sunny2309/githug-issues huggingface dataset:
xcsr: X-CSQA simply uses english for all alleged non-english data

## Describe the bug
All the alleged non-english subcollections for the X-CSQA task in the [xcsr benchmark dataset ](https://huggingface.co/datasets/xcsr) seem to be copies of the english subcollection, rather than translations. This is in contrast to the data description:

> we automatically translate the original CSQA and CODAH datasets, which only have English versions, to 15 other languages, forming development and test sets for studying X-CSR
 
## Steps to reproduce the bug
```python
# let's say you want to load the french X-CSQA subcollection
french = datasets.load_dataset("xcsr", "X-CSQA-fr")
# for good measure, let's load english too
english = datasets.load_dataset("xcsr", "X-CSQA-en")

# let's inspect
"".join(english['test'][0]['question']['stem'])
# output: 'The people wanted to stop the parade, so what did they set up to thwart it?'
"".join(french['test'][0]['question']['stem'])
# output: 'The people wanted to stop the parade, so what did they set up to thwart it?'
# what? Why are they both in english?

# I've checked this for validation and train splits too, across many datapoints. It's all the same english dataset
# maybe i need to look better?
french['test'].unique('lang')
# output: ['en']
# no, it's all english

```

## Expected results
Accessing a subcollection in language X should return a subcollection containg samples in language X

## Actual results
Accessing a subcollection in language X returns a subcollection containing samples in English.

## Environment info
<!-- You can run the command `datasets-cli env` and copy-and-paste its output below. -->

- `datasets` version: 2.5.1
- Platform: macOS-10.15.7-x86_64-i386-64bit
- Python version: 3.8.13
- PyArrow version: 9.0.0
- Pandas version: 1.4.3
Fix tar extraction vuln

Fix for CVE-2007-4559

Description:
Directory traversal vulnerability in the (1) extract and (2) extractall functions in the tarfile
module in Python allows user-assisted remote attackers to overwrite arbitrary files via a .. (dot dot)
sequence in filenames in a TAR archive, a related issue to CVE-2001-1267.

I fixed it by using the solution proposed in https://stackoverflow.com/questions/10060069/safely-extract-zip-or-tar-using-python

It blocks extraction of files with an absolute path or double dots and symlinks.
Transfer dataset scripts to Hub

Before merging:
- #4974 

TODO:
- [x] Create label: ["dataset contribution"](https://github.com/huggingface/datasets/pulls?q=label%3A%22dataset+contribution%22)
- [x] Create project: [Datasets: Transfer datasets to Hub](https://github.com/orgs/huggingface/projects/22/)
- [x] PRs:
  - [x] Add dataset: we should recommend transfer all additions of datasets to the Hub, under the appropriate namespace; no more additions of datasets on GitHub
  - [x] Update dataset: in general, we should merge bug fixes; enhancements should be considered on a case-by-case basis, depending on whether there is a more suitable namespace on the Hub
- [ ] Issues

Finally:
- [x] #4974

Let me know what you think! :hugs:
Force JSON format regardless of file naming on S3

I have a file on S3 created by Data Version Control, it looks like `s3://dvc/ac/badff5b134382a0f25248f1b45d7b2` but contains a json file. If I run 
```python
dataset = load_dataset(
    "json",
    data_files='s3://dvc/ac/badff5b134382a0f25248f1b45d7b2' 
)
```
It gives me 
```
InvalidSchema: No connection adapters were found for 's3://dvc/ac/badff5b134382a0f25248f1b45d7b2'
```
However, I cannot go ahead and change the names of the s3 file. Is there a way to "force" load a S3 url with certain decoder (JSON, CSV, etc.) regardless of s3 URL naming?
Release 2.5.0 breaks transformers CI

## Describe the bug
As reported by @lhoestq:

> see https://app.circleci.com/pipelines/github/huggingface/transformers/47634/workflows/b491886b-e66e-4edb-af96-8b459e72aa25/jobs/564563
this is used here: [https://github.com/huggingface/transformers/blob/3b19c0317b6909e2d7f11b5053895ac55[…]torch/speech-pretraining/run_wav2vec2_pretraining_no_trainer.py](https://github.com/huggingface/transformers/blob/3b19c0317b6909e2d7f11b5053895ac55250e7da/examples/pytorch/speech-pretraining/run_wav2vec2_pretraining_no_trainer.py#L482-L488)
Add EmptyDatasetError

examples:

