tbuckley/cabot-search huggingface dataset:
Abstract 6051: Discovery of oral SMARCA2 degraders for the treatment of SMARCA4 mutant tumors
Authors: Jose C. Clemente, Lal Harikrishnan, Steve Knight, Debangshu Samanta, Zhenwu Li, Rakesh Nagilla, Nathan Kendsersky, Shreyas Joshi, Peter Orth, Matt Tudor, Qiaolin Deng, Clemente Aguilar-Bonavides, Elham Behshad, Zhihua Sui, Corey Strickland, Larry J. Jolivette, Helai P. Mohammad
Journal: Cancer Research (2024)

Abstract The paralog enzymes SMARCA2 and SMARCA4 are mutually exclusive members within the SWI/SNF chromatin remodeling complex. This complex plays a crucial role in governing gene expression by altering the chromatin and rendering it accessible to transcription machinery. The process of chromatin remodeling by the SWI/SNF complex is dependent on ATP hydrolysis. Within the complex, either SMARCA2 or SMARCA4 serves as the sole component capable of catalyzing ATP hydrolysis and are thereby essential to the activity of the complex. SMARCA4 has been found to be mutated in various cancer types, including non-small cell lung carcinoma, colon adenocarcinoma, bladder, and endometrial cancer. In cancer cells where SMARCA4 is deleted, the functionality of the SWI/SNF complex and cell survival is dependent on the presence of SMARCA2, thereby resulting in synthetic lethality if SMARCA2 is depleted. Utilizing in vitro and in vivo model systems we have discovered potent, selective, and orally bioavailable heterobifunctional degraders targeting SMARCA2. Our lead molecules exhibit potent and selective degradation of SMARCA2 (DC50 &amp;lt; 10 nM) with no impact on SMARCA4 (DC50 &amp;gt; 1000 nM). Furthermore, a striking selective activity in proliferation assays was observed with SMARCA4 deleted cells exhibiting gIC50 ranging from 1 -10 nM and SMARCA4 WT cells &amp;gt; 1000 nM. Oral administration in mice harboring human cancer cell line xenografts revealed dose-dependent and selective in vivo degradation of SMARCA2. Degradation of SMARCA2 led to significant anti-tumor activity in SMARCA4 mutant NSCLC xenograft models. Together, these data demonstrate a foundation for the development of a best-in-class degrader for the treatment of SMARCA4 deleted cancers. Citation Format: Jose C. Clemente, Lal Harikrishnan, Steve Knight, Debangshu Samanta, Zhenwu Li, Rakesh Nagilla, Nathan Kendsersky, Shreyas Joshi, Peter Orth, Matt Tudor, Qiaolin Deng, Clemente Aguilar-Bonavides, Elham Behshad, Zhihua Sui, Corey Strickland, Larry J. Jolivette, Helai P. Mohammad. Discovery of oral SMARCA2 degraders for the treatment of SMARCA4 mutant tumors [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 6051.
