tbuckley/cabot-search huggingface dataset:
Instrument selection for the ASAS core outcome set for axial spondyloarthritis
Authors: Victoria Navarro-Compán, Anne Boel, Annelies Boonen, Philip J Mease, Maxime Dougados, Uta Kiltz, Robert B M Landewé, Xenofon Baraliakos, Wilson Bautista-Molano, Praveena Chiowchanwisawakit, Hanne Dagfinrud, Lara Fallon, Marco Garrido-Cumbrera, Lianne Gensler, Bassel Kamal ElZorkany, Nigil Haroon, Yu Heng Kwan, Pedro M Machado, Walter Maksymowych, Anna Molto, Natasha de Peyrecave, Denis Poddubnyy, Mikhail Protopopov, Sofia Ramiro, In-Ho Song, Salima van Weely, Désirée van der Heijde
Journal: Annals of the Rheumatic Diseases (2022)

Objectives To define the instruments for the Assessment of SpondyloArthritis international Society–Outcomes Measures in Rheumatology (ASAS-OMERACT) core domain set for axial spondyloarthritis (axSpA). Methods An international working group representing key stakeholders selected the core outcome instruments following a predefined process: (1) identifying candidate instruments using a systematic literature review; (2) reducing the list of candidate instruments by the working group, (3) assessing the instruments’ psychometric properties following OMERACT filter 2.2, (4) selection of the core instruments by the working group and (5) voting and endorsement by ASAS. Results The updated core set for axSpA includes seven instruments for the domains that are mandatory for all trials: Ankylosing Spondylitis Disease Activity Score and Numerical Rate Scale (NRS) patient global assessment of disease activity, NRS total back pain, average NRS of duration and severity of morning stiffness, NRS fatigue, Bath Ankylosing Spondylitis Function Index and ASAS Health Index. There are 9 additional instruments considered mandatory for disease-modifying antirheumatic drugs (DMARDs) trials: MRI activity Spondyloarthritis Research Consortium of Canada (SPARCC) sacroiliac joints and SPARCC spine, uveitis, inflammatory bowel disease and psoriasis assessed as recommended by ASAS, 44 swollen joint count, Maastricht Ankylosing Spondylitis Enthesitis Score, dactylitis count and modified Stoke Ankylosing Spondylitis Spinal Score. The imaging outcomes are considered mandatory to be included in at least one trial for a drug tested for properties of DMARD. Furthermore, 11 additional instruments were also endorsed by ASAS, which can be used in axSpA trials on top of the core instruments. Conclusions The selection of the instruments for the ASAS-OMERACT core domain set completes the update of the core outcome set for axSpA, which should be used in all trials.
Abstract 160: IKKα interacts with DARPP-32 to promote lung adenocarcinoma growth
Authors: Sk. Kayum Alam, Li Wang, Zhu Zhu, Luke H. Hoeppner
Journal: Cancer Research (2022)

Abstract Lung cancer is the leading cause of cancer-related death in the U.S. and worldwide. Non-small cell lung cancer (NSCLC) represents 80-85% of all lung cancer diagnoses, most of which present as advanced disease with poor prognoses. Despite existing treatment options, the overall 5-year survival rate of lung cancer patients is about 17%. Many patients are diagnosed with advanced stage disease that frequently progresses after developing resistance to therapy. Therefore, a better understanding of the molecular mechanisms that control NSCLC progression is necessary to develop new therapies to improve the prognoses of patients. We recently demonstrated that dopamine and cyclic AMP-regulated