Daftar mamalia di Indonesia
Subkelas Eutheria > Ordo: Chiroptera (kelelawar)

Ciri khas kelelawar yang paling menonjol adalah bahwa kaki depan mereka berkembang menjadi sayap, menjadikan mereka satu-satunya mamalia yang mampu terbang. Spesies kelelawar mencakup sekitar 20% dari semua mamalia.
Family: Pteropodidae (kalong)
Genus: Acerodon
Kalong sulawesi, Acerodon celebensis VU
Kalong talaud, Acerodon humilis EN
Kalong sunda, Acerodon mackloti VU
Genus: Aethalops
Codot punggung-gundul, Aethalops aequalis LC
Codot kerdil, Aethalops alecto LC
Genus: Aproteles
Codot Bulmer, Aproteles bulmerae CR
Genus: Balionycteris
Codot sayap-totol, Balionycteris maculata LC
Genus: Chironax
Codot kepala-hitam, Chironax melanocephalus LC
Genus: Cynopterus
Codot krawar, C. brachyotis LC
Codot Horsfield, Cynopterus horsfieldi LC
Condot Peter, Cynopterus luzoniensis LC
Codot mungil, Cynopterus minutus LC
Codot nusatenggara, Cynopterus nusatenggara LC
Codot barong, Cynopterus sphinx LC
Codot besar, Cynopterus titthaecheileus LC
Genus: Dobsonia
Kubu Beaufort, Dobsonia beauforti LC
Kubu halmahera, Dobsonia crenulata LC
Kubu biak, Dobsonia emersa VU
Kubu sulawesi, Dobsonia exoleta LC
Kubu kecil, Dobsonia minor LC
Kubu maluku, Dobsonia moluccensis LC
Kubu nusatenggara, Dobsonia peronii LC
Kubu hijau, Dobsonia viridis LC
Genus: Dyacopterus
Kusing Brook, Dyacopterus brooksi VU
Kusing dayak, Dyacopterus spadiceus NT
Genus: Eonycteris
Lalai besar, Eonycteris major NT
Lalai kembang, Eonycteris spelaea LC
Genus: Harpyionycteris
Codot alap-alap, Harpyionycteris celebensis NT
Genus: Macroglossus
Cecadu-pisang kecil, Macroglossus minimus LC
Cecadu-pisang besar, Macroglossus sobrinus LC
Genus: Megaerops
Tungkol biasa, Megaerops ecaudatus LC
Tungkol Kusnoto, Megaerops kusnotoi VU
Tungkol kalimantan, Megaerops wetmorei VU
Genus: Neopteryx
Codot gigi-kecil, Neopteryx frosti EN
Genus: Nyctimene
Paniki besar, Nyctimene aello LC
Paniki biasa, Nyctimene albiventer LC
Paniki pallas, Nyctimene cephalotes LC
Paniki pegunungan, Nyctimene certans LC
Paniki telinga-bundar, Nyctimene cyclotis DD
Paniki kecil, Nyctimene draconilla DD
Paniki keast, Nyctimene keasti NT
Paniki sulawesi, Nyctimene minutus VU
Genus: Paranyctimene
Paniki papua, Paranyctimene raptor LC
Paniki polos besar, Paranyctimene tenax LC
Genus: Penthetor
Pentae'n coboe, Penthetor lucasi LC
Genus: Pteropus
Kalong hitam, Pteropus alecto LC
Kalong aru, Pteropus aruensis CR
Kalong kepala-kelabu, Pteropus caniceps VU
Kalong maluku, Pteropus chrysoproctus VU
Kalong kacamata, Pteropus conspicillatus EN
Kalong kelabu, Pteropus griseus VU
Kalong kecil, Pteropus hypomelanus NT
Kalong kei, Pteropus keyensis DD
Kalong lombok, Pteropus lombocensis DD
Kalong telinga-bundar, Pteropus macrotis LC
Kalong janggut-hitam, Pteropus melanopogon EN
Kalong telinga-hitam, Pteropus melanotus VU
Kalong besar, Pteropus neohibernicus LC
Kalong seram, Pteropus ocularis VU
Kalong manu, Pteropus personatus LC
Kalong manguai, Pteropus pohlei VU
Kalong laut, Pteropus speciosus DD
Kalong temminck, Pteropus temmincki DD
Kalong kapauk, Pteropus vampyrus EN
Genus: Rousettus
Nyap Geoffroy, Rousettus amplexicaudatus LC
Nyap manado, Rousettus bidens VU
Nyap sulawesi, Rousettus celebensis LC
Nyap besar, Rousettus leschenaulti NT
Nyap lindu, Rousettus linduensis DD
Nyap prapat, Rousettus spinalatus VU
Genus: Styloctenium
Codot muka-garisStyloctenium wallacei NT
Genus: Syconycteris
Codot bunga biasa, Syconycteris australis LC
Codot bunga halmahera, Syconycteris carolinae NT
Codot bunga gunung, Syconycteris hobbit LC
Genus: Thoopterus
Codot walet, Thoopterus nigrescens LC
Family Rhinopomatidae
Genus: Rhinopoma
Kelelawar ekor-tikus besar, Rhinopoma microphyllum
Family Megadermatidae (kelelawar darah palsu)
Genus: Megaderma
Kelelawar-darah palsu kecil, Megaderma spasma
Family Rhinolophidae (prok-bruk)
Genus: Rhinolophus
Prok-bruk lonkos, Rhinolophus acuminatus
