Spreadsheet: c4edf801-85d3-4422-b005-402cbe4ce279
Sheet: Sheet1

Supplemental Table 1 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4 | Unnamed: 5 | Unnamed: 6 | Unnamed: 7 | Unnamed: 8 | Unnamed: 9
A) Nonhuman trace archive reads used in AluY alignment
Phyla | Trace archive database | Trace ID number | %ID AluY | Censor ID | Censor [NAME]
Actinopterygii | Danio_rerio_WGS | gnl|ti|[PHONE] | 99.29 | AluYc1 | 0.9965
Amphibia | Xenopus_tropicalis_WGS | gnl|ti|387034846 | 98.23 | AluYa4 | 0.9965
[NAME] | Helobdella_robusta_WGS | gnl|ti|[PHONE] | 97.17 | AluYi6 | 0.9929
Aves | Gallus_gallus_WGS | gnl|ti|[PHONE] | 93.97 | AluY | 0.9397
Bacteria | Bacillus_cereus_03bb108_WGS | gnl|ti|[PHONE] | 93.97 | AluY | 0.9397
Chordata | Ciona_intestinalis_WGS | gnl|ti|125028250 | 89.01 | AluSc | 0.9143
[NAME] | Saccharomyces_cerevisiae_WGS | gnl|ti|[PHONE] | 94.31 | AluY | 0.9431
[NAME] | Drosophila_melanogaster_OTHER | gnl|ti|170220900 | 89.36 | AluSc | 0.9286
Mammalia | Mus_musculus_WGS | gnl|ti|37504023 | 98.23 | AluYa5 | 0.9965
Nematoda | Caenorhabditis_briggsae_WGS | gnl|ti|36715443 | 94.35 | AluYc2 | 0.9435
Plantae | Zea_mays_WGS | gnl|ti|563012246 | 88.34 | AluSc | 0.9181
[NAME] | Chlamydomonas_reinhardtii_WGS | gnl|ti|335422661 | 89.36 | AluSc | 0.93
B) Contaminated NCBI Trace archive databases
10632_methanococcus_maripaludis_OTHER |  | Collinsella_aerofaciens_OTHER |  | Oryza_nivara_OTHER
10632_methanococcus_maripaludis_WGS |  | Copadichromis_conophorus_WGS |  | Oryza_officinalis_OTHER
11785_mus_musculus_WGS |  | Coprinus_cinereus_WGS |  | Oryza_sativa__indica_cultivar_group_OTHER
13044_ostreococcus_lucimarinus_CCE9901_WGS |  | Cryptococcus_neoformans_serotype_a_WGS |  | Oryza_sativa__japonica_cultivar_group_OTHER
13392_shewanella_putrefaciens_200_WGS |  | Cryptosporidium_hominis_OTHER |  | Oryzias_latipes_WGS
13623_bacillus_weihenstephanensis_kbab4_OT |  | Cryptosporidium_muris_WGS |  | Ostreococcus_lucimarinus_CCE9901_WGS
13694_environmental_sequence_WGS |  | Cryptosporidium_parvum_OTHER |  | Oxytricha_trifallax_EST
13696_environmental_sequence_WGS |  | Culex_pipiens_quinquefasciatus_OTHER |  | Oxytricha_trifallax_OTHER
13729_environmental_sequence_OTHER |  | Culex_pipiens_quinquefasciatus_WGS |  | Oxytricha_trifallax_WGS
13880_mimulus_guttatus_WGS |  | Cyanothece_sp__ccy_0110_WGS |  | Paenibacillus_larvae_WGS
15583_victivallis_vadensis_atcc_baa_548_WGS |  | Cynocephalus_variegatus_WGS |  | Pantoea_stewartii_OTHER
16084_trichomonas_vaginalis_WGS |  | Danio_rerio_OTHER |  | [NAME]
16727_toxoplasma_gondii_gt1_WGS |  | Danio_rerio_WGS |  | Paramecium_tetraurelia_OTHER
16729_uncultured_bacteria_WGS |  | Daphnia_pulex_WGS |  | Paramecium_tetraurelia_WGS
16851_pseudomonas_aeruginosa_WGS |  | Dasypus_novemcinctus_OTHER |  | Pediculus_humanus_corporis_WGS
18203_faecalibacterium_prausnitzii_WGS |  | Dasypus_novemcinctus_WGS |  | Pedobacter_sp__bal39_WGS
18213_anaerostipes_caccae_WGS |  | Dechloromonas_aromatica_rcb_OTHER |  | Pelobacter_carbinolicus_dsm_2380_WGS
18311_environmental_sequence_OTHER |  | Dechloromonas_aromatica_rcb_WGS |  | Pelobacter_propionicus_dsm_2379_WGS
18311_environmental_sequence_WGS |  | Dengue_virus_OTHER |  | Peromyscus_maniculatus_WGS
18313_fossil_metagenome_OTHER |  | Desulfotomaculum_reducens_mi-1_WGS |  | Petromyzon_marinus_OTHER
18361_callorhinchus_milii_WGS |  | Desulfovibrio_desulfuricans_g20_WGS |  | Petromyzon_marinus_WGS
18687_rattus_norvegicus_WGS |  | Dictyostelium_purpureum_WGS |  | Phaeodactylum_tricornutum_WGS
18693_rattus_norvegicus_WGS |  | Didelphis_virginiana_OTHER |  | Phakopsora_pachyrhizi_WGS
18809_methylobacterium_sp_4_46_OTHER |  | Dipodomys_ordii_WGS |  | Phanerochaete_chrysosporium_WGS
