring and which functions as a photosynthetic pigment, into less complex products. [GOC:jl]
112 | [NAME] | 0.0468650138874813 | pigment catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a pigment, any general or particular coloring matter in living organisms, e.g. melanin. [ISBN:[PHONE]]
112 | GO:0046488 | 0.0468650138874813 | phosphatidylinositol metabolic process | biological_process | The chemical reactions and pathways involving phosphatidylinositol, any glycophospholipid in which a sn-glycerol 3-phosphate residue is esterified to the 1-hydroxyl group of 1D-myo-inositol. [CHEBI:28874, ISBN:[PHONE]]
112 | GO:0016143 | 0.0492513145546572 | S-glycoside metabolic process | biological_process | The chemical reactions and pathways involving S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
112 | GO:0019757 | 0.0492513145546572 | glycosinolate metabolic process | biological_process | The chemical reactions and pathways involving glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
112 | GO:0019760 | 0.0492513145546572 | glucosinolate metabolic process | biological_process | The chemical reactions and pathways involving glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. They are metabolized to a variety of toxic products which are most likely the cause of hepatocytic necrosis in animals and humans. [CHEBI:24279, GOC:curators]
112 | GO:0006787 | 0.0495457925845773 | porphyrin-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. [GOC:jl, ISBN:[PHONE]]
112 | GO:0033015 | 0.0495457925845773 | tetrapyrrole catabolic process | biological_process | The chemical reactions and pathways leading to the breakdown of tetrapyrroles, natural pigments containing four pyrrole rings joined by one-carbon units linking position 2 of one pyrrole ring to position 5 of the next. [CHEBI:26932, GOC:mah]
112 | GO:0051187 | 0.0495457925845773 | cofactor catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a cofactor, a substance that is required for the activity of an enzyme or other protein. [GOC:ai]
113 | GO:0009750 | 0.00940090235716703 | response to fructose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a fructose stimulus. [GOC:jl]
113 | GO:0009620 | 0.0120812892593181 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
113 | GO:0031063 | 0.0126319155740257 | regulation of histone deacetylation | biological_process | Any process that modulates the frequency, rate or extent of the removal of acetyl groups from histones. [GOC:mah]
113 | GO:0090311 | 0.0126319155740257 | regulation of protein deacetylation | biological_process | Any process that modulates the rate, frequency, or extent of protein deacetylation, the removal of an acetyl group from a protein amino acid. An acetyl group is CH3CO-, derived from acetic [ethanoic] acid. [GOC:tb]
113 | GO:1900490 | 0.0126319155740257 | positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]
113 | GO:1901999 | 0.0126319155740257 | homogentisate metabolic process | biological_process | The chemical reactions and pathways involving homogentisate. [GOC:TermGenie, PMID:22980205]
113 | GO:1902000 | 0.0126319155740257 | homogentisate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of homogentisate. [GOC:TermGenie, PMID:22980205]
113 | GO:2001215 | 0.0126319155740257 | regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that modulates the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:al]
113 | GO:0016558 | 0.0199519618867239 | protein import into peroxisome matrix | biological_process | The import of proteins into the peroxisomal matrix. A peroxisome targeting signal (PTS) binds to a soluble receptor protein in the cytosol, and the resulting complex then binds to a receptor protein in the peroxisome membrane and is imported. The cargo protein is then released into the peroxisome matrix. [ISBN:[PHONE], PMID:11687502, PMID:11988772]
113 | GO:0006625 | 0.0211223318221679 | protein targeting to peroxisome | biological_process | The process of directing proteins towards the peroxisome, usually using signals contained within the protein. [GOC:ai]
113 | GO:0072662 | 0.0211223318221679 | protein localization to peroxisome | biological_process | A process in which a protein is transported to, or maintained at, a location in a peroxisome. [GOC:ecd]
113 | GO:0072663 | 0.0211223318221679 | establishment of protein localization to peroxisome | biological_process | The directed movement of a protein to a specific location in a peroxisome. [GOC:mah]
113 | GO:0043574 | 0.0223297510065146 | peroxisomal transport | biological_process | Transport of substances into, out of or within a peroxisome, a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:jl]
