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Switzerland score listed first, score column indicates score after each Shaqiri goal.
| No>  | Date | Venue | Cap | Opponent | Score | Result | Competition | Ref |
| --- | --- | --- | --- | --- | --- | --- | --- | --- |
| 1 | 7 September 2010 | St. Jakob-Park, Basel, Switzerland | 7 |  อังกฤษ | 1–2 | 1–3 | UEFA Euro 2012 qualifying |  |
| 2 | 6 September 2011 | St. Jakob-Park, Basel, Switzerland | 13 |  บัลแกเรีย | 1–1 | 3–1 | UEFA Euro 2012 qualifying |  |
| 3 | 6 September 2011 | St. Jakob-Park, Basel, Switzerland | 13 |  บัลแกเรีย | 2–1 | 3–1 | UEFA Euro 2012 qualifying |  |
| 4 | 6 September 2011 | St. Jakob-Park, Basel, Switzerland | 13 |  บัลแกเรีย | 3–1 | 3–1 | UEFA Euro 2012 qualifying |  |
| 5 | 29 February 2012 | Stade de Suisse, Bern, Switzerland | 18 |  อาร์เจนตินา | 1–1 | 1–3 | Friendly |  |
| 6 | 11 September 2012 | Swissporarena, Lucerne, Switzerland | 21 |  แอลเบเนีย | 2–0 | 2–0 | 2014 FIFA World Cup qualification |  |
| 7 | 14 November 2012 | Stade Olympique de Sousse, Sousse, Tunisia | 24 |  ตูนิเซีย | 2–1 | 2–1 | Friendly |  |
| 8 | 11 October 2013 | Qemal Stafa Stadium, Tirana, Albania | 30 |  แอลเบเนีย | 1–0 | 2–1 | 2014 FIFA World Cup qualification |  |
| 9 | 3 June 2014 | Swissporarena, Lucerne, Switzerland | 33 |  เปรู | 2–0 | 2–0 | Friendly |  |
| 10 | 25 June 2014 | Arena da Amazônia, Manaus, Brazil | 36 |  ฮอนดูรัส | 1–0 | 3–0 | 2014 FIFA World Cup |  |
| 11 | 25 June 2014 | Arena da Amazônia, Manaus, Brazil | 36 |  ฮอนดูรัส | 2–0 | 3–0 | 2014 FIFA World Cup |  |
| 12 | 25 June 2014 | Arena da Amazônia, Manaus, Brazil | 36 |  ฮอนดูรัส | 3–0 | 3–0 | 2014 FIFA World Cup |  |
| 13 | 14 October 2014 | San Marino Stadium, Serravalle, San Marino | 40 |  ซานมารีโน | 4–0 | 4–0 | UEFA Euro 2016 qualifying |  |
| 14 | 15 November 2014 | AFG Arena, St. Gallen, Switzerland | 41 |  ลิทัวเนีย | 3–0 | 4–0 | UEFA Euro 2016 qualifying |  |
| 15 | 15 November 2014 | AFG Arena, St. Gallen, Switzerland | 41 |  ลิทัวเนีย | 4–0 | 4–0 | UEFA Euro 2016 qualifying |  |
| 16 | 10 June 2015 | Stockhorn Arena, Thun, Switzerland | 45 |  ลีชเทินชไตน์ | 2–0 | 3–0 | Friendly |  |
| 17 | 14 June 2015 | LFF Stadium, Vilnius, Lithuania | 46 |  ลิทัวเนีย | 2–1 | 2–1 | UEFA Euro 2016 qualifying |  |
| 18 | 25 June 2016 | Stade Geoffroy-Guichard, Saint-Étienne, France | 57 |  โปแลนด์ | 1–1 | 1–1 | UEFA Euro 2016 |  |
| 19 | 1 June 2017 | Stade de la Maladière, Neuchâtel, Switzerland | 61 |  เบลารุส | 1–0 | 1–0 | Friendly |  |
| 20 | 9 June 2017 | Tórsvøllur, Tórshavn, Faroe Islands | 62 |  หมู่เกาะแฟโร | 2–0 | 2–0 | 2018 FIFA World Cup qualification |  |
| 21 | 22 June 2018 | Kaliningrad Stadium, Kaliningrad, Russia | 72 |  เซอร์เบีย | 2–1 | 2–1 | 2018 FIFA World Cup |  |
| 22 | 8 September 2018 | kybunpark, St. Gallen, Switzerland | 75 |  ไอซ์แลนด์ | 3–0 | 6–0 | 2018–19 UEFA Nations League A |  |
| 23 | 28 March 2021 | 88 |  ลิทัวเนีย | 1–0 | 1–0 | 2022 FIFA World Cup qualification |  |  |
| 24 | 20 June 2021 | Olympic Stadium, Baku, Azerbaijan | 94 |  ตุรกี | 2–0 | 3–1 | UEFA Euro 2020 |  |
| 25 | 20 June 2021 | Olympic Stadium, Baku, Azerbaijan | 94 |  ตุรกี | 3–1 | 3–1 | UEFA Euro 2020 |  |
| 26 | 2 July 2021 | Krestovsky Stadium, Saint Petersburg, Russia | 96 |  สเปน | 1–1 | 1–1  (ต่อเวลา) | UEFA Euro 2020 |  |