18809_methylobacterium_sp_4_46_WGS |  | Dorea_formicigenerans_OTHER |  | Phlebotomus_papatasi_WGS
18929_environmental_sequence_WGS |  | Dorea_longicatena_OTHER |  | Physarum_polycephalum_WGS
18931_environmental_sequence_WGS |  | Drosophila_ananassae_WGS |  | Physcomitrella_patens_WGS
18937_ralstonia_pickettii_12d_WGS |  | Drosophila_erecta_WGS |  | Phytophthora_infestans_OTHER
19671_fossil_metagenome_OTHER |  | Drosophila_grimshawi_WGS |  | Phytophthora_ramorum_WGS
19789_postia_placenta_WGS |  | Drosophila_mauritiana_OTHER |  | Phytophthora_sojae_WGS
9597_citrus_sinensis_WGS |  | Drosophila_melanogaster_OTHER |  | Pichia_stipitis_cbs_6054_WGS
Acanthamoeba_castellanii_OTHER |  | Drosophila_mojavensis_WGS |  | Plasmodium_falciparum_OTHER
Acidobacteria_bacterium_ellin345_WGS |  | Drosophila_simulans_WGS |  | Plasmodium_falciparum_WGS
Actinomyces_odontolyticus_OTHER |  | Drosophila_virilis_WGS |  | Plasmodium_knowlesi_WGS
Acyrthosiphon_pisum_EST |  | Drosophila_willistoni_WGS |  | Plasmodium_reichenowi_WGS
Acyrthosiphon_pisum_OTHER |  | Drosophila_yakuba_WGS |  | Plasmodium_vivax_sai-1_OTHER
Acyrthosiphon_pisum_WGS |  | Echinops_telfairi_WGS |  | Plasmodium_vivax_sai-1_WGS
Aedes_aegypti_WGS |  | Ectocarpus_siliculosus_WGS |  | Podospora_anserina_OTHER
Agaricus_bisporus_var__bisporus_WGS |  | Ehrlichia_canis_str__jake_WGS |  | Podospora_anserina_WGS
Alistipes_putredinis_WGS |  | Eimeria_tenella_WGS |  | Polypterus_bichir_OTHER
Alkaliphilus_metalliredigenes_qymf_WGS |  | [NAME] |  | Populus_balsamifera_WGS
Allomyces_macrogynus_OTHER |  | Entamoeba_dispar_WGS |  | Porphyromonas_gingivalis_w83_WGS
Allomyces_macrogynus_WGS |  | Entamoeba_histolytica_OTHER |  | Postia_placenta_WGS
Alvinella_pompejana_epibiont_metagenome_W |  | Entamoeba_histolytica_WGS |  | Pristionchus_pacificus_OTHER
Amoebidium_parasiticum_WGS |  | Enterococcus_faecalis_OTHER |  | Pristionchus_pacificus_WGS
Anabaena_variabilis_atcc_29413_WGS |  | Enterococcus_faecalis_v583_OTHER |  | Procavia_capensis_WGS
Anaerostipes_caccae_WGS |  | Enterococcus_faecalis_WGS |  | Prochlorococcus_sp__mit9312_WGS
Anaerotruncus_colihominis_WGS |  | Enterococcus_faecium_WGS |  | Pseudoalteromonas_tunicata_d2_WGS
Ancylostoma_caninum_EST |  | Epulopiscium_sp___n_t__morphotype_b__WGS |  | Pseudomonas_aeruginosa_WGS
Ancylostoma_caninum_WGS |  | Equus_caballus_EST |  | Pseudomonas_fluorescens_pfo-1_WGS
Anolis_carolinensis_WGS |  | Equus_caballus_OTHER |  | Pseudomonas_putida_gb-1_OTHER
Anopheles_gambiae_m_WGS |  | Equus_caballus_WGS |  | Pseudomonas_putida_kt2440_WGS
Anopheles_gambiae_s_WGS |  | Erinaceus_europaeus_WGS |  | Psychromonas_ingrahamii_37_WGS
Anopheles_gambiae_WGS |  | Escherichia_coli_o157_h7_str__ec4045_WGS |  | Psychromonas_sp__cnpt3_WGS
Aotus_nancymaae_OTHER |  | Escherichia_coli_o157_h7_str__ec4115_WGS |  | Pteropus_vampyrus_OTHER
Apis_mellifera_OTHER |  | Escherichia_coli_o157_h7_str__ec4196_WGS |  | Puccinia_graminis_WGS
Apis_mellifera_WGS |  | Eubacterium_dolichum_WGS |  | Ralstonia_metallidurans_ch34_WGS
Aplysia_californica_OTHER |  | Eubacterium_eligens_OTHER |  | Ralstonia_solanacearum_gmi1000_WGS
Aplysia_californica_WGS |  | Eubacterium_plautii_OTHER |  | Rattus_norvegicus_EST
Arabidopsis_lyrata_subsp__lyrata_WGS |  | Eubacterium_siraeum_WGS |  | Rattus_norvegicus_OTHER
Arabidopsis_thaliana_OTHER |  | Eubacterium_ventriosum_OTHER |  | Rattus_norvegicus_WGS
Arthrobacter_chlorophenolicus_a6_WGS |  | Eucalyptus_grandis_WGS |  | Reniera_sp__jgi-2005_WGS
Aspergillus_nidulans_WGS |  | Exiguobacterium_sp_255-15_WGS |  | Rhizopus_oryzae_WGS
Aspergillus_niger_atcc_1015_OTHER |  | Faecalibacterium_prausnitzii_WGS |  | Rhodnius_prolixus_WGS
Aspergillus_niger_atcc_1015_WGS |  | Felis_catus_OTHER |  | Rhodobacter_sphaeroides_atcc_17029_WGS