113 | GO:0006471 | 0.0251062604756223 | protein ADP-ribosylation | biological_process | The transfer, from NAD, of ADP-ribose to protein amino acids. [GOC:pr, RESID:AA0040, RESID:AA0168, RESID:AA0169, RESID:AA0231, RESID:AA0237, RESID:AA0295]
113 | GO:0006559 | 0.0251062604756223 | L-phenylalanine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of phenylalanine, 2-amino-3-phenylpropanoic acid. [GOC:go_curators]
113 | GO:0006572 | 0.0251062604756223 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of tyrosine, an aromatic amino acid, 2-amino-3-(4-hydroxyphenyl)propanoic acid. [GOC:go_curators]
113 | GO:0007178 | 0.0251062604756223 | [NAME] receptor protein serine/threonine kinase signaling pathway | biological_process | A series of molecular signals initiated by the binding of an extracellular ligand to a receptor on the surface of the target cell where the receptor possesses serine/threonine kinase activity, and ending with regulation of a downstream cellular process, e.g. transcription. [GOC:mah, GOC:signaling]
113 | [NAME] | 0.0251062604756223 | malate transport | biological_process | The directed movement of malate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:krc]
113 | GO:0015908 | 0.0251062604756223 | fatty acid transport | biological_process | The directed movement of fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [GOC:ai]
113 | GO:0051341 | 0.0251062604756223 | regulation of oxidoreductase activity | biological_process | Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [EC:1.-.-.-, GOC:ai]
113 | GO:0051353 | 0.0251062604756223 | positive regulation of oxidoreductase activity | biological_process | Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. [GOC:ai]
113 | GO:0070141 | 0.0251062604756223 | response to UV-A | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 400 to 500 nm. [GOC:BHF, GOC:mah]
113 | GO:0071492 | 0.0251062604756223 | cellular response to UV-A | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a UV-A radiation stimulus. UV-A radiation (UV-A light) spans the wavelengths 400 to 500 nm. [GOC:mah]
113 | [NAME] | 0.0309107936806533 | aromatic amino acid family catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan). [GOC:go_curators]
113 | GO:0009744 | 0.0337578750113336 | response to sucrose stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a sucrose stimulus. [GOC:jl]
113 | GO:0034285 | 0.0337578750113336 | response to disaccharide stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a disaccharide stimulus. [GOC:sart]
113 | GO:0006206 | 0.0374249753544212 | [NAME] process | biological_process | The chemical reactions and pathways involving pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
113 | GO:0006208 | 0.0374249753544212 | [NAME] process | biological_process | The chemical reactions and pathways resulting in the breakdown of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases. [[NAME], GOC:go_curators]
113 | GO:0006212 | 0.0374249753544212 | uracil catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. [GOC:go_curators]
113 | GO:0010345 | 0.0374249753544212 | suberin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262]
113 | GO:0019860 | 0.0374249753544212 | uracil metabolic process | biological_process | The chemical reactions and pathways involving uracil, 2,4-dioxopyrimidine, one of the pyrimidine bases occurring in RNA, but not in DNA. [GOC:go_curators]
113 | GO:0071486 | 0.0374249753544212 | cellular response to high light intensity | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a high light intensity stimulus. [GOC:mah]
113 | GO:0072529 | 0.0374249753544212 | pyrimidine-containing compound catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a pyrimidine-containing compound, i.e. any compound that contains pyrimidine or a formal derivative thereof. [[NAME], GOC:mah]
113 | [NAME] | 0.0396966231138359 | intracellular protein transmembrane import | biological_process | The directed movement of proteins into an intracellular organelle, across a membrane. [GOC:jl]
113 | GO:0065002 | 0.0396966231138359 | intracellular protein transmembrane transport | biological_process | The directed movement of proteins in a cell, from one side of a membrane to another by means of some agent such as a transporter or pore. [GOC:isa_complete]
113 | GO:0071806 | 0.0396966231138359 | [NAME] | biological_process | The directed movement of a protein across a membrane by means of some agent such as a transporter or pore. [GOC:mah, GOC:vw]
113 | GO:0007031 | 0.04138073531195 | peroxisome organization | biological_process | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of a peroxisome. A peroxisome is a small, membrane-bounded organelle that uses dioxygen (O2) to oxidize organic molecules. [GOC:mah]
113 | GO:0009414 | 0.0477581330911501 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
