Near-patient SARS-CoV-2 molecular platforms: new-old tools for new-old problems
Authors: Luke S P Moore
Journal: The Lancet Respiratory Medicine (2020)

Testing for severe acute respiratory syndrome coronavirus 2 (SARS-COV-2) remains a global issue of capacity, accuracy, and access. In their prospective, interventional, non-randomised, controlled trial published in The Lancet Respiratory Medicine, Nathan Brendish and colleagues1Brendish NJ Poole S Naidu VV et al.Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study.Lancet Respir Med. 2020; (published online Oct 8, 2020.)https://doi.org/10.1016/S2213-2600(20)30454-9Summary Full Text Full Text PDF PubMed Scopus (86) Google Scholar move COVID-19 diagnostics forward, both by expanding the repertoire of in-situ evaluated molecular platforms, and also methodologically, with a diagnostic controlled trial using clinical impact as a primary outcome measure, analogous to their previous work on other respiratory viruses.2Brendish NJ Malachira AK Armstrong L et al.Routine molecular point-of-care testing for respiratory viruses in adults presenting to hospital with acute respiratory illness (ResPOC): a pragmatic, open-label, randomised controlled trial.Lancet Respir Med. 2017; 5: 401-411Summary Full Text Full Text PDF PubMed Scopus (212) Google Scholar As health-care providers and public health organisations continue to struggle with COVID-19 case finding, repurposing existing molecular platforms for this new pathogen, and revising historical laboratory centralisation towards point-of-care syndromic testing could provide some solutions. In terms of test performance characteristics, Brendish and colleagues1Brendish NJ Poole S Naidu VV et al.Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study.Lancet Respir Med. 2020; (published online Oct 8, 2020.)https://doi.org/10.1016/S2213-2600(20)30454-9Summary Full Text Full Text PDF PubMed Scopus (86) Google Scholar show that the point-of-care QIAstat-Dx Respiratory SARS-CoV-2 Panel functions well. In their UK-based single-centre study, 499 patients were tested with the point-of-care system, placed in an acute medicine unit, while 555 patients (control group) were tested by PCR done an on-site Public Health England laboratory. Time to results, the primary outcome, was considerably faster in the point-of-care testing group (median 1·7 h [IQR 1·6–1·9]) than in the control group (21·3 h [16·0–27·9]; difference 19·6 h [95% CI 19·0–20·3], p<0·0001), with a hazard ratio of 4023 (95% CI 545–29 696) after controlling for age, sex, time of presentation, and severity of illness. The QIAstat-Dx Respiratory SARS-CoV-2 Panel also had high accuracy, with sensitivity of 99·4% (95% CI 96·9–100) and specificity of 98·6% (96·5–99·6), albeit evaluated against a reference standard that the authors describe as very poor.1Brendish NJ Poole S Naidu VV et al.Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study.Lancet Respir Med. 2020; (published online Oct 8, 2020.)https://doi.org/10.1016/S2213-2600(20)30454-9Summary Full Text Full Text PDF PubMed Scopus (86) Google Scholar Nevertheless, this level of accuracy is attractive in the context of the recently published (yet perhaps already outdated) Cochrane review3Dinnes J Deeks JJ Adriano A et al.Rapid, point-of-care antigen and molecular-based tests for diagnosis of SARS-CoV-2 infection.Cochrane Database Syst Rev. 2020; 8CD013705PubMed Google Scholar of early-to-market, rapid, point-of-care molecular tests for SARS-CoV-2, which looked at 13 evaluations of four platforms, finding a mean sensitivity of 95·2% (86·7–98·3) with a specificity of 98·9% (97·3–99·5). More recent additions, including the SAMBA24Collier DA Assennato SM Warne B et al.Point of care nucleic acid testing for SARS-CoV-2 in hospitalized patients: a clinical validation trial and implementation study.Cell Rep Med. 2020; 1100062Summary Full Text Full Text PDF PubMed Scopus (35) Google Scholar (sensitivity 96·9% [83·8–99·9], specificity 99·1% [95·3–99·9]), bioFire5Liotti FM Menchinelli G Marchetti S et al.Evaluating the newly developed BioFire COVID-19 test for SARS-CoV-2 molecular detection.Clin Microbiol Infect. 2020; (https://dx.doi.org/10.1016%2Fj.cmi.2020.07.026 published online July 28.)Summary Full Text Full Text PDF Scopus (19) Google Scholar (sensitivity 93·0% [85·4–97·4], specificity 100·0% 89·7–100·0]), and dnaNudge6Gibani MM Toumazou C Sohbati M et al.Assessing a novel, lab-free, point-of-care test for SARS-CoV-2 (CovidNudge): a diagnostic accuracy study.Lancet Microbe. 2020; (published online Sept 17.)https://doi.org/10.1016/S2666-5247(20)30121-XSummary Full Text Full Text PDF PubMed Scopus (79) Google Scholar (sensitivity 94% [86–98], specificity 100% [99–100]) broaden the number of available platforms further. It must be emphasised, however, that these platforms used a variety of gold standards, and reporting of result concordance might be more appropriate than sensitivity and specificity. Furthermore, these platforms vary in the degree of hands-on time and operator skill needed, and some are perhaps only borderline appropriate for deployment at the point of care. Brendish and colleagues also showed that the fast turnaround time of the QIAstat-Dx Respiratory SARS-CoV-2 Panel decreased the time taken for patients to be placed in an appropriate care area, and led to fewer bed moves and faster time to enrolment into other COVID-19 clinical trials—all significant advantages. However, as we consider how to best leverage this and other platforms, we should be cognisant of the lessons learnt through the deployment of point-of-care or near-patient assays in other emergent infectious diseases settings7Pollock NR Wonderly B Evaluating novel diagnostics in an outbreak setting: lessons learned from Ebola.J Clin Microbiol. 