Spreadsheet: 2f5e2217-6f72-4490-908b-17fc50f9512c
Sheet: Sheet1

Table S2: List of 128 causal genes. Red labels indicate if the gene is located in a genomic area of genomic amplification (+). Green labels indicate if the gene is located in an area of deletion (-). | Unnamed: 1 | Unnamed: 2 | Unnamed: 3
gene | annotation | + | -
ABCA1 | ATP-binding cassette sub-family A member 1
ACP1 | Low molecular weight phosphotyrosine protein phosphatase
ADCY8 | Adenylate cyclase type 8
AGA | N(4)-(beta-N-acetylglucosaminyl)-L-asparaginase
AHR | [NAME] hydrocarbon receptor
AKAP6 | A-kinase anchor protein 6
AKAP9 | A-kinase anchor protein 9
AKT1 | RAC-alpha serine/threonine-protein kinase
ANXA11 | [NAME]
ANXA2 | [NAME]
APP | Amyloid beta A4 protein
ARHGAP11A | Rho GTPase-activating protein 11A
ARHGAP29 | Rho GTPase-activating protein 29
ATR | Serine/threonine-protein kinase ATR
BUB3 | Mitotic checkpoint protein BUB3
CAD | CAD protein
CAMK2G | Calcium/calmodulin-dependent protein kinase type II subunit gamma
CCNC | Cyclin-C
CDC2 | Cell division control protein 2 homolog
CDC5L | Cell division cycle 5-like protein
CDKN2A | Cyclin-dependent kinase inhibitor 2A, isoform 4
CEBPA | CCAAT/enhancer-binding protein alpha
CEP70 | Centrosomal protein of 70 kDa
CFH | Complement factor H
CHUK | Inhibitor of nuclear factor kappa-B kinase subunit alpha
COBL | [NAME] homolog
CRMP1 | Dihydropyrimidinase-related protein 1
[NAME] | Granulocyte-macrophage colony-stimulating factor
CSNK2A1 | Casein kinase II subunit alpha
CUL1 | Cullin-1
DARC | Duffy antigen/chemokine receptor
DDX56 | Probable ATP-dependent RNA helicase DDX56
DIAPH3 | Protein diaphanous homolog 3
DLC1 | Rho GTPase-activating protein 7
EFNA5 | Ephrin-A5
EGFR | Epidermal growth factor receptor
EIF2B1 | Translation initiation factor [NAME] subunit alpha
EIF3A | Eukaryotic translation initiation factor 3 subunit A
EIF3B | Eukaryotic translation initiation factor 3 subunit B
EIF3F | Eukaryotic translation initiation factor 3 subunit F
[NAME] | Engulfment and cell motility protein 1
EPB41 | Protein 4.1
ERBB4 | Receptor tyrosine-protein kinase erbB-4
ERCC6 | DNA excision repair protein ERCC-6
FAS | Tumor necrosis factor receptor superfamily member 6
FER | Tyrosine-protein kinase [NAME]
FHL2 | Four and a half LIM domains protein 2
GBAS | Protein NipSnap homolog 2
[NAME] | 1,4-alpha-glucan-branching enzyme
[NAME] | Glutathione S-transferase kappa 1
HEATR1 | HEAT repeat-containing protein 1
HSDL2 | Hydroxysteroid dehydrogenase-like protein 2
IFNA4 | Interferon alpha-4
ILK | Integrin-linked protein kinase
ITGB3BP | Centromere protein R
KITLG | Kit ligand
LMO7 | LIM domain only protein 7
MAP2K4 | Dual specificity mitogen-activated protein kinase kinase 4
MCM7 | DNA replication licensing factor [NAME]
MED10 | Mediator of RNA polymerase II transcription subunit 10
MON2 | Protein MON2 homolog
MRLC2 | [NAME] light chain
MS4A1 | B-lymphocyte antigen CD20
NDUFA4 | NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4
NDUFB8 | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial
NRXN1 | Neurexin-1-alpha
NUP205 | Nuclear pore complex protein Nup205
NUPL1 | Nucleoporin p58/p45
ORC5L | Origin recognition complex subunit 5
PARP1 | Poly [ADP-ribose] polymerase 1
PCDH7 | Protocadherin-7
POLR1A | DNA-directed [NAME] polymerase I subunit RPA1
POLR2J | DNA-directed RNA polymerase II subunit RPB11-a
POLR3A | DNA-directed RNA polymerase III subunit RPC1
POLR3B | DNA-directed RNA polymerase III subunit RPC2
POM121 | Nuclear envelope pore membrane protein POM 121
PPIA | Peptidyl-prolyl cis-trans isomerase A
PRIM1 | DNA primase small subunit
PRKAB1 | 5'-AMP-activated protein kinase subunit beta-1
PRKCA | Protein kinase C alpha type
PSAP | [NAME] polypeptide
PSMA1 | Proteasome subunit alpha type-1
PSMA4 | Proteasome subunit alpha type-4
PSMA5 | Proteasome subunit alpha type-5
PSMB1 | Proteasome subunit beta type-1
PSMC3 | 26S protease regulatory subunit 6A
PSMC6 | 26S protease regulatory subunit S10B
PTEN | Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN
PTK2B | Protein-tyrosine kinase 2-beta
PTPRD | Receptor-type tyrosine-protein phosphatase delta
PTPRJ | Receptor-type tyrosine-protein phosphatase eta
PTPRK | Receptor-type tyrosine-protein phosphatase kappa
RAI14 | [NAME]
RB1 | Retinoblastoma-associated protein
RBMX | Heterogeneous nuclear ribonucleoprotein G
RBPMS | RNA-binding protein with multiple splicing
REL | Proto-oncogene c-Rel
RGL1 | Ral guanine nucleotide dissociation stimulator-like 1
RHOBTB2 | Rho-related BTB domain-containing protein 2
RPL10 | 60S ribosomal protein L10
RPL10L | 60S ribosomal protein L10-like
RPS17 | 40S ribosomal protein S17
SEC61A2 | Protein transport protein Sec61 subunit alpha isoform 2
SF3B4 | Splicing factor 3B subunit 4
SFRS2 | Splicing factor, arginine/serine-rich 2
SFRS3 | Splicing factor, arginine/serine-rich 3
SGCB | Beta-sarcoglycan
SLC25A4 | ADP/ATP translocase 1
SLC27A2 | Very long-chain acyl-CoA synthetase
SNRPB2 | U2 small nuclear ribonucleoprotein B''
SPTA1 | Spectrin alpha chain, erythrocyte
STXBP6 | Syntaxin-binding protein 6
SYNGR1 | Synaptogyrin-1
TAF2 | Transcription initiation factor TFIID subunit 2
TERF2IP | Telomeric repeat-binding factor 2-interacting protein 1
THBS1 | Thrombospondin-1
TOP1 | DNA topoisomerase 1
TP53 | Cellular tumor antigen p53
TRIP13 | Thyroid receptor-interacting protein 13
[NAME] | Protein TSSC1
U2AF2 | Splicing factor U2AF 65 [NAME] subunit
UBE3A | Ubiquitin-protein ligase E3A
USF2 | Upstream stimulatory factor 2
VAV3 | Guanine nucleotide exchange factor VAV3
VDAC2 | Voltage-dependent anion-selective channel protein 2
VIM | Vimentin
VWF | [NAME] factor
[NAME] | Zinc finger protein 107