Abstract 1318: Targeting multiple myeloma with BCMA-CAR NK cells expressing a GPRC5D-NKG2D bispecific antibody
Authors: Lei Tian, Victoria Chen, Tasha Barr, Zhiyao Li, Yuqing Chen, Jiaying Zhang, Michael A. Caligiuri, Jianhua Yu
Journal: Cancer Research (2024)

Abstract Recently developed therapeutics for multiple myeloma (MM) include targeted therapy, immunomodulatory drugs, and immunotherapy, the latter of which consists of B-cell maturation antigen (BCMA)-CAR cells, bispecific antibodies (BsAbs) to engage T cells. However, challenges including relapse and toxicity still exist. The orphan G protein-coupled receptor, class C group 5 member D (GPRC5D), emerged as a novel target for MM therapy. Therefore, following our established system [Cancer Immunol Res PMID: 29769244; Leukemia, PMID:24067492], we generated a BsAb by fusing anti-GPCR5D single-chain variable fragment (scFv) and an anti-NKG2D scFv (GPRC5D-NKG2D BsAb) in a human IgG4 platform and expressed it from BCMA-CAR and soluble IL15 natural killer (NK) cells (s15.BsAb.BCMA-CAR NK) to address the current known limitations. Our data showed that s15.BsAb.BCMA-CAR NK cells secreted GPRC5D-NKG2D BsAb both in vitro and in vivo. To evaluate the function of GPRC5D- NKG2D BsAb expressed from NK cells in vivo, we treated MM tumor-bearing mice with the purified antibody. The data showed that GPRC5D-NKG2D BsAb demonstrated a significantly better survival effect than saline (P≤0.01). We tested s15.BsAb.BCMA-CAR NK cells for cytotoxicity against a homogenous tumor cell mode (BCMA + GPRC5D + ) and a heterogeneous MM tumor cell model, including 50% BCMA + GPRC5D + , 25% BCMA ─ GPRC5D + , and 25% BCMA + GPRC5D ─ cells. Real-time cell analysis (RTCA) data showed s15.BsAb.BCMA-CAR NK cells killed tumor cells in vitro better than both BCMA-CAR NK cells and empty vector-transduced NK cells in an antigen-dependent manner. To test the efficacy of s15.BsAb.BCMA-CAR NK cells in vivo, we established a heterogeneous MM tumor cell mouse model, by mixing BCMA + GPRC5D + OPM2 cells and BCMA + GPRC5D ─ OPM2 cells at the ratio of 2:1. MM mice were treated with “off-the-shelf” different construct NK cells. The results showed that s15.BsAb.BCMA-CAR NK cells significantly prolonged survival compared to other NK cells(s15.BsAb.BCMA-CAR vs. BCMA-CAR P = 0.0012). Our data demonstrated that this all-in-one, multifaceted modality provides 2 ready-to-use biologics simultaneously, CAR NK cells and BsAb, for MM treatment. Citation Format: Lei Tian, Victoria Chen, Tasha Barr, Zhiyao Li, Yuqing Chen, Jiaying Zhang, Michael A. Caligiuri, Jianhua Yu. Targeting multiple myeloma with BCMA-CAR NK cells expressing a GPRC5D-NKG2D bispecific antibody [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 1318.
Abstract 6951: The role of estrogen-dependent activation of p38 MAPK signaling pathway in inflammatory breast cancer
Authors: Keyla V. Ramirez, Adrian D. Bonilla-González, Jeisac Guzman-Rivera, Esther A. Peterson-Peguero
Journal: Cancer Research (2024)

Abstract Inflammatory breast cancer (IBC) is a rare and aggressive type of breast cancer in which the lymphatic vessels become blocked by cancer cells in the breast tissue. The five-year survival rate for this type of cancer is around 40%, one of the worst among breast cancer. Most IBCs are estrogen receptor (ER) and progesterone receptor (PR) negative and HER2 positive, with some presenting an amplification of HER2 while others are ER, PR, and HER2 negative, formally known as the triple-negative (TNBC) subtype. However, it has been reported that treatment with 17β-Estradiol (E2) of ER-negative IBC and non-IBC cells can exert rapid non-genomic signaling mediated by ERα-36, GPR30, and/or estrogen receptor beta, activating MAPK pathways involved in oncogenic phenotypes. Previous data generated in our lab showed that when cells were treated with estradiol it led to increased phosphorylation levels of p38. However, the specific role p38 MAPK signaling takes on in IBC is unknown. Thus, this study centers on examining the role of estradiol and p38 regulation in the triple-negative IBC cell line model, SUM149PT. We hypothesize that upon estradiol treatment p38 signaling pathway is activated resulting in the over-expression of pro-inflammatory cytokines which regulate pro-tumorigenic phenotypes including the growth and survival of IBC cells. Inflammatory cytokines can promote pro-oncogenic features by promoting cell proliferation, angiogenesis, and immune suppression. We treated SUM149 IBC cells with 10nM of estradiol and measured the levels of human cytokines using a Human Cytokine Antibody Array. In addition, treatment using SB202190, a potent p38 inhibitor, caused a significant decrease in cell viability of several breast cancer cell lines in a dose-dependent manner. Ongoing studies include assessing the effects of p38 inhibition proliferation, invasion, and migration. In summary, a better characterization of the effect of E2 and p38 activation in ER-negative cell lines may provide great insight into novel targeted therapies for IBC. Citation Format: Keyla V. Ramirez, Adrian D. Bonilla-González, Jeisac Guzman-Rivera, Esther A. Peterson-Peguero. The role of estrogen-dependent activation of p38 MAPK signaling pathway in inflammatory breast cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 6951.