2017; 55: 1255-1261Crossref PubMed Scopus (11) Google Scholar and for other respiratory viruses.2Brendish NJ Malachira AK Armstrong L et al.Routine molecular point-of-care testing for respiratory viruses in adults presenting to hospital with acute respiratory illness (ResPOC): a pragmatic, open-label, randomised controlled trial.Lancet Respir Med. 2017; 5: 401-411Summary Full Text Full Text PDF PubMed Scopus (212) Google Scholar Unless point-of-care infrastructure is developed to underpin point-of-care molecular platforms, including sample adequacy controls, robust internal and external quality assurance, information technology connectivity, training, and use governance, then widespread deployment might be compromised. Finally, as highlighted in a perspective from Shuren and Stenzel from the US Food and Drug administration,8Shuren J Stenzel T Covid-19 molecular diagnostic testing—lessons learned.N Engl J Med. 2020; (published online Sept 9.)https://doi.org/10.1056/nejmp2023830Crossref PubMed Scopus (30) Google Scholar in learning lessons around diagnostics from this pandemic, beyond ensuring the technical aspects of molecular assays, we must improve clinicians' and policy makers' understanding of test selection, performance, and how results should be interpreted and integrated into care pathways. Globally, the COVID-19 pandemic has exposed inequitable diagnostic capacity, a key issue being reviewed by the Lancet Commission, formed a year ago, explicitly to look at equitable access to diagnostics.9Wilson ML Atun R DeStigter K et al.The Lancet Commission on diagnostics: advancing equitable access to diagnostics.Lancet. 2019; 393: 2018-2020Summary Full Text Full Text PDF PubMed Scopus (22) Google Scholar It would, therefore, behove the global response to the pandemic if the development and evaluation of molecular tests enabled deployment in a variety of settings, including those without robust laboratory infrastructure. Whether the platform evaluated by Brendish and colleagues,1Brendish NJ Poole S Naidu VV et al.Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study.Lancet Respir Med. 2020; (published online Oct 8, 2020.)https://doi.org/10.1016/S2213-2600(20)30454-9Summary Full Text Full Text PDF PubMed Scopus (86) Google Scholar or indeed any of the rapid near-patient SARS-CoV-2 platforms, might fit this bill remains to be seen. Developing clear reporting criteria for rapid point-of-care diagnostic trials that can be compared across different health-care infrastructure settings and between platforms would seem appropriate, and the metrics used by Brendish and colleagues1Brendish NJ Poole S Naidu VV et al.Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study.Lancet Respir Med. 2020; (published online Oct 8, 2020.)https://doi.org/10.1016/S2213-2600(20)30454-9Summary Full Text Full Text PDF PubMed Scopus (86) Google Scholar are certainly among those which should be considered. When considering each new SARS-CoV-2 diagnostic evaluation, we should consider that, although the gene targets for the SARS-CoV-2 molecular platforms are new, the technologies we are adapting to seek these targets are, on the whole, well established. Additionally, whereas the need to rapidly identify patients with COVID-19 is a huge and new stressor on health-care provision and public health measures, the need to safely manage clinical care while minimising the potential for communicable disease transmission is an old problem. Independent, prospective, controlled, in-situ evaluations of respiratory virus diagnostics, such as that by Brendish and colleagues,1Brendish NJ Poole S Naidu VV et al.Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled study.Lancet Respir Med. 2020; (published online Oct 8, 2020.)https://doi.org/10.1016/S2213-2600(20)30454-9Summary Full Text Full Text PDF PubMed Scopus (86) Google Scholar are essential. However, we need to push even further for clear analyses of implementation and impact to best understand and leverage the value added from point-of-care platforms during this pandemic and beyond. LSPM has consulted for bioMerieux, DNAelectronics, Dairy Crest, Pfizer, and Umovis Lab; received speaker fees from Profile Pharma; and received research grants from the National Institute for Health Research (NIHR) and CW+ Charity. The views expressed in this publication are those of the authors and not necessarily those of the National Health Service, the National Institute for Health Research, or the UK Department of Health. Clinical impact of molecular point-of-care testing for suspected COVID-19 in hospital (COV-19POC): a prospective, interventional, non-randomised, controlled studyPoint-of-care testing is associated with large reductions in time to results and could lead to improvements in infection control measures and patient flow compared with centralised laboratory PCR testing. Full-Text PDF