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↑  Chumley TW, Palmer JD, Mower JP, Fourcade HM, Calie PJ, Boore JL, Jansen RK (2006). “The complete chloroplast genome sequence of Pelargonium x hortorum: organization and evolution of the largest and most highly rearranged chloroplast genome of land plants”. Mol. Biol. Evol. 23 (11): 2175–90. doi:10.1093/molbev/msl089. PMID 16916942.
↑  Logacheva, Maria D.; Schelkunov, Mikhail I.; Nuraliev, Maxim S.; Samigullin, Tagir H.; Penin, Aleksey A. (ngày 1 tháng 1 năm 2014). “The Plastid Genome of Mycoheterotrophic Monocot Petrosavia stellaris Exhibits Both Gene Losses and Multiple Rearrangements”. Genome Biology and Evolution (bằng tiếng Anh). 6 (1): 238–246. doi:10.1093/gbe/evu001. ISSN 1759-6653. PMC 3914687. PMID 24398375.
↑  Chang CC, Lin HC, Lin IP, Chow TY, Chen HH, Chen WH, Cheng CH, Lin CY, Liu SM, Chang CC, Chaw SM (2006). “The chloroplast genome of Phalaenopsis aphrodite (Orchidaceae): comparative analysis of evolutionary rate with that of grasses and its phylogenetic implications”. Mol. Biol. Evol. 23 (2): 279–91. doi:10.1093/molbev/msj029. PMID 16207935.
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1 2  Bellot, Sidonie; Renner, Susanne S. (ngày 1 tháng 1 năm 2016). “The Plastomes of Two Species in the Endoparasite Genus Pilostyles (Apodanthaceae) Each Retain Just Five or Six Possibly Functional Genes”. Genome Biology and Evolution (bằng tiếng Anh). 8 (1): 189–201. doi:10.1093/gbe/evv251. ISSN 1759-6653. PMC 4758247. PMID 26660355.
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↑  Delannoy, Etienne; Fujii, Sota; Francs-Small, Catherine Colas des; Brundrett, Mark; Small, Ian (ngày 1 tháng 7 năm 2011). “Rampant Gene Loss in the Underground Orchid Rhizanthella gardneri Highlights Evolutionary Constraints on Plastid Genomes”. Molecular Biology and Evolution (bằng tiếng Anh). 28 (7): 2077–2086. doi:10.1093/molbev/msr028. ISSN 0737-4038. PMC 3112369. PMID 21289370.
↑  Lam, Vivienne K. Y.; Gomez, Marybel Soto; Graham, Sean W. (ngày 1 tháng 8 năm 2015). “The Highly Reduced Plastome of Mycoheterotrophic Sciaphila (Triuridaceae) Is Colinear with Its Green Relatives and Is under Strong Purifying Selection”. Genome Biology and Evolution (bằng tiếng Anh). 7 (8): 2220–2236. doi:10.1093/gbe/evv134. ISSN 1759-6653. PMC 4558852. PMID 26170229.
↑  Chung HJ, Jung JD, Park HW, Kim JH, Cha HW, Min SR, Jeong WJ, Liu JR (2006). “The complete chloroplast genome sequences of Solanum tuberosum and comparative analysis with Solanaceae species identified the presence of a 241-bp deletion in cultivated potato chloroplast DNA sequence”. Plant Cell Rep. 25 (12): 1369–79. doi:10.1007/s00299-006-0196-4. PMID 16835751.
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↑  Haberle RC, Fourcade HM, Boore JL, Jansen RK (2008). “Extensive Rearrangements in the Chloroplast Genome of Trachelium caeruleum Are Associated with Repeats and tRNA Genes”. Journal of Molecular Evolution. 66 (4): 350–361. doi:10.1007/s00239-008-9086-4.
↑  Zhengqiu Cai et al, Extensive Reorganization of the Plastid Genome of Trifolium subterraneum (Fabaceae) Is Associated with Numerous Repeated Sequences and Novel DNA Insertions, J Mol Evol 67: 696–704 (2008)doi:10.1007/s00239-008-9180-7
↑  Ogihara, Yasunari; Isono, Kazuriho; Kojima, Toshio; Endo, Akira; Hanaoka, Mitsumasa; Shiina, Takashi; Terachi, Toru; Utsugi, Shigeko;  và đồng nghiệp (2000). “Chinese Spring Wheat (Triticum aestivum L.) Chloroplast Genome: Complete Sequence and Contig Clones”. Plant Molecular Biology Reporter. 18 (3): 243–253. doi:10.1007/BF02823995.