Abstract 5513: Sexual differences in the aged melanoma tumor microenvironment dictates metastasis and therapeutic responses
Authors: Yash Chhabra, Mitchell Fane, Sneha Pramod, Laura Hueser, Daniel Zabransky, Vania Wang, Edwin Kumah, Alexis Carey, Elizabeth Harper, Murilo Ramos Rocha, Ashani Weeraratna
Journal: Cancer Research (2024)

Abstract There is documented sex disparity in cutaneous melanoma incidence and mortality, increasing disproportionately with age and in the male sex. However, the underlying mechanisms remain unclear; while biological sex differences and inherent immune response variability have been assessed in tumor cells, the role of the microenvironment surrounding the tumor, contextually in aging, has been overlooked. We find that skin fibroblasts undergo age-mediated changes in their proliferation, senescence, ROS levels and stress response that vary with sex. We find that aged male fibroblasts selectively drive an invasive and slow-cycling phenotype in melanoma cells in vitro by increasing AXL expression. This is also evident in syngeneic mouse models where metastasis is increased in aged male mice. Mechanistically, intrinsic aging in male fibroblasts coupled with elevated ROS promotes EZH2 decline thereby increasing BMP2 secretion, which in turn drives the slower-cycling, highly invasive, and therapy-resistant melanoma cell phenotype, characteristic of the aged male TME. Inhibition of BMP2 activity blocks the emergence of the invasive phenotype and sensitizes melanoma cells to BRAF/MEK inhibition. Our data provides an integrated view of how age and sex of the host contributes to melanoma progression and therapy responses. Bridging this knowledge gap will improve patient stratification and assist in tailoring the therapy to the individual. Citation Format: Yash Chhabra, Mitchell Fane, Sneha Pramod, Laura Hueser, Daniel Zabransky, Vania Wang, Edwin Kumah, Alexis Carey, Elizabeth Harper, Murilo Ramos Rocha, Ashani Weeraratna. Sexual differences in the aged melanoma tumor microenvironment dictates metastasis and therapeutic responses [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 5513.
Abstract 5346: A novel humanized CD16A model to evaluate efficacy of human antibody therapeutics in triggering ADCC
Authors: Xiao Liu, Zhenlan Niu, Ruili Lv, Qingcong Lin, Mari Kuraguchi, Qingqing Xu
Journal: Cancer Research (2024)

Abstract Antibody-dependent cellular cytotoxicity (ADCC) is a mechanism by which immune effector cells engage the Fc portion of antibodies bound to antigen on the surface of another cell, thereby targeting that cell for destruction. In mice, the Fcgr4 receptor is primarily responsible for triggering ADCC, while the FCGR3A receptor (CD16A) mediates this function in human NK cells, which are an attractive target cell type for cancer immunotherapy. Given these differences, we sought to generate humanized CD16A preclinical models to evaluate the efficacy of antibodies in triggering human CD16A-mediated ADCC in vivo. Previously, we established humanized CD16A mice on immunocompetent backgrounds for evaluating efficacy of novel antibodies in preventing growth of syngeneic tumor models. Here, we introduce a novel humanized CD16A mouse on the CB-17-SCID background, in order to inoculate human tumor cells for therapeutic efficacy testing. We confirmed expression of CD16A in human NK cells and monocytes/macrophages, but not granulocytes in the model; expression of murine Fcgr4 was no longer detectable, indicating successful generation of the model. Assessment of leukocyte populations in the humanized model indicated no significant alterations in the percentages of NK cells, dendritic cells, granulocytes, monocytes and macrophages in the spleen or blood of the humanized mice compared with wild-type CB-17 SCID mice. Subsequently, the ability of these mice to grow human tumor cells was evaluated: B-hHep3B-Luc, HC116, K-562, and NCI-N87 tumors were all successfully established. Finally, efficacy of an anti-human CLDN18.2 antibody was evaluated against B-hCLDN18.2 BxPC-3 tumors in the humanized mice, which showed modest anti-tumor efficacy at 30 mg/kg when compared to isotype control-treated mice. In summary, humanized B-hCD16A mice (CB-17-SCID) provide a suitable model for evaluating the ability of antibody candidates to induce ADCC. Citation Format: Xiao Liu, Zhenlan Niu, Ruili Lv, Qingcong Lin, Mari Kuraguchi, Qingqing Xu. A novel humanized CD16A model to evaluate efficacy of human antibody therapeutics in triggering ADCC [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 5346.
