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Bibliyografya > Articles > Phylogenetics

Bremer, Kåre; Wanntorp, Hans-Erik (Aug 1978). "Phylogenetic Systematics in Botany". Taxon. 27 (4): 317-329. doi:10.2307/1220367. JSTOR 1220367.
Cantino, Philip D.; Doyle, James A.; Graham, Sean W.; Judd, Walter S.; Olmstead, Richard G.; Soltis, Douglas E.; Soltis, Pamela S.; Donoghue, Michael J. (2007). "Towards a phylogenetic nomenclature of Tracheophyta" (PDF). Taxon. 56 (3): 822-846. doi:10.2307/25065865. JSTOR 25065865. 11 Temmuz 2021 tarihinde kaynağından arşivlendi (PDF). Erişim tarihi: 15 Ocak 2021.
Chase, Mark W.; Soltis, Douglas E.; Olmstead, Richard G.; Morgan, David; Les, Donald H.; Mishler, Brent D.; Duvall, Melvin R.; Price, Robert A.; Hills, Harold G.; Qiu, Yin-Long; Kron, Kathleen A.; Rettig, Jeffrey H.; Conti, Elena; Palmer, Jeffrey D.; Manhart, James R.; Sytsma, Kenneth J.; Michaels, Helen J.; Kress, W. John; Karol, Kenneth G.; Clark, W. Dennis; Hedren, Mikael; Gaut, Brandon S.; Jansen, Robert K.; Kim, Ki-Joong; Wimpee, Charles F.; Smith, James F.; Furnier, Glenn R.; Strauss, Steven H.; Xiang, Qui-Yun; Plunkett, Gregory M.; Soltis, Pamela S.; Swensen, Susan M.; Williams, Stephen E.; Gadek, Paul A.; Quinn, Christopher J.; Eguiarte, Luis E.; Golenberg, Edward; Learn, Gerald H.; Graham, Sean W.; Barrett, Spencer C. H.; Dayanandan, Selvadurai; Albert, Victor A. (1993). "Phylogenetics of Seed Plants: An Analysis of Nucleotide Sequences from the Plastid Gene rbcL" (PDF). Annals of the Missouri Botanical Garden. 80 (3): 528. doi:10.2307/2399846. JSTOR 2399846. 23 Ekim 2020 tarihinde kaynağından arşivlendi (PDF). Erişim tarihi: 15 Ocak 2021.
Chase, Mark W. (2004). "Monocot relationships: an overview". American Journal of Botany. 91 (10): 1645-1655. doi:10.3732/ajb.91.10.1645 . PMID 21652314.
Davis, Jerrold I.; Stevenson, Dennis W.; Petersen, Gitte; Seberg, Ole; Campbell, Lisa M.; Freudenstein, John V.; Goldman, Douglas H.; Hardy, Christopher R.; Michelangeli, Fabian A.; Simmons, Mark P.; Specht, Chelsea D.; Vergara-Silva, Francisco; Gandolfo, María (1 Temmuz 2004). "A Phylogeny of the Monocots, as Inferred from rbcL and atpA Sequence Variation, and a Comparison of Methods for Calculating Jackknife and Bootstrap Values" (PDF). Systematic Botany. 29 (3): 467-510. doi:10.1600/0363644041744365. 23 Ekim 2020 tarihinde kaynağından arşivlendi (PDF). Erişim tarihi: 15 Ocak 2021.
Du, Zhi-Yuan; Wang, Qing-Feng (July 2016). "Phylogenetic tree of vascular plants reveals the origins of aquatic angiosperms". Journal of Systematics and Evolution. 54 (4): 342-348. doi:10.1111/jse.12182 .
Duvall, Melvin R.; Clegg, Michael T.; Chase, Mark W.; Clark, W. Dennis; Kress, W. John; Hills, Harold G.; Eguiarte, Luis E.; Smith, James F.; Gaut, Brandon S.; Zimmer, Elizabeth A.; Learn, Gerald H. (1 Ocak 1993). "Phylogenetic Hypotheses for the Monocotyledons Constructed from rbcL Sequence Data". Annals of the Missouri Botanical Garden. 80 (3): 607-619. doi:10.2307/2399849. JSTOR 2399849.