Bacillus_cereus_03bb108_WGS |  | Felis_catus_WGS |  | [NAME]
Bacillus_cereus_ah820_WGS |  | Fossil_metagenome_OTHER |  | Rhodobacterales_bacterium_htcc2255_WGS
Bacillus_cereus_g9842_WGS |  | Francisella_tularensis_OTHER |  | Rhodospirillum_rubrum_atcc_11170_WGS
Bacillus_coagulans_36d1_OTHER |  | Francisella_tularensis_WGS |  | Saccharomyces_bayanus_WGS
Bacillus_selenitireducens_mls10_WGS |  | Gallus_gallus_OTHER |  | Saccharomyces_cerevisiae_WGS
Bacillus_thuringiensis_serovar_konkukian_str__97-27_WGS |  | Gallus_gallus_WGS |  | Saccharomyces_mikatae_WGS
[NAME] |  | Gamma_proteobacterium_htcc5015_WGS |  | Saccharomyces_paradoxus_WGS
Bacillus_weihenstephanensis_kbab4_WGS |  | Gasterosteus_aculeatus_WGS |  | Saccoglossus_kowalevskii_OTHER
[NAME] |  | Gibberella_moniliformis_WGS |  | Saccoglossus_kowalevskii_WGS
Bacteroides_stercoris_WGS |  | Gibberella_zeae_WGS |  | Salmonella_enterica_subsp__enterica_serovar_agona_str__sl483_WGS
Bacteroides_uniformis_OTHER |  | Glycine_max_WGS |  | Salmonella_enterica_subsp__enterica_serovar_newport_str__sl254_WGS
Batrachochytrium_dendrobatidis_WGS |  | Gossypium_raimondii_WGS |  | Salmonella_enterica_subsp__enterica_serovar_saintpaul_str__sara29_WGS
Baumannia_cicadellinicola_OTHER |  | [NAME] |  | Salmonella_enterica_subsp__enterica_serovar_weltevreden_str__hi_n05_537_WGS
Bifidobacterium_adolescentis_WGS |  | Heliconius_melpomene_OTHER |  | Schistosoma_mansoni_WGS
Biomphalaria_glabrata_OTHER |  | Helobdella_robusta_WGS |  | Schizosaccharomyces_japonicus_WGS
Biomphalaria_glabrata_WGS |  | Hepatitis_c_virus_OTHER |  | Schmidtea_mediterranea_EST
Blastomyces_dermatitidis_WGS |  | Heterorhabditis_bacteriophora_EST |  | Schmidtea_mediterranea_OTHER
Borrelia_burgdorferi_zs7_WGS |  | Hyaloperonospora_parasitica_OTHER |  | Schmidtea_mediterranea_WGS
Borrelia_spielmanii_a14s_WGS |  | Hyaloperonospora_parasitica_WGS |  | Selaginella_moellendorffii_WGS
Bos_taurus_EST |  | Hydra_magnipapillata_WGS |  | Shewanella_oneidensis_mr-1_OTHER
Bos_taurus_OTHER |  | Hypocrea_jecorina_WGS |  | Shewanella_putrefaciens_200_WGS
Bos_taurus_WGS |  | Ixodes_scapularis_OTHER |  | Solanum_lycopersicum_OTHER
Botryotinia_fuckeliana_WGS |  | Ixodes_scapularis_WGS |  | Solanum_tuberosum_EST
Branchiostoma_floridae_OTHER |  | Kluyveromyces_yarrowii_WGS |  | Solanum_tuberosum_WGS
Branchiostoma_floridae_WGS |  | Kutzneria_sp__744_WGS |  | Sorex_araneus_OTHER
Brugia_malayi_WGS |  | Laccaria_bicolor_WGS |  | Sorex_araneus_WGS
Burkholderia_cenocepacia_hi2424_WGS |  | Lactobacillus_casei_atcc_334_WGS |  | Sorghum_bicolor_OTHER
Burkholderia_cepacia_r1808_WGS |  | [NAME] |  | Sorghum_bicolor_WGS
Burkholderia_fungorum_lb400_WGS |  | Lactobacillus_reuteri_jcm_1112_OTHER |  | Spermophilus_tridecemlineatus_OTHER
Burkholderia_mallei_prl_20_WGS |  | Lactococcus_lactis_subsp__cremoris_sk11_WGS |  | Spermophilus_tridecemlineatus_WGS
Burkholderia_multivorans_cgd2_WGS |  | Latimeria_menadoensis_OTHER |  | Spizellomyces_punctatus_WGS
Caenorhabditis_briggsae_OTHER |  | Leishmania_mexicana_WGS |  | Sporobolomyces_roseus_iam_13481_WGS
Caenorhabditis_briggsae_WGS |  | Listeria_monocytogenes_OTHER |  | Streptococcus_pneumoniae_cdc1087_00_WGS
Caenorhabditis_japonica_OTHER |  | Lottia_gigantea_WGS |  | Streptococcus_pneumoniae_cdc3059_06_WGS
Caenorhabditis_japonica_WGS |  | Loxodonta_africana_OTHER |  | Streptococcus_thermophilus_lmd-9_WGS
Caenorhabditis_remanei_OTHER |  | Macropus_eugenii_WGS |  | [NAME]
Caenorhabditis_remanei_WGS |  | Magnaporthe_grisea_OTHER |  | Streptomyces_sp__mg1_WGS
Caenorhabditis_sp__4__ce-ii__OTHER |  | Magnaporthe_grisea_WGS |  | Strongylocentrotus_purpuratus_OTHER
Caenorhabditis_sp__4__ce-ii__WGS |  | Magnetococcus_sp__mc-1_WGS |  | Strongylocentrotus_purpuratus_WGS