113 | GO:0009415 | 0.0488477075513637 | response to water stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of water. [GOC:jl]
113 | GO:0006552 | 0.0495899772656318 | leucine catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of leucine, 2-amino-4-methylpentanoic acid. [GOC:ai]
113 | GO:0006935 | 0.0495899772656318 | chemotaxis | biological_process | The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis). [ISBN:[PHONE]]
113 | GO:0010143 | 0.0495899772656318 | cutin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of cutin, a waxy substance, which combined with cellulose forms a substance nearly impervious to water and constituting the cuticle in plants. [ISBN:[PHONE]]
113 | GO:0010183 | 0.0495899772656318 | [NAME] | biological_process | The process in which the growth of pollen tube is directed towards the female gametophyte. [GOC:lr]
113 | GO:0015740 | 0.0495899772656318 | C4-dicarboxylate transport | biological_process | The directed movement of a C4-dicarboxylate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A C4-dicarboxylate is the anion of a dicarboxylic acid that contains four carbon atoms. [GOC:krc, GOC:mah]
113 | GO:0042330 | 0.0495899772656318 | taxis | biological_process | The directed movement of a motile cell or organism in response to an external stimulus. [GOC:jl, ISBN:[PHONE]]
113 | GO:0046113 | 0.0495899772656318 | nucleobase catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid. [GOC:ai]
113 | GO:0050918 | 0.0495899772656318 | positive chemotaxis | biological_process | The directed movement of a motile cell or organism towards a higher concentration of a chemical. [GOC:ai, GOC:bf, GOC:isa_complete]
114 | GO:0000041 | 0.0039196146700377 | transition metal ion transport | biological_process | The directed movement of transition metal ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. A transition metal is an element whose atom has an incomplete d-subshell of extranuclear electrons, or which gives rise to a cation or cations with an incomplete d-subshell. Transition metals often have more than one valency state. Biologically relevant transition metals include vanadium, manganese, iron, copper, cobalt, nickel, molybdenum and silver. [ISBN:[PHONE]]
114 | [NAME] | 0.0042415265136699 | transcription from RNA polymerase II promoter | biological_process | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger [NAME] (mRNA) and certain small nuclear RNAs (snRNAs). [GOC:jl, GOC:txnOH, ISBN:[PHONE]]
114 | GO:0006952 | 0.00515205206808638 | defense response | biological_process | Reactions, triggered in response to the presence of a foreign body or the occurrence of an injury, which result in restriction of damage to the organism attacked or prevention/recovery from the infection caused by the attack. [GOC:go_curators]
114 | GO:0045454 | 0.00602375695121495 | cell redox homeostasis | biological_process | Any process that maintains the redox environment of a cell or compartment within a cell. [GOC:ai, GOC:dph, GOC:tb]
114 | GO:0015698 | 0.00607336179639684 | inorganic anion transport | biological_process | The directed movement of inorganic anions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic anions are atoms or small molecules with a negative charge which do not contain carbon in covalent linkage. [GOC:krc]
114 | GO:0010200 | 0.00688890601685693 | response to chitin | biological_process | A process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus. [GOC:sm]
114 | GO:0006914 | 0.00932190956367827 | autophagy | biological_process | The process in which cells digest parts of their own cytoplasm; allows for both recycling of macromolecular constituents under conditions of cellular stress and remodeling the intracellular structure for cell differentiation. [ISBN:[PHONE], PMID:11099404, PMID:9412464]
114 | GO:0006352 | 0.00949139012487375 | DNA-dependent transcription, initiation | biological_process | Any process involved in the assembly of the RNA polymerase preinitiation complex (PIC) at the core promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. The initiation phase ends just before and does not include promoter clearance, or release, which is the transition between the initiation and elongation phases of transcription. [GOC:jid, GOC:txnOH, PMID:18280161]
114 | GO:0009414 | 0.00957949412953922 | response to water deprivation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a water deprivation stimulus, prolonged deprivation of water. [GOC:lr]
114 | GO:0010310 | 0.014242163721769 | regulation of hydrogen peroxide metabolic process | biological_process | Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving hydrogen peroxide. [PMID:14765119]
114 | GO:0031348 | 0.0150087448566704 | negative regulation of defense response | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a defense response. [GOC:mah]