from the hub:
```python
Traceback (most recent call last):
  File "playground/ttest.py", line 3, in <module>
    print(load_dataset("lhoestq/empty"))
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 1686, in load_dataset
    **config_kwargs,
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 1458, in load_dataset_builder
    data_files=data_files,
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 1171, in dataset_module_factory
    raise e1 from None
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 1162, in dataset_module_factory
    download_mode=download_mode,
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 760, in get_module
    else get_data_patterns_in_dataset_repository(hfh_dataset_info, self.data_dir)
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/data_files.py", line 678, in get_data_patterns_in_dataset_repository
    ) from None
datasets.data_files.EmptyDatasetError: The dataset repository at 'lhoestq/empty' doesn't contain any data file.
```

from local directory:
```python
Traceback (most recent call last):
  File "playground/ttest.py", line 3, in <module>
    print(load_dataset("playground/empty"))
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 1686, in load_dataset
    **config_kwargs,
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 1458, in load_dataset_builder
    data_files=data_files,
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 1107, in dataset_module_factory
    path, data_dir=data_dir, data_files=data_files, download_mode=download_mode
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/load.py", line 625, in get_module
    else get_data_patterns_locally(base_path)
  File "/Users/quentinlhoest/Desktop/hf/nlp/src/datasets/data_files.py", line 460, in get_data_patterns_locally
    raise EmptyDatasetError(f"The directory at {base_path} doesn't contain any data file") from None
datasets.data_files.EmptyDatasetError: The directory at playground/empty doesn't contain any data file
```

Close https://github.com/huggingface/datasets/issues/4995
Add support for parsing JSON files in array form

Support parsing JSON files in the array form (top-level object is an array). For simplicity, `json.load` is used for decoding. This means the entire file is loaded into memory. If requested, we can optimize this by introducing a param similar to `lines` in [`pandas.read_json`](https://pandas.pydata.org/docs/reference/api/pandas.read_json.html), which, if set to `True`, would allow us to read in chunks.

Fixes https://github.com/huggingface/datasets/issues/4963
Dataset Viewer issue for Jean-Baptiste/wikiner_fr

### Link

https://huggingface.co/datasets/Jean-Baptiste/wikiner_fr

### Description

```
Error code:   StreamingRowsError
Exception:    FileNotFoundError
Message:      [Errno 2] No such file or directory: 'zip:/data/train::https:/huggingface.co/datasets/Jean-Baptiste/wikiner_fr/resolve/main/data.zip/state.json'
Traceback:    Traceback (most recent call last):
               File "/src/services/worker/src/worker/responses/first_rows.py", line 337, in get_first_rows_response
                 rows = get_rows(dataset, config, split, streaming=True, rows_max_number=rows_max_number, hf_token=hf_token)
               File "/src/services/worker/src/worker/utils.py", line 123, in decorator
                 return func(*args, **kwargs)
               File "/src/services/worker/src/worker/responses/first_rows.py", line 77, in get_rows
                 rows_plus_one = list(itertools.islice(ds, rows_max_number + 1))
               File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 718, in __iter__
                 for key, example in self._iter():
               File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 708, in _iter
                 yield from ex_iterable
               File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/iterable_dataset.py", line 112, in __iter__
                 yield from self.generate_examples_fn(**self.kwargs)
               File "/tmp/modules-cache/datasets_modules/datasets/Jean-Baptiste--wikiner_fr/683a580ba6ec769d508f7dfc603a651667b0ed3817b1ae5bfd45f97cc024923f/wikiner_fr.py", line 165, in _generate_examples
                 dataset = Dataset.load_from_disk(filepath)
               File "/src/services/worker/.venv/lib/python3.9/site-packages/datasets/arrow_dataset.py", line 1210, in load_from_disk
                 with open(Path(dataset_path, config.DATASET_STATE_JSON_FILENAME).as_posix(), encoding="utf-8") as state_file:
             FileNotFoundError: [Errno 2] No such file or directory: 'zip:/data/train::https:/huggingface.co/datasets/Jean-Baptiste/wikiner_fr/resolve/main/data.zip/state.json'
```

Is it an error with the dataset script, or the data itself, @huggingface/datasets?

https://huggingface.co/datasets/Jean-Baptiste/wikiner_fr/tree/main 

### Owner

No
Fix missing tags in dataset cards

Fix missing tags in dataset cards:
- aeslc
- empathetic_dialogues
- event2Mind
- gap
- iwslt2017
- newsgroup
- qa4mre
- scicite

This PR partially fixes the missing tags in dataset cards. Subsequent PRs will follow to complete this task.