phosphoprotein, Mr 32000 (DARPP-32), and its truncated splice variant, t-DARPP, promote NSCLC growth using functional studies, orthotopic mouse models, and patient-derived specimens. Specifically, we previously reported that DARPP-32 isoforms promote NSCLC cell migration through activation of non-canonical NF-κB2 signaling by establishing a direct physical interaction with inhibitory kappa B kinase-alpha (IKKα). Therefore, we first sought to determine whether IKKα directly phosphorylates DARPP-32. Indeed, we observed that kinase active IKKα protein phosphorylates DARPP-32 protein at the Thr-34 position using in vitro kinase assays. Given that phosphorylated DARPP-32 acts as a potent inhibitor of protein phosphatase 1 (PP1), we assessed PP1 activity upon transient overexpression of IKKα in DARPP-32-overexpressed NSCLC cells. Our findings suggest phosphorylation of DARPP-32 by IKKα results in decreased PP1-mediated phosphatase activity. This DARPP-32-mediated inhibition of PP1 was not observed in NSCLC cells stably overexpressing a form of DARPP-32 that cannot phosphorylated at the Thr-34 residue (via T34A mutation), suggesting IKKα protein phosphorylates DARPP-32 at the Thr-34 position to stimulate DARPP-32-mediated inhibition of PP1 activity. Correspondingly, we have observed increased phosphorylation of ERK protein, a kinase regulated by PP1, upon pharmacological inhibition of PP1 as well as following overexpression of IKKα protein. Ablation of IKKα via lentiviral transduction reduces NSCLC cell growth in soft-agar colony formation assays. Furthermore, using an orthotopic human NSCLC cell line-derived xenograft mouse model, we have shown that depletion of IKKα reduces tumor growth. Taken together, our findings suggest that IKKα contributes to NSCLC growth by interacting with DARPP-32 to stimulate oncogenic kinase activity through the inhibition of PP1 phosphatase activity. Citation Format: Sk. Kayum Alam, Li Wang, Zhu Zhu, Luke H. Hoeppner. IKKα interacts with DARPP-32 to promote lung adenocarcinoma growth [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 160.
Low- and Very Low-Dose Bevacizumab for Retinopathy of Prematurity
Authors: Sharon F. Freedman, Amra Hercinovic, David K. Wallace, Raymond T. Kraker, Zhuokai Li, Amit R. Bhatt, Charline S. Boente, Eric R. Crouch, G. Baker Hubbard, David L. Rogers, Deborah VanderVeen, Michael B. Yang, Nathan L. Cheung, Susan A. Cotter, Jonathan M. Holmes, Sharon F. Freedman, Sasapin G. Prakalapakorn, David K. Wallace, Sarah K. Jones, Navajyoti R. Barman, Robert J. House, David A. Nasrazadani, Eric Crouch, Earl R. Crouch, Gaylord G. Ventura, Michael B. Yang, Eniolami O. Dosunmu, Michael E. Gray, William W. Motley, Katherine Castleberry, Patricia Cobb, Patricia Hirsch, Melissa Reed, Monica A. Sandoval, Neil Vallabh, David L. Rogers, Don.L. Bremer, Richard P. Golden, Catherine O. Jordan, Mary Lou McGregor, Rachel E. Reem, Amanda N. Schreckengost, Sara A. Maletic, Rachel T. Miller, Amit R. Bhatt, David K. Coats, Gihan Romany, Ann B. Demmy, Lingkun X. Kong, Mary E. Hartnett, David C. Dries, Robert O. Hoffman, Susan Allman, Katie J. Farnsworth, Barbara Hart, Kelliann Ordonez, Amy K. Hutchinson, George B. Hubbard, Prethy Rao, Joshua E. Robinson, Judy L. Brower, Kathryn M. Haider, Charline S. Boente, Heather A. Smith, Elizabeth A. Hynes, Michele E. Whitaker, Deborah K. VanderVeen, Jason S. Mantagos, Carolyn Wu, Samantha Goldstein, Tamar Winter, Grace X. Yoon, R. Michael Siatkowski, Janine