Danh sách bộ gen lạp thể đã giải trình tự
Chú thích

1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24  Moore MJ, Soltis PS, Bell CD, Burleigh JG, Soltis DE (2010). “Phylogenetic analysis of 83 plastid genes further resolves the early diversification of eudicots”. Proc. Natl. Acad. Sci. U.S.A. 107 (10): 4623–8. Bibcode:2010PNAS..107.4623M. doi:10.1073/pnas.0907801107. PMC 2842043. PMID 20176954.
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↑  Plastid genome evolution of the non-photosynthetic liverwort Aneura mirabilis (Malmb.) Wickett & Goffinet (Aneuraceae)
↑  Masanori Kugita; Akira Kaneko, Yuhei Yamamoto, Yuko Takeya, Tohoru Matsumoto and Koichi Yoshinaga (1986). “The complete nucleotide sequence of the hornwort (Anthoceros formosae) chloroplast genome: insight into the earliest land plants”. Nucleic Acids Research. 31 (2): 572–4. doi:10.1093/nar/gkg155.Quản lý CS1: nhiều tên: danh sách tác giả (liên kết)
↑  K Ohyama, Fukuzawa, H., Kohchi, T., Shirai, H., Sano, T., Chang Z, Aota S, Inokuchi H, Ozeki H (2003). “Chloroplast gene organization deduced from complete sequence of liverwort Marchantia polymorpha chloroplast DNA”. Nature. 322 (6079): 716–721. Bibcode:1986Natur.322..572O. doi:10.1038/322572a0.
↑  Juan Carlos Villarreal; Laura Lowe Forrest, Norman Wickett and Bernard Goffinet (2013). “The plastid genome of the hornwort Nothoceros aenigmaticus (Dendrocerotaceae): Phylogenetic signal in inverted repeat expansion, pseudogenization, and intron gain” (PDF). Am.J.Bot. 103 (3): 467–477. doi:10.3732/ajb.1200429.
↑  Christopher Grosche; Helena T. Funk, Uwe G. Maier and Stefan Zauner (2012). “The Chloroplast Genome of Pellia endiviifolia: Gene Content, RNA-Editing Pattern, and the Origin of Chloroplast Editing” (PDF). Genome Biology and Evolution. 4 (12): 1349–1357. doi:10.1093/gbe/evs114.
↑  Sugiura C, Kobayashi Y, Aoki S, Sugita C, Sugita M (2003). “Complete chloroplast DNA sequence of the moss Physcomitrella patens: evidence for the loss and relocation of rpoA from the chloroplast to the nucleus”. Nucleic Acids Res. 31 (18): 5324–31. doi:10.1093/nar/gkg726. PMC 203311. PMID 12954768.
↑  Laura L. Forrest; Norman J. Wickett, Cymon J. Cox & Bernard Goffinet (2011). “Deep sequencing of Ptilidium (Ptilidiaceae) suggests evolutionary stasis in liverwort plastid genome structure” (PDF). Plant Ecology and Evolution. 144 (1): 29–43.
↑  Melvin J Olive; Andrew G Murdock, Brent D Mishler, Jennifer V Kuehl, Jeffrey L Boore, Dina F Mandoli, Karin DE Everett, Paul G Wolf, Aaron M Duffy and Kenneth G Karol (2010). “Chloroplast genome sequence of the moss Tortula ruralis: Gene content, polymorphism, and structural arrangement relative to other green plant chloroplast genomes”. BMC Genomics. 11: 143. doi:10.1186/1471-2164-11-143.Quản lý CS1: nhiều tên: danh sách tác giả (liên kết)
↑  Wolf PG, Rowe CA, Sinclair RB, Hasebe M (2003). “Complete nucleotide sequence of the chloroplast genome from a leptosporangiate fern, Adiantum capillus-veneris L”. DNA Res. 10 (2): 59–65. doi:10.1093/dnares/10.2.59. PMID 12755170.
↑  Gao L, Yi X, Yang YX, Su YJ, Wang T (2009). “Complete chloroplast genome sequence of a tree fern Alsophila spinulosa: insights into evolutionary changes in fern chloroplast genomes”. BMC Evolutionary Biology. 9: 130. doi:10.1186/1471-2148-9-130.