Endress, P. K.; Doyle, J. A. (8 Ocak 2009). "Reconstructing the ancestral angiosperm flower and its initial specializations". American Journal of Botany. 96 (1): 22-66. doi:10.3732/ajb.0800047 . PMID 21628175.
Givnish, Thomas J.; Pires, J.Chris; Graham, Sean W.; McPherson, Marc A.; Prince, Linda M.; Patterson, Thomas B.; Rai, Hardeep S.; Roalson, Eric H.; Evans, Timothy M.; Hahn, William J; Millam, Kendra C.; Meerow, Alan W; Molvray, Mia; Kores, Paul J.; O'Brien, Heath E.; Hall, Jocelyn C.; Kress, W. John; Sytsma, Kenneth J. (2005). "Repeated evolution of net venation and fleshy fruits among monocots in shaded habitats confirms a priori predictions: evidence from an ndhF phylogeny". Proceedings of the Royal Society B: Biological Sciences. 272 (1571): 1481-1490. doi:10.1098/rspb.2005.3067. PMC 1559828 $2. PMID 16011923.
Givnish, Thomas J.; Ames, Mercedes; McNeal, Joel R.; McKain, Michael R.; Steele, P. Roxanne; dePamphilis, Claude W.; Graham, Sean W.; Pires, J. Chris; Stevenson, Dennis W.; Zomlefer, Wendy B.; Briggs, Barbara G.; Duvall, Melvin R.; Moore, Michael J.; Heaney, J. Michael; Soltis, Douglas E.; Soltis, Pamela S.; Thiele, Kevin; Leebens-Mack, James H. (27 Aralık 2010). "Assembling the Tree of the Monocotyledons: Plastome Sequence Phylogeny and Evolution of Poales". Annals of the Missouri Botanical Garden. 97 (4): 584-616. doi:10.3417/2010023.
Givnish, Thomas J.; Zuluaga, Alejandro; Spalink, Daniel; Soto Gomez, Marybel; Lam, Vivienne K. Y.; Saarela, Jeffrey M.; Sass, Chodon; Iles, William J. D.; de Sousa, Danilo José Lima; Leebens-Mack, James; Chris Pires, J.; Zomlefer, Wendy B.; Gandolfo, Maria A.; Davis, Jerrold I.; Stevenson, Dennis W.; dePamphilis, Claude; Specht, Chelsea D.; Graham, Sean W.; Barrett, Craig F.; Ané, Cécile (November 2018). "Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots". American Journal of Botany. 105 (11): 1888-1910. doi:10.1002/ajb2.1178 . PMID 30368769.
Goremykin, Vadim V.; Hansman, Sabine; Martin, William F. (March 1997). "Evolutionary analysis of 58 proteins encoded in six completely sequenced chloroplast genomes: revised molecular estimates of two seed plant divergence times". Plant Syst. Evol. 206 (1): 337-351. doi:10.1007/bf00987956.
Hertweck, Kate L.; Kinney, Michael S.; Stuart, Stephanie A.; Maurin, Olivier; Mathews, Sarah; Chase, Mark W.; Gandolfo, Maria A.; Pires, J. Chris (July 2015). "Phylogenetics, divergence times and diversification from three genomic partitions in monocots". Botanical Journal of the Linnean Society. 178 (3): 375-393. doi:10.1111/boj.12260 .
Janssen, Thomas; Bremer, Kare (December 2004). "The age of major monocot groups inferred from 800+ rbcL sequences". Botanical Journal of the Linnean Society. 146 (4): 385-398. doi:10.1111/j.1095-8339.2004.00345.x .
Leebens-Mack, Jim; Raubeson, Linda A.; Cui, Liying; Kuehl, Jennifer V.; Fourcade, Mathew H.; Chumley, Timothy W.; Boore, Jeffrey L.; Jansen, Robert K.; dePamphilis, Claude W. (October 2005). "Identifying the basal angiosperm node in chloroplast genome phylogenies: Sampling one's way out of the Felsenstein zone". Mol. Biol. Evol. 22 (10): 1948-1963. doi:10.1093/molbev/msi191 . PMID 15944438.