E. Collinge, Kelli J. Satnes, Michelle H. Blunt, Michael X. Repka, Courtney Kraus, Jennifer A. Shepard, Raymond T. Kraker, Roy W. Beck, Darrell S. Austin, Nicole M. Boyle, Danielle L. Chandler, Patricia L. Connelly, Courtney L. Conner, Quayleen Donahue, Brooke P. Fimbel, Robert J. Henderson, Amra Hercinovic, James E. Hoepner, Joseph D. Kaplon, Zhuokai Li, B. Michele Melia, Gillaine Ortiz, Julianne L. Robinson, Kathleen M. Stutz, Desirae R. Sutherland, David O. Toro, Victoria C. Woodard, Rui Wu, Susan A. Cotter, Jonathan M. Holmes, Eileen E. Birch, Angela M. Chen, Stephen P. Christiansen, Eric R. Crouch, Laura B. Enyedi, S. Ayse Erzurum, Donald F. Everett, William V. Good, Erin C. Jenewein, Katherine A. Lee, Richard London, Vivian M. Manh, Ruth E. Manny, Beth A. Morrell, David G. Morrison, David B. Petersen, Stacy L. Pineles, Hantamalala Ralay Ranaivo, Tawna L. Roberts, Scott T. Ruark, Bonita R. Schweinler, Jayne L. Silver, Donny W. Suh, Allison I. Summers, Lisa C. Verderber, Katherine K. Weise, Marie Diener-West, John D. Baker, Barry Davis, Dale L. Phelps, Stephen W. Poff, Richard A. Saunders, Lawrence Tychsen
Journal: Ophthalmology (2022)
Abstract 6049: Identifying shared features of low-H3K27me3 pediatric brain tumors
Authors: Matthew Pun, Drew Pratt, Sriram Venneti
Journal: Cancer Research (2022)

Abstract Brain tumors have the worse survival rates of all childhood malignancies, and a better understanding of their biology is needed for therapeutic development. Two especially devastating subtypes of pediatric brain tumors—diffuse midline gliomas, H3K27M-mutant (DMGs) and posterior fossa ependymomas, group A (PFAs) are both characterized by a hallmark of global reduction of histone 3 lysine 27 trimethylation, a mark associated with transcriptional repression. DMGs primarily harbor mutations of histone 3 (H3K27M) that inhibit the function of the H3 methyltransferase enhancer of zeste homolog 2 (EZH2)-containing polycomb repressive complex (PRC2). Most PFAs overexpress EZH inhibitory protein (EZHIP), resulting in a similar effect on PRC2 activity. Intriguingly, a small subset of DMGs found to be lacking H3K27M mutations express EZHIP, and a fraction of histological PFAs lacking EZHIP expression harbor H3K27M mutations. Given the highly similar putative driving alterations and epigenetic features in these two tumor types, we undertook a systematic evaluation of the clinical and molecular features of each tumor class to elucidate additional shared features and potential targetable vulnerabilities. We performed detailed analyses of genomic aberrations, gene expression, and epigenomic landscapes to identify key similarities and differences in tumor biology. From preliminary studies, our findings demonstrate similar H3K27me3 landscapes with convergence of residual tri-methylated loci between PFA and DMG tumors. We additionally found shared recurrent copy number gain of the long arm of chromosome 1 (1q) and identified several 1q genes whose expression correlated with survival differences in cohorts of both tumors. Together, these findings better define the commonalities and differences of these highly aggressive, low-H3K27me3 pediatric brain tumors and will provide a framework for understanding which therapeutic strategies may translate from one tumor to the other. Citation Format: Matthew Pun, Drew Pratt, Sriram Venneti. Identifying shared features of low-H3K27me3 pediatric brain tumors [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 6049.
