HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species
Forming a new species through the merger of two or more divergent parent species is increasingly seen as a key phenomenon in the evolution of many biological systems. However, little is known about how expression of parental gene copies (homeologs) responds following genome merger. High throughput RNA sequencing now makes this analysis technically feasible, but tools to determine homeolog expression are still in their infancy.
hybrid allopolyploid homeolog rna-seq read assignment