Related to:
- #4833
- #4891
- #4896
- #4908
- #4921
- #4931
- #4979
"no-token" is passed to `huggingface_hub` when token is `None`

## Describe the bug

In the 2 lines listed below, a token is passed to `huggingface_hub` to get information from a dataset. If no token is provided, a "no-token" string is passed. What is the purpose of it ? If no real, I would prefer if the `None` value could be sent directly to be handle by `huggingface_hub`. I feel that here it is working because we assume the token will never be validated.

https://github.com/huggingface/datasets/blob/5b23f58535f14cc4dd7649485bce1ccc836e7bca/src/datasets/load.py#L753
https://github.com/huggingface/datasets/blob/5b23f58535f14cc4dd7649485bce1ccc836e7bca/src/datasets/load.py#L1121

## Expected results
Pass `token=None` to `huggingface_hub`.

## Actual results
`token="no-token"` is passed.

## Environment info
`huggingface_hub v0.10.0dev`
Running add_column() seems to corrupt existing sequence-type column info

I have a dataset that contains a column ("foo") that is a sequence type of length 4. So when I run .to_pandas() on it, the resulting dataframe correctly contains 4 columns - foo_0, foo_1, foo_2, foo_3. So the 1st row of the dataframe might look like:

ds = load_dataset(...)
df = ds.to_pandas()

df:
foo_0 | foo_1 | foo_2 | foo_3
0.0 | 1.0 | 2.0 | 3.0

If I run .add_column("new_col", data) on the dataset, and then .to_pandas() on the resulting new dataset, the resulting dataframe contains only 2 columns - foo, new_col. The values in column foo are lists of length 4, the 4 elements that should have been split into separate columns. Dataframe 1st row would be:

ds = load_dataset(...)
new_ds = ds.add_column("new_col", data)
df = new_ds.to_pandas()

df:
foo | new_col
[0.0, 1.0, 2.0, 3.0] | new_val

I've explored the 2 datasets in a debugger and haven't noticed any changes to any attributes related to the foo column, but I can't determine why the dataframes are so different.
[doc] Fix broken snippet that had too many quotes

Hello!

### Pull request overview
* Fix broken snippet in https://huggingface.co/docs/datasets/main/en/process that has too many quotes

### Details
The snippet in question can be found here: https://huggingface.co/docs/datasets/main/en/process#map
This screenshot shows the issue, there is a quote too many, causing the snippet to be colored incorrectly:
![image](https://user-images.githubusercontent.com/37621491/190640627-f7587362-0e44-4464-a5d1-a0b98df6986f.png)

The change speaks for itself.

Thank you for the detailed documentation, by the way. 

- Tom Aarsen
docs: ✏️ add links to the Datasets API

I added some links to the Datasets API in the docs. See https://github.com/huggingface/datasets-server/pull/566 for a companion PR in the datasets-server. The idea is to improve the discovery of the API through the docs.

I'm a bit shy about pasting a lot of links to the API in the docs, so it's minimal for now. I'm interested in ideas to integrate the API better in these docs without being too much. cc @lhoestq @julien-c @albertvillanova @stevhliu.
How to convert  torch.utils.data.Dataset to huggingface dataset?

I look through the huggingface dataset docs, and it seems that there is no offical support function to  convert  `torch.utils.data.Dataset`  to huggingface dataset. However, there is a way to convert huggingface dataset to  `torch.utils.data.Dataset`, like below:
```python
from datasets import Dataset
data = [[1, 2],[3, 4]]
ds = Dataset.from_dict({"data": data})
ds = ds.with_format("torch")
ds[0]
ds[:2]
```
So is there something I miss, or there IS no function to convert  `torch.utils.data.Dataset` to huggingface dataset. If so, is there any way to do this convert?
Thanks.
Fix missing tags in dataset cards

Fix missing tags in dataset cards:
- amazon_us_reviews
- art
- discofuse
- indic_glue
- ubuntu_dialogs_corpus

This PR partially fixes the missing tags in dataset cards. Subsequent PRs will follow to complete this task.

Related to:
- #4833
- #4891
- #4896
- #4908
- #4921
- #4931
Providing dataset size

**Is your feature request related to a problem? Please describe.**
Especially for big datasets like [LAION](https://huggingface.co/datasets/laion/laion2B-en/), it's hard to know exactly the downloaded size (because there are many files and you don't have their exact size when downloaded).

**Describe the solution you'd like**
Auto-populating the downloaded dataset size on the dataset page would be really useful, including that of each split (when there are some).

**Describe alternatives you've considered**
People should be adding this to dataset cards, but I don't think that is systematically the case :slightly_smiling_face: 

**Additional context**
Mentioned to @lhoestq
Hope to adapt Python3.9 as soon as possible

**Is your feature request related to a problem? Please describe.**
A clear and concise description of what the problem is.

