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著作

The Seven Sisters of Sleep. Popular history of the seven prevailing narcotics of the world, James Blackwood, London, 1860
A Manual of Structural Botany: for the use of classes, schools, & private students ... With upwards of 200 illustrations by Ruffle, Robert Hardwicke, London, 1861, Neuauflage 1877
A Manual of Botanic Terms ... With illustrations, Robert Hardwicke, London, 1862, new edition in 1873
The fungi of Brazil, including those collected by J. W. H. Trail in 1874, in: The Journal of the Linnean Society, Botany 1877.
A Plain and Easy Account of British Fungi: with descriptions of the esculent and poisonous species ... With twenty-four coloured plates, Robert Hardwicke, London, 1862, 6. Auflage 1898
Index Fungorum Britannicorum. A complete list of fungi found in the British Islands to the present date, etc., Robert Hardwicke, London, 1863
Our Reptiles. A plain and easy account of the lizards, snakes, newts, toads, frogs, and tortoises indigenous to Great Britain. With original figures of every species, and numerous woodcuts, Robert Hardwicke, London, 1865, Neuausgabe 1893 W.H. Allen & Co., London
Rust, smut, mildew, & mould. An introduction to the study of microscopic fungi, Robert Hardwicke, London, 1865, Neuauflage 1886
A Fern Book for Everybody. Containing all the British ferns. With the foreign species suitable for a fernery (Robert Hardwicke, London, 1867)
One Thousand Objects for the Microscope, etc., Robert Hardwicke, London, 1869, Neuauflage 1895
mit Miles Joseph Berkeley: Handbook of British Fungi, with full descriptions of all the species and illustrations of the genera, 2 Bände, Macmillan & Co., London & New York, 1871, Neuauflage 1883,  Biodiversity Library
Report on the Gums, Resins, Oleo-Resins, and Resinous Products in the India Museum, or produced in India. Prepared under the direction of the Reporter on the Products of India, London, 1874
Fungi: their nature, influence, and uses, London, 1875,  4. Auflage 1895, Neuausgabe 1920, Project Gutenberg
Report on the Oil Seeds and Oils in the India Museum, or produced in India. Prepared under the direction of the Reporter on the Products of India, London, 1876
The Woodlands, Society for Promoting Christian Knowledge, London, 1879
Mycographia, seu Icones fungorum. Figures of fungi from all parts of the world, drawn and illustrated by M. C. Cooke, Williamsz & Norgate, London, 1875 and 1879
Ponds and Ditches, Society for Promoting Christian Knowledge, London, 1880
Freaks and Marvels of Plant Life; or, Curiosities of vegetation, Society for Promoting Christian Knowledge, London, 1881
Illustrations of British Fungi... To serve as an atlas to the Handbook of British Fungi, 8 Bände, Williams & Norgate, London, 1881 bis 1891 (1200 Farbtafeln von Cooke, Massee u. a.)
British Fresh-Water Algæ. Exclusive of Desmidieæ and Diatomaceæ, etc., 2 Bände, Williams & Norgate, London, 1882–1884
British Desmids. A supplement to British Fresh-Water Algæ, etc., Williams & Norgate, London, 1887
Toilers in the Sea. A study of marine life, Society for Promoting Christian Knowledge, London, 1889
Introduction to Fresh-Water Algæ with an enumeration of all the British species ... With thirteen plates, etc., London, 1890
British Edible Fungi: how to distinguish and how to cook them, etc., Kegan Paul, Trench, Trübner & Co., London, 1891
Vegetable Wasps and Plant Worms. A popular history of entomogeneous fungi or fungi parasitic upon insects... With... illustrations, Society for Promoting Christian Knowledge, London, 1892
Romance of Low Life amongst Plants. Facts and phenomena of cryptogamic vegetation, Society for Promoting Christian Knowledge, London, 1893
Handbook of British Hepaticae, etc., W. H. Allen & Co., London, 1894
Edible and Poisonous Mushrooms, Society for Promoting Christian Knowledge, London, 1894, 2. Auflage 1902, Archive
Down the Lane and back, in search of wild flowers. By Uncle Matt, T. Nelson & Sons, London, 1895
Through the Copse. Another ramble after flowers with Uncle Matt, T. Nelson & Sons, London, 1895
Around a Cornfield, in a ramble after wild flowers. By Uncle Matt, T. Nelson & Sons, London, 1895
Across the Common, after wild flowers. By Uncle Matt, T. Nelson & Sons, London, 1895
A Stroll on a Marsh, in search of wild flowers. By Uncle Matt, T. Nelson & Sons, London, 1895
Introduction to the Study of Fungi: their organography, classification, and distribution. For the use of collectors, Adam & Charles Black, London, 1895
Object-Lesson Handbooks to accompany the Royal Portfolio of Pictures and Diagrams, T. Nelson & Sons, London, 1897–1898
Introduction to fresh water algae, K. Paul, 1902
Fungoid Pests of Cultivated Plants, Spottiswoode & Co., London, 1906