Abstract PD10-02: The influence of pathogenic variants in breast cancer predisposition genes on secondary breast cancer events in a prospectively collected cohort of breast cancer patients
Authors: Judy C. Boughey, Tanya L. Hoskin, Siddhartha Yadav, Fergus J. Couch
Journal: Cancer Research (2021)

Abstract Background: About 10-20% of breast cancers (BC) are hereditary. Patients (pts) with BC and pathogenic variants (PVs) in the BRCA1 or BRCA2 gene are at increased risk of contralateral breast cancer (CBC). However, risks of CBC and recurrent BC associated with PVs in other established BC predisposition genes (e.g. PALB2, CHEK2, ATM) are less well established. We performed research genetic testing of over 4000 pts with BC treated at Mayo Clinic. Because most pts were unaware of their mutation status prior to selection of therapy, this cohort provides a unique opportunity to evaluate the natural history of BC recurrence after treatment of the index BC in pts with a deleterious mutation in predisposition genes. Methods: Women diagnosed and treated for BC at Mayo Clinic between 2001-2016 were enrolled in an IRB-approved research cohort. Pts were not selected for age of diagnosis or family history. Coding regions and consensus splice sites of established BC predisposition genes were subjected to amplicon-based deep sequencing using the QIAseq method in germline DNA extracted from peripheral blood or buccal samples. PVs in the genes were identified using GATK haplotype caller and Vardict. Patient, tumor, oncologic management and follow up data were reviewed. Herein we report on the differences in the incidence of local recurrence and CBC, among carriers and non- carriers and by predisposition gene using the cumulative incidence estimator and Fine and Gray regression to account for competing risks. Results: Of 4272 women with BC (median age 57, range 21-94), a PV in a BC predisposition gene was identified in 287 (6.7%). The most common PVs were seen in CHEK2 (67, 1.6%), BRCA1 (62, 1.5%), BRCA2 (60, 1.4%), ATM (47, 1.1%); 8 (0.2%) patients had more than one PV. Pts with any PVs presented at younger age (median 51 vs 58 years, p&amp;lt;0.001), were more likely to have stage IV disease (4.5% vs 2.3%, p=0.02), estrogen receptor (ER) negative BC (19.5% vs 13.5%, p=0.005), and bilateral cancer (8.8% vs 4.3%, p&amp;lt;0.001). ER- BC proportion varied by gene - 38.9% in pts with PVs associated with ER- BC (BRCA1, BARD1, BRIP1, RAD51C, RAD51D) and 11.9% in those with PVs associated with ER+ BC (BRCA2, ATM, CDH1, CHEK2), p&amp;lt;0.001. NCCN criteria for genetic testing were assessed for 3763, with 69.9% of those with PVs qualifying for testing compared to 46.3% of those without PVs (p&amp;lt;0.001). Among 3973 pts (249 with PVs, 3724 without) with unilateral stage 0-III cancer, 168 pts developed local recurrence, 131 pts developed CBC and 248 pts developed distant disease with median 5 years of follow-up. Patients with any PV had higher rates of local recurrence after breast conserving surgery (HR 2.3, 95% CI: 1.2-4.2, p=0.01) but overall did not have significantly higher risk of CBC if contralateral prophylactic mastectomy was not performed (HR 1.7, 95% CI: 0.9-3.2, p=0.11). Specifically, pts with PVs in genes other than BRCA1 or BRCA2 did not have a higher risk of CBC compared to pts with no PV (HR 1.0, 95% CI: 0.4-2.7, p=0.96); the comparison of CBC risk in BRCA1 or BRCA2 versus those with no PV was HR 2.9 (95% CI: 1.3-6.5, p=0.01), while BRCA1 or BRCA2 compared to those with other PVs was HR 2.7 (95% CI: 0.8-9.3, p=0.13). In pts with CHEK2 PVs, the probability of CBC at 10-years follow-up was 5.4%, which was similar to pts without a mutation (5.3%), p=0.47. Conclusion: While PVs in known BC predisposition genes increase risk of BC development, risk of CBC in carriers of PVs in non-BRCA predisposition genes with BC are not as high as seen with BRCA1 or 2 PV carriers. This information regarding future BC will be helpful in personalizing decisions on the extent of surgery in carriers of PVs in BC predisposition genes. Citation Format: Judy C. Boughey, Tanya L. Hoskin, Siddhartha Yadav, Fergus J. Couch. The influence of pathogenic variants in breast cancer predisposition genes on secondary breast cancer events in a prospectively collected cohort of breast cancer patients [abstract]. In: Proceedings of the 2020 San Antonio Breast Cancer Virtual Symposium; 2020 Dec 8-11; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2021;81(4 Suppl):Abstract nr PD10-02.