Callorhinchus_milii_WGS |  | Manihot_esculenta_EST |  | Strongyloides_ratti_WGS
Campylobacter_fetus_subsp__fetus_82-40_WGS |  | [NAME] |  | Sus_scrofa_OTHER
Candida_oleophila_WGS |  | Marine_gamma_proteobacterium_htcc2143_WG |  | Sus_scrofa_WGS
Canis_familiaris_OTHER |  | Marinomonas_sp__mwyl1_WGS |  | Synechococcus_sp__wh_7805_WGS
Canis_familiaris_WGS |  | Medicago_truncatula_OTHER |  | Tachyglossus_aculeatus_OTHER
Canis_latrans_WGS |  | Meloidogyne_incognita_WGS |  | Taeniopygia_guttata_OTHER
Capitella_sp__i_ecs-2004_WGS |  | Mesoplasma_florum_OTHER |  | Taeniopygia_guttata_WGS
Capnocytophaga_ochracea_dsm_7271_WGS |  | Mesorhizobium_sp_bnc1_WGS |  | Takifugu_rubripes_WGS
Capsella_rubella_WGS |  | Methanococcus_maripaludis_WGS |  | Tarsius_syrichta_WGS
Cavia_porcellus_OTHER |  | Methylobacterium_populi_bj001_WGS |  | Teladorsagia_circumcincta_WGS
Cavia_porcellus_WGS |  | [NAME] |  | Tetraodon_nigroviridis_OTHER
Chlamydia_muridarum_nigg_WGS |  | Methylobacterium_sp_4_46_OTHER |  | Tetraodon_nigroviridis_WGS
Chlamydomonas_reinhardtii_WGS |  | Methylobacterium_sp_4_46_WGS |  | Thalassiosira_pseudonana_WGS
Chlamydophila_caviae_gpic_WGS |  | Microcoleus_chthonoplastes_pcc_7420_WGS |  | Thioalkalivibrio_sp__hl_ebgr7_WGS
Chlorella_sp__nc64a_WGS |  | Micromonas_pusilla_WGS |  | Toxoplasma_gondii_gt1_WGS
Chlorobium_tepidum_tls_WGS |  | Microsporum_canis_WGS |  | Toxoplasma_gondii_me49_WGS
Choloepus_hoffmanni_WGS |  | Mimulus_guttatus_WGS |  | Toxoplasma_gondii_type_iii_WGS
Ciona_intestinalis_WGS |  | Monodelphis_domestica_OTHER |  | Treponema_denticola_atcc_35405_WGS
Ciona_savignyi_OTHER |  | Monodelphis_domestica_WGS |  | Tribolium_castaneum_WGS
Ciona_savignyi_WGS |  | Monosiga_brevicollis_WGS |  | Trichinella_spiralis_OTHER
Citrus_sinensis_WGS |  | Moorella_thermoacetica_atcc_39073_WGS |  | Trichinella_spiralis_WGS
Clostridium_bartlettii_WGS |  | Mortierella_verticillata_WGS |  | Trichodesmium_erythraeum_ims101_WGS
Clostridium_bolteae_atcc_baa_613_OTHER |  | Mouse_gut_metagenome_WGS |  | Trichomonas_vaginalis_WGS
Clostridium_bolteae_OTHER |  | Mus_musculus_EST |  | Trichophyton_equinum_WGS
Clostridium_cellulolyticum_h10_OTHER |  | Mus_musculus_OTHER |  | Trichoplax_adhaerens_WGS
Clostridium_difficile_OTHER |  | Mus_musculus_WGS |  | Trypanosoma_brucei_WGS
Clostridium_leptum_OTHER |  | Mycobacterium_sp__kms_WGS |  | Trypanosoma_cruzi_strain_esmeraldo_WGS
Clostridium_leptum_WGS |  | Mycobacterium_tuberculosis_cdc1551_WGS |  | Tupaia_belangeri_OTHER
Clostridium_perfringens_atcc_13124_WGS |  | Mycobacterium_tuberculosis_OTHER |  | Tursiops_truncatus_WGS
Clostridium_perfringens_e_str__jgs1987_WGS |  | Myotis_lucifugus_OTHER |  | Uncultured_bacteria_WGS
Clostridium_perfringens_str__nctc8239_WGS |  | Myotis_lucifugus_WGS |  | Ureaplasma_urealyticum_serovar_11_WGS
Clostridium_ramosum_WGS |  | Naegleria_gruberi_WGS |  | Ureaplasma_urealyticum_serovar_8_WGS
Clostridium_scindens_atcc_35704_WGS |  | Nasonia_vitripennis_WGS |  | Ureaplasma_urealyticum_serovar_9_WGS
Clostridium_scindens_OTHER |  | Nectria_haematococca_mpvi_WGS |  | Ustilago_maydis_WGS
Clostridium_sp__l2_50_OTHER |  | Nematostella_vectensis_WGS |  | Vicugna_vicugna_OTHER
Clostridium_sp__m62_1_OTHER |  | Neosartorya_fischeri_nrrl_181_WGS |  | Vicugna_vicugna_WGS
Clostridium_sp__ohilas_OTHER |  | Neospora_caninum_WGS |  | Vitis_vinifera_OTHER
Clostridium_sp__OTHER |  | Neurospora_crassa_OTHER |  | Vitis_vinifera_WGS
Clostridium_sp__ss2_1_OTHER |  | Neurospora_crassa_WGS |  | Volvox_carteri_f__nagariensis_WGS
Clostridium_spiroforme_OTHER |  | Neurospora_tetrasperma_fgsc_2509_WGS |  | Wolbachia_endosymbiont_of_drosophila_melanogaster_WGS
Clostridium_spiroforme_WGS |  | [NAME] |  | Xenopus_laevis_EST