Abstract 2608: Pre-clinical evaluation of small molecule CHK2 inhibitor, ART-122 combined with olaparib in BRCA wild type tumors
Authors: Taegon Baik, Chaeun Park, Young Woo Kang, Danny Joh, Ha-Young Lee, Sojung Park, Supyong Hwang, In Ki Kim, Jong Oh Kim
Journal: Cancer Research (2022)

Abstract Background: PARP inhibitors are widely used for BRCA-mutant cancers, but often tumors become resistant to PARP inhibitors. The resistance develops through various mechanisms, including BRCA1/2 reversion mutation. Several publications have suggested that CHK2 inhibition could help overcome the resistance to PARP inhibitors. We discovered a novel small molecule CHK2 inhibitor, ART-122, and conducted a series of experiments to explore the rationale for combining a PARP inhibitor and ART-122 to treat the BRCA wild-type ovarian and breast tumors. Results: In the LanthaScreen࣪ Kinase assay, ART-122 was shown to have the IC50 values of 0.57 nM and 10.85 nM, for CHK2 and CHK1, respectively. We observed the strong synergy between ART-122 and olaparib in the mouse xenograft model using the MDA-MB-231 cancer cells (BRCA1/2 wild type, triple-negative breast cancer cells). Animals were treated with 50 mg/kg olaparib on days 1-5, 30 mg/kg ART-122 on days 1-2 each week for 3 weeks, or both therapies. The result demonstrated approximately 41% reduction in tumor volume in mice treated with the combination therapy compared to the vehicle group. Animals treated with either of the single-agent therapies showed tumor growth similar to the vehicle group. We did not observe apparent toxicity or significant body weight differences among the animals. Additionally, the synergism between ART-122 and olaparib was confirmed in other cancer cell lines, including several BRCA wild-type and BRCA mutant cells lines such as CaOV3, SK-OV-3, UWB1.289, UWB1.289 with BRCA overexpression, HCC1937, MDA-MB-436, and MCF7. Conclusion: The combination of ART-122 and Olaparib demonstrated a synergistic effect in BRCA wild-type ovarian and breast tumor cell lines. In the mouse xenograft model, the CHK2 inhibitor ART-122 sensitized BRCA1/2 wild-type tumor cells MDA-MB-231 to olaparib treatment. The data provide a strong rationale for the further development of ART-122 as a therapeutic agent. Citation Format: Taegon Baik, Chaeun Park, Young Woo Kang, Danny Joh, Ha-Young Lee, Sojung Park, Supyong Hwang, In Ki Kim, Jong Oh Kim. Pre-clinical evaluation of small molecule CHK2 inhibitor, ART-122 combined with olaparib in BRCA wild type tumors [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 2608.
Abstract 2116: VPS34 inhibitor SB02024 activates cGAS-STING signaling and sensitizes tumors to STING agonist
Authors: Yasmin Yu, Muhammad Z. Noman, Santiago Parpal, Simone C. Kleinendorst, Kristine B. Saether, Andrey Alexeyenko, Jenny Viklund, Martin Andersson, Jessica Martinsson, Katja P. Tamm, Angelo De Milito, Bassam Janji
Journal: Cancer Research (2022)

Abstract Novel approaches to reduce tumor immunosuppression and improve responses to anti-cancer immunotherapies based on immune-checkpoint inhibitors are needed. Emerging evidence demonstrates that autophagy inhibition enhances anti-tumor immunity by tumor cell-intrinsic and extrinsic mechanisms. Recently, we reported that pharmacological inhibition of VPS34 (PIK3C3), a lipid kinase regulating autophagy initiation, decreases tumor growth and improve the efficacy of anti-PD-1/PD-L1 therapy in melanoma and colorectal cancer mouse models. This effect was dependent on increasing T and NK cell infiltration as well as the expression of CCL5 and CXCL10 chemokines in the tumor microenvironment. Here, we explored the signaling mechanisms underlying the chemokine release following treatment with VPS34 inhibitor SB02024. We found that both pharmacological and RNAi-mediated inhibition of VPS34 activated a cGAS-STING-dependent type I interferon response in renal cell carcinoma (RCC) and melanoma cell lines. Furthermore, combination treatment of VPS34 inhibitor SB02024 with STING agonist ADU-S100 or cGAMP increased the mRNA expression and release of proinflammatory cytokines in human and murine RCC and melanoma cancer cell lines. Oral administration of SB02024 in combination with intratumoral injections of ADU-S100 significantly decreased tumor growth and weight and improved mice survival of B16-F10 tumor-bearing mice. Taken together, our data demonstrates that targeting of VPS34 results in a cGAS/STING-mediated increase of pro-inflammatory cytokine secretion and synergizes with a STING agonist. We believe that systemic VPS34 inhibition using SB02024 would be of major interest in combination or as an alternative to STING agonists to improve anti-tumor immune responses. Citation Format: Yasmin Yu, Muhammad Z. Noman, Santiago Parpal, Simone C. Kleinendorst, Kristine B. Saether, Andrey Alexeyenko, Jenny Viklund, Martin Andersson, Jessica Martinsson, Katja P. Tamm, Angelo De Milito, Bassam Janji. VPS34 inhibitor SB02024 activates cGAS-STING signaling and sensitizes tumors to STING agonist [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 2116.