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↑  Fajardo D, Senalik D, Ames M, Zhu H, Steffan SA, Harbut R, Polashock J, Vorsa N, Gillespie E, Kron K, Zalapa JE (2013). “Complete plastid genome sequence of Vaccinium macrocarpon: structure, gene content, and rearrangements revealed by next generation sequencing”. Tree Genetics & Genomes. 9 (2): 489–498. doi:10.1007/s11295-012-0573-9.
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↑  Maier RM, Neckermann K, Igloi GL, Kössel H (1995). “Complete sequence of the maize chloroplast genome: gene content, hotspots of divergence and fine tuning of genetic information by transcript editing”. J. Mol. Biol. 251 (5): 614–28. doi:10.1006/jmbi.1995.0460. PMID 7666415.
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1 2  Leliaert, Frederik; Lopez-Bautista, Juan M (2015). “The chloroplast genomes of Bryopsis plumosa and Tydemania expeditionis (Bryopsidales, Chlorophyta): compact genomes and genes of bacterial origin”. BMC Genomics. 16 (1): 204. doi:10.1186/s12864-015-1418-3. ISSN 1471-2164.
↑  Turmel M, Otis C, Lemieux C (tháng 8 năm 2002). “The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants”. Proc. Natl. Acad. Sci. U.S.A. 99 (17): 11275–80. Bibcode:2002PNAS...9911275T. doi:10.1073/pnas.162203299. PMC 123247. PMID 12161560.
↑  Wakasugi T, Nagai T, Kapoor M, Sugita M, Ito M, Ito S, Tsudzuki J, Nakashima K, Tsudzuki T, Suzuki Y, Hamada A, Ohta T, Inamura A, Yoshinaga K, Sugiura M (tháng 5 năm 1997). “Complete nucleotide sequence of the chloroplast genome from the green alga Chlorella vulgaris: the existence of genes possibly involved in chloroplast division”. Proc. Natl. Acad. Sci. U.S.A. 94 (11): 5967–72. Bibcode:1997PNAS...94.5967W. doi:10.1073/pnas.94.11.5967. PMC 20890. PMID 9159184.
↑  Turmel M, Otis C, Lemieux C (2007). “An unexpectedly large and loosely packed mitochondrial genome in the charophycean green alga Chlorokybus atmophyticus”. BMC Genomics. 8: 137. doi:10.1186/1471-2164-8-137. PMC 1894977. PMID 17537252.
↑  Smith DR,  và đồng nghiệp (2010). “The Dunaliella salina organelle genomes: large sequences, inflated with intronic and intergenic DNA”. BMC Plant Biol. 10: 83. doi:10.1186/1471-2229-10-83. PMC 3017802. PMID 20459666.
↑  de Koning AP, Keeling PJ (2006). “The complete plastid genome sequence of the parasitic green alga Helicosporidium sp. is highly reduced and structured”. BMC Biol. 4: 12. doi:10.1186/1741-7007-4-12. PMC 1463013. PMID 16630350.
↑  de Cambiaire JC, Otis C, Turmel M, Lemieux C (2007). “The chloroplast genome sequence of the green alga Leptosira terrestris: multiple losses of the inverted repeat and extensive genome rearrangements within the Trebouxiophyceae”. BMC Genomics. 8: 213. doi:10.1186/1471-2164-8-213. PMC 1931444. PMID 17610731.
1 2 3  Turmel M, Gagnon MC, O'Kelly CJ, Otis C, Lemieux C (tháng 3 năm 2009). “The chloroplast genomes of the green algae Pyramimonas, Monomastix, and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids”. Mol. Biol. Evol. 26 (3): 631–48. doi:10.1093/molbev/msn285. PMID 19074760.
↑  Turmel M, Otis C, Lemieux C (tháng 8 năm 1999). “The complete chloroplast DNA sequence of the green alga Nephroselmis olivacea: insights into the architecture of ancestral chloroplast genomes”. Proc. Natl. Acad. Sci. U.S.A. 96 (18): 10248–53. Bibcode:1999PNAS...9610248T. doi:10.1073/pnas.96.18.10248. PMC 17874. PMID 10468594.
↑  Brouard JS, Otis C, Lemieux C, Turmel M (2008). “Chloroplast DNA sequence of the green alga Oedogonium cardiacum (Chlorophyceae): unique genome architecture, derived characters shared with the Chaetophorales and novel genes acquired through horizontal transfer”. BMC Genomics. 9: 290. doi:10.1186/1471-2164-9-290. PMC 2442088. PMID 18558012.
↑  Pombert JF, Lemieux C, Turmel M (2006). “The complete chloroplast DNA sequence of the green alga Oltmannsiellopsis viridis reveals a distinctive quadripartite architecture in the chloroplast genome of early diverging ulvophytes”. BMC Biol. 4: 3. doi:10.1186/1741-7007-4-3. PMC 1402334. PMID 16472375.
