Spreadsheet: d66edb39-f506-4fc6-9421-abc165b4dda3
Sheet: Sheet1

Unnamed: 0 | Unnamed: 1 | Unnamed: 2 | Unnamed: 3 | Unnamed: 4
SF | Family1 | Fragment(s) aquired | Copy number in B73 | bp
RLC | bote | FAD-binding family | 1 | 138
RLC | debeh | HAT dimerisation family | 1 | 166
RLC | ebel | [NAME] gene family candidate, 0006430 | 1 | 117
RLC | ebel | [NAME] gene family candidate, 0011514 | 1 | 106
RLC | ebel | [NAME] gene family candidate, 0012045 | 2 | 166
RLC | ebel | WD40 repeat family | 2 | 564
RLC | erev | Peptidase aspartic, catalytic family | 2 | 406
RLC | fourf | [NAME], serine carboxypeptidase family | 17 | 1853
RLC | [NAME] | [NAME], serine carboxypeptidase family | 7 | 742
RLC | homy | ABC transporter related family | 12 | 3565
RLC | iseb | Typical [NAME] gene family | 2 | 275
RLC | ji | AAA ATPase, core family | 2 | 220
RLC | ji | Chaperonin Cpn60/TCP-1 family | 1 | 75
RLC | ji | Coatomer, epsilon subunit family | 1 | 162
RLC | ji | Cystathionine beta-synthase, core family | 2 | 172
RLC | ji | Heat shock protein 70 family | 2 | 350
RLC | ji | Inorganic H+ pyrophosphatase family | 2 | 442
RLC | ji | Pentatricopeptide repeat family | 2 | 204
RLC | ji | Plant peroxidase family | 1 | 80
RLC | ji | Protein kinase, core family | 2 | 203
RLC | ji | [NAME] gene family candidate, 0010468 | 1 | 68
RLC | ji | Zinc finger, TTF-type family | 1 | 1458
RLC | opie | Peptidase S14, ClpP family | 2 | 246
RLC | opie | Regulator of chromosome condensation/beta-lactamase-inhibitor protein II family | 1 | 211
RLC | sofi | [NAME] gene family candidate, 0006675 | 2 | 148
RLC | ubel | Ribulose-phosphate binding barrel family | 4 | 812
RLG | anysaf | [NAME] gene family candidate, 0008142 | 1 | 53
RLG | bogu | Peptidase aspartic, catalytic family | 5 | 1233
RLG | bosohe | Peptidase aspartic, catalytic family | 20 | 6340
RLG | bygum | Homeobox family | 1 | 98
RLG | cinful-zeon | AAA ATPase, core family | 1 | 153
RLG | cinful-zeon | Caffeic acid O-methyltransferase family | 24 | 1668
RLG | cinful-zeon | DNA polymerase III, subunits gamma and tau family | 1 | 108
RLG | cinful-zeon | [NAME] dehydrogenase family | 2 | 168
RLG | cinful-zeon | Ribosomal protein [NAME] family | 1 | 55
RLG | cinful-zeon | [NAME] gene family candidate, 0008745 | 1 | 158
RLG | cinful-zeon | [NAME] gene family candidate, 0011056 | 1 | 68
RLG | ewib | Helicase, C-terminal family | 5 | 461
RLG | ewiut | Peptidase aspartic, catalytic family | 1 | 93
RLG | flip | [NAME] factor, type A family | 2 | 106
RLG | flip | Short organization (SHO) gene family | 1 | 142
RLG | [NAME] | Chromo family | 2 | 232
RLG | huck | Armadillo-like helical family | 1 | 71
RLG | huck | Caffeic acid O-methyltransferase family | 14 | 841
RLG | huck | Peptidase aspartic, catalytic family | 1 | 1147
RLG | huck | [NAME] gene family candidate, 0011056 | 1 | 74
RLG | iwim | Peptidase aspartic, catalytic family | 2 | 140
RLG | jaws | Peptidase aspartic, catalytic family | 2 | 132
RLG | [NAME] | Peptidase aspartic, catalytic family | 9 | 8780
RLG | maro | Chromo family | 3 | 199
RLG | [NAME] | Peptidase aspartic, catalytic family | 1 | 113
RLG | mywur | Peptidase aspartic, catalytic family | 1 | 74
RLG | oguod | Chromo family | 1 | 62
RLG | ojokat | Chromo family | 2 | 156
RLG | prem1 | AAA ATPase, core family | 1 | 61