Abstract 3951: Timing the development of chemoresistance in relapsed pediatric cancer
Authors: Sasha Blay, Mehdi Layeghifard, Scott Davidson, David Chen, Astra Schwertschkow, Vijay Ramaswamy, Michael Taylor, Elli Papaemmanuil, Anita Villani, David Malkin, Ludmil Alexandrov, Mark Cowley, Adam Shlien
Journal: Cancer Research (2024)

Abstract Survivors of pediatric cancer face lifelong battles with severe morbidities, which includes a significant risk of recurrence. Pre-existing genetic variation within primary tumors may offer certain cell populations an evolutionary advantage, increasing the likelihood that some will be resistant to treatment. But the inherent complexity of the tumor means finding these markers of resistance has yet to be fully explored across childhood cancer. To address this, we developed a pipeline that combines clonal evolution reconstruction with mutational signature extraction at the subclonal level to elucidate changes in mutational processes. Using this pipeline to analyze 1,743 pediatric tumor genomes we found a common pattern of parallel evolution in most pediatric cancers, irrespective of their tissue of origin. Further, we detected therapy-associated mutational signatures linked to specific treatments such as temozolomide, platinum, fluorouracil, and thiopurine in post-treatment tumor subpopulations. Of 235 samples with known treatment exposure, 37.9% displayed one or more treatment-associated signatures. In the context of the phylogenetic tree, we identified specific subpopulations with therapy signatures. In multi-sample cases, resistant subpopulations had ancestors present in primary tumors at the time of diagnosis, suggesting certain subpopulations possessed the ability to withstand chemotherapy-induced pressures from an early stage and then expanded following treatment. Finally, we observed differences in the timing of mutational signatures between antimetabolite and alkylating agent treatments, reflecting the mechanisms of these drugs. Antimetabolite agents showed subclonal mutational signatures occurring in later branches, likely due to dependence on cell cycling. In contrast, alkylating agents displayed signatures in both early and late subpopulations, as they are unaffected by cell cycle state. Thus, investigating mutational signatures at the subclonal level unveils new insights into the clonal dynamics of pediatric cancers and the development of chemoresistance. This research offers valuable insights for identifying pediatric cancer patients at greater risk of recurrence, enabling the development of more effective treatment plans to enhance their quality of life and overall survival rates. Citation Format: Sasha Blay, Mehdi Layeghifard, Scott Davidson, David Chen, Astra Schwertschkow, Vijay Ramaswamy, Michael Taylor, Elli Papaemmanuil, Anita Villani, David Malkin, Ludmil Alexandrov, Mark Cowley, Adam Shlien. Timing the development of chemoresistance in relapsed pediatric cancer [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 3951.