↑  Robbens S, Derelle E, Ferraz C, Wuyts J, Moreau H, Van de Peer Y (tháng 4 năm 2007). “The complete chloroplast and mitochondrial DNA sequence of Ostreococcus tauri: organelle genomes of the smallest eukaryote are examples of compaction”. Mol. Biol. Evol. 24 (4): 956–68. doi:10.1093/molbev/msm012. PMID 17251180.
↑  Pombert JF, Otis C, Lemieux C, Turmel M (tháng 9 năm 2005). “The chloroplast genome sequence of the green alga Pseudendoclonium akinetum (Ulvophyceae) reveals unusual structural features and new insights into the branching order of chlorophyte lineages”. Mol. Biol. Evol. 22 (9): 1903–18. doi:10.1093/molbev/msi182. PMID 15930151.
↑  de Cambiaire JC, Otis C, Lemieux C, Turmel M (2006). “The complete chloroplast genome sequence of the chlorophycean green alga Scenedesmus obliquus reveals a compact gene organization and a biased distribution of genes on the two DNA strands”. BMC Evol. Biol. 6: 37. doi:10.1186/1471-2148-6-37. PMC 1513399. PMID 16638149.
↑  Turmel M, Otis C, Lemieux C (2005). “The complete chloroplast DNA sequences of the charophycean green algae Staurastrum and Zygnema reveal that the chloroplast genome underwent extensive changes during the evolution of the Zygnematales”. BMC Biol. 3: 22. doi:10.1186/1741-7007-3-22. PMC 1277820. PMID 16236178.
↑  Bélanger AS, Brouard JS, Charlebois P, Otis C, Lemieux C, Turmel M (tháng 11 năm 2006). “Distinctive architecture of the chloroplast genome in the chlorophycean green alga Stigeoclonium helveticum”. Mol. Genet. Genomics. 276 (5): 464–77. doi:10.1007/s00438-006-0156-2. PMID 16944205.[liên kết hỏng]
↑  Melton, James T.; Leliaert, Frederik; Tronholm, Ana; Lopez-Bautista, Juan M. (2015). “The Complete Chloroplast and Mitochondrial Genomes of the Green Macroalga Ulva sp. UNA00071828 (Ulvophyceae, Chlorophyta)”. PLoS ONE. 10 (4): e0121020. Bibcode:2015PLoSO..1021020M. doi:10.1371/journal.pone.0121020. ISSN 1932-6203. PMC 4388391. PMID 25849557.
↑  Smith DR, Lee RW (tháng 3 năm 2009). “The mitochondrial and plastid genomes of Volvox carteri: bloated molecules rich in repetitive DNA”. BMC Genomics. 10 (132): 132. doi:10.1186/1471-2164-10-132. PMC 2670323. PMID 19323823.
↑  Ohta N, Matsuzaki M, Misumi O, Miyagishima SY, Nozaki H, Tanaka K, Shin-I T, Kohara Y, Kuroiwa T (2003). “Complete sequence and analysis of the plastid genome of the unicellular red alga Cyanidioschyzon merolae”. DNA Res. 10 (2): 67–77. doi:10.1093/dnares/10.2.67. PMID 12755171.
↑  Glöckner G, Rosenthal A, Valentin K (2000). “The structure and gene repertoire of an ancient red algal plastid genome”. J. Mol. Evol. 51 (4): 382–90. doi:10.1007/s002390010101. PMID 11040290.[liên kết hỏng]
↑  Hagopian JC, Reis M, Kitajima JP, Bhattacharya D, de Oliveira MC (2004). “Comparative analysis of the complete plastid genome sequence of the red alga Gracilaria tenuistipitata var. liui provides insights into the evolution of rhodoplasts and their relationship to other plastids”. J. Mol. Evol. 59 (4): 464–77. doi:10.1007/s00239-004-2638-3. PMID 15638458.
↑  Douglas SE, Penny SL (1999). “The plastid genome of the cryptophyte alga, Guillardia theta: complete sequence and conserved synteny groups confirm its common ancestry with red algae”. J. Mol. Evol. 48 (2): 236–44. doi:10.1007/PL00006462. PMID 9929392.[liên kết hỏng]
↑  E. Virginia Armbrust, et alii (42 authors). 2004. "The Genome of the Diatom Thalassiosira pseudonana: Ecology, Evolution, and Metabolism". Science 306(5693):79-86.
↑  Rogers MB, Gilson PR, Su V, McFadden GI, Keeling PJ (2007). “The complete chloroplast genome of the chlorarachniophyte Bigelowiella natans: evidence for independent origins of chlorarachniophyte and euglenid secondary endosymbionts”. Mol. Biol. Evol. 24 (1): 54–62. doi:10.1093/molbev/msl129. PMID 16990439.
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