Abstract 2090: Humanized IL36R mice provide a preclinical tool for the evaluation of therapeutic drugs targeting IL36R
Authors: Xiaofei Zhou, Jiahui Chang, Jenna Frame, Chong Li, Zhifang Bai, Yuelei Shen
Journal: Cancer Research (2022)

Abstract The IL36 family of cytokines (IL36a, IL36b, and IL36g) is part of the IL-1 superfamily and triggers proinflammatory signaling through the IL36 receptor complex. This heterodimer complex is formed by the IL36 Receptor (IL1RL2) and IL-1R co-receptor accessory protein (IL-1RAcP). IL36R is present on a diverse variety of cell types, including the surface of dendritic cells, CD4+ T cells, and epithelial cells in various tissues. IL36 signaling can exert widespread inflammation, and its activity is implicated in several inflammatory diseases affecting epithelial tissues, including inflammatory bowel disease, rheumatoid arthritis, and psoriasis. Thus, identification of novel therapeutics targeting this pathway are of significant clinical interest. To provide a preclinical platform for efficacy assessments of novel anti-human IL36R drugs, we generated a humanized hIL36R knock-in mouse model. In this model, a chimeric IL1RL2 coding sequence, which is composed of the human IL1RL2 extracellular region and the mouse Il1rl2 cytoplasmic region, was inserted after the 5’UTR of mouse Il1rl2 gene using CRISPR-Cas9-based gene editing technology. The mouse cytoplasmic region was maintained to ensure intact downstream signaling. Polymerase chain reaction assessment of mRNA isolated from the lung tissue of edited homozygous humanized IL36R mice confirmed the absence of mouse Il1rl2 transcripts. Finally, to confirm the expression of human IL36R protein, immunohistochemistry was performed on the small intestine and skin tissue of humanized mice subjected to a chemical induction of psoriasis. Psoriasis-like symptoms were achieved by application of imiquimod cream on the back skin of the mice for 5 consecutive days. As expected, IL36R protein expression was detected in both tissues isolated from the homozygous humanized mice. These results indicate the successful generation of humanized IL36R mice, and suggest that this model will be an effective tool for future in vivo efficacy evaluation of immunomodulatory drugs targeting human IL36R. Citation Format: Xiaofei Zhou, Jiahui Chang, Jenna Frame, Chong Li, Zhifang Bai, Yuelei Shen. Humanized IL36R mice provide a preclinical tool for the evaluation of therapeutic drugs targeting IL36R [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 2090.