114 | GO:0000738 | 0.0151902782220006 | DNA catabolic process, exonucleolytic | biological_process | The chemical reactions and pathways resulting in the breakdown of DNA, involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of deoxyribonucleotides. [GOC:elh, GOC:mah]
114 | GO:0006367 | 0.0151902782220006 | transcription initiation from RNA polymerase II promoter | biological_process | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. [GOC:mah, GOC:txnOH]
114 | GO:0009439 | 0.0151902782220006 | cyanate metabolic process | biological_process | The chemical reactions and pathways involving cyanate, NCO-, the anion of cyanic acid. [ISBN:[PHONE]]
114 | GO:0009440 | 0.0151902782220006 | cyanate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of cyanate, NCO-, the anion of cyanic acid. [ISBN:[PHONE]]
114 | GO:0032434 | 0.0151902782220006 | regulation of proteasomal ubiquitin-dependent protein catabolic process | biological_process | Any process that modulates the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:mah]
114 | GO:0032436 | 0.0151902782220006 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the breakdown of a protein or peptide by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:mah]
114 | GO:0036369 | 0.0151902782220006 | transcription factor catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of a sequence-specific DNA binding transcription factor by hydrolysis of its peptide bonds, initiated by the covalent attachment of ubiquitin, and mediated by the proteasome. [GOC:al, GOC:vw, PMID:22833559]
114 | GO:0045862 | 0.0151902782220006 | positive regulation of proteolysis | biological_process | Any process that activates or increases the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein. [GOC:go_curators]
114 | GO:0061136 | 0.0151902782220006 | regulation of proteasomal protein catabolic process | biological_process | Any process that modulates the rate, frequency, or extent of the chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome. [GOC:dph, GOC:tb]
114 | GO:0080186 | 0.0151902782220006 | developmental vegetative growth | biological_process | The increase in size or mass of non-reproductive plant parts. [PO:0007134]
114 | GO:1900425 | 0.0151902782220006 | negative regulation of defense response to bacterium | biological_process | Any process that stops, prevents or reduces the frequency, rate or extent of defense response to bacterium. [GOC:TermGenie, PMID:22346749]
114 | GO:1900490 | 0.0151902782220006 | positive regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that activates or increases the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:TermGenie]
114 | GO:1901483 | 0.0151902782220006 | regulation of transcription factor catabolic process | biological_process | Any process that modulates the frequency, rate or extent of transcription factor catabolic process. [GOC:al, GOC:TermGenie, GOC:vw, PMID:22833559]
114 | GO:1901485 | 0.0151902782220006 | positive regulation of transcription factor catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of transcription factor catabolic process. [GOC:al, GOC:TermGenie, GOC:vw, PMID:22833559]
114 | GO:1901800 | 0.0151902782220006 | positive regulation of proteasomal protein catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of proteasomal protein catabolic process. [GOC:BHF, GOC:rl, GOC:TermGenie, PMID:21669198]
114 | GO:2001215 | 0.0151902782220006 | regulation of hydroxymethylglutaryl-CoA reductase (NADPH) activity | biological_process | Any process that modulates the frequency, rate or extent of hydroxymethylglutaryl-CoA reductase (NADPH) activity. [GOC:al]
114 | GO:0048583 | 0.0163533290319698 | regulation of response to stimulus | biological_process | Any process that modulates the frequency, rate or extent of a response to a stimulus. Response to stimulus is a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus. [GOC:jid]
114 | GO:0050832 | 0.0197948396877453 | defense response to fungus | biological_process | Reactions triggered in response to the presence of a fungus that act to protect the cell or organism. [GOC:ai]
114 | GO:0009697 | 0.0203749797926354 | salicylic acid biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. [ISBN:[PHONE]]
114 | GO:0010106 | 0.0210821301413117 | cellular response to iron ion starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of iron ions. [GOC:mg]
114 | GO:0009755 | 0.021783340694782 | hormone-mediated signaling pathway | biological_process | A series of molecular signals mediated by the detection of a hormone. [GOC:sm]
114 | GO:2000377 | 0.023431990540312 | regulation of reactive oxygen species metabolic process | biological_process | Any process that modulates the frequency, rate or extent of reactive oxygen species metabolic process. [GOC:mah]
114 | GO:0009696 | 0.0256170494671542 | [NAME] process | biological_process | The chemical reactions and pathways involving of salicylic acid (2-hydroxybenzoic acid), a derivative of benzoic acid. [ISBN:[PHONE]]
114 | GO:0010876 | 0.0267541942157128 | lipid localization | biological_process | Any process in which a lipid is transported to, or maintained in, a specific location. [GOC:BHF, GOC:dph, GOC:tb]
114 | GO:0010351 | 0.0267758202059744 | lithium ion transport | biological_process | The directed movement of lithium ion into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [PMID:17270011]
114 | GO:0009620 | 0.0275958077568303 | response to fungus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from a fungus. [GOC:hb]
114 | GO:0042742 | 0.0275958077568303 | defense response to bacterium | biological_process | Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism. [GOC:jl]
114 | GO:0032870 | 0.0284133877510642 | cellular response to hormone stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus. [GOC:mah]
114 | GO:0043900 | 0.0287089422241806 | regulation of multi-organism process | biological_process | Any process that modulates the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
114 | GO:0071495 | 0.0295476097620567 | cellular response to endogenous stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus arising within the organism. [GOC:mah]
114 | GO:0009627 | 0.0299945512987882 | systemic acquired resistance | biological_process | The salicylic acid mediated response to a pathogen which confers broad spectrum resistance. [GOC:lr, ISBN:052143641]
114 | GO:0071310 | 0.03007103656351 | cellular response to organic substance | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus. [GOC:mah]
114 | GO:0002832 | 0.0301522042684816 | negative regulation of response to biotic stimulus | biological_process | Any process that stops, prevents, or reduces the frequency, rate, or extent of a response to biotic stimulus. [GOC:add]
114 | GO:0006048 | 0.0301522042684816 | UDP-N-acetylglucosamine biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. [GOC:ai]
114 | GO:0006308 | 0.0301522042684816 | DNA catabolic process | biological_process | The cellular DNA metabolic process resulting in the breakdown of DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long unbranched macromolecule formed from one or two strands of linked deoxyribonucleotides, the 3'-phosphate group of each constituent deoxyribonucleotide being joined in 3',5'-phosphodiester linkage to the 5'-hydroxyl group of the deoxyribose moiety of the next one. [GOC:go_curators, ISBN:[PHONE]]
114 | GO:0010107 | 0.0301522042684816 | potassium ion import | biological_process | The directed movement of potassium ions into a cell or organelle. [GOC:sm]
114 | GO:0015908 | 0.0301522042684816 | fatty acid transport | biological_process | The directed movement of fatty acids into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Fatty acids are aliphatic monocarboxylic acids liberated from naturally occurring fats and oils by hydrolysis. [GOC:ai]
114 | GO:0016145 | 0.0301522042684816 | S-glycoside catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of S-glycosides, any compound in which a glycosyl group has been substituted into a thiol group. [ISBN:[PHONE]]
114 | GO:0019759 | 0.0301522042684816 | glycosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glycosinolates, substituted thioglycosides found in rapeseed products and related cruciferae. [GOC:mah, http://www.gardeneaters.net/family_characteristics.html]
114 | GO:0019762 | 0.0301522042684816 | glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of glucosinolates, substituted thioglucosides found in rapeseed products and related cruciferae. [GOC:ai]
114 | GO:0030162 | 0.0301522042684816 | regulation of proteolysis | biological_process | Any process that modulates the frequency, rate or extent of the hydrolysis of a peptide bond or bonds within a protein. [GOC:mah]
114 | GO:0031331 | 0.0301522042684816 | positive regulation of cellular catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of substances, carried out by individual cells. [GOC:mah]
114 | GO:0032877 | 0.0301522042684816 | positive regulation of DNA endoreduplication | biological_process | Any process that activates or increases the frequency, rate or extent of DNA endoreduplication. [GOC:mah]
114 | GO:0042344 | 0.0301522042684816 | indole glucosinolate catabolic process | biological_process | The chemical reactions and pathways resulting in the breakdown of indole glucosinolates, sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan. [http://www.onelook.com]
114 | GO:0043901 | 0.0301522042684816 | negative regulation of multi-organism process | biological_process | Any process that stops, prevents, or reduces the frequency, rate or extent of a multi-organism process, a process in which an organism has an effect on another organism of the same or different species. [GOC:jl]
114 | GO:0045740 | 0.0301522042684816 | positive regulation of DNA replication | biological_process | Any process that activates or increases the frequency, rate or extent of DNA replication. [GOC:go_curators]
114 | GO:0048838 | 0.0301522042684816 | release of seed from dormancy | biological_process | The process in which the dormant state is broken in a seed. Dormancy is characterized by a suspension of physiological activity that can be reactivated upon release. [GOC:dph, GOC:jid, GOC:tb, ISBN:[PHONE]]
114 | GO:0051341 | 0.0301522042684816 | regulation of oxidoreductase activity | biological_process | Any process that modulates the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. [EC:1.-.-.-, GOC:ai]
114 | GO:0051353 | 0.0301522042684816 | positive regulation of oxidoreductase activity | biological_process | Any process that activates or increases the frequency, rate or extent of oxidoreductase activity, the catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. [GOC:ai]
114 | [NAME] | 0.0301522042684816 | positive regulation of cell division | biological_process | Any process that activates or increases the frequency, rate or extent of cell division. [GOC:ai]
114 | GO:0071366 | 0.0301522042684816 | cellular response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [GOC:mah]
114 | GO:0080036 | 0.0301522042684816 | regulation of cytokinin mediated signaling pathway | biological_process | Any process that modulates the frequency, rate or extent of signal transduction mediated by cytokinin. [GOC:dhl]
114 | GO:0097438 | 0.0301522042684816 | exit from dormancy | biological_process | The dormancy process that results in exit from dormancy. Dormancy (sometimes called a dormant state) is a suspension of most physiological activity and growth that can be reactivated. [GOC:PO_curators, PO_REF:00009]
114 | GO:1900424 | 0.0301522042684816 | regulation of defense response to bacterium | biological_process | Any process that modulates the frequency, rate or extent of defense response to bacterium. [GOC:TermGenie, PMID:22346749]
114 | GO:2000105 | 0.0301522042684816 | positive regulation of DNA-dependent DNA replication | biological_process | Any process that activates or increases the frequency, rate or extent of DNA-dependent DNA replication. [GOC:mah]
114 | GO:0016567 | 0.0321478905825762 | protein ubiquitination | biological_process | The process in which one or more ubiquitin groups are added to a protein. [GOC:ai]
114 | GO:0009607 | 0.0321888679809554 | response to biotic stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a biotic stimulus, a stimulus caused or produced by a living organism. [GOC:hb]
114 | GO:0051707 | 0.0321888679809554 | response to other organism | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism. [GOC:ai]
114 | GO:0009862 | 0.0355587763003446 | systemic acquired resistance, salicylic acid mediated signaling pathway | biological_process | The series of molecular signals mediated by salicylic acid involved in systemic acquired resistance. [GOC:jy]
114 | GO:0000160 | 0.0359094838321985 | phosphorelay signal transduction system | biological_process | A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins. [PMID:9191038]
114 | GO:0009267 | 0.0369383333978166 | cellular response to starvation | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of nourishment. [GOC:jl]
114 | GO:0042594 | 0.0397893618516496 | response to starvation | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a starvation stimulus, deprivation of nourishment. [GOC:go_curators]
114 | GO:0006826 | 0.0433114100568343 | iron ion transport | biological_process | The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. [GOC:ai]
114 | GO:0032446 | 0.0434015645113534 | protein modification by small protein conjugation | biological_process | A protein modification process in which one or more groups of a small protein, such as ubiquitin or a ubiquitin-like protein, are covalently attached to a target protein. [GOC:mah]
114 | GO:0070887 | 0.0442267375889398 | cellular response to chemical stimulus | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chemical stimulus. [GOC:mah]
114 | GO:0031669 | 0.0442960189005021 | cellular response to nutrient levels | biological_process | Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients. [GOC:mah]
114 | GO:0051704 | 0.0444617216040942 | multi-organism process | biological_process | A biological process which involves another organism of the same or different species. [GOC:jl]
114 | GO:0006047 | 0.0448891749332497 | UDP-N-acetylglucosamine metabolic process | biological_process | The chemical reactions and pathways involving UDP-N-acetylglucosamine, a substance composed of N-acetylglucosamine, a common structural unit of oligosaccharides, in glycosidic linkage with uridine diphosphate. [GOC:ai]
114 | GO:0006777 | 0.0448891749332497 | Mo-molybdopterin cofactor biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. [http://www.sunysb.edu/biochem/BIOCHEM/facultypages/schindelin/, ISSN:09498257]
114 | GO:0009915 | 0.0448891749332497 | [NAME] loading | biological_process | The process of loading sucrose into the sieve tube or companion cell of the phloem for long distance transport from source to sink. [GOC:sm]
114 | GO:0010345 | 0.0448891749332497 | suberin biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of suberin monomers and suberin polyesters. Suberin monomers are derived from fatty acids and trans-cinnamic acids. The monomers are then cross-linked with glycerols. [PMID:17259262]
114 | GO:0019720 | 0.0448891749332497 | Mo-molybdopterin cofactor metabolic process | biological_process | The chemical reactions and pathways involving the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands. [http://www.sunysb.edu/biochem/BIOCHEM/facultypages/schindelin/, ISSN:09498257]
114 | GO:0032324 | 0.0448891749332497 | molybdopterin cofactor biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [GOC:mah]
114 | GO:0042343 | 0.0448891749332497 | indole glucosinolate metabolic process | biological_process | The chemical reactions and pathways resulting in the formation of indole glucosinolates. Glucosinolates are sulfur-containing compounds that have a common structure linked to an R group derived from tryptophan; indoles are biologically active substances based on 2,3-benzopyrrole, formed during the catabolism of tryptophan. [http://www.onelook.com/]
114 | GO:0043545 | 0.0448891749332497 | molybdopterin cofactor metabolic process | biological_process | The chemical reactions and pathways involving the molybdopterin cofactor (Moco), essential for the catalytic activity of some enzymes, e.g. sulfite oxidase, xanthine dehydrogenase, and aldehyde oxidase. The cofactor consists of a mononuclear molybdenum (Mo-molybdopterin) or tungsten ion (W-molybdopterin) coordinated by one or two molybdopterin ligands. [ISSN:09498257]
114 | GO:0045732 | 0.0448891749332497 | positive regulation of protein catabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with or without the hydrolysis of peptide bonds. [GOC:go_curators]
114 | GO:0045793 | 0.0448891749332497 | positive regulation of cell size | biological_process | Any process that increases cell size. [GOC:go_curators]
114 | GO:0046349 | 0.0448891749332497 | amino sugar biosynthetic process | biological_process | The chemical reactions and pathways resulting in the formation of any amino sugar, sugars containing an amino group in place of a hydroxyl group. [CHEBI:28963, GOC:curators]
114 | GO:0046786 | 0.0448891749332497 | viral replication complex formation and maintenance | biological_process | The process of organizing and assembling viral replication proteins in preparation for viral replication. [ISBN:[PHONE]]
114 | GO:0051054 | 0.0448891749332497 | positive regulation of DNA metabolic process | biological_process | Any process that activates or increases the frequency, rate or extent of the chemical reactions and pathways involving DNA. [GOC:ai]
114 | GO:0051189 | 0.0448891749332497 | prosthetic group metabolic process | biological_process | The chemical reactions and pathways involving a prosthetic group, the non-amino acid portion of certain protein molecules. Prosthetic groups may be inorganic or organic and are usually required for the biological activity of the protein. [GOC:ai]
114 | GO:0070574 | 0.0448891749332497 | cadmium ion transmembrane transport | biological_process | A process in which a cadmium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore. [GOC:mah]
114 | GO:0080026 | 0.0448891749332497 | response to indolebutyric acid stimulus | biological_process | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an indolebutyric acid stimulus. [PMID:18725356]
114 | GO:0006595 | 0.0469768238212189 | polyamine metabolic process | biological_process | The chemical reactions and pathways involving polyamines, any organic compound containing two or more amino groups. [ISBN:[PHONE]]
114 | GO:0042537 | 0.0474538629729462 | benzene-containing compound metabolic process | biological_process | The chemical reactions and pathways involving benzene, [NAME], a volatile, very inflammable liquid, contained in the naphtha produced by the destructive distillation of coal, from which it is separated by fractional distillation, or any of its derivatives. [CHEBI:22712, GOC:jl]