Clostridium_symbiosum_OTHER |  | Ornithorhynchus_anatinus_WGS |  | Xenopus_tropicalis_OTHER
[NAME] |  | Oryctolagus_cuniculus_OTHER |  | Xenopus_tropicalis_WGS
[NAME] |  | Oryctolagus_cuniculus_WGS |  | [NAME]
Coccidioides_immitis_WGS |  | Oryza_glaberrima_OTHER |  | Zea_mays_OTHER
Coccidioides_posadasii_WGS |  | Oryza_granulata_OTHER |  | Zea_mays_WGS
Colletotrichum_graminicola_WGS |  | Oryza_minuta_OTHER
C) NCBI Assemblies with human contamination
B. taurus
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
NW_001499666.1 | BtUn_WGA12094_4 | contig | 2075 | 923..1205;564..836;complement(299..23) | AluSz,AluJo | Hsa chr 12 | NT_009775.17 | Hsa chr 12 | AC156455.1
NW_001499717.1 | BtUn_WGA12147_4 | contig | 2034 | complement(1135..848) | [NAME] | Hsa chr 17 | NW_001838454.2 | Hsa chr 17 | AC005988
NW_001499173.1 | BtUn_WGA11602_4 | contig | 2492 | complement(672..412);1407..1667;1104..1240;1224..1366;complement(557..495);1176..1211 | AluS,[NAME],[NAME] | Hsa chr 5 | NT_034772 | Hsa chr 5 | AC026727
NW_001500638.1 | BtUn_WGA13068_4 | contig | 1466 | complement(832..559) | [NAME] | Hsa chr 17 | NT_010783 | Hsa chr 17 | AC006487
NW_001500984.1 | BtUn_WGA13414_4 | contig | 1320 | complement(1271..988);complement(845..563);22..287 | AluJo,[NAME],AluY | Hsa chr 16 | NT_010393 | Hsa chr 16 | AC136948
NW_001499575.1 | BtUn_WGA12006_4 | contig | 2150 | complement(1808..1525);1990..2149 | AluSp,AluSb | Hsa chr 5 | NT_029289 | Hsa chr 5 | AC008681
NW_001500541.1 | BtUn_WGA12971_4 | contig | 1509 | complement(772..506) | AluS | Hsa chr 8 | NW_001839130 | Hsa chr 8 | AC113191
C.elegans
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
AC006760.2 | AC006760 | unordered pieces | 309026 | 219916..220199;complement(1700..1417);complement(124098..123812);complement(219215..218944);complement(30909..30626);complement(217670..217388);29490..29771;884..1168;complement(181..34);218406..218640;218565..218798;218723..218832;29477..29557;complement(237..182);31565..31651 | AluJ,AluY,AluSp | Hsa chr 7 | NT_007933 | Pan chr 7 | AC190422
AC006895.2 | AC006895 | unordered pieces | 201746 | 489..769;16..296 | [NAME],AluY | Hsa chr 7 | NT_007914.15 | Hsa chr 7 | AC006343.3
AC006911.1 | AC006911 | unordered pieces | 298804 | complement(3316..3271) | AluJ | Hsa chr 7 | NT_007819.17 | Hsa chr 7 | AC004694
D.discoideum
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
NZ_AAFI02000195.1 |  | 6 | 6233 | 5981..6233 | [NAME] | Hsa chr 3 | NT_005612.16 | Hsa chr3 | AC021064
NW_001263718.1 |  | 6 | 6233 | 5981..6233 | [NAME] | Hsa chr 3 | NT_005612.16 | Hsa chr3 | AC021064
D.rerio
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
NW_001883888.1 | DrUn_WGA6839_3 | contig | 2703 | 1790..2071;complement(2698..2397) | AluY | Hsa chr 6 | [NAME] | Hsa chr 6 | AL645940
[NAME] | Dr3_WGA287_3 | 3 | 296709 | complement(278179..277904) | AluSp | Hsa chr 17 | NT_010783 | Hsa chr 17 | AC090844
NW_001877121.1 | Dr11_WGA1051_3 | 11 | 154271 | complement(922..647);complement(2947..2705) | AluY,AluS | Hsa chr 4 | NT_167250 | Hsa chr 4 | AC021146
F.catus
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
ACBE01410795.1 | c402601627 | Contig1 | 1176 | complement(540..259) | AluYb3a2 | Hsa chr 9 | NT_008470 | Hsa chr 9 | AL445487
ACBE01033597.1 | c482501949 | Contig1 | 1587 | 522..757 | AluYi6 | Hsa chr 3 | NT_022517 | Hsa chr 3 | AC024168
ACBE01246619.1 | c450301090 | Contig2 | 9196 | 1..100 | AluS | Hsa chr 22 | NT_011520.12 | Hsa chr 22 | Z73420
ACBE01364855.1 | c583602887 | Contig1 | 1252 | 1106..1177 | AluJo | Hsa chr 10 | NT_030059 | Hsa chr 10 | AC010863
AANG01328690.1 | cont1.328689 |  | 799 | 467..547 | AluS | Hsa chr  5 | NT_006713 | Hsa chr  5 | AC109465
AANG01344889.1 | cont1.344888 |  | 928 | complement(926..817) | AluJr | Hsa chr  5 | NT_023133.13 | Hsa chr  5 | AC026777.4
AANG01187810.1 | cont1.187809 |  | 4746 | complement(1611..1556) | AluJr4 | Hsa chr 19 | NT_011109 | Hsa chr 19 | AC008395
ACBE01436581.1 | c408301179 | Contig1 | 5365 | 3291..3346 | AluJr4 | Hsa chr 19 | NT_011109 | Hsa chr 19 | AC008395
ACBE01591863.1 | c602102932 | Contig1 | 692 | complement(39..5)
AANG01307718.1 | [NAME] |  | 1331 | complement(40..1)
ACBE01462572.1 | c538703323 | Contig1 | 3328 | complement(3328..3289) | AluS | Hsa chr 1 | NT_004487.19 | Hsa chr 1 | AC093419
ACBE01200670.1 | c435801194 | Contig1 | 8423 | complement(3675..3601) | AluJo | Hsa chr 15 | NT_010194.17 | Hsa chr 15 | AC087473
AANG01136108.1 | cont1.136107 |  | 3828 | 3186..3260 | AluJo | Hsa chr 15 | NT_010194.17 | Hsa chr 15 | AC087473
ACBE01343681.1 | c496801987 | Contig1 | 8404 | complement(99..46) | AluJo | Hsa chr 11 | NT_009237.18 | Hsa chr 11 | AC084337.7
M. esculenta
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
DB950689.1 |  | cDNA | 457 | complement(292..18) | AluSx,AluJ
DB949974.1 |  | cDNA | 482 | complement(318..44) | AluSx,AluJ
DB942673.1 |  | cDNA | 578 | complement(319..49);522..578 | AluSx,AluJr
DB942376.1 |  | cDNA | 578 | complement(122..1) | AluY
FG806179.1 |  | cDNA | 184 | complement(177..21) | AluS
DB942079.1 |  | cDNA | 277 | complement(108..1) | AluY
FG805263.1 |  | cDNA | 150 | complement(143..1) | AluYi6
M. grisea
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
NW_001798830.1 | supercont5.161 | Contig | 270750 | complement(1670..1390);21108..21390;complement(3586..3314);2067..2350;25978..26212;complement(3249..2990);16132..16429;26065..26127;21091..21154 | [NAME],[NAME],AluY,AluSp | Hsa chr 18 | NT_010966.14 | Hsa chr 18 | AC110591.7
NW_001798760.1 | supercont5.33 | Contig | 11519 | complement(9352..9083);10388..10670;complement(6785..6515);11..213;complement(1455..1171);complement(3850..3722) | AluS,AluJo,AluJr4,AluSz6,AluY,[NAME],L1Hs | Hsa chr 18 | NT_010966.14 | Hsa chr 18 | AC116002.5
[NAME] | supercont5.163 | Contig | 22478 | 17007..17290;complement(3738..3458)12249..12517;complement(3442..3281);complement(3877..3689);21780..22050 | AluSp,AluSq10,AluJ | Hsa chr 18 | NT_010966.14 | Hsa chr 18 | AC116002.5
[NAME] | supercontig5.76 | Contig | 7430 | 2035..2316;complement(4384..4222) | [NAME] | Hsa chr 18 | NT_010966.14 | Hsa chr 18 | AC116002.5
NW_001798834.1 | supercontig5.40 | Contig | 11682 | complement(494..221) | AluSx | Hsa chr 18 | NT_010966.14 | Hsa chr 18 | AC116002.5
NW_001798772.1 | supercontig5.49 | Contig | 9224 | 8247..8478 | [NAME],AluS | Hsa chr 18 | NT_010966.14 | Hsa chr 18 | AC116002.5
NW_001798835.1 | supercontig5.41 | Contig | 10127 | complement(8807..8526) | AluJ | Hsa chr 18 | NT_010966.14 | Hsa chr 18 | AC116002.5
O. anatinus
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
NW_001720372.1 | OanUn_WGA125904_1 | Scfld276534 | 711 | complement(230..23) | [NAME] | Hsa chr 3 | NT_022517.18 | Hsa chr 3 | AC130472.2
NW_001722118.1 | OanUn_WGA127650_1 | Scfld279136 | 812 | 581..727 | [NAME] | Hsa chr 3 | NT_022517.18 | Hsa chr 3 | AC130472.2
NW_001607597.1 | OanUn_WGA13129_1 | Scfld118252 | 605 | complement(566..450);complement(367..282) | AluJ,AluS | Hsa chr 3 | NT_022517.18 | Hsa chr 3 | AC130472.2
NW_001654751.1 | OanUn_WGA60283_1 | Scfld182718 | 560 | complement(560..444);complement(361..276) | AluJ,AluS | Hsa chr 3 | NT_022517.18 | Hsa chr 3 | AC130472.2
NW_001718259.1 | OanUn_WGA123791_1 | Scfld273323 | 518 | complement(381..296) | AluJ | Hsa chr 3 | NT_022517.18 | Hsa chr 3 | AC130472.2
NW_001794301.1 | OanUn_WGA199833_1 | Ultra378 | 7624292 | complement(72201..72152);complement(72200..72151) | ALU
P. tetraurelia
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