Prok-bruk hutan, Rhinolophus affinis
Prok-bruk ladam, Rhinolophus arcuatus
Produk kalimantan, Rhinolophus borneensis
Prok-bruk jawa, Rhinolophus canuti
Prok-bruk sulawesi, Rhinolophus celebensis
Prok-bruk Creagh, Rhinolophus creaghi
Prok-bruk maluku, Rhinolophus euryotis
Prok-bruk kei, Rhinolophus keyensis
Prok-bruk kilau, Rhinolophus lepidus
Prok-bruk besar, Rhinolophus luctus
Prok-bruk telinga-besar, Rhinolophus macrotis
Prok-bruk madura, Rhinolophus madurensis
Prok-bruk mungil, Rhinolophus megaphyllus
Prok-bruk anamba, Rhinolophus nereis NT
Prok-bruk filipina, Rhinolophus philippinensis NT
Prok-bruk kecil, Rhinolophus pusillus LC
Prok-bruk pusang-ntung, Rhinolophus sedulus
Prok-bruk coklat kecil, Rhinolophus stheno LC
Prok-bruk tiga-daun, Rhinolophus trifoliatus LC
Family Hipposideridae
Genus: Aselliscus
Barong temminck, Aselliscus tricuspidatus LC
Genus: Coelops
Barong nirekor timur, Coelops frithii LC
Barong nirekor melayu, Coelops robinsoni VU
Genus: Hipposideros
Barong melayu, Hipposideros ater LC
Barong dwiwarna, Hipposideros bicolor LC
Barong pagai, Hipposideros breviceps VU
Barong taji, Hipposideros calcaratus LC
Barong bera, Hipposideros cervinus LC
Barong kelabu, Hipposideros cineraceus LC
Barong irian, Hipposideros corynophyllus VU
Barong timor, Hipposideros crumeniferus DD
Barong besar, Hipposideros diadema LC
Barong kalimantan, Hipposideros doriae NT
Barong dayak, Hipposideros dyacorum LC
Barong Cantor, Hipposideros galeritus LC
Barong jambul, Hipposideros inexpectatus
Barong tanggung, Hipposideros larvatus LC
Barong telinga-besar, Hipposideros macrobullatus
Barong madura, Hipposideros madurae
Barong Maggie, Hipposideros maggietaylorae
Barong sungai, Hipposideros muscinus
Barong orbikulus, Hipposideros orbiculus
Barong biak, Hipposideros papua
Barong peleng, Hipposideros pelingensis
Barong pangandaran, Hipposideros sorenseni
Barong sunda, Hipposideros sumbae
Barong wollaston, Hipposideros wollastoni
Family Emballonuridae (kelelawar sayap-pundi)
Genus: Emballonura
Kelelawar ekor-trubus timur, Emballonura alecto
Kelelawar ekor-trubus temminck, Emballonura beccarii
Kelelawar ekor-trubus besar, Emballonura furax
Kelelawar ekor-trubus kecil, Emballonura monticola
Kelelawar ekor-trubus Raffray, Emballonura raffrayana
Genus: Mosia
Kelelawar ekor-trubus hitam, Mosia nigrescens
Genus: Saccolaimus
Kubar trubus, Saccolaimus saccolaimus
Genus: Taphozous
Kubar coklat, Taphozous achates
Kubar sayap-panjang, Taphozous longimanus
Kubar janggut-hitam, Taphozous melanopogon
Kubar Theobald, Taphozous theobaldi
Family: Nycteridae (Pedan)
Genus: Nycteris
Pedan sunda, Nycteris javanica
Pedan melayu, Nycteris tragata
Family: Molossidae (tayo)
Genus: Chaerephon
Tayo jobi, Chaerephon jobensis
Tayo johor, Chaerephon johorensis
Genus: Cheiromeles
Tayo kecil, Cheiromeles parvidens
Tayo gundul, Cheiromeles torquatus
Genus: Mops
Tayo melayu, Mops mops
Tayo sulawesi, Mops sarasinorum
Genus: Mormopterus
Tayo Beccari, Mormopterus beccarii
Tayo sumatra, Mormopterus doriae
Genus: Otomops
Otomop jawa, Otomops formosus
Otomop alor, Otomops johnstonei
Family Vespertilionidae (vesper bats)
Genus: Arielulus
Sekiwen sepuhan, Arielulus circumdatus
Sekiwen sabah, Arielulus cuprosus
Genus: Falsistrellus
Sekiwen jamur, Falsistrellus mordax
Sekiwen peter, Falsistrellus petersi
Genus: Glischropus
Kesindap jawa, Glischropus javanus
Kesindap biasa, Glischropus tylopus
Genus: Harpiocephalus
Kesindap kecil, Harpiocephalus harpia
Genus: Hesperoptenus
Kesindap Blanford, Hesperoptenus blanfordi
Kesindap sulawesi, Hesperoptenus doriae
Kesindap Gaskell, Hesperoptenus gaskelli
Kesindap besar, Hesperoptenus tomesi
Genus: Hypsugo
Sekiwen coklat, Hypsugo imbricatus
Sekiwen kalimantan, Hypsugo kitcheneri
Sekiwen sumatra, Hypsugo macrotis
Sekiwen Vonderman, Hypsugo vordermanni
Genus: Kerivoula
Lenawai hutan, Kerivoula flora
Lenawai Hardwick, Kerivoula hardwickii
Lenawai sabah, