Spreadsheet: 014fad72-facc-458e-ab8f-47c5329ef921
Sheet: S3. Illumina GBM Amp

Table S3.  GBM amplification events identified by [NAME]*
*Coordinates based on hg18 (NCBI Build 36, March 2006)
Sample | Chromosome Region | Chromosome | Start | Stop | Event | Length | Genes | Probes | Cytoband | [NAME]
212 | chr1:147,305,744-148,101,268 | 1 | 147305744 | 148101268 | High Copy Gain | 795525 | 14 | 10 | q21.1 - q21.2 | FCGR1A, FCGR1C, HIST2H2AA3, HIST2H2AA4, [NAME], HIST2H3A, HIST2H3C, HIST2H3D, HIST2H4A, HIST2H4B, LOC388692, LOC728855, PPIAL4A, PPIAL4C
212 | chr1:187,166,355-197,519,234 | 1 | 187166355 | 197519234 | High Copy Gain | 10352880 | 31 | 1466 | [NAME] | ASPM, ATP6V1G3, B3GALT2, C1orf53, CDC73, CFH, CFHR1, CFHR2, [NAME], CFHR4, CFHR5, CRB1, DENND1B, F13B, FAM5C, GLRX2, KCNT2, [NAME], [NAME], MIR181A1, MIR181B1, NEK7, PTPRC, RGS1, RGS13, RGS18, RGS2, RGS21, TROVE2, [NAME], ZBTB41
212 | chr2:4,025,061-4,031,633 | 2 | 4025061 | 4031633 | High Copy Gain | 6573 | 0 | 2 | p25.3
212 | chr2:171,429,491-171,436,056 | 2 | 171429491 | 171436056 | High Copy Gain | 6566 | 0 | 2 | q31.1
212 | chr2:211,231,555-211,236,052 | 2 | 211231555 | 211236052 | High Copy Gain | 4498 | 1 | 2 | q34 | CPS1
212 | chr3:1,606,584-1,607,460 | 3 | 1606584 | 1607460 | High Copy Gain | 877 | 0 | 2 | p26.3
212 | chr3:84,465,279-84,506,349 | 3 | 84465279 | 84506349 | High Copy Gain | 41071 | 0 | 2 | p12.1
212 | chr3:173,597,307-183,789,365 | 3 | 173597307 | 183789365 | High Copy Gain | 10192059 | 27 | 1691 | q26.31 - q26.33 | ACTL6A, CCDC39, DNAJC19, ECT2, FNDC3B, FXR1, [NAME], GNB4, KCNMB2, KCNMB3, MFN1, MRPL47, NAALADL2, [NAME], NDUFB5, NLGN1, PEX5L, PIK3CA, [NAME], SOX2OT, SPATA16, [NAME], TNFSF10, TTC14, USP13, [NAME], [NAME]
212 | chr3:189,239,822-189,242,345 | 3 | 189239822 | 189242345 | High Copy Gain | 2524 | 0 | 2 | q27.3
212 | chr4:9,077,709-9,110,161 | 4 | 9077709 | 9110161 | High Copy Gain | 32453 | 1 | 2 | p16.1 | [NAME]
212 | chr4:27,934,292-27,942,649 | 4 | 27934292 | 27942649 | High Copy Gain | 8358 | 0 | 2 | p15.1
212 | chr4:167,887,327-167,894,204 | 4 | 167887327 | 167894204 | High Copy Gain | 6878 | 1 | 2 | q32.3 | SPOCK3
212 | chr5:23,895,212-23,910,739 | 5 | 23895212 | 23910739 | High Copy Gain | 15528 | 0 | 2 | p14.2
212 | chr5:29,407,627-29,426,156 | 5 | 29407627 | 29426156 | High Copy Gain | 18530 | 0 | 2 | p13.3
212 | chr5:89,033,526-89,038,695 | 5 | 89033526 | 89038695 | High Copy Gain | 5170 | 0 | 2 | [NAME]
212 | chr5:89,430,215-89,441,026 | 5 | 89430215 | 89441026 | High Copy Gain | 10812 | 0 | 2 | [NAME]
212 | chr6:4,097,326-4,098,656 | 6 | 4097326 | 4098656 | High Copy Gain | 1331 | 0 | 2 | p25.2
212 | chr6:23,078,857-23,093,982 | 6 | 23078857 | 23093982 | High Copy Gain | 15126 | 0 | 2 | p22.3
212 | chr7:16,631,398-16,633,769 | 7 | 16631398 | 16633769 | High Copy Gain | 2372 | 1 | 2 | p21.1 | ANKMY2
212 | chr7:88,879,318-88,894,544 | 7 | 88879318 | 88894544 | High Copy Gain | 15227 | 0 | 2 | q21.13
212 | chr7:120,960,288-120,968,735 | 7 | 120960288 | 120968735 | High Copy Gain | 8448 | 0 | 2 | q31.32
212 | chr7:126,425,041-126,426,636 | 7 | 126425041 | 126426636 | High Copy Gain | 1596 | 1 | 2 | q31.33 | GRM8
212 | chr7:129,227,307-129,238,135 | 7 | 129227307 | 129238135 | High Copy Gain | 10829 | 0 | 2 | [NAME]
212 | chr8:77,394,135-77,399,851 | 8 | 77394135 | 77399851 | High Copy Gain | 5717 | 0 | 2 | q21.11
212 | chr9:12,272,599-12,276,531 | 9 | 12272599 | 12276531 | High Copy Gain | 3933 | 0 | 2 | p23
212 | chr9:12,485,158-12,488,754 | 9 | 12485158 | 12488754 | High Copy Gain | 3597 | 0 | 2 | p23
212 | chr9:21,377,716-21,388,324 | 9 | 21377716 | 21388324 | High Copy Gain | 10609 | 0 | 2 | p21.3
212 | chr10:59,409,739-59,410,539 | 10 | 59409739 | 59410539 | High Copy Gain | 801 | 0 | 2 | q21.1
212 | chr10:89,851,405-89,855,166 | 10 | 89851405 | 89855166 | High Copy Gain | 3762 | 0 | 2 | q23.31
212 | chr10:131,962,394-131,967,925 | 10 | 131962394 | 131967925 | High Copy Gain | 5532 | 0 | 2 | q26.3
212 | chr11:86,306,268-86,315,443 | 11 | 86306268 | 86315443 | High Copy Gain | 9176 | 0 | 2 | q14.2
212 | chr12:16,595,933-17,973,948 | 12 | 16595933 | 17973948 | High Copy Gain | 1378016 | 1 | 220 | p12.3 | LMO3
212 | chr12:31,263,053-31,273,608 | 12 | 31263053 | 31273608 | High Copy Gain | 10556 | 0 | 2 | p11.21
212 | chr12:67,986,827-67,991,835 | 12 | 67986827 | 67991835 | High Copy Gain | 5009 | 0 | 2 | q15
212 | chr13:101,558,984-101,561,538 | 13 | 101558984 | 101561538 | High Copy Gain | 2555 | 1 | 2 | q33.1 | FGF14
212 | chr13:108,895,798-108,910,704 | 13 | 108895798 | 108910704 | High Copy Gain | 14907 | 0 | 2 | q33.3
212 | chr15:34,106,625-34,110,440 | 15 | 34106625 | 34110440 | High Copy Gain | 3816 | 0 | 2 | q14
212 | chr15:57,160,675-57,164,280 | 15 | 57160675 | 57164280 | High Copy Gain | 3606 | 1 | 2 | [NAME] | RNF111
212 | chr15:68,368,011-68,379,244 | 15 | 68368011 | 68379244 | High Copy Gain | 11234 | 0 | 2 | q23
212 | chr17:66,728,960-66,746,635 | 17 | 66728960 | 66746635 | High Copy Gain | 17676 | 0 | 2 | q24.3
212 | chr19:563,848-574,731 | 19 | 563848 | 574731 | High Copy Gain | 10884 | 2 | 2 | p13.3 | HCN2, POLRMT
212 | chr19:18,467,986-18,484,703 | 19 | 18467986 | 18484703 | High Copy Gain | 16718 | 1 | 2 | p13.11 | ELL
212 | chr19:21,746,276-21,759,456 | 19 | 21746276 | 21759456 | High Copy Gain | 13181 | 0 | 2 | p12
212 | chr20:23,835,714-23,854,414 | 20 | 23835714 | 23854414 | High Copy Gain | 18701 | 0 | 2 | p11.21
212 | chr21:31,733,124-31,739,225 | 21 | 31733124 | 31739225 | High Copy Gain | 6102 | 1 | 2 | q22.11 | [NAME]
212 | [NAME] | 21 | 32461669 | 32468752 | High Copy Gain | 7084 | 0 | 2 | q22.11
212 | chrX:31,780,684-31,785,497 | X | 31780684 | 31785497 | High Copy Gain | 4814 | 1 | 2 | p21.1 | DMD
212 | chrX:41,650,616-41,689,134 | X | 41650616 | 41689134 | High Copy Gain | 38519 | 1 | 2 | p11.4 | CASK
212 | chrX:90,501,537-90,552,475 | X | 90501537 | 90552475 | High Copy Gain | 50939 | 0 | 2 | q21.31
450 | chr7:53,858,421-55,706,601 | 7 | 53858421 | 55706601 | High Copy Gain | 1848181 | 7 | 406 | p12.1 - p11.2 | EGFR, HPVC1, [NAME], LOC442308, SEC61G, VOPP1, VSTM2A
450 | chr9:96,336,224-96,735,738 | 9 | 96336224 | 96735738 | High Copy Gain | 399515 | 4 | 70 | q22.32 | C9orf3, [NAME], FBP2, MIR2278
450 | chr20:51,628,726-51,880,874 | 20 | 51628726 | 51880874 | High Copy Gain | 252149 | 1 | 68 | q13.2 | ZNF217
450 | chr20:52,405,139-53,015,801 | 20 | 52405139 | 53015801 | High Copy Gain | 610663 | 1 | 141 | q13.2 | DOK5
457 | chr1:6,547,589-6,653,673 | 1 | 6547589 | 6653673 | High Copy Gain | 106085 | 6 | 72 | p36.31 | DNAJC11, KLHL21, PHF13, TAS1R1, THAP3, ZBTB48
457 | chr1:6,832,491-6,921,329 | 1 | 6832491 | 6921329 | High Copy Gain | 88839 | 1 | 27 | p36.31 | CAMTA1
457 | chr1:7,094,894-7,169,109 | 1 | 7094894 | 7169109 | High Copy Gain | 74216 | 1 | 27 | p36.31 - p36.23 | CAMTA1
457 | chr1:7,350,492-7,984,671 | 1 | 7350492 | 7984671 | High Copy Gain | 634180 | 6 | 165 | p36.23 | CAMTA1, PARK7, PER3, TNFRSF9, UTS2, [NAME]
457 | chr1:8,103,923-8,126,242 | 1 | 8103923 | 8126242 | High Copy Gain | 22320 | 0 | 14 | p36.23
457 | chr1:14,059,454-14,314,148 | 1 | 14059454 | 14314148 | High Copy Gain | 254695 | 0 | 136 | p36.21
457 | chr4:189,562,340-189,604,908 | 4 | 189562340 | 189604908 | High Copy Gain | 42569 | 0 | 27 | q35.2
457 | chr4:189,946,977-191,273,063 | 4 | 189946977 | 191273063 | High Copy Gain | 1326087 | 9 | 170 | q35.2 | DUX4, FRG1, FRG2, [NAME], [NAME], LOC653545, LOC653548, [NAME], TUBB4Q
457 | chr5:162,845,642-162,894,942 | 5 | 162845642 | 162894942 | High Copy Gain | 49301 | 2 | 22 | q34 | HMMR, MAT2B
457 | chr5:163,094,784-163,408,932 | 5 | 163094784 | 163408932 | High Copy Gain | 314149 | 0 | 93 | q34
457 | chr5:165,807,756-165,919,833 | 5 | 165807756 | 165919833 | High Copy Gain | 112078 | 0 | 40 | q34
457 | [NAME] | 5 | 166293100 | 166606237 | High Copy Gain | 313138 | 0 | 44 | q34
457 | chr5:166,971,350-167,034,634 | 5 | 166971350 | 167034634 | High Copy Gain | 63285 | 1 | 21 | q34 | ODZ2
457 | chr7:54,549,934-55,447,689 | 7 | 54549934 | 55447689 | High Copy Gain | 897756 | 4 | 333 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
457 | chr7:77,790,834-90,279,736 | 7 | 77790834 | 90279736 | High Copy Gain | 12488903 | 35 | 2187 | q21.11 - q21.13 | ABCB1, ABCB4, ADAM22, C7orf23, C7orf63, CACNA2D1, CD36, CDK14, CLDN12, CROT, DBF4, [NAME], DPY19L2P4, [NAME], GNAT3, GRM3, GTPBP10, HGF, KIAA1324L, MAGI2, MGC26647, PCLO, RPL13AP17, RUNDC3B, SEMA3A, SEMA3C, [NAME], [NAME], SLC25A40, SRI, STEAP1, [NAME], STEAP4, TP53TG1, ZNF804B
457 | chr7:131,360,250-131,599,555 | 7 | 131360250 | 131599555 | High Copy Gain | 239306 | 1 | 133 | q32.3 | PLXNA4
457 | chr10:44,188,114-44,191,311 | 10 | 44188114 | 44191311 | High Copy Gain | 3198 | 1 | 2 | q11.21 | CXCL12
457 | chr17:62,889,331-62,980,744 | 17 | 62889331 | 62980744 | High Copy Gain | 91414 | 1 | 40 | q24.2 | PITPNC1
519 | chr7:14,267,499-14,881,052 | 7 | 14267499 | 14881052 | High Copy Gain | 613554 | 1 | 188 | p21.2 | DGKB
519 | chr7:24,792,218-25,558,319 | 7 | 24792218 | 25558319 | High Copy Gain | 766102 | 4 | 268 | p15.3 - p15.2 | C7orf31, CYCS, NPVF, OSBPL3
519 | chr7:54,728,551-56,519,417 | 7 | 54728551 | 56519417 | High Copy Gain | 1790867 | 18 | 361 | p11.2 | CCT6A, CHCHD2, EGFR, FKBP9L, GBAS, LANCL2, LOC389493, LOC442308, LOC650226, MRPS17, PHKG1, PSPH, SEC61G, SEPT14, SNORA15, SUMF2, VOPP1, ZNF713
522 | chr12:835,173-893,897 | 12 | 835173 | 893897 | High Copy Gain | 58725 | 3 | 15 | p13.33 | HSN2, RAD52, [NAME]
522 | chr12:3,737,511-4,444,647 | 12 | 3737511 | 4444647 | High Copy Gain | 707137 | 5 | 199 | p13.32 | C12orf5, CCND2, FGF23, [NAME], PARP11
522 | chr13:105,616,192-109,325,518 | 13 | 105616192 | 109325518 | High Copy Gain | 3709327 | 8 | 1040 | q33.2 - q34 | ABHD13, ARGLU1, EFNB2, FAM155A, IRS2, [NAME], MYO16, TNFSF13B
529 | chr3:101,804,591-101,930,842 | 3 | 101804591 | 101930842 | High Copy Gain | 126252 | 2 | 43 | q12.2 | GPR128, TFG
529 | chr6:2,818,832-2,880,938 | 6 | 2818832 | 2880938 | High Copy Gain | 62107 | 1 | 25 | p25.2 | SERPINB9
529 | chr6:10,750,885-12,521,240 | 6 | 10750885 | 12521240 | High Copy Gain | 1770356 | 15 | 796 | p24.2 - p24.1 | C6orf105, C6orf52, EDN1, ELOVL2, GCM2, HERV-FRD, HIVEP1, LOC221710, MAK, [NAME], PAK1IP1, SYCP2L, TMEM14B, TMEM14C, TMEM170B
529 | chr6:19,977,396-20,865,719 | 6 | 19977396 | 20865719 | High Copy Gain | 888324 | 3 | 368 | p22.3 | CDKAL1, E2F3, [NAME]
529 | chr6:25,811,958-26,142,336 | 6 | 25811958 | 26142336 | High Copy Gain | 330379 | 13 | 190 | [NAME] | HIST1H1A, [NAME], HIST1H2AB, HIST1H2BA, [NAME], HIST1H3B, HIST1H4A, HIST1H4B, SLC17A1, SLC17A2, SLC17A3, SLC17A4, TRIM38
529 | chr6:27,608,129-27,772,136 | 6 | 27608129 | 27772136 | High Copy Gain | 164008 | 0 | 53 | p22.1
529 | chr6:43,176,835-43,463,799 | 6 | 43176835 | 43463799 | High Copy Gain | 286965 | 8 | 116 | p21.1 | C6orf108, [NAME], CUL9, PTK7, [NAME], SRF, TTBK1, ZNF318
529 | chr6:54,236,951-55,088,015 | 6 | 54236951 | 55088015 | High Copy Gain | 851065 | 3 | 271 | p12.1 | C6orf142, FAM83B, TINAG
529 | chr7:0-6,714,549 | 7 | 0 | 6714549 | High Copy Gain | 6714550 | 72 | 2224 | p22.3 - p22.1 | ACTB, ADAP1, AIMP2, AMZ1, C7orf20, C7orf26, C7orf27, C7orf28A, C7orf50, C7orf70, CARD11, CHST12, COX19, CYP2W1, CYTH3, DAGLB, EIF2AK1, EIF3B, ELFN1, FAM20C, FBXL18, [NAME], FSCN1, FTSJ2, GNA12, GPER, GPR146, GRID2IP, HEATR2, INTS1, IQCE, [NAME], KIAA0415, KIAA1908, LFNG, LOC389458, MAD1L1, [NAME], MICALL2, MIR339, MIR589, MMD2, NUDT1, OCM, PAPOLB, PDGFA, PMS2, PRKAR1B, PSMG3, RAC1, RADIL, RBAK, [NAME], RNF216L, RSPH10B, RSPH10B2, [NAME], SLC29A4, SNX8, [NAME], TMEM184A, TNRC18, TTYH3, UNC84A, UNCX, USP42, WIPI2, [NAME], ZFAND2A, ZNF12, ZNF815, [NAME]
529 | chr7:25,208,914-34,685,561 | 7 | 25208914 | 34685561 | High Copy Gain | 9476648 | 67 | 3052 | p15.2 - p14.3 | ADCYAP1R1, AQP1, AVL9, BBS9, BMPER, C7orf16, C7orf41, C7orf71, CBX3, CCDC129, CHN2, [NAME], [NAME], [NAME], DKFZP586I1420, EVX1, [NAME], FKBP14, [NAME], GARS, GGCT, GHRHR, HIBADH, HNRNPA2B1, HOXA1, HOXA10, HOXA11, HOXA11AS, HOXA13, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, INMT, JAZF1, KBTBD2, KIAA0087, LOC402644, LOC441204, LOC441208, LOC646762, LSM5, MIR148A, MIR196B, MIR550-1, MIR550-2, NEUROD6, NFE2L3, NOD1, NPSR1, NPVF, NT5C3, [NAME], PLEKHA8, PRR15, RP9, RP9P, [NAME], [NAME], [NAME], TAX1BP1, TRIL, WIPF3, ZNRF2
529 | chr7:35,254,313-35,808,923 | 7 | 35254313 | 35808923 | High Copy Gain | 554611 | 3 | 247 | p14.3 - p14.2 | HERPUD2, [NAME], TBX20
529 | chr10:61,272,189-61,283,294 | 10 | 61272189 | 61283294 | High Copy Gain | 11106 | 1 | 2 | q21.2 | CCDC6
529 | chr10:99,114,432-99,117,729 | 10 | 99114432 | 99117729 | High Copy Gain | 3298 | 1 | 2 | q24.1 | RRP12
529 | chr13:72,025,591-72,030,826 | 13 | 72025591 | 72030826 | High Copy Gain | 5236 | 0 | 2 | q21.33
529 | chr16:81,333,210-81,334,040 | 16 | 81333210 | 81334040 | High Copy Gain | 831 | 1 | 2 | q23.3 | CDH13
529 | chr19:190,282-3,247,901 | 19 | 190282 | 3247901 | High Copy Gain | 3057620 | 109 | 1524 | p13.3 | [NAME], ADAMTSL5, ADAT3, AES, AMH, AP3D1, APC2, ARID3A, ATP5D, ATP8B3, AZU1, [NAME], BSG, BTBD2, C19orf20, [NAME], C19orf22, C19orf23, C19orf24, C19orf25, C19orf26, C19orf34, C19orf35, C19orf36, C19orf6, C2CD4C, CDC34, CFD, CIRBP, CNN2, CSNK1G2, DAZAP1, DIRAS1, DOT1L, EFNA2, ELANE, FAM108A1, FGF22, FSTL3, GADD45B, GAMT, GNA11, GNA15, GNG7, GPX4, GRIN3B, GZMM, HCN2, [NAME], [NAME], KISS1R, KLF16, LINGO3, LMNB2, [NAME], LSM7, MADCAM1, MBD3, MED16, MEX3D, MIDN, [NAME], MIR1227, MIR1909, MKNK2, MOBKL2A, MUM1, NCLN, NDUFS7, [NAME], ODF3L2, ONECUT3, PALM, PCSK4, PLEKHJ1, PLK5P, POLR2E, POLRMT, PPAP2C, PRSSL1, PRTN3, [NAME], REEP6, REXO1, RNF126, RPS15, S1PR4, SBNO2, SCAMP4, SF3A2, SGTA, SHC2, SLC39A3, SPPL2B, STK11, TCF3, THEG, THOP1, TIMM13, TLE2, TLE6, TMPRSS9, UQCR, WDR18, ZNF554, ZNF555, ZNF556, ZNF57, ZNF77
529 | chr22:19,752,683-19,754,501 | 22 | 19752683 | 19754501 | High Copy Gain | 1819 | 0 | 2 | q11.21
529 | chrX:13,604,567-13,622,762 | X | 13604567 | 13622762 | High Copy Gain | 18196 | 1 | 2 | [NAME] | RAB9A
529 | chrX:15,324,044-15,330,055 | X | 15324044 | 15330055 | High Copy Gain | 6012 | 1 | 2 | [NAME] | PIR
529 | chrX:22,032,373-22,042,083 | X | 22032373 | 22042083 | High Copy Gain | 9711 | 1 | 2 | p22.11 | PHEX
529 | chrX:24,172,469-24,176,056 | X | 24172469 | 24176056 | High Copy Gain | 3588 | 0 | 2 | p22.11
529 | chrX:31,783,324-31,787,505 | X | 31783324 | 31787505 | High Copy Gain | 4182 | 1 | 2 | p21.1 | DMD
529 | chrX:39,845,906-39,873,082 | X | 39845906 | 39873082 | High Copy Gain | 27177 | 1 | 2 | p11.4 | BCOR
529 | chrX:41,650,616-41,689,134 | X | 41650616 | 41689134 | High Copy Gain | 38519 | 1 | 2 | p11.4 | CASK
529 | chrX:58,571,648-59,500,000 | X | 58571648 | 59500000 | High Copy Gain | 928353 | 0 | 2 | [NAME]
529 | chrX:100,764,721-100,800,354 | X | 100764721 | 100800354 | High Copy Gain | 35634 | 2 | 6 | q22.1 | ARMCX2, ARMCX3
529 | chrX:113,353,796-113,378,146 | X | 113353796 | 113378146 | High Copy Gain | 24351 | 0 | 2 | q23
529 | chrX:118,241,149-118,288,282 | X | 118241149 | 118288282 | High Copy Gain | 47134 | 1 | 2 | q24 | PGRMC1
529 | chrX:148,164,718-148,187,909 | X | 148164718 | 148187909 | High Copy Gain | 23192 | 0 | 2 | q28
600 | chr7:54,807,979-55,416,763 | 7 | 54807979 | 55416763 | High Copy Gain | 608785 | 2 | 153 | p11.2 | EGFR, [NAME]
600 | chr12:56,205,160-57,528,672 | 12 | 56205160 | 57528672 | High Copy Gain | 1323513 | 22 | 231 | q13.3 - q14.1 | AGAP2, AVIL, B4GALNT1, CDK4, [NAME], CYP27B1, DCTN2, DTX3, FAM119B, GEFT, KIF5A, LOC100130776, [NAME], [NAME], [NAME], MIR26A2, OS9, PIP4K2C, SLC26A10, TSFM, TSPAN31, XRCC6BP1
600 | chr17:49,785,789-49,933,622 | 17 | 49785789 | 49933622 | High Copy Gain | 147834 | 0 | 32 | q22
664 | chr7:53,752,660-57,890,326 | 7 | 53752660 | 57890326 | High Copy Gain | 4137667 | 24 | 538 | p12.1 - p11.1 | CCT6A, CHCHD2, [NAME], [NAME], FKBP9L, GBAS, HPVC1, LANCL2, LOC389493, LOC442308, LOC642006, LOC650226, MRPS17, PHKG1, PSPH, SEC61G, SEPT14, SNORA15, SUMF2, VOPP1, VSTM2A, ZNF479, ZNF713, ZNF716
664 | chr7:61,713,770-62,043,029 | 7 | 61713770 | 62043029 | High Copy Gain | 329260 | 0 | 37 | q11.21
664 | chr7:66,416,458-71,956,505 | 7 | 66416458 | 71956505 | High Copy Gain | 5540048 | 6 | 1466 | q11.22 - q11.23 | AUTS2, CALN1, SBDSP, STAG3L4, TYW1B, WBSCR17
664 | chr7:74,890,448-75,892,444 | 7 | 74890448 | 75892444 | High Copy Gain | 1001997 | 17 | 381 | q11.23 | CCL24, CCL26, [NAME], [NAME], MDH2, PMS2L3, [NAME], POR, RHBDD2, SNORA14A, SPDYE5, SRCRB4D, [NAME], STYXL1, TMEM120A, YWHAG, ZP3
664 | chr7:76,666,912-96,595,800 | 7 | 76666912 | 96595800 | High Copy Gain | 19928889 | 84 | 5024 | q11.23 - q21.3 | ABCB1, ABCB4, ACN9, ADAM22, AKAP9, ANKIB1, ASB4, BET1, C7orf23, C7orf63, C7orf64, CACNA2D1, CALCR, [NAME], CCDC132, CCDC146, CD36, CDK14, [NAME], CLDN12, COL1A2, CROT, CYP51A1, DBF4, DLX5, DLX6, DLX6AS, [NAME], DPY19L2P4, DYNC1I1, FAM133B, FGL2, FZD1, GATAD1, GNAI1, GNAT3, GNG11, GNGT1, GRM3, GTPBP10, HEPACAM2, HGF, KIAA1324L, KRIT1, LOC401387, MAGI2, MGC16142, MGC26647, MIR489, MIR591, MIR653, MTERF, PCLO, [NAME], PEG10, [NAME], PHTF2, PION, PON1, PON2, PON3, [NAME], PTPN12, RPL13AP17, RSBN1L, RUNDC3B, SAMD9, SAMD9L, SEMA3A, SEMA3C, [NAME], SEMA3E, SGCE, SHFM1, SLC25A13, SLC25A40, SRI, STEAP1, [NAME], [NAME], TFPI2, TMEM60, TP53TG1, ZNF804B
664 | chr7:77,852,187-119,358,410 | 7 | 77852187 | 119358410 | High Copy Gain | 41506224 | 263 | 5145 | q21.11 - q31.31 | ABCB1, ABCB4, ACHE, ACN9, ACTL6B, ADAM22, AGFG2, AKAP9, ALKBH4, ANKIB1, ANKRD7, AP1S1, AP4M1, ARMC10, ARPC1A, ARPC1B, ASB4, ASNS, ASZ1, ATP5J2, ATXN7L1, AZGP1, BAIAP2L1, BCAP29, BET1, BHLHA15, BRI3, BUD31, C7orf23, C7orf38, C7orf43, C7orf47, C7orf51, C7orf52, C7orf53, C7orf59, C7orf60, C7orf61, C7orf63, C7orf64, C7orf66, CACNA2D1, CALCR, CAPZA2, [NAME], CAV1, CAV2, CBLL1, CCDC132, CD36, CDK14, [NAME], CFTR, CLDN12, CLDN15, CNPY4, COG5, COL1A2, COPS6, CPSF4, CROT, CTTNBP2, [NAME], CYP3A4, CYP3A43, CYP3A5, CYP3A7, CYP51A1, DBF4, DLD, DLX5, DLX6, DLX6AS, [NAME], DNAJB9, DNAJC2, DOCK4, DPY19L2P2, DPY19L2P4, DUS4L, DYNC1I1, EFCAB10, EIF3IP1, EMID2, EPHB4, EPO, FAM133B, FAM185A, FBXL13, FBXO24, [NAME], FLJ23834, FLJ36031, FOXP2, FZD1, GAL3ST4, GATAD1, GATS, [NAME], GJC3, [NAME], GNAT3, [NAME], GNG11, GNGT1, GPC2, GPR22, GPR85, GRM3, GTPBP10, HBP1, HEPACAM2, HGF, IFRD1, IMMP2L, KIAA1324L, [NAME], KRIT1, LAMB1, LAMB4, [NAME], [NAME], LOC100216545, LOC286002, LOC401387, [NAME], LOC723809, LRCH4, LRRC17, LRRN3, LRWD1, [NAME], MAGI2, MBLAC1, MCM7, MDFIC, MEPCE, MET, MGC16142, MGC26647, [NAME], [NAME], [NAME], MIR489, MIR591, MIR653, MIR93, MLL5, MOGAT3, MOSPD3, MTERF, MUC12, MUC17, MYH16, MYL10, NAMPT, NAPEPLD, [NAME], NRCAM, OCM2, OR2AE1, ORAI2, ORC5L, PCLO, PCOLCE, PDAP1, PDK4, PEG10, [NAME], PIK3CG, PILRA, PILRB, PLOD3, PMPCB, PMS2L1, PNPLA8, POLR2J, POLR2J2, POLR2J3, PON1, PON2, PON3, POP7, PPP1R3A, [NAME], PRKAR2B, PRKRIP1, PSMC2, PTCD1, PUS7, PVRIG, RABL5, RASA4, RELN, RINT1, RPL19P12, RUNDC3B, SAMD9, SAMD9L, SEMA3A, SEMA3C, [NAME], [NAME], [NAME], SGCE, [NAME], SHFM1, SLC12A9, SLC25A13, SLC25A40, SLC26A3, SLC26A4, SLC26A5, SMURF1, [NAME], [NAME], SPDYE6, SRI, SRPK2, SRRT, ST7, ST7OT1, ST7OT2, [NAME], ST7OT4, [NAME], STEAP1, [NAME], [NAME], SYPL1, TAC1, TAF6, TECPR1, TES, TFEC, TFPI2, TFR2, THAP5, TMEM130, TMEM168, TP53TG1, TRIM4, TRIM56, TRIP6, TRRAP, TSC22D4, UFSP1, UPLP, VGF, WNT2, ZAN, ZCWPW1, ZKSCAN1, ZKSCAN5, ZNF277, ZNF3, ZNF394, ZNF498, ZNF655, ZNF789, ZNF804B, [NAME], ZSCAN21
664 | chr7:102,840,319-142,927,531 | 7 | 102840319 | 142927531 | High Copy Gain | 40087213 | 246 | 7431 | q22.1 - q35 | AASS, ADCK2, AGBL3, AGK, AHCYL2, AKR1B1, AKR1B10, AKR1B15, AKR1D1, ANKRD7, ARF5, ASB15, ASZ1, ATP6V0A4, ATP6V1F, ATXN7L1, BCAP29, BPGM, BRAF, C7orf34, C7orf45, C7orf49, C7orf53, C7orf54, C7orf55, C7orf58, C7orf60, C7orf66, C7orf68, CADPS2, CALD1, CALU, CAPZA2, [NAME], [NAME], CAV2, CBLL1, CCDC136, CFTR, CHCHD3, CHRM2, CLCN1, CLEC2L, CLEC5A, CNOT4, COG5, COPG2, CPA1, CPA2, [NAME], CPA5, CREB3L2, CTTNBP2, DENND2A, DGKI, DLD, DNAJB9, DOCK4, DUS4L, EFCAB10, EIF3IP1, EPHA1, EPHB6, EXOC4, FAM131B, FAM180A, [NAME], FAM40B, FAM71F1, FAM71F2, FEZF1, FLJ23834, FLJ36031, FLJ40852, FLJ43663, FLJ45340, FLNC, FOXP2, FSCN3, GCC1, GPR22, GPR37, GPR85, GRM8, [NAME], HBP1, HIPK2, HYAL4, [NAME], IFRD1, IMMP2L, IMPDH1, ING3, IQUB, IRF5, JHDM1D, KCND2, KCP, KEL, KIAA1147, KIAA1549, KLF14, KLHDC10, KLRG2, LAMB1, LAMB4, LEP, [NAME], [NAME], LOC100124692, LOC100134229, LOC100134713, [NAME], LOC286002, LOC286016, [NAME], LOC407835, LOC723809, LOC93432, LRGUK, LRRC4, LRRN3, [NAME], LUC7L2, [NAME], MDFIC, MEST, [NAME], MET, METTL2B, MGAM, MIR129-1, [NAME], MIR183, MIR29A, MIR29B1, MIR335, MIR490, MIR592, MIR593, MIR96, MKLN1, MKRN1, MLL5, [NAME], MRPS33, MTPN, NAMPT, NDUFA5, [NAME], NRCAM, NRF1, NUP205, [NAME], OR6V1, OR6W1P, OR9A2, OR9A4, ORC5L, PARP12, PAX4, [NAME], PIP, PL-5283, [NAME], PNPLA8, PODXL, POT1, [NAME], PRKAR2B, PRRT4, PRSS1, PRSS2, PRSS37, PTN, PTPRZ1, PUS7, RAB19, RBM28, RELN, RINT1, RNF133, RNF148, SLC13A1, SLC13A4, SLC26A3, SLC26A4, SLC26A5, SLC35B4, SLC37A3, SMO, SND1, [NAME], SRPK2, SSBP1, ST7, ST7OT1, ST7OT2, [NAME], ST7OT4, STRA8, SVOPL, SYPL1, TAS2R16, TAS2R3, TAS2R38, TAS2R39, TAS2R4, TAS2R40, TAS2R41, TAS2R5, TAS2R60, TBXAS1, TES, TFEC, THAP5, TMEM139, TMEM140, TMEM168, TMEM209, TMEM213, TMEM229A, TNPO3, TRIM24, TRPV5, TRPV6, TRY6, TRYX3, TSGA13, TSGA14, TSPAN12, TSPAN33, TTC26, UBE2H, [NAME], WASL, WDR91, [NAME], WNT16, WNT2, [NAME], ZC3HAV1L, ZC3HC1, ZNF277, ZNF800, ZYX
664 | chr7:143,209,422-143,512,340 | 7 | 143209422 | 143512340 | High Copy Gain | 302919 | 10 | 127 | q35 | CTAGE4, FAM115A, [NAME], OR2A14, OR2A2, OR2A25, OR2A5, OR2F1, OR2F2, OR6B1
664 | chr7:143,705,374-151,246,409 | 7 | 143705374 | 151246409 | High Copy Gain | 7541036 | 63 | 2430 | q35 - q36.1 | ABCB8, ABCF2, ABP1, ACCN3, ACTR3C, [NAME], ARHGEF5, ASB10, ATG9B, ATP6V0E2, C7orf29, C7orf33, CDK5, CHPF2, CNTNAP2, CRYGN, CUL1, EZH2, FASTK, [NAME], GIMAP1, GIMAP2, GIMAP4, GIMAP5, GIMAP6, [NAME], GIMAP8, [NAME], KRBA1, LOC100128542, LOC401431, LOC728743, LRRC61, MIR548F4, [NAME], NOBOX, [NAME], NUB1, PDIA4, PRKAG2, RARRES2, REPIN1, RHEB, SLC4A2, SMARCD3, SSPO, TMEM176A, TMEM176B, TMUB1, [NAME], WDR86, ZNF212, ZNF282, [NAME], [NAME], [NAME], [NAME], [NAME], ZNF775, ZNF777, [NAME], ZNF786, ZNF862
664 | chr7:151,638,327-157,082,802 | 7 | 151638327 | 157082802 | High Copy Gain | 5444476 | 25 | 1925 | [NAME] | ACTR3B, C7orf13, C7orf4, CNPY1, DNAJB6, [NAME], EN2, FABP5L3, HTR5A, INSIG1, LMBR1, LOC100128822, LOC100132707, [NAME], MIR153-2, MLL3, MNX1, NOM1, PAXIP1, PTPRN2, RBM33, RNF32, SHH, UBE3C, XRCC2
664 | chr7:158,677,705-158,821,424 | 7 | 158677705 | 158821424 | High Copy Gain | 143720 | 0 | 31 | q36.3
664 | chr10:45,001,810-45,362,559 | 10 | 45001810 | 45362559 | High Copy Gain | 360750 | 3 | 61 | q11.21 | ALOX5, MARCH8, [NAME]
664 | chr10:49,696,354-50,306,268 | 10 | 49696354 | 50306268 | High Copy Gain | 609915 | 7 | 283 | q11.22 - q11.23 | C10orf128, C10orf71, C10orf72, DRGX, [NAME], [NAME], [NAME]
693 | chr1:202,697,972-203,432,958 | 1 | 202697972 | 203432958 | High Copy Gain | 734987 | 8 | 346 | [NAME] | CNTN2, DSTYK, LRRN2, MDM4, NFASC, PIK3C2B, [NAME], TMEM81
693 | chr7:8,767,412-16,350,787 | 7 | 8767412 | 16350787 | High Copy Gain | 7583376 | 13 | 2808 | p21.3 - p21.1 | ARL4A, DGKB, ETV1, ISPD, MEOX2, NDUFA4, PER4, PHF14, SCIN, THSD7A, TMEM106B, TMEM195, VWDE
693 | chr7:54,643,311-55,278,820 | 7 | 54643311 | 55278820 | High Copy Gain | 635510 | 2 | 258 | p11.2 | EGFR, SEC61G
693 | chr7:76,269,788-76,388,423 | 7 | 76269788 | 76388423 | High Copy Gain | 118636 | 0 | 35 | q11.23
693 | chr7:135,711,221-136,707,025 | 7 | 135711221 | 136707025 | High Copy Gain | 995805 | 3 | 289 | q33 | CHRM2, MIR490, PTN
717 | chr5:0-1,396,198 | 5 | 0 | 1396198 | High Copy Gain | 1396199 | 22 | 567 | p15.33 | AHRR, BRD9, C5orf55, CCDC127, CEP72, CLPTM1L, EXOC3, [NAME], LOC25845, LRRC14B, NKD2, [NAME], PLEKHG4B, SDHA, SLC12A7, SLC6A18, SLC6A19, [NAME], TERT, TPPP, TRIP13, [NAME]
717 | chr5:2,725,791-4,248,947 | 5 | 2725791 | 4248947 | High Copy Gain | 1523157 | 3 | 712 | p15.33 | C5orf38, IRX1, IRX2
717 | chr5:7,881,766-8,127,167 | 5 | 7881766 | 8127167 | High Copy Gain | 245402 | 4 | 137 | p15.31 | ADCY2, C5orf49, FASTKD3, MTRR
717 | chr5:9,088,888-18,327,334 | 5 | 9088888 | 18327334 | High Copy Gain | 9238447 | 24 | 1812 | p15.2 - p15.1 | ANKH, ANKRD33B, BASP1, [NAME], CMBL, CTNND2, DAP, DNAH5, FAM105A, FAM105B, FAM134B, FAM173B, FBXL7, [NAME], LOC285696, MARCH11, [NAME], MYO10, [NAME], SEMA5A, SNORD123, TAS2R1, TRIO, ZNF622
717 | chr5:22,253,408-30,285,875 | 5 | 22253408 | 30285875 | High Copy Gain | 8032468 | 4 | 1255 | p14.3 - p13.3 | CDH10, CDH12, CDH9, PRDM9
717 | chr5:37,994,012-38,801,830 | 5 | 37994012 | 38801830 | High Copy Gain | 807819 | 2 | 318 | p13.2 - p13.1 | EGFLAM, LIFR
717 | chr8:38,357,606-38,846,875 | 8 | 38357606 | 38846875 | High Copy Gain | 489270 | 6 | 190 | p12 - p11.23 | C8orf86, FGFR1, [NAME], RNF5P1, [NAME], WHSC1L1
717 | chr10:129,789,748-129,796,968 | 10 | 129789748 | 129796968 | High Copy Gain | 7221 | 1 | 20 | q26.2 | MKI67
717 | chr12:59,744-212,412 | 12 | 59744 | 212412 | High Copy Gain | 152669 | 3 | 86 | p13.33 | IQSEC3, SLC6A12, SLC6A13
717 | chr20:24,285,478-25,110,982 | 20 | 24285478 | 25110982 | High Copy Gain | 825505 | 6 | 184 | p11.21 | ACSS1, C20orf3, CST7, [NAME], TMEM90B, VSX1
717 | chr20:35,314,567-35,744,334 | 20 | 35314567 | 35744334 | High Copy Gain | 429768 | 5 | 154 | q11.23 | BLCAP, GHRH, MANBAL, NNAT, SRC
717 | chrX:8,210,930-8,356,077 | X | 8210930 | 8356077 | High Copy Gain | 145148 | 0 | 31 | p22.31
717 | chrX:31,783,324-31,787,505 | X | 31783324 | 31787505 | High Copy Gain | 4182 | 1 | 2 | p21.1 | DMD
717 | chrX:54,838,853-54,872,691 | X | 54838853 | 54872691 | High Copy Gain | 33839 | 3 | 2 | p11.21 | ITIH5L, MAGED2, SNORA11
717 | chrX:68,139,296-68,146,023 | X | 68139296 | 68146023 | High Copy Gain | 6728 | 0 | 2 | q13.1
717 | chrX:123,956,860-123,975,023 | X | 123956860 | 123975023 | High Copy Gain | 18164 | 0 | 2 | q25
753 | chr7:51,611,493-52,590,574 | 7 | 51611493 | 52590574 | High Copy Gain | 979082 | 0 | 225 | p12.1
753 | chr7:54,841,138-55,666,940 | 7 | 54841138 | 55666940 | High Copy Gain | 825803 | 3 | 201 | p11.2 | EGFR, LANCL2, VOPP1
839 | chr2:15,744,314-16,314,696 | 2 | 15744314 | 16314696 | High Copy Gain | 570383 | 2 | 144 | p24.3 | MYCN, MYCNOS
839 | chr2:50,443,033-50,774,516 | 2 | 50443033 | 50774516 | High Copy Gain | 331484 | 1 | 103 | p16.3 | NRXN1
839 | chr2:168,856,231-169,092,211 | 2 | 168856231 | 169092211 | High Copy Gain | 235981 | 1 | 73 | q24.3 | [NAME]
839 | chr6:117,653,395-117,767,729 | 6 | 117653395 | 117767729 | High Copy Gain | 114335 | 2 | 33 | [NAME] | ROS1, VGLL2
839 | chr11:78,942,987-79,190,324 | 11 | 78942987 | 79190324 | High Copy Gain | 247338 | 0 | 57 | q14.1
839 | chr11:89,978,353-90,855,612 | 11 | 89978353 | 90855612 | High Copy Gain | 877260 | 0 | 169 | [NAME]
839 | chr11:96,376,243-96,516,152 | 11 | 96376243 | 96516152 | High Copy Gain | 139910 | 0 | 40 | [NAME]
839 | chr11:98,407,914-98,933,732 | 11 | 98407914 | 98933732 | High Copy Gain | 525819 | 1 | 206 | q22.1 | CNTN5
860 | chr7:54,787,150-55,613,023 | 7 | 54787150 | 55613023 | High Copy Gain | 825874 | 4 | 191 | p11.2 | EGFR, [NAME], SEC61G, VOPP1
882 | chr7:54,897,904-55,455,008 | 7 | 54897904 | 55455008 | High Copy Gain | 557105 | 2 | 144 | p11.2 | EGFR, [NAME]
892 | chr7:54,761,370-55,344,581 | 7 | 54761370 | 55344581 | High Copy Gain | 583212 | 2 | 149 | p11.2 | EGFR, SEC61G
930 | chr1:71,530,785-71,619,832 | 1 | 71530785 | 71619832 | High Copy Gain | 89048 | 0 | 21 | p31.1
930 | chr1:198,933,507-200,024,633 | 1 | 198933507 | 200024633 | High Copy Gain | 1091127 | 15 | 321 | [NAME] | C1orf106, CACNA1S, [NAME], CSRP1, GPR25, IGFN1, KIF21B, LAD1, NAV1, PHLDA3, PKP1, RPS10P7, TMEM9, TNNI1, TNNT2
930 | chr2:13,197,898-17,372,137 | 2 | 13197898 | 17372137 | High Copy Gain | 4174240 | 6 | 801 | p24.3 - p24.2 | DDX1, FAM49A, FAM84A, MYCN, MYCNOS, NBAS
930 | chr3:153,342,773-153,465,489 | 3 | 153342773 | 153465489 | High Copy Gain | 122717 | 1 | 37 | q25.1 | LOC401093
930 | chr3:160,665,176-161,478,697 | 3 | 160665176 | 161478697 | High Copy Gain | 813522 | 4 | 257 | q25.33 - q26.1 | IFT80, IL12A, LOC401097, SCHIP1
930 | chr3:193,599,619-193,724,938 | 3 | 193599619 | 193724938 | High Copy Gain | 125320 | 1 | 56 | q28 | FGF12
930 | chr4:54,173,656-54,568,963 | 4 | 54173656 | 54568963 | High Copy Gain | 395308 | 1 | 143 | q12 | RPL21P44
930 | chr4:95,369,889-97,272,734 | 4 | 95369889 | 97272734 | High Copy Gain | 1902846 | 6 | 455 | q22.2 - q22.3 | BMPR1B, HPGDS, PDHA2, PDLIM5, SMARCAD1, UNC5C
930 | chr5:44,562,442-45,045,928 | 5 | 44562442 | 45045928 | High Copy Gain | 483487 | 1 | 64 | p12 | MRPS30
930 | chr5:79,520,161-79,529,415 | 5 | 79520161 | 79529415 | High Copy Gain | 9255 | 1 | 2 | q14.1 | SERINC5
930 | chr6:18,426,455-20,955,698 | 6 | 18426455 | 20955698 | High Copy Gain | 2529244 | 6 | 930 | p22.3 | CDKAL1, E2F3, [NAME], [NAME], MIR548A1, RNF144B
930 | [NAME] | 6 | 83970420 | 84329291 | High Copy Gain | 358872 | 3 | 58 | q14.2 | ME1, PRSS35, SNAP91
930 | chr7:0-3,815,079 | 7 | 0 | 3815079 | High Copy Gain | 3815080 | 37 | 616 | p22.3 - p22.2 | ADAP1, AMZ1, C7orf20, C7orf27, C7orf50, CARD11, CHST12, COX19, CYP2W1, EIF3B, ELFN1, FAM20C, FTSJ2, GNA12, GPER, GPR146, HEATR2, INTS1, IQCE, KIAA1908, LFNG, MAD1L1, [NAME], MICALL2, MIR339, NUDT1, PDGFA, PRKAR1B, PSMG3, [NAME], SNX8, [NAME], TMEM184A, TTYH3, UNC84A, UNCX, ZFAND2A
930 | chr7:3,830,964-57,890,326 | 7 | 3830964 | 57890326 | High Copy Gain | 54059363 | 291 | 7571 | [NAME] | AAA1, ABCA13, ABCB5, ACTB, [NAME], ADCYAP1R1, AEBP1, AGR2, AGR3, AHR, AIMP2, AMPH, ANKMY2, ANLN, AOAH, AQP1, ARL4A, AVL9, BBS9, BLVRA, BMPER, BZW2, C1GALT1, C7orf10, C7orf11, C7orf16, C7orf25, C7orf26, C7orf28A, C7orf28B, C7orf30, C7orf31, C7orf36, C7orf40, C7orf41, C7orf44, C7orf46, C7orf57, C7orf65, C7orf69, C7orf70, C7orf71, C7orf72, CAMK2B, CBX3, CCDC126, CCDC129, CCM2, CCT6A, [NAME], [NAME], [NAME], CHCHD2, CHN2, CLK2P, COBL, COL28A1, [NAME], [NAME], CRHR2, CYCS, CYTH3, DAGLB, DBNL, DDC, DDX56, DFNA5, DGKB, DKFZP586I1420, [NAME], DNAH11, DPY19L1, [NAME], EEPD1, EGFR, EIF2AK1, [NAME], EPDR1, ETV1, EVX1, FAM126A, FAM183B, FAM188B, FBXL18, FERD3L, [NAME], FKBP14, [NAME], FKBP9L, [NAME], [NAME], FSCN1, GARS, GBAS, GCK, GGCT, GHRHR, [NAME], [NAME], GPNMB, GPR141, GRB10, GRID2IP, H2AFV, HDAC9, [NAME], HERPUD2, HIBADH, HNRNPA2B1, HOXA1, HOXA10, HOXA11, HOXA11AS, HOXA13, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, HPVC1, HUS1, [NAME], IGF2BP3, IGFBP1, IGFBP3, IKZF1, IL6, INHBA, INMT, ISPD, ITGB8, JAZF1, KBTBD2, [NAME], KIAA0087, KIAA0415, KIAA0895, KLHL7, LANCL2, LOC285954, LOC349114, LOC389458, LOC389493, LOC402644, LOC441204, LOC441208, LOC442308, [NAME], LOC646762, LOC646999, LOC650226, LSM5, MACC1, MEOX2, MGC87042, MIOS, MIR1200, MIR148A, MIR196B, MIR550-1, MIR550-2, MIR589, MMD2, MPP6, MRPL32, MRPS17, MRPS24, MYL7, MYO1G, NACAD, NDUFA4, NEUROD6, NFE2L3, NOD1, NPC1L1, [NAME], NPVF, NPY, NT5C3, NUDCD3, NUPL2, NXPH1, OCM, OGDH, OSBPL3, PAPOLB, [NAME], PER4, [NAME], PHF14, PHKG1, PKD1L1, PLEKHA8, PMS2, PMS2CL, POLD2, POLM, POLR2J4, POM121L12, POU6F2, PPIA, [NAME], PRR15, PSMA2, PSPH, PURB, RAC1, RADIL, RALA, RAMP3, RAPGEF5, RASA4P, RBAK, [NAME], RNF216L, RP9, RP9P, [NAME], RPL23P8, RPS2P32, RSPH10B, RSPH10B2, SCIN, [NAME], [NAME], SEC61G, SEPT13, SEPT14, SEPT7, SFRP4, SKAP2, SLC29A4, SNORA15, SNORA5A, SNORA5B, SNORA5C, SNORA9, SNORD93, [NAME], SNX13, SOSTDC1, SP4, SP8, [NAME], STARD3NL, STK17A, [NAME], SUMF2, SUNC1, TARP, TAX1BP1, TBRG4, TBX20, THSD7A, TMED4, TMEM106B, TMEM195, TMEM196, TNRC18, TNS3, TOMM7, TRA2A, TRIL, [NAME], TWIST1, TWISTNB, TXNDC3, UBE2D4, UPP1, URGCP, USP42, VOPP1, VPS41, VSTM2A, VWC2, VWDE, WIPF3, WIPI2, YKT6, [NAME], ZMIZ2, ZNF12, ZNF479, ZNF713, ZNF716, ZNF815, ZNF853, ZNRF2, ZPBP
930 | chr7:61,075,979-92,445,240 | 7 | 61075979 | 92445240 | High Copy Gain | 31369262 | 168 | 3737 | [NAME] | ABCB1, ABCB4, ABHD11, ADAM22, AKAP9, ANKIB1, ASL, AUTS2, BAZ1B, [NAME], C7orf23, C7orf42, C7orf63, C7orf64, CACNA2D1, CALN1, CCDC146, CCL24, CCL26, CCT6P1, CD36, CDK14, [NAME], CLDN12, CLDN3, CLDN4, CLIP2, CRCP, CROT, CYP51A1, DBF4, [NAME], [NAME], DPY19L2P4, DTX2, EIF4H, ELN, FAM133B, FDPSL2A, FGL2, FKBP6, FZD1, FZD9, GATAD1, GATSL1, GATSL2, [NAME], GNAT3, GRM3, GTF2I, GTF2IP1, GTF2IRD1, GTF2IRD2, GTF2IRD2B, GTF2IRD2P, GTPBP10, GUSB, HGF, HIP1, [NAME], INTS4L1, INTS4L2, KCTD7, KIAA1324L, KRIT1, LAT2, [NAME], LOC100093631, LOC100132832, LOC100133091, LOC100287704, LOC168474, LOC401387, LOC493754, LOC541473, LOC643955, LOC649395, LOC728927, LOC729156, MAGI2, MDH2, MGC16142, MGC26647, [NAME], MLXIPL, MTERF, NCF1, NCF1B, NCF1C, NCRNA00174, NSUN5, NSUN5B, NSUN5C, PCLO, [NAME], PHTF2, PION, PMS2L11, PMS2L2, [NAME], PMS2L4, PMS2L5, POM121, POM121C, [NAME], POR, PTPN12, RABGEF1, RFC2, [NAME], RPL13AP17, RSBN1L, RUNDC3B, SBDS, SBDSP, SEMA3A, SEMA3C, [NAME], [NAME], SLC25A40, SNORA14A, SNORA22, SPDYE5, SPDYE7P, SPDYE8P, SRCRB4D, SRI, [NAME], STAG3L1, STAG3L2, STAG3L3, STAG3L4, STEAP1, [NAME], STEAP4, [NAME], STYXL1, TBL2, TMEM120A, TMEM60, TP53TG1, TPST1, TRIM50, TRIM73, TRIM74, [NAME], TYW1B, UPK3B, VKORC1L1, VPS37D, WBSCR16, WBSCR17, WBSCR22, WBSCR26, WBSCR27, WBSCR28, YWHAG, ZNF107, [NAME], [NAME], [NAME], ZNF679, ZNF680, ZNF727, ZNF735, ZNF804B, ZNF92, [NAME]
930 | chr7:107,752,516-110,745,823 | 7 | 107752516 | 110745823 | High Copy Gain | 2993308 | 8 | 490 | q31.1 | C7orf66, DNAJB9, EIF3IP1, IMMP2L, LRRN3, NRCAM, PNPLA8, THAP5
930 | chr7:110,972,387-114,139,730 | 7 | 110972387 | 114139730 | High Copy Gain | 3167344 | 11 | 923 | q31.1 | C7orf53, C7orf60, DOCK4, FOXP2, GPR85, IFRD1, IMMP2L, [NAME], [NAME], TMEM168, ZNF277
930 | chr7:116,092,177-116,231,919 | 7 | 116092177 | 116231919 | High Copy Gain | 139743 | 1 | 27 | q31.2 | MET
930 | chr7:116,505,094-117,122,435 | 7 | 116505094 | 117122435 | High Copy Gain | 617342 | 6 | 97 | q31.2 | ASZ1, CFTR, ST7, ST7OT2, [NAME], WNT2
930 | chr7:121,211,398-121,335,783 | 7 | 121211398 | 121335783 | High Copy Gain | 124386 | 1 | 28 | q31.32 | PTPRZ1
930 | chr8:47,212,115-47,294,906 | 8 | 47212115 | 47294906 | High Copy Gain | 82792 | 0 | 15 | [NAME]
930 | chr8:87,634,924-87,636,365 | 8 | 87634924 | 87636365 | High Copy Gain | 1442 | 1 | 2 | q21.3 | CPNE3
930 | chr9:138,732,175-138,738,894 | 9 | 138732175 | 138738894 | High Copy Gain | 6720 | 2 | 2 | q34.3 | FAM69B, SNHG7
930 | chr10:23,479,815-23,615,953 | 10 | 23479815 | 23615953 | High Copy Gain | 136139 | 1 | 33 | p12.2 | PTF1A
930 | chr12:31,258,730-31,298,976 | 12 | 31258730 | 31298976 | High Copy Gain | 40247 | 0 | 28 | p11.21
930 | chr12:67,986,827-67,991,835 | 12 | 67986827 | 67991835 | High Copy Gain | 5009 | 0 | 2 | q15
930 | chr16:34,227,800-35,081,481 | 16 | 34227800 | 35081481 | High Copy Gain | 853682 | 3 | 159 | p11.2 - p11.1 | [NAME], [NAME], UBE2MP1
930 | chr16:66,244,625-66,261,923 | 16 | 66244625 | 66261923 | High Copy Gain | 17299 | 5 | 2 | q22.1 | ACD, C16orf48, C16orf86, PARD6A, RLTPR
930 | chr17:73,278,510-73,284,053 | 17 | 73278510 | 73284053 | High Copy Gain | 5544 | 0 | 2 | q25.3
930 | chr18:51,836,991-52,076,440 | 18 | 51836991 | 52076440 | High Copy Gain | 239450 | 0 | 130 | q21.2 - q21.31
930 | chr20:4,165,407-4,172,041 | 20 | 4165407 | 4172041 | High Copy Gain | 6635 | 1 | 2 | p13 | ADRA1D
930 | chr20:9,494,921-9,502,953 | 20 | 9494921 | 9502953 | High Copy Gain | 8033 | 1 | 2 | p12.2 | PAK7
930 | chr20:10,632,046-10,640,885 | 20 | 10632046 | 10640885 | High Copy Gain | 8840 | 0 | 2 | p12.2
930 | chrX:41,673,582-41,699,431 | X | 41673582 | 41699431 | High Copy Gain | 25850 | 0 | 2 | p11.4
930 | chrX:116,119,067-116,136,501 | X | 116119067 | 116136501 | High Copy Gain | 17435 | 0 | 2 | q23
1011 | chr7:54,713,030-55,998,112 | 7 | 54713030 | 55998112 | High Copy Gain | 1285083 | 9 | 286 | p11.2 | EGFR, FKBP9L, LANCL2, LOC442308, MRPS17, SEC61G, SEPT14, VOPP1, ZNF713
1100 | chr4:176,155,024-176,434,737 | 4 | 176155024 | 176434737 | High Copy Gain | 279714 | 0 | 49 | q34.1
1100 | chr8:129,532,562-130,018,545 | 8 | 129532562 | 130018545 | High Copy Gain | 485984 | 0 | 100 | q24.21
1100 | chr12:60,580,772-60,779,273 | 12 | 60580772 | 60779273 | High Copy Gain | 198502 | 1 | 70 | q14.1 | FAM19A2
1100 | chr12:127,319,139-127,376,815 | 12 | 127319139 | 127376815 | High Copy Gain | 57677 | 1 | 30 | q24.32 | TMEM132C
1109 | chr1:201,977,638-203,034,768 | 1 | 201977638 | 203034768 | High Copy Gain | 1057131 | 16 | 270 | [NAME] | ATP2B4, [NAME], ETNK2, GOLT1A, KISS1, LAX1, [NAME], LRRN2, MDM4, PIK3C2B, PLEKHA6, PPP1R15B, REN, SNRPE, SOX13, ZC3H11A
1109 | chr7:54,284,908-55,362,335 | 7 | 54284908 | 55362335 | High Copy Gain | 1077428 | 3 | 240 | p11.2 | EGFR, SEC61G, VSTM2A
1178 | chr7:54,841,138-55,362,335 | 7 | 54841138 | 55362335 | High Copy Gain | 521198 | 1 | 139 | p11.2 | EGFR
1184 | chr12:56,329,591-56,813,934 | 12 | 56329591 | 56813934 | High Copy Gain | 484344 | 14 | 65 | q14.1 | AGAP2, AVIL, CDK4, [NAME], CYP27B1, FAM119B, LOC100130776, [NAME], [NAME], MIR26A2, OS9, TSFM, TSPAN31, XRCC6BP1
1184 | [NAME] | 12 | 67178744 | 67541065 | High Copy Gain | 362322 | 5 | 55 | q15 | CPM, MDM2, NUP107, RAP1B, SLC35E3
1208 | chr7:52,457,291-56,740,715 | 7 | 52457291 | 56740715 | High Copy Gain | 4283425 | 22 | 931 | p12.1 - p11.2 | CCT6A, CHCHD2, [NAME], [NAME], FKBP9L, GBAS, HPVC1, LANCL2, LOC389493, LOC442308, LOC650226, MRPS17, PHKG1, POM121L12, PSPH, SEC61G, SEPT14, SNORA15, SUMF2, VOPP1, VSTM2A, ZNF713
1208 | chr7:82,351,745-82,793,106 | 7 | 82351745 | 82793106 | High Copy Gain | 441362 | 1 | 98 | q21.11 | PCLO
1217 | chr7:54,606,493-55,287,693 | 7 | 54606493 | 55287693 | High Copy Gain | 681201 | 2 | 186 | p11.2 | EGFR, SEC61G
1217 | chr12:56,222,741-56,612,598 | 12 | 56222741 | 56612598 | High Copy Gain | 389858 | 20 | 48 | q13.3 - q14.1 | AGAP2, AVIL, B4GALNT1, CDK4, [NAME], CYP27B1, DCTN2, DTX3, FAM119B, GEFT, KIF5A, LOC100130776, [NAME], [NAME], MIR26A2, OS9, PIP4K2C, SLC26A10, TSFM, TSPAN31
1224 | [NAME] | 3 | 170905453 | 189045554 | High Copy Gain | 18140102 | 118 | 3830 | q26.2 - q27.3 | ABCC5, ABCF3, ACTL6A, ADIPOQ, AHSG, ALG3, AP2M1, [NAME], ATP11B, B3GNT5, BCL6, C3orf65, C3orf70, CAMK2N2, CCDC39, CHRD, CLCN2, CLDN11, CRYGS, DCUN1D1, DGKG, DNAJB11, DNAJC19, DVL3, ECE2, ECT2, EHHADH, EIF2B5, EIF4A2, EIF4G1, EIF5A2, EPHB3, ETV5, FAM131A, FETUB, [NAME], FXR1, [NAME], GNB4, GPR160, HRG, HTR3C, HTR3D, HTR3E, IGF2BP2, KCNMB2, KCNMB3, KLHL24, KLHL6, KNG1, LAMP3, LIPH, [NAME], LRRC31, LRRC34, [NAME], MAGEF1, MAP3K13, MAP6D1, MASP1, MCCC1, MCF2L2, MFN1, MIR1224, MIR1248, MIR569, MRPL47, MYNN, NAALADL2, [NAME], NDUFB5, NLGN1, PARL, PEX5L, PHC3, PIK3CA, PLD1, POLR2H, PRKCI, PSMD2, RFC4, RPL22L1, [NAME], RTP1, RTP2, RTP4, SAMD7, SEC62, SENP2, SKIL, SLC2A2, SLC7A14, SNORA4, SNORA63, SNORA81, [NAME], SNORD66, [NAME], SOX2OT, SPATA16, SST, ST6GAL1, TBCCD1, TBL1XR1, TERC, [NAME], TMEM212, TMEM41A, TNFSF10, TNIK, TRA2B, TTC14, USP13, VPS8, VWA5B2, [NAME], [NAME], [NAME]
1224 | chr7:54,616,651-55,344,581 | 7 | 54616651 | 55344581 | High Copy Gain | 727931 | 2 | 193 | p11.2 | EGFR, SEC61G
1228 | chr4:53,414,448-55,396,991 | 4 | 53414448 | 55396991 | High Copy Gain | 1982544 | 9 | 424 | q12 | CHIC2, FIP1L1, GSX2, KIT, [NAME], PDGFRA, RASL11B, RPL21P44, SCFD2
1523 | chr7:54,486,661-55,411,704 | 7 | 54486661 | 55411704 | High Copy Gain | 925044 | 4 | 227 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
1538 | chr7:54,189,184-55,602,070 | 7 | 54189184 | 55602070 | High Copy Gain | 1412887 | 6 | 304 | p11.2 | EGFR, HPVC1, [NAME], SEC61G, VOPP1, VSTM2A
1538 | chr12:56,297,069-56,875,935 | 12 | 56297069 | 56875935 | High Copy Gain | 578867 | 17 | 87 | q13.3 - q14.1 | AGAP2, AVIL, B4GALNT1, CDK4, [NAME], CYP27B1, FAM119B, GEFT, LOC100130776, [NAME], [NAME], MIR26A2, OS9, SLC26A10, TSFM, TSPAN31, XRCC6BP1
1539 | chr7:54,585,696-55,306,072 | 7 | 54585696 | 55306072 | High Copy Gain | 720377 | 3 | 195 | p11.2 | EGFR, SEC61G, VSTM2A
1539 | chr7:61,259,193-62,309,673 | 7 | 61259193 | 62309673 | High Copy Gain | 1050481 | 0 | 100 | q11.21
1539 | chr7:91,701,378-96,459,992 | 7 | 91701378 | 96459992 | High Copy Gain | 4758615 | 34 | 892 | q21.2 - q21.3 | ANKIB1, ASB4, BET1, C7orf64, CALCR, [NAME], CCDC132, [NAME], COL1A2, [NAME], DYNC1I1, FAM133B, GATAD1, GNG11, GNGT1, HEPACAM2, KRIT1, MGC16142, MIR489, MIR591, MIR653, PDK4, PEG10, [NAME], PON1, PON2, PON3, PPP1R9A, SAMD9, SAMD9L, SGCE, SHFM1, SLC25A13, TFPI2
1539 | chr7:137,352,641-137,577,903 | 7 | 137352641 | 137577903 | High Copy Gain | 225263 | 1 | 60 | q34 | AKR1D1
1541 | chr3:181,891,623-183,559,686 | 3 | 181891623 | 183559686 | High Copy Gain | 1668064 | 4 | 224 | q26.33 | [NAME], FXR1, [NAME], SOX2OT
1544 | chr4:31,534,321-32,385,844 | 4 | 31534321 | 32385844 | High Copy Gain | 851524 | 0 | 161 | p15.1
1544 | chr4:40,337,692-40,477,884 | 4 | 40337692 | 40477884 | High Copy Gain | 140193 | 1 | 34 | p14 | NSUN7
1544 | chr4:54,196,760-55,602,047 | 4 | 54196760 | 55602047 | High Copy Gain | 1405288 | 5 | 305 | q12 | CHIC2, GSX2, KIT, PDGFRA, RPL21P44
1558 | chr7:54,606,493-55,310,146 | 7 | 54606493 | 55310146 | High Copy Gain | 703654 | 2 | 193 | p11.2 | EGFR, SEC61G
1559 | chr7:54,670,338-55,299,972 | 7 | 54670338 | 55299972 | High Copy Gain | 629635 | 2 | 173 | p11.2 | EGFR, SEC61G
2224 | chr2:35,933,318-35,939,107 | 2 | 35933318 | 35939107 | High Copy Gain | 5790 | 0 | 2 | p22.3
2224 | chr2:71,160,642-71,165,960 | 2 | 71160642 | 71165960 | High Copy Gain | 5319 | 0 | 2 | p13.3
2224 | chr2:74,815,850-74,820,423 | 2 | 74815850 | 74820423 | High Copy Gain | 4574 | 0 | 2 | p13.1
2224 | chr2:77,947,265-77,950,457 | 2 | 77947265 | 77950457 | High Copy Gain | 3193 | 0 | 2 | p12
2224 | chr2:95,467,712-95,553,803 | 2 | 95467712 | 95553803 | High Copy Gain | 86092 | 1 | 2 | [NAME] | TRIM43B
2224 | chr2:109,308,312-109,317,570 | 2 | 109308312 | 109317570 | High Copy Gain | 9259 | 1 | 2 | q13 | SH3RF3
2224 | chr2:112,092,330-112,094,830 | 2 | 112092330 | 112094830 | High Copy Gain | 2501 | 0 | 2 | q13
2224 | chr2:116,295,809-116,305,250 | 2 | 116295809 | 116305250 | High Copy Gain | 9442 | 1 | 2 | q14.1 | DPP10
2224 | chr2:121,598,302-121,601,756 | 2 | 121598302 | 121601756 | High Copy Gain | 3455 | 0 | 2 | q14.2
2224 | chr2:128,749,548-128,757,651 | 2 | 128749548 | 128757651 | High Copy Gain | 8104 | 1 | 2 | [NAME] | HS6ST1
2224 | chr2:185,026,196-185,035,210 | 2 | 185026196 | 185035210 | High Copy Gain | 9015 | 0 | 2 | [NAME]
2224 | chr5:162,743,524-165,640,141 | 5 | 162743524 | 165640141 | High Copy Gain | 2896618 | 4 | 558 | q34 | CCNG1, HMMR, MAT2B, [NAME]
2224 | chr5:178,639,225-180,857,866 | 5 | 178639225 | 180857866 | High Copy Gain | 2218642 | 41 | 366 | q35.3 | ADAMTS2, [NAME], [NAME], BTNL9, C5orf45, C5orf60, CANX, CBY3, CNOT6, FLT4, GFPT2, GNB2L1, [NAME], LOC100132062, LOC100132287, LOC100133331, LOC729678, LTC4S, MAML1, MAPK9, [NAME], MGAT4B, MIR1229, MIR340, OR2V2, OR2Y1, OR4F16, OR4F29, OR4F3, [NAME], RNF130, RUFY1, SCGB3A1, SNORD95, SNORD96A, SQSTM1, TBC1D9B, TRIM41, TRIM52, TRIM7, ZFP62
2224 | chr6:132,701,199-132,723,260 | 6 | 132701199 | 132723260 | High Copy Gain | 22062 | 1 | 2 | q23.2 | MOXD1
2224 | chr6:162,791,549-162,793,223 | 6 | 162791549 | 162793223 | High Copy Gain | 1675 | 1 | 2 | q26 | PARK2
2224 | chr7:79,268,528-84,991,768 | 7 | 79268528 | 84991768 | High Copy Gain | 5723241 | 10 | 1085 | q21.11 | CACNA2D1, CD36, [NAME], GNAT3, HGF, PCLO, SEMA3A, SEMA3C, [NAME], [NAME]
2224 | [NAME] | 13 | 86297402 | 92707635 | High Copy Gain | 6410234 | 11 | 1033 | q31.1 - q31.3 | [NAME], GPC6, LOC144776, MIR17, MIR17HG, MIR18A, MIR19A, MIR19B1, MIR20A, [NAME], SLITRK5
2224 | chr18:65,099,522-65,107,588 | 18 | 65099522 | 65107588 | High Copy Gain | 8067 | 0 | 2 | [NAME]
2322 | chr8:47,062,007-146,274,826 | 8 | 47062007 | 146274826 | High Copy Gain | 99212820 | 446 | 9375 | [NAME] | [NAME], [NAME], ADCY8, ADHFE1, [NAME], ANKRD46, ANXA13, ARC, ARFGEF1, ARMC1, ASAP1, ASAP1IT1, ASPH, ATAD2, ATP6V0D2, ATP6V1C1, ATP6V1H, AZIN1, BAALC, BAI1, BEYLA, BHLHE22, BOP1, BREA2, C8ORFK29, C8orf22, C8orf30A, C8orf31, C8orf33, C8orf34, C8orf37, C8orf38, C8orf39, C8orf44, C8orf45, C8orf46, C8orf47, C8orf51, C8orf55, C8orf56, C8orf59, C8orf71, C8orf73, C8orf76, C8orf77, C8orf83, C8orf84, C8orf85, CA1, CA13, CA2, CA3, CA8, CALB1, CCNE2, CDH17, CEBPD, CHCHD7, CHD7, CHMP4C, CHRAC1, CLVS1, CNBD1, CNGB3, COL14A1, COL22A1, COLEC10, COMMD5, COPS5, COX6C, CPA6, CPNE3, CPSF1, CRH, [NAME], [NAME], CSPP1, CTHRC1, CYC1, CYHR1, CYP11B1, CYP11B2, CYP7A1, CYP7B1, DCAF13, DCAF4L2, DECR1, DENND3, DEPDC6, DERL1, [NAME], DNAJC5B, DPY19L4, DPYS, [NAME], E2F5, EBAG9, EEF1D, EFCAB1, EFR3A, EIF2C2, [NAME], EIF3H, ENPP2, ENY2, [NAME], ESRP1, EXOSC4, EXT1, [NAME], FABP12, FABP4, FABP5, [NAME], FAM110B, [NAME], FAM150A, FAM164A, FAM49B, FAM82B, FAM83A, FAM83H, FAM84B, FAM91A1, FAM92A1, [NAME], FBXO32, FBXO43, FER1L6, FLJ43860, FOXH1, FZD6, [NAME], GDF6, GEM, GGH, GLI4, GML, GOLSYN, GPAA1, GPIHBP1, GPR172A, GPR20, GPT, GRHL2, GRINA, GSDMC, GSDMD, HAS2, HAS2AS, [NAME], HEY1, HHLA1, HNF4G, HPYR1, HRSP12, HSF1, IL7, IMPA1, IMPAD1, INTS8, [NAME], JRK, [NAME], KCNK9, KCNQ3, KCNS2, KCNV1, KHDRBS3, KIAA0146, KIAA0196, [NAME], KIAA1688, KIAA1875, KIFC2, KLF10, KLHL38, [NAME], LAPTM4B, [NAME], [NAME], [NAME], LOC100192378, LOC157381, LOC286094, LOC401463, LOC643763, LOC727677, LOC731779, LRP12, LRRC14, LRRC24, LRRC6, LRRC67, LRRC69, LRRCC1, LY6D, LY6E, LY6H, LY6K, LY96, LYN, [NAME], LYPD2, [NAME], MAF1, MAFA, MAL2, MAPK15, MATN2, MCM4, MED30, MFSD3, MGC70857, MIR1204, MIR1205, MIR1206, MIR1207, MIR1208, MIR1234, MIR124-2, MIR2052, MIR2053, MIR30B, MIR30D, MIR599, MIR661, [NAME], MIR937, MIR939, MMP16, MOS, MRPL13, MRPL15, MRPS28, MSC, MTBP, MTDH, MTERFD1, MTFR1, MTSS1, MYBL1, MYC, NACAP1, NAPRT1, NBN, NCALD, NCOA2, NCRNA00051, NDRG1, NDUFB9, NECAB1, NFKBIL2, NIPAL2, NKAIN3, NOV, NPBWR1, NRBP2, NSMAF, NSMCE2, NUDCD1, OC90, ODF1, OPLAH, OPRK1, OSGIN2, OSR2, OTUD6B, OXR1, [NAME], PAG1, PARP10, [NAME], PDE7A, [NAME], PENK, PGCP, PHF20L1, PI15, PKHD1L1, PKIA, PLAG1, PLEC1, PLEKHF2, PMP2, POLR2K, POP1, POU5F1B, PPP1R16A, PRDM14, PREX2, PRKDC, PSCA, PSKH2, PTDSS1, PTK2, PTP4A3, PTTG3P, PUF60, PVT1, PXDNL, PXMP3, PYCRL, RAB2A, RAD21, RAD54B, RALYL, RB1CC1, [NAME], RDH10, [NAME], REXO1L1, REXO1L2P, RGS20, RGS22, RHPN1, RIMS2, RIPK2, RNF139, RNF19A, [NAME], RPL30, RPL7, [NAME], RPS20, RRM2B, RRS1, [NAME], RUNX1T1, SAMD12, SBF1P1, [NAME], SCRT1, SCXA, SCXB, SDC2, SDCBP, SDR16C5, SDR16C6, [NAME], SHARPIN, SLA, SLC10A5, SLC25A32, SLC26A7, SLC30A8, SLC39A4, SLC45A4, SLC7A13, SLCO5A1, SLURP1, SNAI2, SNHG6, SNORA72, SNORD54, SNORD87, SNTB1, SNTG1, SNX16, SNX31, SOX17, [NAME], SPATC1, SQLE, ST18, ST3GAL1, STAU2, STK3, STMN2, [NAME], TAF2, TATDN1, TCEA1, TCEB1, TERF1, TG, TGS1, TIGD5, TM7SF4, TMED10P, TMEM55A, TMEM64, TMEM65, TMEM67, TMEM68, TMEM70, TMEM71, TMEM74, TNFRSF11B, TOP1MT, TOX, TP53INP1, TPD52, [NAME], TRAPPC9, TRHR, [NAME], TRIM55, TRMT12, TRPA1, TRPS1, TSNARE1, TSPYL5, TSTA3, TTC35, TTPA, UBE2V2, UBE2W, UBR5, UBXN2B, UQCRB, UTP23, VCPIP1, VPS13B, VPS28, WDR67, [NAME], WISP1, WWP1, XKR4, XKR9, YTHDF3, YWHAZ, ZBTB10, ZC3H3, ZFAND1, ZFAT, ZFATAS, ZFHX4, ZFP41, ZFPM2, ZHX1, [NAME], ZNF16, [NAME], ZNF251, ZNF252, ZNF34, ZNF517, ZNF572, [NAME], ZNF696, ZNF7, ZNF704, ZNF706, ZNF707
2159 CD133+ | chr1:201,914,900-203,876,715 | 1 | 201914900 | 203876715 | High Copy Gain | 1961816 | 31 | 490 | [NAME] | ATP2B4, C1orf157, CDK18, CNTN2, DSTYK, ELK4, ETNK2, GOLT1A, KISS1, KLHDC8A, LAX1, LEMD1, LOC127841, LOC284578, LRRN2, MDM4, MFSD4, [NAME], NFASC, NUAK2, PIK3C2B, PLEKHA6, PPP1R15B, [NAME], REN, SNORA77, SNRPE, SOX13, [NAME], TMEM81, ZC3H11A
2159 CD133+ | chr1:203,885,632-204,070,648 | 1 | 203885632 | 204070648 | High Copy Gain | 185017 | 5 | 35 | [NAME] | NUCKS1, PM20D1, RAB7L1, SLC41A1, SLC45A3
2159 CD133+ | chr7:45,251,258-57,890,326 | 7 | 45251258 | 57890326 | High Copy Gain | 12639069 | 47 | 2229 | p13 - p11.1 | ABCA13, [NAME], C7orf57, C7orf65, C7orf69, C7orf72, CCT6A, CDC14C, CHCHD2, COBL, DDC, [NAME], EGFR, [NAME], FKBP9L, GBAS, GRB10, HPVC1, HUS1, IGFBP1, IGFBP3, IKZF1, LANCL2, LOC389493, LOC442308, LOC642006, LOC650226, MRPS17, PHKG1, PKD1L1, POM121L12, PSPH, SEC61G, SEPT13, SEPT14, SNORA15, SUMF2, SUNC1, TNS3, UPP1, VOPP1, VSTM2A, VWC2, ZNF479, ZNF713, ZNF716, ZPBP
2159 CD133+ | chr8:126,585,014-128,844,324 | 8 | 126585014 | 128844324 | High Copy Gain | 2259311 | 4 | 539 | q24.13 - q24.21 | FAM84B, LOC727677, MYC, POU5F1B
26 CD133- | chr7:49,363,304-49,558,140 | 7 | 49363304 | 49558140 | High Copy Gain | 194837 | 0 | 30 | p12.3
26 CD133- | chr7:51,957,153-53,903,122 | 7 | 51957153 | 53903122 | High Copy Gain | 1945970 | 1 | 453 | p12.1 - p11.2 | POM121L12
26 CD133- | chr7:54,148,898-55,299,972 | 7 | 54148898 | 55299972 | High Copy Gain | 1151075 | 4 | 244 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
26 CD133+ | chr7:49,363,304-49,558,140 | 7 | 49363304 | 49558140 | High Copy Gain | 194837 | 0 | 29 | p12.3
26 CD133+ | chr7:51,957,153-53,903,122 | 7 | 51957153 | 53903122 | High Copy Gain | 1945970 | 1 | 455 | p12.1 - p11.2 | POM121L12
26 CD133+ | chr7:54,150,490-55,306,072 | 7 | 54150490 | 55306072 | High Copy Gain | 1155583 | 4 | 244 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
43 CD133+ | chr9:29,162,465-29,187,745 | 9 | 29162465 | 29187745 | High Copy Gain | 25281 | 0 | 2 | p21.1
43 CD133+ | chr9:30,323,517-30,348,879 | 9 | 30323517 | 30348879 | High Copy Gain | 25363 | 0 | 2 | p21.1
6B47 CD133- | chr1:182,645,763-182,662,338 | 1 | 182645763 | 182662338 | High Copy Gain | 16576 | 1 | 2 | q25.3 | C1orf21
6B47 CD133- | chr1:241,177,598-241,200,348 | 1 | 241177598 | 241200348 | High Copy Gain | 22751 | 0 | 2 | q43
6B47 CD133- | chr1:244,541,446-244,548,062 | 1 | 244541446 | 244548062 | High Copy Gain | 6617 | 1 | 2 | q44 | SMYD3
6B47 CD133- | chr7:54,561,014-55,473,824 | 7 | 54561014 | 55473824 | High Copy Gain | 912811 | 4 | 217 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
6B47 CD133- | chr7:55,730,910-56,279,022 | 7 | 55730910 | 56279022 | High Copy Gain | 548113 | 12 | 47 | p11.2 | CCT6A, CHCHD2, FKBP9L, GBAS, LOC389493, MRPS17, PHKG1, PSPH, SEPT14, SNORA15, SUMF2, ZNF713
6B47 CD133- | chr7:150,727,774-150,926,786 | 7 | 150727774 | 150926786 | High Copy Gain | 199013 | 4 | 55 | [NAME] | CRYGN, PRKAG2, RHEB, WDR86
6B47 CD133- | chr7:158,003,666-158,329,229 | 7 | 158003666 | 158329229 | High Copy Gain | 325564 | 4 | 50 | q36.3 | ESYT2, MIR595, NCAPG2, PTPRN2
6B47 CD133- | chr14:25,246,651-38,040,794 | 14 | 25246651 | 38040794 | High Copy Gain | 12794144 | 45 | 2329 | q12 - q21.1 | AKAP6, AP4S1, ARHGAP5, BAZ1A, BRMS1L, C14orf126, C14orf128, C14orf147, C14orf19, C14orf23, CFL2, CLEC14A, COCH, EAPP, [NAME], FAM177A1, FOXA1, [NAME], G2E3, HEATR5A, HECTD1, INSM2, KIAA0391, LOC100129794, MBIP, MIPOL1, MIR624, NFKBIA, NKX2-1, NKX2-8, NOVA1, NPAS3, NUBPL, PAX9, [NAME], PRKD1, PSMA6, [NAME], SCFD1, SFTA3, SLC25A21, SNX6, SRP54, SSTR1, STRN3
6B47 CD133- | chr14:40,897,677-51,963,598 | 14 | 40897677 | 51963598 | High Copy Gain | 11065922 | 43 | 1886 | q21.1 - q22.1 | ABHD12B, ARF6, [NAME], ATP5S, C14orf104, C14orf106, [NAME], C14orf166, [NAME], C14orf183, C14orf28, CDKL1, FAM179B, FANCM, FKBP3, FRMD6, FSCB, GNG2, KLHDC1, KLHDC2, KLHL28, L2HGDH, LRFN5, MAP4K5, MDGA2, MGAT2, NID2, NIN, POLE2, [NAME], PRPF39, PTGDR, PTGER2, PYGL, RPL10L, RPL36AL, RPS29, [NAME], SDCCAG1, SNORD127, SOS2, TMX1, TRIM9
6B47 CD133- | chr14:98,499,549-98,559,389 | 14 | 98499549 | 98559389 | High Copy Gain | 59841 | 0 | 21 | [NAME]
6B47 CD133+ | chr7:54,561,014-55,473,824 | 7 | 54561014 | 55473824 | High Copy Gain | 912811 | 4 | 216 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
6B47 CD133+ | chr7:55,730,910-56,255,187 | 7 | 55730910 | 56255187 | High Copy Gain | 524278 | 12 | 44 | p11.2 | CCT6A, CHCHD2, FKBP9L, GBAS, LOC389493, MRPS17, PHKG1, PSPH, SEPT14, SNORA15, SUMF2, ZNF713
6B47 CD133+ | chr7:150,727,774-150,926,786 | 7 | 150727774 | 150926786 | High Copy Gain | 199013 | 4 | 55 | [NAME] | CRYGN, PRKAG2, RHEB, WDR86
6B47 CD133+ | chr7:158,003,666-158,329,229 | 7 | 158003666 | 158329229 | High Copy Gain | 325564 | 4 | 51 | q36.3 | ESYT2, MIR595, NCAPG2, PTPRN2
6B47 CD133+ | chr14:25,225,434-38,040,794 | 14 | 25225434 | 38040794 | High Copy Gain | 12815361 | 45 | 2318 | q12 - q21.1 | AKAP6, AP4S1, ARHGAP5, BAZ1A, BRMS1L, C14orf126, C14orf128, C14orf147, C14orf19, C14orf23, CFL2, CLEC14A, COCH, EAPP, [NAME], FAM177A1, FOXA1, [NAME], G2E3, HEATR5A, HECTD1, INSM2, KIAA0391, LOC100129794, MBIP, MIPOL1, MIR624, NFKBIA, NKX2-1, NKX2-8, NOVA1, NPAS3, NUBPL, PAX9, [NAME], PRKD1, PSMA6, [NAME], SCFD1, SFTA3, SLC25A21, SNX6, SRP54, SSTR1, STRN3
6B47 CD133+ | chr14:40,897,677-51,963,598 | 14 | 40897677 | 51963598 | High Copy Gain | 11065922 | 43 | 1893 | q21.1 - q22.1 | ABHD12B, ARF6, [NAME], ATP5S, C14orf104, C14orf106, [NAME], C14orf166, [NAME], C14orf183, C14orf28, CDKL1, FAM179B, FANCM, FKBP3, FRMD6, FSCB, GNG2, KLHDC1, KLHDC2, KLHL28, L2HGDH, LRFN5, MAP4K5, MDGA2, MGAT2, NID2, NIN, POLE2, [NAME], PRPF39, PTGDR, PTGER2, PYGL, RPL10L, RPL36AL, RPS29, [NAME], SDCCAG1, SNORD127, SOS2, TMX1, TRIM9
6B47 CD133+ | chr14:98,554,978-98,559,389 | 14 | 98554978 | 98559389 | High Copy Gain | 4412 | 0 | 2 | [NAME]
6B47 CD133+ | chr14:103,406,733-106,368,585 | 14 | 103406733 | 106368585 | High Copy Gain | 2961853 | 32 | 261 | q32.33 | ADAM6, [NAME], AHNAK2, AKT1, ASPG, [NAME], [NAME], C14orf180, C14orf2, C14orf79, C14orf80, CDCA4, CRIP1, CRIP2, GPR132, INF2, JAG2, KIAA0125, [NAME], [NAME], LOC100133469, MGC23270, MIR203, MTA1, NUDT14, PACS2, PLD4, SIVA1, TDRD9, TMEM121, TMEM179, ZBTB42
Br23X (Ns99x) | chr13:54,182,605-54,196,294 | 13 | 54182605 | 54196294 | High Copy Gain | 13690 | 0 | 2 | q21.1
Br23X (Ns99x) | chr13:62,704,551-94,147,662 | 13 | 62704551 | 94147662 | High Copy Gain | 31443112 | 49 | 6624 | q21.31 - q32.1 | ATXN8OS, BTF3L1, C13orf34, C13orf37, CLN5, COMMD6, DACH1, DCT, DIS3, EDNRB, FBXL3, [NAME], GPC6, GPR180, KCTD12, KLF12, [NAME], KLHL1, LMO7, LOC144776, [NAME], MIR17, MIR17HG, MIR18A, MIR19A, MIR19B1, MIR20A, MIR548A2, MIR548F1, MIR548H4, MIR548I4, [NAME], MYCBP2, NDFIP2, OR7E156P, PCDH9, PIBF1, POU4F1, [NAME], RNF219, SCEL, SLAIN1, SLITRK1, SLITRK5, SLITRK6, SPRY2, TBC1D4, TGDS, UCHL3
Br23X (Ns99x) | chr13:95,188,051-97,562,069 | 13 | 95188051 | 97562069 | High Copy Gain | 2374019 | 7 | 740 | [NAME] | [NAME], HS6ST3, IPO5, [NAME], OXGR1, RAP2A, UGGT2
Br23X (Ns99x) | chr13:99,423,263-99,818,735 | 13 | 99423263 | 99818735 | High Copy Gain | 395473 | 2 | 101 | q32.3 | PCCA, [NAME]
Br23X (Ns99x) | chr13:100,504,666-102,311,948 | 13 | 100504666 | 102311948 | High Copy Gain | 1807283 | 10 | 839 | q33.1 | BIVM, C13orf27, C13orf39, ERCC5, FGF14, ITGBL1, KDELC1, LOC643677, NALCN, TPP2
Br23X (Ns99x) | chr13:102,523,468-108,636,777 | 13 | 102523468 | 108636777 | High Copy Gain | 6113310 | 8 | 2407 | q33.1 - q33.3 | ABHD13, ARGLU1, DAOA, EFNB2, FAM155A, [NAME], MYO16, TNFSF13B
Br23X (Ns99x) | chr13:114,017,628-114,142,980 | 13 | 114017628 | 114142980 | High Copy Gain | 125353 | 3 | 49 | q34 | CDC16, [NAME], [NAME]
Br23X (Ns99x) | chr17:22,200,000-22,305,903 | 17 | 22200000 | 22305903 | High Copy Gain | 105904 | 0 | 2 | [NAME]
Br25X (NT108x) | chr7:54,601,657-55,503,166 | 7 | 54601657 | 55503166 | High Copy Gain | 901510 | 4 | 339 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
Br25X (NT108x) | chr7:61,789,487-62,055,663 | 7 | 61789487 | 62055663 | High Copy Gain | 266177 | 0 | 29 | q11.21
Br26X (NT113x) | chr7:54,221,699-56,113,651 | 7 | 54221699 | 56113651 | High Copy Gain | 1891953 | 16 | 659 | p11.2 | CCT6A, EGFR, FKBP9L, GBAS, HPVC1, [NAME], LOC442308, MRPS17, PSPH, SEC61G, SEPT14, SNORA15, SUMF2, VOPP1, VSTM2A, ZNF713
Br26X (NT113x) | chrX:25,771,500-25,859,840 | X | 25771500 | 25859840 | High Copy Gain | 88341 | 0 | 23 | p21.3
Br27P (NT190) | chr12:43,327,772-43,861,984 | 12 | 43327772 | 43861984 | High Copy Gain | 534213 | 4 | 152 | q12 | [NAME], NELL2, [NAME], RACGAP1P
Br27P (NT190) | chr12:56,310,128-56,738,379 | 12 | 56310128 | 56738379 | High Copy Gain | 428252 | 15 | 183 | q14.1 | AGAP2, AVIL, B4GALNT1, CDK4, [NAME], CYP27B1, FAM119B, LOC100130776, [NAME], [NAME], MIR26A2, OS9, TSFM, TSPAN31, XRCC6BP1
Br27P (NT190) | chr12:64,705,848-64,916,861 | 12 | 64705848 | 64916861 | High Copy Gain | 211014 | 3 | 84 | [NAME] | IRAK3, LLPH, TMBIM4
Br27P (NT190) | chr12:123,393,801-123,958,133 | 12 | 123393801 | 123958133 | High Copy Gain | 564333 | 2 | 256 | q24.31 | NCOR2, SCARB1
Br28P (TB1079) | chr7:61,655,261-62,075,370 | 7 | 61655261 | 62075370 | High Copy Gain | 420110 | 0 | 51 | q11.21
Br28P (TB1079) | chr7:81,604,742-81,661,696 | 7 | 81604742 | 81661696 | High Copy Gain | 56955 | 1 | 33 | q21.11 | CACNA2D1
Br28P (TB1079) | chr11:55,121,998-55,185,644 | 11 | 55121998 | 55185644 | High Copy Gain | 63647 | 3 | 27 | q11 | OR4C11, OR4P4, OR4S2
Br28P (TB1079) | chrX:32,960,035-33,340,542 | X | 32960035 | 33340542 | High Copy Gain | 380508 | 1 | 109 | p21.1 | DMD
Br29P (TB1154) | chr19:24,277,594-24,421,125 | 19 | 24277594 | 24421125 | High Copy Gain | 143532 | 0 | 7 | p12
H1213 | chr2:15,664,630-18,211,604 | 2 | 15664630 | 18211604 | High Copy Gain | 2546975 | 10 | 548 | p24.3 - p24.2 | DDX1, FAM49A, GEN1, KCNS3, MSGN1, MYCN, MYCNOS, RAD51AP2, SMC6, VSNL1
H1213 | chr7:54,461,244-55,416,763 | 7 | 54461244 | 55416763 | High Copy Gain | 955520 | 4 | 217 | p11.2 | EGFR, [NAME], SEC61G, VSTM2A
H1213 | chr7:88,244,197-89,046,663 | 7 | 88244197 | 89046663 | High Copy Gain | 802467 | 2 | 189 | q21.13 | MGC26647, ZNF804B
H1213 | chr13:47,434,642-47,647,891 | 13 | 47434642 | 47647891 | High Copy Gain | 213250 | 3 | 26 | q14.2 | MED4, NUDT15, SUCLA2
H1213 | chr13:112,028,439-112,658,067 | 13 | 112028439 | 112658067 | High Copy Gain | 629629 | 4 | 135 | q34 | ATP11A, C13orf28, C13orf35, TUBGCP3
H1213 | chr13:112,676,589-113,355,504 | 13 | 112676589 | 113355504 | High Copy Gain | 678916 | 13 | 106 | q34 | ADPRHL1, ATP4B, CUL4A, DCUN1D2, [NAME], F7, GRTP1, LAMP1, MCF2L, PCID2, PROZ, TFDP1, TMCO3
H1213 | chr21:37,826,843-37,932,585 | 21 | 37826843 | 37932585 | High Copy Gain | 105743 | 1 | 24 | q22.13 | KCNJ6
H1213 | chr21:38,661,366-38,721,302 | 21 | 38661366 | 38721302 | High Copy Gain | 59937 | 1 | 23 | [NAME] | ERG
H456 | chr1:201,846,309-203,690,822 | 1 | 201846309 | 203690822 | High Copy Gain | 1844514 | 27 | 445 | [NAME] | ATP2B4, [NAME], CNTN2, DSTYK, ETNK2, GOLT1A, KISS1, KLHDC8A, LAX1, LEMD1, LOC127841, LRRN2, MDM4, [NAME], NFASC, NUAK2, PIK3C2B, PLEKHA6, PPP1R15B, [NAME], REN, SNORA77, SNRPE, SOX13, [NAME], TMEM81, ZC3H11A
H456 | chr7:54,537,601-55,064,361 | 7 | 54537601 | 55064361 | High Copy Gain | 526761 | 3 | 96 | p11.2 | EGFR, SEC61G, VSTM2A
H456 | chr7:55,198,713-55,288,057 | 7 | 55198713 | 55288057 | High Copy Gain | 89345 | 1 | 42 | p11.2 | EGFR
H456 | chr8:127,724,352-128,832,689 | 8 | 127724352 | 128832689 | High Copy Gain | 1108338 | 3 | 310 | q24.21 | LOC727677, MYC, POU5F1B
H456 | chrX:131,732,462-133,891,132 | X | 131732462 | 133891132 | High Copy Gain | 2158671 | 25 | 137 | q26.2 - q26.3 | CCDC160, FAM122B, FAM122C, GPC3, [NAME], HPRT1, HS6ST2, MGC16121, MIR106A, MIR18B, MIR19B2, MIR20B, MIR363, [NAME], [NAME], MIR450A2, MIR450B, MIR503, MIR542, MIR92A2, MOSPD1, [NAME], PLAC1, TFDP3, USP26
H475 | chr2:22,470,093-22,484,182 | 2 | 22470093 | 22484182 | High Copy Gain | 14090 | 0 | 2 | p24.1
H475 | chr2:36,775,660-36,779,021 | 2 | 36775660 | 36779021 | High Copy Gain | 3362 | 1 | 2 | [NAME] | VIT
H475 | chr2:66,600,881-66,605,663 | 2 | 66600881 | 66605663 | High Copy Gain | 4783 | 1 | 2 | p14 | [NAME]
H475 | chr2:68,398,338-68,400,808 | 2 | 68398338 | 68400808 | High Copy Gain | 2471 | 1 | 2 | p14 | CNRIP1
H475 | chr2:72,212,712-72,231,465 | 2 | 72212712 | 72231465 | High Copy Gain | 18754 | 1 | 2 | p13.3 | CYP26B1
H475 | chr2:80,041,133-80,041,506 | 2 | 80041133 | 80041506 | High Copy Gain | 374 | 1 | 2 | p12 | CTNNA2
H475 | chr2:80,380,578-80,394,092 | 2 | 80380578 | 80394092 | High Copy Gain | 13515 | 2 | 2 | p12 | CTNNA2, LRRTM1
H475 | chr2:90,970,848-91,538,499 | 2 | 90970848 | 91538499 | High Copy Gain | 567652 | 3 | 0 | p11.2 - p11.1 | FKSG73, [NAME], [NAME]
H475 | chr7:53,502,083-57,890,326 | 7 | 53502083 | 57890326 | High Copy Gain | 4388244 | 24 | 585 | p12.1 - p11.1 | CCT6A, CHCHD2, [NAME], [NAME], FKBP9L, GBAS, HPVC1, LANCL2, LOC389493, LOC442308, LOC642006, LOC650226, MRPS17, PHKG1, PSPH, SEC61G, SEPT14, SNORA15, SUMF2, VOPP1, VSTM2A, ZNF479, ZNF713, ZNF716
H475 | chr7:57,208,228-57,598,605 | 7 | 57208228 | 57598605 | High Copy Gain | 390378 | 3 | 129 | p11.2 - p11.1 | LOC642006, ZNF479, ZNF716
H475 | chr7:61,075,979-75,582,608 | 7 | 61075979 | 75582608 | High Copy Gain | 14506630 | 101 | 1364 | [NAME] | ABHD11, ASL, AUTS2, BAZ1B, [NAME], C7orf42, CALN1, CCL24, CCL26, CCT6P1, CLDN3, CLDN4, CLIP2, CRCP, DNAJC30, EIF4H, ELN, FKBP6, FZD9, GATSL1, GATSL2, GTF2I, GTF2IP1, GTF2IRD1, GTF2IRD2, GTF2IRD2B, GTF2IRD2P, GUSB, HIP1, INTS4L1, INTS4L2, [NAME], LAT2, [NAME], LOC100093631, LOC100287704, LOC168474, LOC493754, LOC541473, LOC643955, LOC649395, LOC728927, LOC729156, MDH2, [NAME], MLXIPL, NCF1, NCF1B, NCF1C, NCRNA00174, NSUN5, NSUN5B, NSUN5C, PMS2L2, [NAME], PMS2L4, PMS2L5, POM121, POM121C, POR, RABGEF1, RFC2, RHBDD2, SBDS, SBDSP, SNORA14A, SNORA22, SPDYE5, SPDYE7P, SPDYE8P, STAG3L1, STAG3L2, STAG3L3, STAG3L4, STX1A, STYXL1, TBL2, TMEM120A, TPST1, TRIM50, TRIM73, TRIM74, [NAME], TYW1B, VKORC1L1, VPS37D, WBSCR16, WBSCR17, WBSCR22, WBSCR26, WBSCR27, WBSCR28, [NAME], [NAME], [NAME], [NAME], ZNF679, ZNF680, ZNF727, ZNF735, ZNF92
H475 | chr7:120,743,839-120,763,390 | 7 | 120743839 | 120763390 | High Copy Gain | 19552 | 1 | 2 | q31.31 | WNT16
H475 | chr7:125,848,487-125,852,523 | 7 | 125848487 | 125852523 | High Copy Gain | 4037 | 0 | 2 | q31.33
H475 | chr7:155,086,208-158,821,424 | 7 | 155086208 | 158821424 | High Copy Gain | 3735217 | 18 | 1383 | q36.3 | C7orf13, C7orf4, DNAJB6, ESYT2, LMBR1, LOC154822, MIR153-2, MIR595, MNX1, [NAME], NOM1, PTPRN2, RBM33, RNF32, SHH, UBE3C, [NAME], WDR60
H475 | chr14:49,249,815-49,272,266 | 14 | 49249815 | 49272266 | High Copy Gain | 22452 | 1 | 2 | q22.1 | KLHDC1
H475 | chr14:67,108,394-67,115,598 | 14 | 67108394 | 67115598 | High Copy Gain | 7205 | 1 | 2 | q24.1 | PLEKHH1
H475 | chrX:6,465,668-6,795,167 | X | 6465668 | 6795167 | High Copy Gain | 329500 | 0 | 86 | p22.31
H493 | chr4:167,887,327-167,894,204 | 4 | 167887327 | 167894204 | High Copy Gain | 6878 | 1 | 2 | q32.3 | SPOCK3
H493 | chr7:0-15,280,054 | 7 | 0 | 15280054 | High Copy Gain | 15280055 | 92 | 3165 | p22.3 - p21.1 | ACTB, ADAP1, AIMP2, AMZ1, ARL4A, C1GALT1, C7orf20, C7orf26, C7orf27, C7orf28A, C7orf28B, C7orf50, C7orf70, CARD11, CHST12, COL28A1, COX19, CYP2W1, CYTH3, DAGLB, DGKB, EIF2AK1, EIF3B, ELFN1, ETV1, FAM20C, FBXL18, [NAME], FSCN1, FTSJ2, GLCCI1, GNA12, GPER, GPR146, GRID2IP, HEATR2, ICA1, INTS1, IQCE, [NAME], KIAA0415, KIAA1908, LFNG, LOC389458, MAD1L1, [NAME], MICALL2, MIOS, MIR339, MIR589, MMD2, NDUFA4, NUDT1, NXPH1, OCM, PAPOLB, PDGFA, PER4, PHF14, PMS2, [NAME], PRKAR1B, PSMG3, RAC1, RADIL, RBAK, [NAME], RNF216L, [NAME], RSPH10B, RSPH10B2, SCIN, SDK1, SLC29A4, SNX8, TFAMP1, THSD7A, TMEM106B, TMEM184A, TMEM195, TNRC18, TTYH3, UNC84A, UNCX, USP42, VWDE, WIPI2, [NAME], ZFAND2A, ZNF12, ZNF815, [NAME]
H493 | chr7:15,504,418-15,506,349 | 7 | 15504418 | 15506349 | High Copy Gain | 1932 | 1 | 2 | p21.1 | TMEM195
H493 | chr7:15,846,574-16,077,910 | 7 | 15846574 | 16077910 | High Copy Gain | 231337 | 0 | 94 | p21.1
H493 | chr7:16,278,551-16,282,602 | 7 | 16278551 | 16282602 | High Copy Gain | 4052 | 1 | 2 | p21.1 | ISPD
H493 | chr7:16,631,398-16,633,769 | 7 | 16631398 | 16633769 | High Copy Gain | 2372 | 1 | 2 | p21.1 | ANKMY2
H493 | [NAME] | 7 | 18832843 | 18854613 | High Copy Gain | 21771 | 1 | 7 | p21.1 | HDAC9
H493 | chr7:21,080,180-21,086,313 | 7 | 21080180 | 21086313 | High Copy Gain | 6134 | 0 | 2 | p15.3
H493 | chr7:23,722,612-23,734,349 | 7 | 23722612 | 23734349 | High Copy Gain | 11738 | 1 | 2 | p15.3 | STK31
H493 | chr7:26,381,075-26,673,164 | 7 | 26381075 | 26673164 | High Copy Gain | 292090 | 3 | 171 | p15.2 | C7orf71, KIAA0087, LOC441204
H493 | chr7:26,773,811-26,846,407 | 7 | 26773811 | 26846407 | High Copy Gain | 72597 | 1 | 5 | p15.2 | SKAP2
H493 | chr7:28,034,029-28,251,643 | 7 | 28034029 | 28251643 | High Copy Gain | 217615 | 1 | 60 | p15.1 | JAZF1
H493 | chr7:29,093,480-29,097,748 | 7 | 29093480 | 29097748 | High Copy Gain | 4269 | 1 | 2 | p15.1 | [NAME]
H493 | chr7:31,861,576-32,482,000 | 7 | 31861576 | 32482000 | High Copy Gain | 620425 | 1 | 289 | [NAME] | [NAME]
H493 | chr7:32,418,531-32,425,818 | 7 | 32418531 | 32425818 | High Copy Gain | 7288 | 0 | 4 | [NAME]
H493 | chr7:37,632,386-37,651,357 | 7 | 37632386 | 37651357 | High Copy Gain | 18972 | 0 | 2 | p14.1
H493 | chr7:39,453,944-39,467,272 | 7 | 39453944 | 39467272 | High Copy Gain | 13329 | 1 | 2 | p14.1 | POU6F2
H493 | chr7:43,270,098-43,283,944 | 7 | 43270098 | 43283944 | High Copy Gain | 13847 | 1 | 2 | p14.1 | [NAME]
H493 | chr7:45,142,362-45,148,741 | 7 | 45142362 | 45148741 | High Copy Gain | 6380 | 0 | 2 | p13
H493 | chr7:45,651,610-45,657,053 | 7 | 45651610 | 45657053 | High Copy Gain | 5444 | 1 | 2 | p13 | [NAME]
H493 | chr7:46,558,738-47,228,097 | 7 | 46558738 | 47228097 | High Copy Gain | 669360 | 0 | 248 | p13 - p12.3
H493 | chr7:47,395,755-47,463,836 | 7 | 47395755 | 47463836 | High Copy Gain | 68082 | 1 | 37 | p12.3 | TNS3
H493 | chr7:48,308,205-49,668,294 | 7 | 48308205 | 49668294 | High Copy Gain | 1360090 | 2 | 408 | p12.3 | ABCA13, [NAME]
H493 | chr7:50,207,319-50,240,389 | 7 | 50207319 | 50240389 | High Copy Gain | 33071 | 0 | 8 | p12.2
H493 | chr7:50,537,232-50,539,450 | 7 | 50537232 | 50539450 | High Copy Gain | 2219 | 1 | 2 | p12.2 | DDC
H493 | chr7:53,629,681-53,635,445 | 7 | 53629681 | 53635445 | High Copy Gain | 5765 | 0 | 2 | p12.1
H493 | chr7:54,386,521-57,006,577 | 7 | 54386521 | 57006577 | High Copy Gain | 2620057 | 20 | 369 | p11.2 | CCT6A, CHCHD2, [NAME], [NAME], FKBP9L, GBAS, LANCL2, LOC389493, LOC442308, LOC650226, MRPS17, PHKG1, PSPH, SEC61G, SEPT14, SNORA15, SUMF2, VOPP1, VSTM2A, ZNF713
H493 | chr7:61,075,979-158,821,424 | 7 | 61075979 | 158821424 | High Copy Gain | 97745446 | 680 | 8569 | [NAME] | AASS, ABCB1, ABCB4, ABCB8, ABCF2, ABHD11, [NAME], ACCN3, ACHE, ACN9, ACTL6B, ACTR3B, ACTR3C, ADAM22, ADCK2, [NAME], AGBL3, AGFG2, AGK, AHCYL2, AKAP9, AKR1B1, AKR1B10, AKR1B15, AKR1D1, ALKBH4, ANKIB1, ANKRD7, AP1S1, AP4M1, ARF5, ARHGEF5, ARHGEF5L, ARMC10, ARPC1A, ARPC1B, ASB10, ASB15, ASB4, ASL, ASNS, ASZ1, [NAME], ATP5J2, ATP6V0A4, ATP6V0E2, ATP6V1F, ATXN7L1, AUTS2, AZGP1, BAIAP2L1, BAZ1B, BCAP29, [NAME], BET1, BHLHA15, BPGM, BRAF, BRI3, BUD31, C7orf13, C7orf23, C7orf29, C7orf33, C7orf34, C7orf38, C7orf4, C7orf42, C7orf43, C7orf45, C7orf47, C7orf49, C7orf51, C7orf52, C7orf53, C7orf54, C7orf55, C7orf58, C7orf59, C7orf60, C7orf61, C7orf63, C7orf64, C7orf66, C7orf68, CACNA2D1, [NAME], CALCR, CALD1, CALN1, [NAME], CAPZA2, [NAME], [NAME], [NAME], CAV2, CBLL1, CCDC132, CCDC136, CCDC146, CCL24, CCL26, CCT6P1, CD36, CDK14, CDK5, [NAME], CFTR, CHCHD3, CHPF2, CHRM2, CLCN1, CLDN12, CLDN15, CLDN3, CLDN4, CLEC2L, CLEC5A, CLIP2, CNOT4, CNPY1, CNPY4, CNTNAP2, COG5, COL1A2, [NAME], COPS6, CPA1, CPA2, [NAME], CPA5, CPSF4, CRCP, CREB3L2, CROT, CRYGN, CTAGE4, CTAGE6, CTTNBP2, CUL1, [NAME], CYP3A4, CYP3A43, CYP3A5, CYP3A7, CYP51A1, DBF4, DENND2A, DGKI, DLD, DLX5, DLX6, DLX6AS, [NAME], [NAME], DNAJB9, DNAJC2, DNAJC30, DOCK4, DPP6, DPY19L2P2, DPY19L2P4, DTX2, DUS4L, DYNC1I1, EFCAB10, EIF3IP1, EIF4H, ELN, EMID2, EN2, EPHA1, EPHB4, EPHB6, EPO, ESYT2, EXOC4, EZH2, FABP5L3, FAM115A, [NAME], FAM131B, FAM133B, FAM180A, [NAME], [NAME], FAM40B, FAM71F1, FAM71F2, FASTK, FBXL13, FBXO24, FDPSL2A, FEZF1, FGL2, FIS1, FKBP6, FLJ23834, FLJ36031, FLJ40852, FLJ43663, FLJ45340, FLNC, FOXP2, FSCN3, FZD1, FZD9, GAL3ST4, GALNT11, GALNTL5, GATAD1, GATS, GATSL1, GATSL2, [NAME], GCC1, [NAME], GIMAP1, GIMAP2, GIMAP4, GIMAP5, GIMAP6, [NAME], GIMAP8, [NAME], [NAME], GNAT3, [NAME], GNG11, GNGT1, GPC2, GPR22, GPR37, GPR85, GRM3, GRM8, [NAME], GTF2I, GTF2IP1, GTF2IRD1, GTF2IRD2, GTF2IRD2B, GTF2IRD2P, GTPBP10, GUSB, HBP1, HEPACAM2, HGF, HIP1, HIPK2, [NAME], HTR5A, HYAL4, [NAME], IFRD1, IMMP2L, IMPDH1, ING3, INSIG1, INTS4L1, INTS4L2, IQUB, IRF5, JHDM1D, KCND2, [NAME], KCP, [NAME], KEL, KIAA1147, [NAME], KIAA1549, KLF14, KLHDC10, KLRG2, [NAME], KRBA1, KRIT1, LAMB1, [NAME], LAT2, LEP, [NAME], [NAME], LMBR1, [NAME], LMTK2, LOC100093631, LOC100124692, LOC100128542, LOC100128822, LOC100132707, LOC100132832, LOC100133091, LOC100134229, LOC100134713, LOC100216545, LOC100287704, LOC154761, LOC154822, LOC168474, [NAME], LOC286002, LOC286016, LOC401387, [NAME], LOC401431, LOC407835, LOC441294, LOC493754, LOC541473, LOC643955, LOC649395, LOC723809, LOC728743, [NAME], LOC729156, LOC93432, LRCH4, LRGUK, LRRC17, LRRC4, LRRC61, LRRN3, LRWD1, [NAME], LUC7L2, LUZP6, MAGI2, MBLAC1, MCM7, MDFIC, MDH2, MEPCE, MEST, [NAME], MET, METTL2B, MGAM, MGC16142, MGC26647, [NAME], MIR106B, [NAME]-1, MIR153-2, [NAME], MIR183, MIR25, MIR29A, MIR29B1, MIR335, MIR489, MIR490, MIR548F4, [NAME], MIR591, MIR592, MIR593, MIR595, MIR653, MIR671, MIR93, MIR96, MKLN1, MKRN1, MLL3, MLL5, MLXIPL, [NAME], MOGAT3, MOSPD3, MOXD2, MRPS33, MTERF, MTPN, MUC12, MUC17, MYH16, MYL10, NAMPT, NAPEPLD, [NAME], NCF1, NCF1B, NCF1C, NCRNA00174, [NAME], [NAME], NOBOX, NOM1, [NAME], NPTX2, NRCAM, NRF1, NSUN5, NSUN5B, NSUN5C, NUB1, NUP205, OCM2, [NAME], OR2A1, [NAME], OR2A14, OR2A2, OR2A20P, OR2A25, OR2A42, OR2A5, OR2A7, OR2A9P, OR2AE1, OR2F1, OR2F2, OR6B1, OR6V1, OR6W1P, OR9A2, OR9A4, ORAI2, ORC5L, PARP12, PAX4, PAXIP1, PCLO, PCOLCE, PDAP1, PDIA4, PDK4, PEG10, [NAME], PHTF2, PIK3CG, PILRA, PILRB, PION, PIP, PL-5283, PLOD3, PLXNA4, PMPCB, PMS2L1, PMS2L11, PMS2L2, [NAME], PMS2L4, PMS2L5, PNPLA8, PODXL, POLR2J, POLR2J2, POLR2J3, POM121, POM121C, [NAME], PON1, PON2, PON3, POP7, POR, POT1, PPP1R3A, [NAME], PRKAG2, PRKAR2B, PRKRIP1, PRRT4, PRSS1, PRSS2, PRSS37, PSMC2, PTCD1, PTN, PTPN12, PTPRN2, PTPRZ1, PUS7, PVRIG, RAB19, RABGEF1, RABL5, RARRES2, RASA4, RBM28, RBM33, RELN, REPIN1, RFC2, RHBDD2, RHEB, RINT1, RNF133, RNF148, RNF32, RPL13AP17, RPL19P12, RSBN1L, RUNDC3B, SAMD9, SAMD9L, SBDS, SBDSP, SEMA3A, SEMA3C, [NAME], [NAME], [NAME], SGCE, [NAME], SHFM1, SHH, SLC12A9, SLC13A1, SLC13A4, SLC25A13, SLC25A40, SLC26A3, SLC26A4, SLC26A5, SLC35B4, SLC37A3, SLC4A2, SMARCD3, SMO, SMURF1, SND1, SNORA14A, SNORA22, SPAM1, SPDYE2, [NAME], SPDYE5, SPDYE6, SPDYE7P, SPDYE8P, SRCRB4D, SRI, [NAME], [NAME], SRRT, SSBP1, SSPO, ST7, ST7OT1, ST7OT2, [NAME], ST7OT4, [NAME], STAG3L1, STAG3L2, STAG3L3, STAG3L4, STEAP1, [NAME], [NAME], STRA8, STX1A, STYXL1, SVOPL, SYPL1, TAC1, [NAME], TAS2R16, TAS2R3, TAS2R38, TAS2R39, TAS2R4, TAS2R40, TAS2R41, TAS2R5, TAS2R60, TBL2, TBXAS1, TECPR1, TES, TFEC, TFPI2, TFR2, THAP5, TMEM120A, TMEM130, TMEM139, TMEM140, TMEM168, TMEM176A, TMEM176B, TMEM209, TMEM213, TMEM229A, TMEM60, TMUB1, TNPO3, TP53TG1, [NAME], TPST1, TRIM24, [NAME], TRIM50, TRIM56, TRIM73, TRIM74, TRIP6, TRPV5, TRPV6, TRRAP, TRY6, TRYX3, TSC22D4, TSGA13, TSGA14, TSPAN12, TSPAN33, TTC26, [NAME], TYW1B, UBE2H, UBE3C, UBN2, UFSP1, UPK3B, UPLP, VGF, [NAME], VKORC1L1, VPS37D, WASL, WBSCR16, WBSCR17, WBSCR22, WBSCR26, WBSCR27, WBSCR28, WDR60, WDR86, WDR91, [NAME], WNT16, WNT2, XRCC2, YWHAG, ZAN, [NAME], ZC3HAV1L, ZC3HC1, ZCWPW1, ZKSCAN1, ZKSCAN5, [NAME], [NAME], [NAME], ZNF212, ZNF273, ZNF277, ZNF282, ZNF3, [NAME], [NAME], [NAME], ZNF467, ZNF498, ZNF655, ZNF679, ZNF680, ZNF727, ZNF735, [NAME], [NAME], ZNF775, ZNF777, [NAME], ZNF786, ZNF789, ZNF800, ZNF804B, [NAME], ZNF92, [NAME], ZP3, ZSCAN21, ZYX
H493 | chr9:67,656,950-67,660,241 | 9 | 67656950 | 67660241 | High Copy Gain | 3292 | 0 | 0 | q12
H493 | chr15:21,674,665-21,686,175 | 15 | 21674665 | 21686175 | High Copy Gain | 11511 | 0 | 2 | q11.2
H493 | chr19:4,199,881-4,235,259 | 19 | 4199881 | 4235259 | High Copy Gain | 35379 | 2 | 4 | p13.3 | CCDC94, SHD
H493 | chr19:4,998,900-5,005,853 | 19 | 4998900 | 5005853 | High Copy Gain | 6954 | 1 | 2 | p13.3 | KDM4B
H493 | chr19:15,125,558-15,132,288 | 19 | 15125558 | 15132288 | High Copy Gain | 6731 | 1 | 2 | p13.12 | NOTCH3
H493 | chr19:21,746,276-21,759,456 | 19 | 21746276 | 21759456 | High Copy Gain | 13181 | 0 | 2 | p12
H493 | chr19:40,475,699-40,484,479 | 19 | 40475699 | 40484479 | High Copy Gain | 8781 | 1 | 2 | q13.12 | MAG
H493 | chr19:44,679,178-44,688,589 | 19 | 44679178 | 44688589 | High Copy Gain | 9412 | 1 | 2 | q13.2 | DLL3
H493 | chr19:59,406,091-59,424,179 | 19 | 59406091 | 59424179 | High Copy Gain | 18089 | 1 | 2 | q13.42 | LILRB3
H493 | chr19:59,426,628-59,431,580 | 19 | 59426628 | 59431580 | High Copy Gain | 4953 | 0 | 2 | q13.42
H493 | chr19:59,480,823-59,485,640 | 19 | 59480823 | 59485640 | High Copy Gain | 4818 | 0 | 2 | q13.42
H493 | chr20:0-13,205,128 | 20 | 0 | 13205128 | High Copy Gain | 13205129 | 119 | 4085 | p13 - p12.1 | ADAM33, ADRA1D, ANGPT4, ANKRD5, ATRN, AVP, BMP2, BTBD3, C20orf103, C20orf141, C20orf194, C20orf196, C20orf202, C20orf27, C20orf29, C20orf30, C20orf46, [NAME], [NAME], C20orf96, CDC25B, CDS2, CENPB, CHGB, CPXM1, CRLS1, CSNK2A1, DDRGK1, DEFB125, DEFB126, DEFB127, DEFB128, DEFB129, DEFB132, EBF4, [NAME], [NAME], FASTKD5, FERMT1, FKBP1A, GFRA4, [NAME], HAO1, HSPA12B, [NAME], ISM1, ITPA, JAG1, LOC100288797, LOC149837, LOC643406, [NAME], MAVS, MCM8, MIR103-2, MIR103-2AS, MIR1292, MKKS, MRPS26, NOP56, NRSN2, NSFL1C, OXT, PAK7, PANK2, PCNA, PDYN, PLCB1, PLCB4, PRND, PRNP, PRNT, PROKR2, PSMF1, PTPRA, ProSAPiP1, RAD21L1, RASSF2, [NAME], RNF24, RP5-1022P6.2, [NAME], SCRT2, SDCBP2, SIGLEC1, SIRPA, SIRPB1, SIRPB2, SIRPD, SIRPG, SLC23A2, SLC4A11, [NAME], SNAP25, [NAME], SNORD110, SNORD119, SNORD56, SNORD57, SNORD86, SNPH, SNRPB, SOX12, SPEF1, SPTLC3, SRXN1, STK35, TBC1D20, TCF15, TGM3, TGM6, TMC2, TMX4, TRIB3, TRMT6, UBOX5, VPS16, ZCCHC3, ZNF343
H493 | chr20:14,426,819-25,602,615 | 20 | 14426819 | 25602615 | High Copy Gain | 11175797 | 71 | 3545 | p12.1 - p11.21 | ABHD12, ACSS1, BANF2, [NAME], C20orf12, C20orf26, C20orf3, C20orf56, C20orf72, C20orf79, CD93, CRNKL1, CSRP2BP, CST1, CST11, CST2, CST3, CST4, CST5, CST7, CST8, CST9, CST9L, CSTL1, CSTT, DSTN, [NAME], ENTPD6, FOXA2, GGTLC1, GINS1, GZF1, HSPC072, INSM1, [NAME], LOC100130264, LOC100270804, LOC284788, LOC284798, LOC388789, [NAME], NANP, NAPB, NAT5, NINL, NKX2-2, NKX2-4, NXT1, OTOR, OVOL2, PAX1, PCSK2, PET117, PLK1S1, POLR3F, PYGB, RALGAPA2, RBBP9, RIN2, RRBP1, SEC23B, SLC24A3, SNORD17, SNRPB2, SNX5, SSTR4, THBD, TMEM90B, VSX1, XRN2, [NAME]
H493 | chr20:29,267,954-29,451,700 | 20 | 29267954 | 29451700 | High Copy Gain | 183747 | 4 | 42 | q11.21 | DEFB115, DEFB116, DEFB118, DEFB119
H493 | [NAME] | 20 | 35342591 | 57868249 | High Copy Gain | 22525659 | 202 | 5454 | q11.23 - q13.32 | ACOT8, ACTR5, ADA, ADIG, ADNP, APCDD1L, ARFGEF2, ATP5E, ATP9A, AURKA, B4GALT5, BCAS1, BCAS4, BLCAP, BMP7, BPI, C20orf106, C20orf107, C20orf108, C20orf111, C20orf123, C20orf165, C20orf199, C20orf43, C20orf85, [NAME], CASS4, [NAME], CD40, CDH22, CEBPB, CHD6, CSE1L, CSTF1, CTCFL, [NAME], CTSA, CTSZ, CYP24A1, [NAME], DDX27, DHX35, DNTTIP1, DOK5, [NAME], EDN3, ELMO2, EMILIN3, EYA2, FAM65C, FAM83D, FITM2, GCNT7, GDAP1L1, GNAS, GNASAS, GTSF1L, HMGB1L1, HNF4A, IFT52, [NAME], KCNB1, [NAME], [NAME], [NAME], KIAA0406, KIAA1755, L3MBTL, LBP, LOC100131496, [NAME], LOC284749, LOC339568, LOC388796, [NAME], MAFB, MANBAL, MATN4, MC3R, MIR1259, MIR296, MIR298, MIR645, MMP9, [NAME], MYBL2, NCOA3, NCOA5, NEURL2, NFATC2, NNAT, NPEPL1, PABPC1L, PARD6B, PCIF1, PCK1, PFDN4, PHACTR3, PI3, PIGT, PKIG, PLCG1, PLTP, PMEPA1, PPP1R16B, PPP4R1L, [NAME], PRO0628, PTGIS, PTPN1, PTPRT, R3HDML, RAB22A, RAE1, RALGAPB, RBM38, RBPJL, RIMS4, RNF114, [NAME], [NAME], SDC4, SEMG1, SEMG2, SERINC3, SFRS6, SGK2, SLC12A5, SLC13A3, SLC2A10, SLC32A1, SLC35C2, SLC9A8, [NAME], SLPI, SNAI1, SNHG11, SNORA39, SNORA60, SNORA71A, SNORA71B, SNORA71C, SNORA71D, SNORD12, SNORD12B, SNORD12C, SNX21, SPATA2, SPINLW1, SPINT3, SPINT4, SPO11, SRC, STAU1, STK4, STX16, SULF2, SUMO1P1, SYS1, SYS1-DBNDD2, TFAP2C, TGM2, [NAME], TMEM189, TMEM189-UBE2V1, TNNC2, TOMM34, [NAME], TOX2, TP53RK, TP53TG5, TSHZ2, TTPAL, TUBB1, UBE2C, UBE2V1, VAPB, VSTM2L, WFDC10A, WFDC10B, WFDC11, WFDC12, WFDC13, [NAME], WFDC3, WFDC5, WFDC6, WFDC8, WFDC9, WISP2, [NAME], [NAME], ZFP64, [NAME], ZMYND8, ZNF217, ZNF334, ZNF335, ZNF831, [NAME], ZSWIM1, [NAME]
H493 | chr20:57,945,916-62,435,964 | 20 | 57945916 | 62435964 | High Copy Gain | 4490049 | 85 | 2032 | [NAME] | ADRM1, ARFGAP1, [NAME], BHLHE23, [NAME], C20orf11, C20orf135, C20orf151, C20orf166, C20orf177, C20orf195, C20orf197, C20orf20, C20orf200, C20orf201, CABLES2, CDH26, CDH4, [NAME], COL20A1, COL9A3, DIDO1, DNAJC5, DPH3B, EEF1A2, FLJ16779, GATA5, GMEB2, GTPBP5, HAR1A, HAR1B, [NAME], [NAME], [NAME], LIME1, LOC100127888, LSM14B, MIR1-1, MIR124-3, MIR1257, [NAME], MIR1914, MIR646, MIR647, MIR941-1, MIR941-2, MIR941-3, [NAME], NCRNA00029, NCRNA00176, NKAIN4, NPBWR2, NTSR1, OGFR, OPRL1, OSBPL2, PCMTD2, PPDPF, PPP1R3D, PRIC285, PRPF6, PSMA7, [NAME], RGS19, RPS21, RTEL1, SAMD10, SLC17A9, SLC2A4RG, SLCO4A1, SOX18, SRMS, SS18L1, [NAME], TAF4, TCEA2, TCFL5, TNFRSF6B, TPD52L2, UCKL1, UCKL1AS, YTHDF1, [NAME], ZGPAT, [NAME]
H493 | chr22:17,193,040-17,401,370 | 22 | 17193040 | 17401370 | High Copy Gain | 208331 | 5 | 75 | q11.21 | DGCR10, DGCR5, DGCR6, DGCR9, [NAME]
H527 | chr10:44,188,114-44,191,311 | 10 | 44188114 | 44191311 | High Copy Gain | 3198 | 1 | 2 | q11.21 | CXCL12
H534 | chr7:10,716,750-10,729,381 | 7 | 10716750 | 10729381 | High Copy Gain | 12632 | 0 | 2 | p21.3
H534 | chr7:14,392,750-14,403,126 | 7 | 14392750 | 14403126 | High Copy Gain | 10377 | 1 | 2 | p21.2 | DGKB
H534 | chr7:145,336,373-145,426,289 | 7 | 145336373 | 145426289 | High Copy Gain | 89917 | 0 | 29 | q35
H534 | chr12:56,205,160-57,570,923 | 12 | 56205160 | 57570923 | High Copy Gain | 1365764 | 23 | 204 | q13.3 - q14.1 | AGAP2, AVIL, B4GALNT1, CDK4, [NAME], CYP27B1, DCTN2, DTX3, FAM119B, GEFT, KIF5A, LOC100130776, LRIG3, [NAME], [NAME], [NAME], MIR26A2, OS9, PIP4K2C, SLC26A10, TSFM, TSPAN31, XRCC6BP1
H534 | chr12:61,100,799-61,253,322 | 12 | 61100799 | 61253322 | High Copy Gain | 152524 | 1 | 40 | q14.1 | MON2
H534 | chr12:67,308,492-68,053,622 | 12 | 67308492 | 68053622 | High Copy Gain | 745131 | 9 | 345 | q15 | CPM, CPSF6, LYZ, MDM2, MIR1279, NUP107, RAP1B, SLC35E3, [NAME]
H534 | chr15:59,987,815-60,000,649 | 15 | 59987815 | 60000649 | High Copy Gain | 12835 | 1 | 2 | [NAME] | VPS13C
H534 | chrX:41,650,616-41,689,134 | X | 41650616 | 41689134 | High Copy Gain | 38519 | 1 | 2 | p11.4 | CASK
H542 | chr7:16,453,572-45,738,333 | 7 | 16453572 | 45738333 | High Copy Gain | 29284762 | 188 | 6639 | p21.1 - p13 | AAA1, [NAME], [NAME], ADCYAP1R1, AEBP1, AGR2, AGR3, AHR, AMPH, ANKMY2, ANLN, AOAH, AQP1, AVL9, BBS9, BLVRA, BMPER, BZW2, C7orf10, C7orf11, C7orf16, C7orf25, C7orf30, C7orf31, C7orf36, C7orf40, C7orf41, C7orf44, C7orf46, C7orf71, CAMK2B, CBX3, CCDC126, CCDC129, CCM2, [NAME], [NAME], CHN2, CLK2P, [NAME], [NAME], CRHR2, CYCS, DBNL, DDX56, DFNA5, DKFZP586I1420, DNAH11, DPY19L1, [NAME], EEPD1, [NAME], EPDR1, EVX1, FAM126A, FAM183B, FAM188B, FERD3L, FKBP14, [NAME], FLJ35390, GARS, GCK, GGCT, [NAME], [NAME], GPNMB, GPR141, H2AFV, HDAC9, [NAME], HERPUD2, HIBADH, HNRNPA2B1, HOXA1, HOXA10, HOXA11, HOXA11AS, HOXA13, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, IGF2BP3, IL6, INHBA, INMT, ITGB8, JAZF1, KBTBD2, KIAA0087, KIAA0895, KLHL7, LOC285954, LOC349114, LOC402644, LOC441204, LOC441208, LOC646762, LOC646999, LSM5, MACC1, MGC87042, MIR1200, MIR148A, MIR196B, MIR550-1, MIR550-2, MPP6, MRPL32, MRPS24, MYL7, MYO1G, NACAD, NEUROD6, NFE2L3, NOD1, NPC1L1, [NAME], NPVF, NPY, NT5C3, NUDCD3, NUPL2, OGDH, OSBPL3, [NAME], [NAME], PLEKHA8, POLD2, POLM, POLR2J4, POU6F2, PPIA, [NAME], PRR15, PSMA2, PURB, RALA, RAMP3, RAPGEF5, RASA4P, RP9, RP9P, RPL23P8, RPS2P32, [NAME], SEPT13, SEPT7, SFRP4, SKAP2, SNORA5A, SNORA5B, SNORA5C, SNORA9, SNORD93, [NAME], SNX13, SOSTDC1, SP4, SP8, [NAME], STARD3NL, STK17A, [NAME], TARP, TAX1BP1, TBRG4, TBX20, TMED4, TMEM196, TOMM7, TRA2A, TRIL, [NAME], TWIST1, TWISTNB, TXNDC3, UBE2D4, URGCP, VPS41, WIPF3, YKT6, ZMIZ2, ZNRF2
H542 | chr7:45,919,383-55,706,601 | 7 | 45919383 | 55706601 | High Copy Gain | 9787219 | 27 | 2846 | p13 - p11.2 | ABCA13, C7orf57, C7orf65, C7orf69, C7orf72, [NAME], COBL, DDC, EGFR, [NAME], GRB10, HPVC1, HUS1, IGFBP3, IKZF1, LANCL2, LOC442308, PKD1L1, POM121L12, SEC61G, SUNC1, TNS3, UPP1, VOPP1, VSTM2A, VWC2, ZPBP
H542 | chr7:55,965,426-56,747,329 | 7 | 55965426 | 56747329 | High Copy Gain | 781904 | 12 | 220 | p11.2 | CCT6A, CHCHD2, [NAME], GBAS, LOC389493, LOC650226, MRPS17, PHKG1, PSPH, SNORA15, SUMF2, ZNF713
H542 | chr7:125,674,428-127,879,352 | 7 | 125674428 | 127879352 | High Copy Gain | 2204925 | 16 | 830 | q31.33 - q32.1 | ARF5, C7orf54, FSCN3, GCC1, GRM8, IMPDH1, LEP, LRRC4, MIR129-1, MIR592, MIR593, PAX4, PRRT4, RBM28, [NAME], ZNF800
H542 | chr7:128,085,440-136,661,592 | 7 | 128085440 | 136661592 | High Copy Gain | 8576153 | 67 | 2602 | q32.1 - q33 | AGBL3, AHCYL2, AKR1B1, AKR1B10, AKR1B15, ATP6V1F, BPGM, C7orf45, C7orf49, CALD1, [NAME], CCDC136, CHCHD3, CHRM2, CNOT4, COPG2, CPA1, CPA2, [NAME], CPA5, EXOC4, FAM180A, FAM40B, FAM71F1, FAM71F2, FLJ43663, FLJ45340, FLNC, IRF5, KCP, KLF14, KLHDC10, [NAME], LOC407835, LRGUK, LUZP6, MEST, MESTIT1, [NAME], MIR183, MIR29A, MIR29B1, MIR335, MIR490, MIR96, MKLN1, MTPN, NRF1, NUP205, [NAME], PL-5283, PLXNA4, PODXL, PTN, SLC13A4, SLC35B4, SMO, STRA8, TMEM140, TMEM209, TNPO3, TSGA13, TSGA14, TSPAN33, UBE2H, WDR91, ZC3HC1
H542 | chr8:3,673,832-5,939,662 | 8 | 3673832 | 5939662 | High Copy Gain | 2265831 | 1 | 1769 | p23.2 | CSMD1
H542 | chr10:44,188,114-44,191,311 | 10 | 44188114 | 44191311 | High Copy Gain | 3198 | 1 | 2 | q11.21 | CXCL12
H542 | chr18:54,941,599-55,038,507 | 18 | 54941599 | 55038507 | High Copy Gain | 96909 | 2 | 59 | q21.32 | GRP, SEC11C
H542 | chrX:2,709,234-28,000,632 | X | 2709234 | 28000632 | High Copy Gain | 25291399 | 121 | 5270 | p22.33 - p21.3 | ACE2, ACOT9, AMELX, AP1S2, APOO, ARHGAP6, ARSD, ARSE, ARSF, ARSH, ARX, ASB11, ASB9, ATXN3L, BEND2, BMX, CA5B, CA5BP, CDKL5, CLCN4, CNKSR2, CTPS2, CXorf15, CXorf23, CXorf58, DCAF8L1, DCAF8L2, [NAME], EGFL6, EIF1AX, EIF2S3, FAM48B1, FAM48B2, FAM9A, FAM9B, FAM9C, FANCB, FIGF, FRMPD4, GEMIN8, GLRA2, GPM6B, GPR143, GPR64, GRPR, GYG2, HCCS, HDHD1A, INE2, KAL1, KLHL15, [NAME], [NAME], LOC349408, LOC729609, MAGEB10, MAGEB18, MAGEB6, MAP3K15, MAP7D2, [NAME], [NAME], MIR651, MOSPD2, MSL3, MXRA5, NHS, NLGN4X, OFD1, PCYT1B, [NAME], [NAME], PHEX, PHKA2, PIGA, PIR, PNPLA4, [NAME], PPEF1, PRDX4, PRKX, PRPS2, PTCHD1, RAB9A, RAI2, [NAME], [NAME], RPS6KA3, RS1, S100G, SAT1, SCARNA23, SCARNA9L, SCML1, [NAME], SH3KBP1, [NAME], SMEK3P, SMPX, SMS, STS, [NAME], TBL1X, TCEANC, TLR7, TLR8, TMEM27, TMSB4X, TMSL3, TRAPPC2, VCX, VCX2, VCX3A, VCX3B, VENTXP1, WWC3, XG, YY2, ZFX, ZNF645, [NAME]
H542 | chrX:4,776,587-5,483,647 | X | 4776587 | 5483647 | High Copy Gain | 707061 | 0 | 98 | p22.32
H542 | chrX:12,594,614-18,541,661 | X | 12594614 | 18541661 | High Copy Gain | 5947048 | 45 | 612 | p22.2 - p22.13 | ACE2, AP1S2, ASB11, ASB9, ATXN3L, BEND2, BMX, CA5B, CA5BP, CDKL5, CTPS2, CXorf15, EGFL6, FAM9C, FANCB, FIGF, FRMPD4, GEMIN8, GLRA2, GPM6B, GRPR, [NAME], [NAME], MOSPD2, NHS, OFD1, PIGA, PIR, PRPS2, RAB9A, RAI2, [NAME], [NAME], S100G, SCML1, SCML2, SYAP1, TCEANC, TLR7, TLR8, TMEM27, TMSB4X, TMSL3, TRAPPC2, [NAME]
H542 | chrX:18,762,410-42,749,185 | X | 18762410 | 42749185 | High Copy Gain | 23986776 | 87 | 2682 | p22.13 - p11.3 | ACOT9, APOO, ARX, [NAME], BCOR, CASK, CNKSR2, CXorf21, CXorf22, CXorf23, CXorf27, [NAME], [NAME], CXorf58, CXorf59, CYBB, DCAF8L1, DCAF8L2, DDX3X, [NAME], DMD, DYNLT3, EIF1AX, EIF2S3, FAM47A, FAM47B, FAM47C, FAM48B1, FAM48B2, FTHL17, GK, GPR34, GPR64, GPR82, IL1RAPL1, KLHL15, [NAME], LANCL3, LOC100132163, LOC100132831, LOC729609, MAGEB1, MAGEB10, MAGEB16, MAGEB18, [NAME], MAGEB3, MAGEB4, MAGEB6, MAP3K15, MAP3K7IP3, MAP7D2, [NAME], MED14, MID1IP1, NR0B1, NYX, OTC, PCYT1B, [NAME], [NAME], PHEX, PHKA2, [NAME], PPP1R2P9, PRDX4, PRRG1, PTCHD1, RPGR, RPS6KA3, SAT1, SCARNA23, SCARNA9L, SH3KBP1, SMEK3P, SMPX, SMS, SRPX, SYTL5, TMEM47, TSPAN7, USP9X, VENTXP1, XK, YY2, ZFX, ZNF645
H542 | chrX:43,835,298-44,894,070 | X | 43835298 | 44894070 | High Copy Gain | 1058773 | 5 | 105 | p11.3 | CXorf36, DUSP21, EFHC2, FUNDC1, KDM6A
H542 | chrX:53,791,454-54,068,233 | X | 53791454 | 54068233 | High Copy Gain | 276780 | 1 | 71 | p11.22 | PHF8
H542 | chrX:69,145,460-69,160,364 | X | 69145460 | 69160364 | High Copy Gain | 14905 | 1 | 2 | q13.1 | EDA
H561 | chr7:18,640,361-18,644,713 | 7 | 18640361 | 18644713 | High Copy Gain | 4353 | 1 | 2 | p21.1 | HDAC9
H561 | chr7:26,974,854-27,660,431 | 7 | 26974854 | 27660431 | High Copy Gain | 685578 | 15 | 295 | p15.2 | EVX1, HIBADH, HOXA1, HOXA10, HOXA11, HOXA11AS, HOXA13, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, MIR196B
H561 | chr7:27,009,132-27,665,045 | 7 | 27009132 | 27665045 | High Copy Gain | 655914 | 15 | 165 | p15.2 | EVX1, HIBADH, HOXA1, HOXA10, HOXA11, HOXA11AS, HOXA13, HOXA2, HOXA3, HOXA4, HOXA5, HOXA6, HOXA7, HOXA9, MIR196B
H561 | chr7:28,009,126-29,445,520 | 7 | 28009126 | 29445520 | High Copy Gain | 1436395 | 6 | 466 | p15.1 | CHN2, [NAME], [NAME], JAZF1, LOC402644, TRIL
H561 | chr7:53,181,805-56,201,612 | 7 | 53181805 | 56201612 | High Copy Gain | 3019808 | 19 | 1031 | p12.1 - p11.2 | CCT6A, CHCHD2, EGFR, FKBP9L, GBAS, HPVC1, LANCL2, LOC389493, LOC442308, MRPS17, PHKG1, PSPH, SEC61G, SEPT14, SNORA15, SUMF2, VOPP1, VSTM2A, ZNF713
H561 | chr7:91,701,378-92,232,523 | 7 | 91701378 | 92232523 | High Copy Gain | 531146 | 8 | 49 | q21.2 | ANKIB1, C7orf64, CDK6, FAM133B, GATAD1, KRIT1, MGC16142, PEX1
H561 | chr7:125,301,424-125,310,746 | 7 | 125301424 | 125310746 | High Copy Gain | 9323 | 0 | 2 | q31.33
H561 | chr7:144,017,780-145,488,572 | 7 | 144017780 | 145488572 | High Copy Gain | 1470793 | 2 | 372 | q35 | CNTNAP2, [NAME]
H561 | chr7:148,146,318-148,623,386 | 7 | 148146318 | 148623386 | High Copy Gain | 477069 | 8 | 150 | [NAME] | EZH2, PDIA4, ZNF212, ZNF282, [NAME], [NAME], [NAME], ZNF786
H566 | chr17:40,816,398-40,828,197 | 17 | 40816398 | 40828197 | High Copy Gain | 11800 | 1 | 2 | q21.31 | [NAME]
H566 | chr17:69,002,110-69,004,120 | 17 | 69002110 | 69004120 | High Copy Gain | 2011 | 1 | 2 | q25.1 | SDK2
H566 | chr17:70,465,916-70,485,128 | 17 | 70465916 | 70485128 | High Copy Gain | 19213 | 1 | 2 | q25.1 | C17orf28
H566 | chr17:73,278,510-73,284,053 | 17 | 73278510 | 73284053 | High Copy Gain | 5544 | 0 | 2 | q25.3
H566 | chr17:76,773,338-76,780,553 | 17 | 76773338 | 76780553 | High Copy Gain | 7216 | 1 | 2 | q25.3 | AZI1
H566 | chr19:18,479,180-18,492,684 | 19 | 18479180 | 18492684 | High Copy Gain | 13505 | 1 | 2 | p13.11 | ELL
H566 | chr19:51,991,873-52,010,197 | 19 | 51991873 | 52010197 | High Copy Gain | 18325 | 0 | 2 | q13.32
H566 | chrX:39,845,906-39,873,082 | X | 39845906 | 39873082 | High Copy Gain | 27177 | 1 | 2 | p11.4 | BCOR
H601 | chr4:54,104,699-54,105,859 | 4 | 54104699 | 54105859 | High Copy Gain | 1161 | 1 | 2 | q12 | [NAME]
H601 | chr4:54,660,365-55,061,632 | 4 | 54660365 | 55061632 | High Copy Gain | 401268 | 2 | 68 | q12 | GSX2, PDGFRA
H601 | chr10:44,188,114-44,191,311 | 10 | 44188114 | 44191311 | High Copy Gain | 3198 | 1 | 2 | q11.21 | CXCL12
H716 | chr1:190,161,903-190,174,228 | 1 | 190161903 | 190174228 | High Copy Gain | 12326 | 0 | 2 | q31.2
H716 | chr11:3,841,558-3,966,930 | 11 | 3841558 | 3966930 | High Copy Gain | 125373 | 1 | 29 | p15.4 | STIM1
H716 | chr12:49,769,197-50,843,397 | 12 | 49769197 | 50843397 | High Copy Gain | 1074201 | 16 | 190 | q13.13 | ACVR1B, ACVRL1, ANKRD33, BIN2, C12orf44, CELA1, DAZAP2, [NAME], GALNT6, GRASP, NR4A1, POU6F1, SCN8A, SLC4A8, SMAGP, TFCP2
H716 | chr12:56,351,794-57,224,781 | 12 | 56351794 | 57224781 | High Copy Gain | 872988 | 14 | 133 | q14.1 | AGAP2, AVIL, CDK4, [NAME], CYP27B1, FAM119B, LOC100130776, [NAME], [NAME], MIR26A2, OS9, TSFM, TSPAN31, XRCC6BP1
H716 | chr12:57,235,653-59,067,605 | 12 | 57235653 | 59067605 | High Copy Gain | 1831953 | 2 | 258 | q14.1 | LRIG3, SLC16A7
H716 | chr17:26,615,922-26,664,117 | 17 | 26615922 | 26664117 | High Copy Gain | 48196 | 3 | 3 | q11.2 | EVI2B, NF1, OMG
TB2440 | chr7:48,588,063-48,625,652 | 7 | 48588063 | 48625652 | High Copy Gain | 37590 | 1 | 16 | p12.3 | ABCA13
TB2440 | chr7:50,058,294-50,116,454 | 7 | 50058294 | 50116454 | High Copy Gain | 58161 | 2 | 15 | p12.2 | C7orf72, ZPBP
TB2440 | chr7:50,327,734-50,742,713 | 7 | 50327734 | 50742713 | High Copy Gain | 414980 | 4 | 201 | p12.2 | DDC, [NAME], GRB10, IKZF1
TB2440 | chr7:54,756,002-55,362,335 | 7 | 54756002 | 55362335 | High Copy Gain | 606334 | 2 | 232 | p11.2 | EGFR, SEC61G
TB2440 | chrX:93,339,213-94,194,853 | X | 93339213 | 94194853 | High Copy Gain | 855641 | 0 | 170 | q21.32 - q21.33
TB2440 | chrX:113,728,200-114,068,959 | X | 113728200 | 114068959 | High Copy Gain | 340760 | 8 | 66 | q23 | HTR2C, [NAME], MIR1298, MIR1911, MIR1912, MIR448, MIR764, SNORA35
TB2440 | chrX:120,442,659-120,917,388 | X | 120442659 | 120917388 | High Copy Gain | 474730 | 0 | 101 | q24 - q25
TB2607 | chr7:54,807,979-55,416,763 | 7 | 54807979 | 55416763 | High Copy Gain | 608785 | 2 | 230 | p11.2 | EGFR, [NAME]
TB2607 | chr12:56,351,794-56,748,411 | 12 | 56351794 | 56748411 | High Copy Gain | 396618 | 14 | 176 | q14.1 | AGAP2, AVIL, CDK4, [NAME], CYP27B1, FAM119B, LOC100130776, [NAME], [NAME], MIR26A2, OS9, TSFM, TSPAN31, XRCC6BP1
TB3198 | chr12:413,249-7,848,237 | 12 | 413249 | 7848237 | High Copy Gain | 7434989 | 104 | 1819 | p13.33 - p13.31 | ACRBP, [NAME], ADIPOR2, AKAP3, ANO2, APOBEC1, ATN1, B4GALNT3, C12orf32, C12orf4, C12orf5, C12orf53, C12orf57, C1R, C1RL, C1S, CACNA1C, [NAME], CCDC77, CCND2, CD163, CD163L1, CD27, CD4, CD9, CDCA3, CHD4, CLEC4C, CLSTN3, COPS7A, DCP1B, DPPA3, DYRK4, EFCAB4B, EMG1, [NAME], [NAME], [NAME], FGF23, [NAME], FKBP4, FOXM1, GALNT8, GAPDH, GDF3, [NAME], [NAME], HSN2, IFFO1, [NAME], ITFG2, KCNA1, KCNA5, [NAME], [NAME], [NAME], LOC100292680, [NAME], LOC360030, LOC678655, LPAR5, LPCAT3, LRRC23, LRTM2, LTBR, MIR141, MIR200C, MLF2, MRPL51, NANOG, NCAPD2, NDUFA9, NINJ2, NOP2, NRIP2, NTF3, PARP11, PEX5, PHB2, PLEKHG6, PRMT8, PTMS, PTPN6, RAD51AP1, RAD52, RBP5, RPL13P5, [NAME], SCARNA11, SCARNA12, SCNN1A, SPSB2, TAPBPL, TEAD4, TNFRSF1A, TPI1, TSPAN9, TULP3, USP5, VAMP1, VWF, [NAME], WNT5B, ZNF384
TB3198 | chr12:8,901,512-9,154,454 | 12 | 8901512 | 9154454 | High Copy Gain | 252943 | 6 | 115 | p13.31 | [NAME], A2ML1, KLRG1, LOC144571, M6PR, PHC1
TB3198 | chr12:13,360,036-13,581,606 | 12 | 13360036 | 13581606 | High Copy Gain | 221571 | 1 | 139 | p13.1 | C12orf36
TB3198 | chr12:14,062,063-19,406,019 | 12 | 14062063 | 19406019 | High Copy Gain | 5343957 | 26 | 923 | p13.1 - p12.3 | ARHGDIB, ART4, ATF7IP, C12orf60, C12orf69, CAPZA3, DERA, EPS8, ERP27, GUCY2C, H2AFJ, HIST4H4, LMO3, MGP, MGST1, PDE6H, PIK3C2G, PLBD1, PLCZ1, PLEKHA5, PTPRO, RERG, RERGL, SLC15A5, STRAP, WBP11
TB3198 | chr12:21,977,897-27,156,638 | 12 | 21977897 | 27156638 | High Copy Gain | 5178742 | 25 | 1378 | p12.1 - p11.23 | ABCC9, [NAME], BHLHE41, C12orf11, C12orf67, C12orf71, C12orf77, [NAME], CMAS, DAD1L, ETNK1, FGFR1OP2, IFLTD1, ITPR2, [NAME], KRAS, LRMP, LYRM5, MED21, MIR920, RASSF8, SOX5, SSPN, ST8SIA1, TM7SF3
TB3198 | chr12:27,744,542-35,400,000 | 12 | 27744542 | 35400000 | High Copy Gain | 7655459 | 27 | 1390 | p11.22 - q11 | ALG10, AMN1, BICD1, C12orf35, C12orf72, CAPRIN2, CCDC91, DDX11, DENND5B, DNM1L, ERGIC2, FAM60A, FAR2, FGD4, FLJ13224, H3F3C, IPO8, KLHDC5, LOC100133893, MRPS35, OVCH1, PKP2, PTHLH, [NAME], TMTC1, TSPAN11, YARS2
TB3198 | chr12:32,790,376-33,813,486 | 12 | 32790376 | 33813486 | High Copy Gain | 1023111 | 3 | 316 | p11.21 - p11.1 | PKP2, [NAME], YARS2
TB3198 | chrX:32,234,184-32,454,805 | X | 32234184 | 32454805 | High Copy Gain | 220622 | 1 | 79 | p21.1 | DMD
TB3353 | chr10:3,137,011-29,056,319 | 10 | 3137011 | 29056319 | High Copy Gain | 25919309 | 136 | 6544 | p15.2 - p11.23 | ABI1, ACBD5, ACBD7, AKR1C1, AKR1C2, AKR1C3, AKR1C4, AKR1CL1, AKR1E2, ANKRD16, ANKRD26, APBB1IP, ARHGAP21, ARL5B, ARMC3, ARMC4, ASB13, ATP5C1, BAMBI, BEND7, [NAME], C10orf111, C10orf113, C10orf114, C10orf140, C10orf18, C10orf47, C10orf50, C10orf67, C1QL3, CACNB2, CALML3, [NAME], CAMK1D, CCDC3, CDC123, CDNF, [NAME], CUBN, CUGBP2, DCLRE1C, DHTKD1, DNAJC1, ECHDC3, ENKUR, FAM107B, FAM171A1, FAM188A, FAM23A, FBXO18, FLJ45983, FRMD4A, [NAME], GATA3, GDI2, GPR158, HSPA14, [NAME], IL2RA, ITGA8, ITIH2, ITIH5, KIAA1217, KIN, KLF6, LOC100128811, LOC100216001, LOC254312, LOC283070, LOC338588, LOC387646, LOC731789, MASTL, MCM10, [NAME], MIR1265, MIR1915, MIR511-1, MIR511-2, MIR603, MKX, MLLT10, MPP7, [NAME], MRC1L1, MSRB2, MYO3A, NCRNA00202, NEBL, NET1, NMT2, NSUN6, NUDT5, OLAH, OPTN, OTUD1, PDSS1, PFKFB3, PFKP, PHYH, PIP4K2A, PITRM1, PLXDC2, PRINS, PRKCQ, [NAME], PRTFDC1, PTCHD3, PTER, PTF1A, PTPLA, RAB18, [NAME], RPP38, [NAME], SEC61A2, SEPHS1, SFMBT2, SFTA1P, SLC39A12, SPAG6, ST8SIA6, STAM, SUV39H2, TAF3, THNSL1, TRDMT1, TUBAL3, UCMA, UCN3, UPF2, USP6NL, VIM, WAC, YME1L1, tAKR
TB3353 | chr10:29,313,744-29,339,498 | 10 | 29313744 | 29339498 | High Copy Gain | 25755 | 0 | 15 | p11.23
TB3837 | chr4:1,495,991-1,887,040 | 4 | 1495991 | 1887040 | High Copy Gain | 391050 | 7 | 38 | p16.3 | FAM53A, FGFR3, LETM1, SLBP, TACC3, TMEM129, WHSC1
TB3837 | chr7:112,362,684-112,456,226 | 7 | 112362684 | 112456226 | High Copy Gain | 93543 | 1 | 16 | q31.1 | C7orf60
TB3837 | chr7:116,106,700-116,358,086 | 7 | 116106700 | 116358086 | High Copy Gain | 251387 | 2 | 47 | q31.2 | CAPZA2, MET
TB3837 | chr7:119,118,446-120,089,829 | 7 | 119118446 | 120089829 | High Copy Gain | 971384 | 1 | 96 | q31.31 | KCND2
X245 | chr7:55,201,670-55,954,977 | 7 | 55201670 | 55954977 | High Copy Gain | 753308 | 7 | 134 | p11.2 | EGFR, FKBP9L, LANCL2, LOC442308, SEPT14, VOPP1, ZNF713
X245 | chr19:49,562,210-49,569,678 | 19 | 49562210 | 49569678 | High Copy Gain | 7469 | 0 | 2 | q13.31
X245 | chr20:27,100,000-28,172,124 | 20 | 27100000 | 28172124 | High Copy Gain | 1072125 | 0 | 2 | [NAME]
X256 | chr9:44,805,022-44,813,196 | 9 | 44805022 | 44813196 | High Copy Gain | 8175 | 0 | 1 | p11.2
X256 | chr9:67,656,950-67,660,241 | 9 | 67656950 | 67660241 | High Copy Gain | 3292 | 0 | 0 | q12
X256 | chr20:27,100,000-28,172,124 | 20 | 27100000 | 28172124 | High Copy Gain | 1072125 | 0 | 2 | [NAME]
X256 | chrY:13,357,186-13,535,818 | Y | 13357186 | 13535818 | High Copy Gain | 178633 | 2 | 1 | q11.21 | DDX3Y, USP9Y
X256 | chrY:20,176,596-20,376,701 | Y | 20176596 | 20376701 | High Copy Gain | 200106 | 3 | 3 | q11.222 | CYorf15A, CYorf15B, [NAME]
X317 | chr3:139,662,394-140,093,582 | 3 | 139662394 | 140093582 | High Copy Gain | 431189 | 4 | 38 | q22.3 | CEP70, [NAME], FAIM, PIK3CB
X317 | chr5:42,374,520-42,986,571 | 5 | 42374520 | 42986571 | High Copy Gain | 612052 | 3 | 68 | p13.1 - p12 | CCDC152, GHR, SEPP1
X317 | chr5:43,008,452-45,366,594 | 5 | 43008452 | 45366594 | High Copy Gain | 2358143 | 13 | 219 | p12 | C5orf28, C5orf34, C5orf39, CCL28, FGF10, HCN1, [NAME], LOC153684, MGC42105, MRPS30, NNT, PAIP1, ZNF131
X317 | chr5:45,390,099-45,703,349 | 5 | 45390099 | 45703349 | High Copy Gain | 313251 | 1 | 23 | p12 | HCN1
X317 | chr5:65,054,869-65,193,743 | 5 | 65054869 | 65193743 | High Copy Gain | 138875 | 1 | 41 | q12.3 | NLN
X317 | chr7:54,561,014-55,081,065 | 7 | 54561014 | 55081065 | High Copy Gain | 520052 | 3 | 97 | p11.2 | EGFR, SEC61G, VSTM2A
X317 | chr7:55,096,614-55,264,627 | 7 | 55096614 | 55264627 | High Copy Gain | 168014 | 1 | 75 | p11.2 | EGFR
X317 | chr8:96,934,843-96,951,974 | 8 | 96934843 | 96951974 | High Copy Gain | 17132 | 0 | 2 | q22.1
X317 | chr8:106,395,404-106,426,188 | 8 | 106395404 | 106426188 | High Copy Gain | 30785 | 1 | 2 | q23.1 | ZFPM2
X317 | chr8:128,644,838-128,872,798 | 8 | 128644838 | 128872798 | High Copy Gain | 227961 | 1 | 55 | q24.21 | MYC
X317 | [NAME] | 8 | 129717369 | 130387628 | High Copy Gain | 670260 | 0 | 117 | q24.21
X317 | chr9:13,801,349-13,809,925 | 9 | 13801349 | 13809925 | High Copy Gain | 8577 | 0 | 2 | p23
X317 | chr9:31,338,706-36,068,383 | 9 | 31338706 | 36068383 | High Copy Gain | 4729678 | 83 | 831 | p21.1 - p13.3 | ACO1, ANXA2P2, APTX, AQP3, AQP7, ARID3C, B4GALT1, BAG1, C9orf100, C9orf128, C9orf131, C9orf144, C9orf144B, C9orf23, C9orf24, C9orf25, CA9, CCDC107, CCL19, CCL21, CCL27, CD72, CHMP5, [NAME], CREB3, DCAF12, DCTN3, DDX58, DNAI1, DNAJA1, DNAJB5, ENHO, FAM166B, FANCG, GALT, GBA2, HINT2, HRCT1, IL11RA, KIAA1045, KIAA1161, KIAA1539, KIF24, LOC158376, LOC158381, LOC415056, LOC92973, MSMP, NDUFB6, NFX1, NOL6, [NAME], [NAME], OR13J1, OR2S2, PIGO, PRSS3, PTENP1, RECK, RGP1, RMRP, RUSC2, SIGMAR1, [NAME], [NAME], SNORD121A, SNORD121B, SPAG8, SPINK4, STOML2, SUGT1P, TAF1L, TESK1, TLN1, TMEM215, TMEM8B, TOPORS, TPM2, UBAP1, UBAP2, UBE2R2, UNC13B, VCP
X317 | chr9:67,656,950-67,660,241 | 9 | 67656950 | 67660241 | High Copy Gain | 3292 | 0 | 0 | q12
X317 | chr10:44,188,114-44,191,311 | 10 | 44188114 | 44191311 | High Copy Gain | 3198 | 1 | 2 | q11.21 | CXCL12
X317 | chrX:14,099,745-16,600,943 | X | 14099745 | 16600943 | High Copy Gain | 2501199 | 19 | 246 | [NAME] | ACE2, AP1S2, ASB11, ASB9, BMX, CA5B, CA5BP, CTPS2, FANCB, FIGF, [NAME], GRPR, [NAME], MOSPD2, PIGA, PIR, S100G, TMEM27, [NAME]
X317 | chrX:18,034,848-22,243,244 | X | 18034848 | 22243244 | High Copy Gain | 4208397 | 25 | 386 | p22.13 - p22.11 | BEND2, [NAME], CNKSR2, CXorf23, [NAME], GPR64, KLHL34, LOC100132163, LOC729609, MAP3K15, MAP7D2, [NAME], [NAME], PHEX, PHKA2, PPEF1, RPS6KA3, RS1, SCARNA9L, [NAME], SH3KBP1, SMPX, SMS, YY2, ZNF645
X317 | chrX:22,416,842-27,849,668 | X | 22416842 | 27849668 | High Copy Gain | 5432827 | 23 | 694 | p22.11 - p21.3 | ACOT9, APOO, ARX, CXorf58, DCAF8L2, [NAME], EIF2S3, FAM48B1, FAM48B2, KLHL15, MAGEB10, MAGEB18, MAGEB6, PCYT1B, [NAME], [NAME], PRDX4, PTCHD1, SAT1, [NAME], SMEK3P, VENTXP1, ZFX
X317 | chrX:30,287,921-50,460,310 | X | 30287921 | 50460310 | High Copy Gain | 20172390 | 155 | 2012 | p21.2 - p11.22 | [NAME], ARAF, [NAME], BCOR, CACNA1F, CASK, CCDC120, CCDC22, CCNB3, CDK16, CFP, CHST7, [NAME], CXorf21, CXorf22, CXorf27, CXorf30, CXorf36, CXorf38, CXorf59, CYBB, DDX3X, DGKK, DMD, DUSP21, DYNLT3, EBP, EFHC2, ELK1, ERAS, FAM47A, FAM47B, FAM47C, FOXP3, FTHL17, FTSJ1, FUNDC1, GAGE1, GAGE10, [NAME], GAGE12C, GAGE12D, GAGE12E, [NAME], GAGE12G, GAGE12H, GAGE12I, GAGE12J, GAGE13, GAGE2A, GAGE2B, GAGE2C, GAGE2D, GAGE2E, GAGE4, GAGE5, GAGE6, GAGE7, [NAME], GATA1, GK, GLOD5, GPKOW, GPR34, GPR82, GRIPAP1, HDAC6, INE1, KCND1, KDM6A, LANCL3, LOC100132831, LOC100133957, LOC158572, LOC401588, MAGEB16, MAGIX, MAOA, [NAME], MAP3K7IP3, MED14, MID1IP1, MIR188, [NAME], MIR222, MIR362, MIR500, MIR501, MIR502, MIR532, MIR660, NDP, NDUFB11, NYX, OTC, OTUD5, PAGE1, PAGE4, PCSK1N, PHF16, PIM2, PLP2, PORCN, PPP1R2P9, PPP1R3F, PQBP1, PRAF2, PRICKLE3, PRRG1, RBM10, RBM3, RGN, RP2, RPGR, SHROOM4, SLC35A2, SLC38A5, SLC9A7, SNORA11C, SPACA5, SPACA5B, SRPX, SSX1, SSX3, SSX4, SSX4B, SSX5, SSX6, SSX9, SUV39H1, SYN1, SYP, SYTL5, TBC1D25, [NAME], TIMM17B, TIMP1, TMEM47, TSPAN7, UBA1, USP11, USP27X, USP9X, UXT, WAS, WDR13, [NAME], XK, ZNF157, ZNF182, ZNF41, ZNF630, ZNF673, ZNF674, ZNF81
X317 | chrX:88,396,560-88,512,985 | X | 88396560 | 88512985 | High Copy Gain | 116426 | 0 | 2 | q21.31
X317 | chrX:149,130,900-149,158,095 | X | 149130900 | 149158095 | High Copy Gain | 27196 | 1 | 2 | q28 | MIR2114
X897 | chr10:44,188,114-44,191,311 | 10 | 44188114 | 44191311 | High Copy Gain | 3198 | 1 | 2 | q11.21 | CXCL12
X897 | chr10:51,482,415-51,627,498 | 10 | 51482415 | 51627498 | High Copy Gain | 145084 | 3 | 2 | q11.23 | ASAH2, FAM21A, FAM21B
X897 | chr10:59,409,739-59,410,539 | 10 | 59409739 | 59410539 | High Copy Gain | 801 | 0 | 2 | q21.1
X897 | chr13:22,787,156-22,836,053 | 13 | 22787156 | 22836053 | High Copy Gain | 48898 | 2 | 10 | q12.12 | SACS, SGCG
X897 | chr14:46,093,780-46,575,629 | 14 | 46093780 | 46575629 | High Copy Gain | 481850 | 2 | 67 | q21.3 | MDGA2, RPL10L
X897 | chr14:97,790,193-97,797,709 | 14 | 97790193 | 97797709 | High Copy Gain | 7517 | 0 | 2 | [NAME]