**Describe the solution you'd like**
A clear and concise description of what you want to happen.

**Describe alternatives you've considered**
A clear and concise description of any alternative solutions or features you've considered.

**Additional context**
Add any other context about the feature request here.
Preserve non-`input_colums` in `Dataset.map` if `input_columns` are specified

Currently, if the `input_columns` list in `Dataset.map` is specified, the columns not in that list are dropped after the `map` transform.

This makes the behavior inconsistent with `IterableDataset.map`.
 
(It seems this issue was introduced by mistake in https://github.com/huggingface/datasets/pull/2246) 

Fix https://github.com/huggingface/datasets/issues/4858
Column of arrays (2D+) are using unreasonably high memory

## Describe the bug
When trying to store `Array2D, Array3D, etc` as column values in a dataset, accessing that column (or creating depending on how you create it, see code below) will cause more than 10 fold of memory usage.

## Steps to reproduce the bug
```python
from datasets import Dataset, Features, Array2D, Array3D
import numpy as np

column_name = "a"
array_shape = (64, 64, 3)

data = np.random.random((10000,) + array_shape)
dataset = Dataset.from_dict({column_name: data}, features=Features({column_name: Array3D(shape=array_shape, dtype="float64")}))
```

the code above will use about 10Gb of RAM while constructing the `dataset` object.

The code below will use roughly the same amount of memory (and time) when trying to actually access the data itself of that column.
```python
from datasets import Dataset
import numpy as np

column_name = "a"
array_shape = (64, 64, 3)

data = np.random.random((10000,) + array_shape)
dataset = Dataset.from_dict({column_name: data})
dataset[column_name]
```

## Expected results
Some memory overhead, but not like as it is now and certainly not an overhead of such runtime that is currently happening.

## Actual results
Enormous memory- and runtime overhead.

## Environment info
- `datasets` version: 2.3.2
- Platform: macOS-12.5.1-arm64-arm-64bit
- Python version: 3.8.13
- PyArrow version: 9.0.0
- Pandas version: 1.4.4
Dataset without script does not support regular JSON data file

### Link

https://huggingface.co/datasets/julien-c/label-studio-my-dogs

### Description

<img width="1115" alt="image" src="https://user-images.githubusercontent.com/326577/189422048-7e9c390f-bea7-4521-a232-43f049ccbd1f.png">


### Owner

Yes
ConnectionError: Couldn't reach https://raw.githubusercontent.com/huggingface/datasets/2.4.0/datasets/jsonl/jsonl.py

Hi,
When I use load_dataset from local jsonl files, below error happens, and I type the link into the browser prompting me `404: Not Found`. I download the other `.py` files using the same method and it works. It seems that the server is missing the appropriate file, or it is a problem with the code version.

```
ConnectionError: Couldn't reach https://raw.githubusercontent.com/huggingface/datasets/2.3.0/datasets/jsonl/jsonl.py (ConnectionError(MaxRetryError("HTTPSConnectionPool(host='raw.githubusercontent.com', port=443): Max retries exceeded with url: /huggingface/datasets/2.3.0/datasets/jsonl/jsonl.py (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x2b08342004c0>: Failed to establish a new connection: [Errno 101] Network is unreachable'))")))

```
larger dataset, larger GPU memory in the training phase? Is that correct?

    from datasets import set_caching_enabled
    set_caching_enabled(False)
    for ds_name in ["squad","newsqa","nqopen","narrativeqa"]:
            train_ds = load_from_disk("../../../dall/downstream/processedproqa/{}-train.hf".format(ds_name))

        break
    train_ds = concatenate_datasets([train_ds,train_ds,train_ds,train_ds]) #operation 1


   trainer = QuestionAnsweringTrainer( #huggingface trainer
        model=model,
        args=training_args,
        train_dataset=train_ds,
        eval_dataset= None,
        eval_examples=None,
        answer_column_name=answer_column,
        dataset_name="squad",
        tokenizer=tokenizer,
        data_collator=data_collator,
        compute_metrics=compute_metrics if training_args.predict_with_generate else None,
    )

with operation 1, the GPU memory increases from 16G to 23G
Trec Dataset has incorrect labels

## Describe the bug
Both coarse and fine labels seem to be out of line.


## Steps to reproduce the bug
```python
from datasets import load_dataset

dataset = "trec"
raw_datasets = load_dataset(dataset)
df = pd.DataFrame(raw_datasets["test"])
df.head()
```