NZ_CAAL01001273.1 |  |  | 2540 | [NAME]) | AluS | Hsa chr 14 | NT_026437.12 | Hsa chr 14 | AL122126.4
NZ_CAAL01001272.1 |  |  | 1628 | complement(952..669) | AluJo | Hsa chr 14 | NT_026437.12 | Hsa chr 14 | AL049777.5
P. trichocarpa
Accession Number | alternate ID | Chromosome | Length | Hits | Censor results | Human BlastN 90%+ | Accession | nonredundant BlastN | Accession
NW_001492486.1 | scaffold_337 |  | 72894 | 8898..9175;complement(39785..39504);24616..[NAME]..17598;19460..19742;complement(25948..25668);26857..27137;14385..14673;complement(40083..39801);complement(24558..24274);32655..32932;17626..17899;3568..3843;33967..34252;2429..2676;complement(40626..40356);complement(8683..8398);36058..36337;65576..65843;2979..3260;10347..10614;complement(24186..23987);complement(36829..36548);26247..26398;complement(4064..3929);38944..39255;3366..3526;8022..8286;34262..34423;complement(27404..27256);complement(34778..34646);complement(16950..16847);26252..26311;complement(39816..39724);complement(38773..38720);complement(40502..40447);complement(38810..38768);complement(36830..36754);38881..38942;39448..39380 | [NAME],AluS,[NAME],AluJ,AluSp | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138959.2
NW_001492402.1 | scaffold_442 |  | 50191 | 12083..12363;complement(23812..23526)24855..25133;complement(17290..17011);complement(44883..44603);11049..11328;49909..50191;34543..34826;41096..41378;complement(8611..8328);complement(19597..19312);complement(44450..44169);complement(9825..9545);5372..5644;complement(625..357)complement(40942..40669);complement(33304..33027);complement(39487..39230);complement(12731..12490);29940..30220;41545..41738;5855..6060;30689..30964;complement(40423..40149);complement(32997..32721);7911..8184;complement(40062..39846);complement(19072..18784);26894..27011;complement(39691..39562);complement(39166..38877);3..101;5260..5417;31304..31443;49802..49892;41398..41477;35234..35297;complement(34924..34824);195..279;34383..34504;6841..6923;complement(32317..32247);30688..30764;31296..31357;34362..34422;756..797;35227..35304;complement(44456..44375);complement(32313..32255);42890..42948;complement(19717..19661) | AluS,[NAME],[NAME],[NAME],AluJo,[NAME],SVA | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138959.2
NW_001492226.1 | scaffold_659 |  | 29575 | 19790..20071;complement(21199..20915);complement(6423..6140);complement(5793..5498)complement(13798..13520);11544..11823;12788..13074;20312..20583;7264..7506;complement(17128..16922)7579..7717;complement(18195..17923);complement(18375..18240)25152..25299;complement(13509..13347);complement(17578..17461);complement(19065..18871);complement(18942..18814);complement(11955..11839);comoplement(11525..11394);complement(13921..13742);25048..25121;27708..27767;19778..19845;18378..18454 | [NAME],AluS.AluSx,AluJ,AluY | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138959.2
NW_001492052.1 | scaffold_848 |  | 18963 | complement(6164..5887);16070..16351;17390..17671;complement(7342..7072);complement(12619..12335);complement(14095..13853);complement(18329..18094);11705..11975;complement(16772..16491);15477..15771;168..298;13997..13946 | AluJo,AluSc,[NAME],[NAME],AluSz6,AluSq | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC145102.2
NW_001492044.1 | scaffold_854 |  | 18783 | complement(8715..8431);complement(10466..10185);complement(8200..7912);291..575;9205..9485;complement(7545..7275);complement(6693..[NAME]12757);complement(11351..11199);complement(13008..12935) | [NAME],AluJo,[NAME],AluY,[NAME],AluJ,AluS,[NAME] | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC140134.2
NW_001491629.1 | scaffold_1325 |  | 13071 | complement(6400..6120);1783..2014;7163..7311;12925..13070 | AluJ,AluY,[NAME],AluS,AluSz6 | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138959.2