Abstract 1112: Detection ofHMGB1 and extracellular ATP for the assessment of immunogenic cell death
Authors: Richard L. Somberg, Kevin Kupcho, Andrew Niles, James Cali
Journal: Cancer Research (2022)

Abstract Immunogenic cell death (ICD) is a form of apoptosis that kills susceptible populations of cancer cells while teaching the immune system to attack the remaining resistant cells. Chemotherapeutics which induce ICD elicit their immune response by inducing tumor cells to display or release damage-associated molecular patterns (DAMPs). There are two key biomarkers for ICD: 1) during the apoptotic process, tumor cells secrete ATP (extracellular ATP or eATP) and 2) during secondary necrosis, tumor cells release HMGB1 (high mobility group box 1). Because the dying tumor cells display these DAMP molecules, they stimulate the recruitment of dendritic cells (DCs) into the tumor bed and ultimately “teach” cytotoxic T-lymphocytes (CTLs) to respond to these tumor specific antigens. These primed CTLs will then kill additional tumor cells through a direct cytotoxic response. Therefore, therapeutics which provoke an ICD response offer a therapeutically desirable outcome for cancer therapy. Current assay methods such as ELISA assays and flow cytometry for measuring these ICD biomarkers are laborious and involve multiple transfer and wash steps. We have developed homogeneous (no wash), single addition assays for measuring the two principle ICD biomarkers. The eATP assay uses optimized luciferase detection chemistry that is applied directly to live cells to measure ATP release over 24 hours. The HMGB1 assay uses a complementary luciferase fragment-labeled antibody approach to measure protein concentration. We demonstrated the use of these two assays with model systems for inducing Immunogenic Cell Death with human and murine cell lines including U2OS, EL4, and U937 cells. The potency and response magnitude of ICD-inducing compounds including doxorubicin, idarubicin and mitoxantrone differs depending on the model cell line used. Further, the timing of extracellular ATP release and HMGB1 release differs between cell lines and inducers. Improved assays to measure two markers of Immunogenic Cell Death will expedite the discovery and development of inducers of Immunogenic Cell Death, including small molecule therapeutics, oncolytic viruses, radiation therapy and other novel therapeutics, by streamlining the workflow, increasing sample throughput and providing real time live cell data. Citation Format: Richard L. Somberg, Kevin Kupcho, Andrew Niles, James Cali. Detection ofHMGB1 and extracellular ATP for the assessment of immunogenic cell death [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 1112.
Abstract 1652: A humanized mouse model of the promising immune checkpoint molecule B7-H4
Authors: Ruili Lyu, Chonghui Liu, John Charpentier, Suman Zhao, Luke (Zhaoxue) Yu
Journal: Cancer Research (2022)

Abstract B7-H4, a member of the B7-family of immune-regulatory ligands, has emerged in recent years as a promising target for immune checkpoint therapy development. B7-family ligands bind via extracellular tandem immunoglobulin-like domains to CD28-family receptors on lymphocytes to communicate co-stimulatory or co-inhibitory signals. B7-H4 remains an orphan ligand, although evidence from knockout mice suggests a co-inhibitory role and its expression on cancer cells and tumor-associated macrophages is associated with inhibition of proliferation, cell cycle progression, and cytokine secretion in T cells. B7-H4 is highly expressed in a variety of tumors (e.g., renal, gastric, breast, and ovarian carcinomas) and plays less well-appreciated roles in autoimmune diseases, viral infections, and maternal-fetal immunity. Negative regulation of T cell responses by B7-H4 has also been shown to induce tolerance of islet allografts in mouse models of Type I diabetes. A range of B7-H4-targeted immunotherapy agents have been successfully developed, including monoclonal antibodies, antibody-drug conjugates, B7-H4/CD3-targeting bispecific antibodies, and B7-H4-specific CAR-T cells. To evaluate the efficacy of a B7-H4 antibody, Biocytogen generated humanized B-hB7-H4 mice. Our targeting strategy was to replace the murine B7-H4 extracellular domain sequences with their corresponding human sequences. We verified mRNA and protein expression of human B7-H4 in the humanized B-hB7-H4 mice by RT-PCR and Western Blot, respectively. An in vivo efficacy study demonstrated that B7-H4 antibodies significantly inhibited tumor growth in B-hB7-H4 mice bearing tumors derived from the B16-F10 murine melanoma line. These data confirm that the B-hB7-H4 humanized mouse model is a powerful tool for evaluating the preclinical potential of B7-H4-targeting immune-therapeutics. Keywords: Humanized mice, B7-H4, Immunotherapy Citation Format: Ruili Lyu, Chonghui Liu, John Charpentier, Suman Zhao, Luke (Zhaoxue) Yu. A humanized mouse model of the promising immune checkpoint molecule B7-H4 [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2022; 2022 Apr 8-13. Philadelphia (PA): AACR; Cancer Res 2022;82(12_Suppl):Abstract nr 1652.