Loconte, Henry; Stevenson, Dennis W. (September 1991). "Cladistics of the Magnoliidae". Cladistics. 7 (3): 267-296. doi:10.1111/j.1096-0031.1991.tb00038.x.
Patterson, T. B.; Givnish, T. J. (2002). "Phylogeny, concerted convergence, and phylogenetic niche conservatism in the core Liliales: insights from rbcL and ndhF sequence data" (PDF). Evolution. 56 (2): 233-252. doi:10.1111/j.0014-3820.2002.tb01334.x. PMID 11926492. Archived from the original on 21 Nisan 2004. Erişim tarihi: 14 Ocak 2014. KB1 bakım: Uygun olmayan url (link)
Qiu, Yin-Long; Li, Libo; Wang, Bin; Xue, Jia-Yu; Hendry, Tory A.; Li, Rui-Qi; Brown, Joseph W.; Liu, Yang; Hudson, Geordan T.; Chen, Zhi-Duan (November 2010). "Angiosperm phylogeny inferred from sequences of four mitochondrial genes". Journal of Systematics and Evolution. 48 (6): 391-425. doi:10.1111/j.1759-6831.2010.00097.x. hdl:2027.42/79100 .
Savard, L.; Strauss, S. H.; Chase, M. W.; Michaud, M.; Bosquet, J. (May 1994). "Chloroplast and nuclear gene sequences indicate late Pennsylvanian time for the last common ancestor of extant seed plants". Proceedings of the National Academy of Sciences of the United States of America. 91 (11): 5163-5167. Bibcode:1994PNAS...91.5163S. doi:10.1073/pnas.91.11.5163. PMC 43952 $2. PMID 8197201.
Soltis, Pamela S; Soltis, Douglas E (2004). "The origin and diversification of angiosperms". American Journal of Botany. 91 (10): 1614-1626. doi:10.3732/ajb.91.10.1614 . PMID 21652312. 21 Haziran 2010 tarihinde kaynağından arşivlendi. Erişim tarihi: 15 Ocak 2021.
Soltis, D. E.; Smith, S. A.; Cellinese, N.; Wurdack, K. J.; Tank, D. C.; Brockington, S. F.; Refulio-Rodriguez, N. F.; Walker, J. B.; Moore, M. J.; Carlsward, B. S.; Bell, C. D.; Latvis, M.; Crawley, S.; Black, C.; Diouf, D.; Xi, Z.; Rushworth, C. A.; Gitzendanner, M. A.; Sytsma, K. J.; Qiu, Y.-L.; Hilu, K. W.; Davis, C. C.; Sanderson, M. J.; Beaman, R. S.; Olmstead, R. G.; Judd, W. S.; Donoghue, M. J.; Soltis, P. S. (8 Nisan 2011). "Angiosperm phylogeny: 17 genes, 640 taxa". American Journal of Botany. 98 (4): 704-730. doi:10.3732/ajb.1000404. PMID 21613169. 18 Ekim 2017 tarihinde kaynağından arşivlendi. Erişim tarihi: 15 Ocak 2021.
Soltis, Pamela S; Soltis, Douglas E (April 2016). "Ancient WGD events as drivers of key innovations in angiosperms". Current Opinion in Plant Biology. 30: 159-165. doi:10.1016/j.pbi.2016.03.015 . PMID 27064530.
Trias-Blasi, Anna; Baker, William J.; Haigh, Anna L.; Simpson, David A.; Weber, Odile; Wilkin, Paul (25 Haziran 2015). "A genus-level phylogenetic linear sequence of monocots". Taxon. 64 (3): 552-581. doi:10.12705/643.9.
Zeng, Liping; Zhang, Qiang; Sun, Renran; Kong, Hongzhi; Zhang, Ning; Ma, Hong (24 Eylül 2014). "Resolution of deep angiosperm phylogeny using conserved nuclear genes and estimates of early divergence times". Nature Communications. 5 (4956): 4956. Bibcode:2014NatCo...5.4956Z. doi:10.1038/ncomms5956. PMC 4200517 $2. PMID 25249442.