NW_002385280.1 | scaffold_20422 |  | 1058 | complement(277..2);complement(581..306) | [NAME],[NAME] | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138959.2
NW_001491810.1 | scaffold_1169 |  | 14726 | 4532..4810 | [NAME] | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138827.3
NW_002385128.1 | scaffold_20270 |  | 1063 | complement(739..451) | [NAME] | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138827.3
NW_002380650.1 | scaffold_15785 |  | 1238 | [NAME]..1) | AluSx | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC145129.2
NW_002379152.1 | scaffold_14286 |  | 13151 | complement(518..249) | AluJr | Hsa chr 5 | NT_006713.15 | Hsa chr 5 | AC138827.3
[NAME] | scaffold_22571 |  | 8552 | 6810..6891;50..175 | AluJ,AluY | Hsa chr 6 | NT_025741.15 | Hsa chr 6 | Z85999.1
NW_001490668.1 | scaffold_2554 |  | 7773 | 7721.7764 |  | Hsa chr 5 | NT_006576.16 | Hsa chr 5 | AC138821.2
D) UCSC Assembly human contamination
[NAME] | Build date | Contig/chromosome | Human chr | Notes
Cow | Oct 07 | chrUn.004.9272 | chr2
 |  | chrUn.004.9677 | chr5
 |  | chrUn.004.9765 | chr12
 |  | chrUn.004.9818 | chr17
 |  | chrUn.004.10644 | chr8
 |  | chrUn.004.10741 | chrX
 |  | chrUn.004.11087 | chr16
Platypus | March 07 | Contig19245 | chr6
 |  | Contig105522 | chr5
 |  | Contig162904 | chrX
 |  | Contig232347 | chr11
 |  | Contig247251 | chr11
X.Tropicalis | Aug 05 | scaffold_55 | chr16
 |  | scaffold_184 | chr16 | small segment embedded in the midst of [NAME] sequence (bounded by N's)
 |  | scaffold_1099 | chr16 | 300kb contig of human chromosome 16
 |  | scaffold_7921 | chr5 | 85kb contig of human chromosome 5
 |  | scaffold_14923 | chr5
Zebrafish | July 07 | Zv7_NA7155 | chr6
 |  | chr3 | chr17 | 3507bp Hsa chr17 embedded in ZFchr3 bounded by N's
 |  | chr11 | chr4 | 1st 5477bp Zebra fish chr11 is Human chromosome 4
Tetraodon | Feb 04 | chrUn_random | chr17
 |  | chrUn_random | chr17
 |  | chrUn_random | chr3
 |  | chrUn_random | chr14
C.Intestinalis | March 05 | chr03q | ? | no unique
 |  | chr03q | ? | no unique
 |  | chr04q | chr16 | most chr 16= NAD(P)H
 |  | chr07q | chr16
 |  | chr13q | chr16
 |  | scaffold_44 | chr16
 |  | scaffold_83 | chr16
 |  | scaffold_145 | chr16
 |  | scaffold_156 | chr16
 |  | scaffold_318 | chr16
 |  | scaffold_925 | chr16
 |  | scaffold_925 | chr16
 |  | scaffold_982 | chr16
 |  | scaffold_1280 | chr16
 |  | scaffold_1778 | chr16
 |  | scaffold_1899 | chr16
 |  | scaffold_2019 | chr16
 |  | scaffold_2035 | chr16
 |  | scaffold_2228 | chr16
 |  | scaffold_2233 | chr16
 |  | scaffold_2292 | chr5
 |  | scaffold_3635 | chr16
 |  | scaffold_4131 | chr16
 |  | scaffold_5577 | chr16
 |  | [NAME] | chr5
 |  | scaffold_6415 | chr5 | lamin B1 gene (LMNB1)
 |  | scaffold_6527 | chr16
 |  | scaffold_6699 | chr16
 |  | [NAME] | chr16
 |  | scaffold_6863 | chr16
 |  | scaffold_7300 | chr16
 |  | scaffold_7509 | chr16
 |  | scaffold_7934 | chr16
 |  | scaffold_8016 | chr16
 |  | scaffold_8432 | chr16
S.purpuratus | Sep 06 | Scaffold11308 | chr4
 |  | Scaffold40009 | chrX
C.brenneri | Feb 08 | chrUn | chr2
P.pacificus | Feb 07 | chrUn | chr9
 |  | chrUn | chr16
 |  | chrUn | chr7 | CNTNAP2 - contactin associated proein-like 2
 |  | chrUn | chr12? | no unique
 |  | chrUn | chr19
 |  | chrUn | chr5? | no unique
 |  | chrUn | chr6? | no unique
 |  | chrUn | chr9
D.melanogaster | April 06 | chrUextra | chr16 | [NAME] protein
 |  | chrUextra | chr16? | no unique
 |  | chrUextra | chr16? | no unique
 |  | chrUextra | chr16
 |  | chrUextra | chr16
D.simulans | April 05 | chrU | chr19
A.mellifera | Jan 05 | GroupUn | chr4
 |  | GroupUn | chr12
 |  | GroupUn | chrX
 |  | GroupUn | chrX