Abstract 5090: Development of HSPG2 targeted glycoengineered antibody-drug conjugates
Authors: Xiaolei Li, Swayam Prabha
Journal: Cancer Research (2024)

Abstract Ovarian cancer is associated with poor outcomes and aggressive behaviors. Although surgical removal of tumors and chemotherapy can initially eradicate cancer, many patients eventually experience relapse with chemotherapy-resistant tumors, resulting in poor long-term outcomes and chemotherapy complications. Antibody-drug conjugates (ADCs) are formed by integrating the tumor specificity provided by antibodies (Ab) and small molecule cytotoxicity drugs and can facilitate highly targeted delivery with minimal toxicity to normal tissues. Our group has identified that the overexpression of a novel target, heparan sulfate proteoglycan 2 (HSPG2), is associated with poor prognosis and survival of high grade serous ovarian cancer (HGSOC) patients. We have developed a monoclonal antibody (AM6) that effectively targets HSPG2-expressing tumors. In this study, we used a novel glycoengineering strategy to introduce artificial azide groups at the N-glycan sites of AM6 without affecting its antigen affinity and intracellular localization. The azide groups were then used for site-specific conjugation of the cleavable dibenzyl cyclooctyne - monomethyl auristatin E (DBCO-PAB-MMAE) linker (drug conjugate) to form an AM6 antibody-drug conjugate (AM6 ADCs). Hydrophobic interaction chromatography (HIC) and liquid chromatography/quadrupole time-of-flight/mass spectrometry (LC/Q-TOF/MS) confirmed the successful conjugation of the DBCO-PAB-MMAE to the AM6. In-vitro cytotoxicity studies of AM6 ADCs in OVCAR8 (high HSPG2 expression) and CAOV3 (regular HSPG2 expression) showed the cell line dependent response with lower IC50 in OVCAR8. These results suggest that the effectiveness of AM6 ADCs is proportional to the HSPG2 expression levels of the cells. Future studies will be aimed at the in-vivo evaluation of optimized antibody-drug conjugates. Citation Format: Xiaolei Li, Swayam Prabha. Development of HSPG2 targeted glycoengineered antibody-drug conjugates [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 5090.
Abstract 7305: Chemoprevention of colorectal cancer: Role of trace minerals in conjunction with calcium
Authors: Isabelle Harber, Shannon McClintock, James Varani, Muhammad N. Aslam
Journal: Cancer Research (2024)

Abstract Background: Colorectal cancer (CRC) is a leading cause of cancer-related deaths worldwide. CRC usually develops from adenomas (CRC precursors) after a long latency period. Prevention is crucial in reducing CRC incidence and progression to cancer. Among several prevention options, calcium has been a widely considered chemo-preventative agent. Aims: Calcium plays a vital role in the regulation of epithelial cell differentiation, which is essential for epithelial growth control. Epidemiological studies have demonstrated that adequate calcium intake is crucial for protection against colonic polyp formation and colorectal cancer. However, recent interventional trials with calcium have had only modest and mixed results, and the question is how to improve efficacy. One potential strategy is to use calcium in combination with additional minerals and trace elements. Results: Our preclinical studies employing monolayer cultures with CRC cell lines and colon organoids cultures from colon polyps have shown that a calcium-rich mineral combination derived from fossilized red algae (Aquamin) is more effective than calcium alone in inducing differentiation, suppressing growth and upregulation of calcium-sensing receptor. When colonic adenomas in culture were subjected to differential proteomic analysis, Aquamin upregulated several proteins involved in proliferation suppression, DNA mismatch repair and inducing differentiation, and apoptosis. Two long-term mouse studies have demonstrated that Aquamin is more effective in suppressing polyp &amp; CRC incidence compared to calcium alone. Based on these findings, we conducted a 90-day FDA-approved trial (a pilot study with ten subjects per arm) comparing the two interventions in human subjects at risk for CRC. Results showed that Aquamin treatment reduced proliferation and increased cell differentiation observed by immunohistochemistry. Proteomic analysis also revealed that the minerals upregulated several proteins related to growth suppression, inducing differentiation and those contributing to cell-cell and cell-matrix adhesion functions and downregulated proteins involved in proliferation and nucleic acid metabolism. Conclusion: These results provide convincing evidence that a multi-mineral combination derived from red algae can provide benefits in preventing CRC that are not seen with calcium alone. Further studies, such as a polyp-prevention trial in human subjects, are warranted to advance these CRC prevention efforts. Citation Format: Isabelle Harber, Shannon McClintock, James Varani, Muhammad N. Aslam. Chemoprevention of colorectal cancer: Role of trace minerals in conjunction with calcium [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2024; Part 1 (Regular Abstracts); 2024 Apr 5-10; San Diego, CA. Philadelphia (PA): AACR; Cancer Res 2024;84(6_Suppl):Abstract nr 7305.