↑  Roper, Jessie M.; Kellon Hansen, S.; Wolf, Paul G.; Karol, Kenneth G.; Mandoli, Dina F.; Everett, Karin D. E.; Kuehl, Jennifer; Boore, Jeffrey L. (2007). “The Complete Plastid Genome Sequence of Angiopteris evecta (G. Forst.) Hoffm. (Marattiaceae)”. American Fern Journal. 97 (2): 95–106. doi:10.1640/0002-8444(2007)97[95:TCPGSO]2.0.CO;2.
↑  Wolf PG, Karol KG, Mandoli DF, Kuehl J, Arumuganathan K, Ellis MW, Mishler BD, Kelch DG, Olmstead RG, Boore JL (2005). “The first complete chloroplast genome sequence of a lycophyte, Huperzia lucidula (Lycopodiaceae)”. Gene. 350 (2): 117–28. doi:10.1016/j.gene.2005.01.018. PMID 15788152.
↑  Tatsuya Wakasugi, A. Nishikawa, Kyoji Yamada, and Masahiro Sugiura. 1998. "Complete nucleotide sequence of the plastid genome from a fern, Psilotum nudum". Endocytobiology and Cell Research 13(supplement):147. see External links below.
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1 2 3 4 5 6  Jansen RK, Cai Z, Raubeson LA, Daniell H, Depamphilis CW, Leebens-Mack J, Müller KF, Guisinger-Bellian M, Haberle RC, Hansen AK, Chumley TW, Lee SB, Peery R, McNeal JR, Kuehl JV, Boore JL (2007). “Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns”. Proc. Natl. Acad. Sci. U.S.A. 104 (49): 19369–74. Bibcode:2007PNAS..10419369J. doi:10.1073/pnas.0709121104. PMC 2148296. PMID 18048330.
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1 2  Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW (2005). “Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone”. Mol. Biol. Evol. 22 (10): 1948–63. doi:10.1093/molbev/msi191. PMID 15944438.
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1 2 3 4 5 6 7 8 9 10  Guisinger et al, Implications of the Plastid Genome Sequence of Typha (Typhaceae, Poales) for Understanding Genome Evolution in Poaceae, J Mol Evol 70: 149–166 (2010)
↑  Yan, Minghui; Moore, Michael J.; Meng, Aiping; Yao, Xiaohong; Wang, Hengchang (ngày 21 tháng 9 năm 2016). “The first complete plastome sequence of the basal asterid family Styracaceae (Ericales) reveals a large inversion”. Plant Systematics and Evolution (bằng tiếng Anh). 303 (1): 61–70. doi:10.1007/s00606-016-1352-0. ISSN 0378-2697.
1 2  Kim, Jung Sung; Kim, Joo-Hwan (ngày 18 tháng 6 năm 2013). “Comparative Genome Analysis and Phylogenetic Relationship of Order Liliales Insight from the Complete Plastid Genome Sequences of Two Lilies (Lilium longiflorum and Alstroemeria aurea)”. PLOS ONE. 8 (6): e68180. doi:10.1371/journal.pone.0068180. ISSN 1932-6203. PMC 3688979. PMID 23950788.
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1 2 3 4  Hansen DR, Dastidar SG, Cai Z, Penaflor C, Kuehl JV, Boore JL, Jansen RK (2007). “Phylogenetic and evolutionary implications of complete chloroplast genome sequences of four early-diverging angiosperms: Buxus (Buxaceae), Chloranthus (Chloranthaceae), Dioscorea (Dioscoreaceae), and Illicium (Schisandraceae)”. Mol. Phylogenet. Evol. 45 (2): 547–63. doi:10.1016/j.ympev.2007.06.004. PMID 17644003.
↑  Goremykin, V.; Hirsch-Ernst, K. I.; Lfl, S.; Hellwig, F. H. (2003). “The chloroplast genome of the basal angiosperm Calycanthus fertilis – structural and phylogenetic analyses”. Plant Systematics and Evolution. 242 (1–4): 119–135. doi:10.1007/s00606-003-0056-4.
↑  Yang, Yongzhi; Wang, Mingcheng; Lu, Zhiqiang; Xie, Xiuyue; Feng, Shuo (ngày 4 tháng 1 năm 2017). “Characterization of the complete chloroplast genome of Carpinus tientaiensis”. Conservation Genetics Resources (bằng tiếng Anh): 1–3. doi:10.1007/s12686-016-0668-y. ISSN 1877-7252.
↑  Bausher MG, Singh ND, Lee SB, Jansen RK, Daniell H (2006). “The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms”. BMC Plant Biol. 6: 21. doi:10.1186/1471-2229-6-21. PMC 1599732. PMID 17010212.