RLG | prem1 | Protein phosphatase 2C-related family | 1 | 93
RLG | prem1 | [NAME] gene family candidate, 0006743 | 1 | 107
RLG | prem1 | [NAME] gene family candidate, 0011056 | 7 | 476
RLG | prem1 | [NAME] gene family candidate, 0011109 | 5 | 411
RLG | puck | Homeobox family | 12 | 2523
RLG | puck | [NAME] protein family | 4 | 207
RLG | puck | [NAME] gene family candidate, 0007576 | 1 | 258
RLG | sowu | Chromo family | 1 | 65
RLG | suda | Peptidase aspartic, catalytic family | 1 | 69
RLG | ubid | Chromo family | 2 | 150
RLG | udav | Peptidase aspartic, catalytic family | 2 | 124
RLG | [NAME] | Chromo family | 2 | 118
RLG | uwew | Peptidase aspartic, catalytic family | 1 | 92
RLG | vufi | Chromo family | 1 | 70
RLG | weaniv | Peptidase aspartic, catalytic family | 3 | 267
RLG | wuwe | Chromo family | 2 | 118
RLG | ytub | Chromo family | 1 | 94
RLX | [NAME] | [NAME] gene family candidate, 0011592 | 2 | 1102
RLX | beby | C2 calcium-dependent membrane targeting family | 1 | 104
RLX | bs1 | [NAME] dehydrogenase family | 4 | 1170
RLX | bs1 | Mitochodrial transcription termination factor-related family | 5 | 405
RLX | bs1 | Pentatricopeptide repeat family | 2 | 1002
RLX | bs1 | Transcription factor [NAME]/aspartyl beta-hydroxylase family | 1 | 92
RLX | [NAME] | Peptidase M16, C-terminal family | 1 | 127
RLX | gotur | Cytochrome b5 family | 1 | 169
RLX | gufa | Heat shock protein 70 family | 2 | 296
RLX | ifab | Ribose 5-phosphate isomerase family | 3 | 235
RLX | jeli | Pentatricopeptide repeat family | 1 | 402
RLX | jeli | Protein of unknown function DUF248, methyltransferase putative family | 5 | 2430
RLX | jeli | [NAME] gene family candidate, 0010431 | 5 | 800
RLX | jeli | [NAME] gene family candidate, 0011246 | 1 | 115
RLX | jupek | Peptidase S9A, prolyl oligopeptidase family | 3 | 712
RLX | kinosi | Protein prenyltransferase family | 1 | 145
RLX | [NAME] | Peptidase aspartic, catalytic family | 13 | 9474
RLX | mafigi | Raffinose synthase family | 2 | 202
RLX | mako | Heat shock protein [NAME] family | 2 | 480
RLX | mibaab | AAA ATPase, core family | 1 | 952
RLX | mibaab | Copper amine oxidase family | 1 | 57
RLX | mibaab | Pathogenesis-related transcriptional factor and ERF family | 2 | 362
RLX | mibaab | [NAME] gene family candidate, 0007820 | 1 | 53
RLX | mibaab | Thiolase family | 4 | 460
RLX | mopin | Glucose/ribitol dehydrogenase family | 3 | 261
RLX | mulaf | Xanthine/uracil/vitamin C permease family | 1 | 394
RLX | name | Snf7 family | 1 | 94
RLX | [NAME] | Enoyl-CoA hydratase/isomerase family | 2 | 519
RLX | [NAME] | Malic oxidoreductase family | 3 | 411
RLX | nyjuvy | [NAME] gene family candidate, 0009691 | 1 | 95
RLX | oweiw | AAA ATPase, core family | 6 | 780
RLX | oweiw | Elongation factor G, III and V family | 1 | 119
RLX | petopi | Galactokinase family | 2 | 428
RLX | raga | [NAME] gene family candidate, 0007733 | 2 | 236
RLX | ruwi | Cytochrome P450 family | 1 | 103
RLX | ruwi | [NAME] gene family candidate, 0011119 | 1 | 65
RLX | saahol | Protein prenyltransferase family | 1 | 145
RLX | [NAME] | Tubulin family | 3 | 186
RLX | tuteh | Plant peroxidase family | 1 | 72
RLX | tuteh | [NAME] gene family candidate, 0006969 | 1 | 177
RLX | tuteh | Zinc finger, RING-type family | 1 | 104
RLX | vafim | Cinnamyl alcoholdehydrogenase family | 1 | 181
RLX | vedi | Histone H3 family | 2 | 390