## Expected results
text (string) | coarse_label (class label) | fine_label (class label)
-- | -- | --
How far is it from Denver to Aspen ? | 5  	(NUM) | 40  	(NUM:dist)
What county is Modesto , California in ? | 4  	(LOC) | 32  	(LOC:city)
Who was Galileo ? | 3  	(HUM) | 31  	(HUM:desc)
What is an atom ? | 2  	(DESC) | 24  	(DESC:def)
When did Hawaii become a state ? | 5  	(NUM) | 39  	(NUM:date)

## Actual results
  index | label-coarse  |label-fine                  |                    text
-- |-- | -- | --
0    |         4     |     40     | How far is it from Denver to Aspen ?
1      |       5        |  21  | What county is Modesto , California in ?
2        |     3        |  12        |                 Who was Galileo ?
3         |    0       |    7         |                What is an atom ?
4         |    4       |    8       |   When did Hawaii become a state ?

## Environment info

- `datasets` version: 2.4.0
- Platform: Linux-5.4.0-1086-azure-x86_64-with-glibc2.27
- Python version: 3.9.13
- PyArrow version: 8.0.0
- Pandas version: 1.4.3
Remove deprecated identical_ok

`huggingface-hub` says that the `identical_ok` argument of `HfApi.upload_file` is now deprecated, and will be removed soon. It even has no effect at the moment when it's passed:

```python
Args:
...
    identical_ok (`bool`, *optional*, defaults to `True`):
        Deprecated: will be removed in 0.11.0.
        Changing this value has no effect.
...
```

There was only one occurence of `identical_ok=False` but it's maybe not worth adding a check ti verify if the files were the same.

cc @mariosasko
vivos (Vietnamese speech corpus) dataset not accessible

## Describe the bug
VIVOS data is not accessible anymore, neither of these links work (at least from France):
* https://ailab.hcmus.edu.vn/assets/vivos.tar.gz (data)
* https://ailab.hcmus.edu.vn/vivos (dataset page) 

Therefore `load_dataset` doesn't work.

## Steps to reproduce the bug
```python
ds = load_dataset("vivos")
```

## Expected results
dataset loaded

## Actual results
```
ConnectionError: Couldn't reach https://ailab.hcmus.edu.vn/assets/vivos.tar.gz (ConnectionError(MaxRetryError("HTTPSConnectionPool(host='ailab.hcmus.edu.vn', port=443): Max retries exceeded with url: /assets/vivos.tar.gz (Caused by NewConnectionError('<urllib3.connection.HTTPSConnection object at 0x7f9d8a27d190>: Failed to establish a new connection: [Errno -5] No address associated with hostname'))")))
```

Will try to contact the authors, as we wanted to use Vivos as an example in documentation on how to create scripts for audio datasets (https://github.com/huggingface/datasets/pull/4872), because it's small and straightforward and uses tar archives.
Dataset Viewer issue for indonesian-nlp/librivox-indonesia

### Link

https://huggingface.co/datasets/indonesian-nlp/librivox-indonesia

### Description

I created a new speech dataset https://huggingface.co/datasets/indonesian-nlp/librivox-indonesia, but the dataset preview doesn't work with following error message:
```
Server error
Status code:   400
Exception:     TypeError
Message:       unsupported operand type(s) for +: 'NoneType' and 'str'
```
Please help, I am not sure what the problem here is. Thanks a lot.

### Owner

Yes
Dataset Viewer issue for bigscience-biomedical/biosses

### Link

https://huggingface.co/datasets/bigscience-biomedical/biosses

### Description

I've just been working on adding the dataset loader script to this dataset and working with the relative imports. I'm not sure how to interpret the error below (show where the dataset preview used to be) . 
```
Status code:   400
Exception:     ModuleNotFoundError
Message:       No module named 'datasets_modules.datasets.bigscience-biomedical--biosses.ddbd5893bf6c2f4db06f407665eaeac619520ba41f69d94ead28f7cc5b674056.bigbiohub'
```

### Owner

Yes
Fix missing tags in dataset cards

Fix missing tags in dataset cards:
- coqa
- hyperpartisan_news_detection
- opinosis
- scientific_papers
- scifact
- search_qa
- wiki_qa
- wiki_split
- wikisql

This PR partially fixes the missing tags in dataset cards. Subsequent PRs will follow to complete this task.

Related to:
- #4833
- #4891
- #4896
- #4908
- #4921
Add ability to read-write to SQL databases.

Fixes #3094 

Add ability to read/write to SQLite files and also read from any SQL database supported by SQLAlchemy.

I didn't add SQLAlchemy as a dependence as it is fairly big and it remains optional. 

I also recorded a Loom to showcase the feature.

https://www.loom.com/share/f0e602c2de8a46f58bca4b43333d541f