↑  Huang, Ya-Yi; Matzke, Antonius J. M.; Matzke, Marjori (ngày 30 tháng 8 năm 2013). “Complete Sequence and Comparative Analysis of the Chloroplast Genome of Coconut Palm (Cocos nucifera)”. PLoS ONE. 8 (8): e74736. Bibcode:2013PLoSO...874736H. doi:10.1371/journal.pone.0074736. ISSN 1932-6203. PMC 3758300. PMID 24023703.
↑  Samson N, Bausher MG, Lee SB, Jansen RK, Daniell H (2007). “The complete nucleotide sequence of the coffee (Coffea arabica L.) chloroplast genome: organization and implications for biotechnology and phylogenetic relationships amongst angiosperms”. Plant Biotechnol. J. 5 (2): 339–53. doi:10.1111/j.1467-7652.2007.00245.x. PMC 3473179. PMID 17309688.
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↑  Wicke, Susann; Müller, Kai F.; Pamphilis, Claude W. de; Quandt, Dietmar; Wickett, Norman J.; Zhang, Yan; Renner, Susanne S.; Schneeweiss, Gerald M. (ngày 1 tháng 10 năm 2013). “Mechanisms of Functional and Physical Genome Reduction in Photosynthetic and Nonphotosynthetic Parasitic Plants of the Broomrape Family”. The Plant Cell (bằng tiếng Anh). 25 (10): 3711–3725. doi:10.1105/tpc.113.113373. ISSN 1532-298X. PMC 3877813. PMID 24143802.
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1 2  McNeal JR, Kuehl JV, Boore JL, de Pamphilis CW (2007). “Complete plastid genome sequences suggest strong selection for retention of photosynthetic genes in the parasitic plant genus Cuscuta”. BMC Plant Biol. 7: 57. doi:10.1186/1471-2229-7-57. PMC 2216012. PMID 17956636.
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↑  Lin, Choun-Sea; Chen, Jeremy J. W.; Huang, Yao-Ting; Chan, Ming-Tsair; Daniell, Henry; Chang, Wan-Jung; Hsu, Chen-Tran; Liao, De-Chih; Wu, Fu-Huei (ngày 12 tháng 3 năm 2015). “The location and translocation of ndh genes of chloroplast origin in the Orchidaceae family”. Scientific Reports (bằng tiếng Anh). 5: 9040. Bibcode:2015NatSR...5E9040L. doi:10.1038/srep09040. ISSN 2045-2322. PMC 4356964. PMID 25761566.
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1 2  Schelkunov, Mikhail I.; Shtratnikova, Viktoria Yu; Nuraliev, Maxim S.; Selosse, Marc-Andre; Penin, Aleksey A.; Logacheva, Maria D. (ngày 1 tháng 4 năm 2015). “Exploring the Limits for Reduction of Plastid Genomes: A Case Study of the Mycoheterotrophic Orchids Epipogium aphyllum and Epipogium roseum”. Genome Biology and Evolution (bằng tiếng Anh). 7 (4): 1179–1191. doi:10.1093/gbe/evv019. ISSN 1759-6653. PMC 4419786. PMID 25635040.
1 2  Blazier, John C.; Jansen, Robert K.; Mower, Jeffrey P.; Govindu, Madhu; Zhang, Jin; Weng, Mao-Lun; Ruhlman, Tracey A. (ngày 1 tháng 6 năm 2016). “Variable presence of the inverted repeat and plastome stability in Erodium”. Annals of Botany. 117 (7): 1209–1220. doi:10.1093/aob/mcw065. ISSN 0305-7364. PMC 4904181. PMID 27192713.
1 2 3  Guisinger, Mary M.; Kuehl, Jennifer V.; Boore, Jeffrey L.; Jansen, Robert K. (ngày 1 tháng 1 năm 2011). “Extreme Reconfiguration of Plastid Genomes in the Angiosperm Family Geraniaceae: Rearrangements, Repeats, and Codon Usage”. Molecular Biology and Evolution (bằng tiếng Anh). 28 (1): 583–600. doi:10.1093/molbev/msq229. ISSN 0737-4038. PMID 20805190.
↑  Steane DA (2005). “Complete nucleotide sequence of the chloroplast genome from the Tasmanian blue gum, Eucalyptus globulus (Myrtaceae)”. DNA Res. 12 (3): 215–20. doi:10.1093/dnares/dsi006. PMID 16303753.