RLX | vedi | [NAME]:cholesterol acyltransferase family | 2 | 572
RLX | wiolus | Armadillo-like helical family | 3 | 725
RLX | wiru | [NAME] gene family candidate, 0011592 | 1 | 324
RLX | yemi | Transcription factor [NAME]/aspartyl beta-hydroxylase family | 1 | 668
RLX | unk | Aminotransferase, class I and II family | 1 | 87
RLX | unk | ATP-dependent DNA helicase [NAME] family | 1 | 110
RLX | unk | Caffeic acid O-methyltransferase family | 4 | 255
RLX | unk | Chaperonin clpA/B family | 1 | 182
RLX | unk | [NAME] Cpn10 family | 1 | 163
RLX | unk | Chromo family | 2 | 118
RLX | unk | Cinnamyl alcoholdehydrogenase family | 1 | 181
RLX | unk | Copper amine oxidase family | 1 | 57
RLX | unk | Cystathionine beta-synthase, core family | 1 | 82
RLX | unk | Cytochrome P450 family | 1 | 248
RLX | unk | Enoyl-CoA hydratase/isomerase family | 1 | 266
RLX | unk | Exoribonuclease, phosphorolytic domain 1 family | 1 | 186
RLX | unk | F-box family | 1 | 272
RLX | unk | Glyoxalase/extradiol ring-cleavage dioxygenase family | 1 | 132
RLX | unk | Heat shock protein 70 family | 3 | 248
RLX | unk | Homeobox family | 4 | 619
RLX | unk | HSP20-like chaperone family | 1 | 100
RLX | unk | Laccase family | 1 | 232
RLX | unk | Mandelate racemase/muconate lactonizing enzyme family | 1 | 67
RLX | unk | Mitochodrial transcription termination factor-related family | 1 | 81
RLX | unk | NPH3 family | 2 | 120
RLX | unk | Nucleotide-binding, alpha-beta plait family | 1 | 137
RLX | unk | Pectate lyase family | 1 | 208
RLX | unk | Pentatricopeptide repeat family | 1 | 178
RLX | unk | Peptidase aspartic, catalytic family | 19 | 9271
RLX | unk | [NAME], serine carboxypeptidase family | 4 | 384
RLX | unk | Peptidase S14, ClpP family | 1 | 136
RLX | unk | Peptidase S9A, prolyl oligopeptidase family | 1 | 246
RLX | unk | Pheophorbide a oxygenase family | 1 | 410
RLX | unk | Phytochrome A/B/C/D/E family | 1 | 308
RLX | unk | Prephenate dehydratase family | 1 | 208
RLX | unk | Protein of unknown function DUF266, plant family | 2 | 258
RLX | unk | Protein of unknown function DUF569 family | 1 | 117
RLX | unk | Protein of unknown function DUF6, transmembrane family | 1 | 132
RLX | unk | Protein of unknown function DUF914, eukaryotic family | 2 | 938
RLX | unk | Protein phosphatase 2C-related family | 4 | 363
RLX | unk | Protein-L-isoaspartate(D-aspartate) O-methyltransferase family | 1 | 130
RLX | unk | [NAME], N-terminal family | 1 | 124
RLX | unk | [NAME] rich family | 1 | 223
RLX | unk | Ribosomal protein L14b/L23e family | 1 | 55
RLX | unk | Ribosomal protein L4/L1e, archeabacterial like family | 2 | 108
RLX | unk | Ribosomal protein [NAME] family | 3 | 577
RLX | unk | [NAME] gene family candidate, 0006076 | 1 | 150
RLX | unk | [NAME] gene family candidate, 0008584 | 1 | 354
RLX | unk | [NAME] gene family candidate, 0009691 | 1 | 95
RLX | unk | [NAME] gene family candidate, 0010797 | 1 | 108
RLX | unk | [NAME] gene family candidate, 0011119 | 1 | 65
RLX | unk | [NAME] polymerase [NAME], domain 7 family | 1 | 201
RLX | unk | SANT, DNA-binding family | 1 | 66
RLX | unk | Thiamine pyrophosphate enzyme, N-terminal TPP binding region family | 2 | 362
Table S2. Gene capture events uncovered in the full-length LTR-retrotransposons
mined from the B73 genome.
1unk = unknown family designation