↑  Logacheva MD, Samigullin TH, Dhingra A, Penin AA (2008). “Comparative chloroplast genomics and phylogenetics of Fagopyrum esculentum ssp. ancestrale -a wild ancestor of cultivated buckwheat”. BMC Plant Biol. 8: 59. doi:10.1186/1471-2229-8-59. PMC 2430205. PMID 18492277.
↑  Saski C, Lee SB, Daniell H, Wood TC, Tomkins J, Kim HG, Jansen RK (2005). “Complete chloroplast genome sequence of Gycine max and comparative analyses with other legume genomes”. Plant Mol. Biol. 59 (2): 309–22. doi:10.1007/s11103-005-8882-0. PMID 16247559.
↑  Rashid Ismael Hag Ibrahim; Jun-Ichi Azuma and Masahiro Sakamoto (2006). “Complete Nucleotide Sequence of the Cotton (Gossypium barbadense L.) Chloroplast Genome with a Comparative Analysis of Sequences among 9 Dicot Plants”. Genes & Genetic Systems. 81 (5): 311–321. doi:10.1266/ggs.81.311.[liên kết hỏng]
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1 2  Timme RE, Kuehl JV, Boore JL, Jansen RK (2007). “A comparative analysis of the Lactuca and Helianthus (Asteraceae) plastid genomes: identification of divergent regions and categorization of shared repeats”. Am. J. Bot. 94 (3): 302–12. doi:10.3732/ajb.94.3.302. PMID 21636403.
↑  Naumann, Julia; Der, Joshua P.; Wafula, Eric K.; Jones, Samuel S.; Wagner, Sarah T.; Honaas, Loren A.; Ralph, Paula E.; Bolin, Jay F.; Maass, Erika; Neinhuis, Christoph; Wanke, Stefan; dePamphilis, Claude W. (ngày 1 tháng 2 năm 2016). “Detecting and Characterizing the Highly Divergent Plastid Genome of the Nonphotosynthetic Parasitic Plant Hydnora visseri (Hydnoraceae)”. Genome Biology and Evolution (bằng tiếng Anh). 8 (2): 345–363. doi:10.1093/gbe/evv256. ISSN 1759-6653. PMC 4779604. PMID 26739167.Quản lý CS1: ngày tháng và năm (liên kết)
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↑  Malé, Pierre-Jean G.; Bardon, Léa; Besnard, Guillaume; Coissac, Eric; Delsuc, Frédéric; Engel, Julien; Lhuillier, Emeline; Scotti-Saintagne, Caroline; Tinaut, Alexandra (ngày 1 tháng 9 năm 2014). “Genome skimming by shotgun sequencing helps resolve the phylogeny of a pantropical tree family”. Molecular Ecology Resources (bằng tiếng Anh). 14 (5): 966–975. doi:10.1111/1755-0998.12246. ISSN 1755-0998.
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↑  Kato T, Kaneko T, Sato S, Nakamura Y, Tabata S (2000). “Complete structure of the chloroplast genome of a legume, Lotus japonicus”. DNA Res. 7 (6): 323–30. doi:10.1093/dnares/7.6.323. PMID 11214967.
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↑  Ravin, Nikolai V.; Gruzdev, Eugeny V.; Beletsky, Alexey V.; Mazur, Alexander M.; Prokhortchouk, Egor B.; Filyushin, Mikhail A.; Kochieva, Elena Z.; Kadnikov, Vitaly V.; Mardanov, Andrey V. (ngày 1 tháng 1 năm 2016). “The loss of photosynthetic pathways in the plastid and nuclear genomes of the non-photosynthetic mycoheterotrophic eudicot Monotropa hypopitys”. BMC Plant Biology. 16 (Suppl 3): 153–161. doi:10.1186/s12870-016-0929-7. ISSN 1471-2229. PMC 5123295.
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↑  Shetty, Santoshkumar M.; Shah, Maria Ulfa Md; Makale, Kavyashree; Mohd-Yusuf, Yusmin; Khalid, Norzulaani; Othman, Rofina Yasmin (ngày 1 tháng 7 năm 2016). “Complete Chloroplast Genome Sequence of Corroborates Structural Heterogeneity of Inverted Repeats in Wild Progenitors of Cultivated Bananas and Plantains”. The Plant Genome (bằng tiếng Anh). 9 (2). doi:10.3835/plantgenome2015.09.0089. ISSN 1940-3372. Bản gốc lưu trữ ngày 18 tháng 1 năm 2017. Truy cập ngày 22 tháng 2 năm 2017.
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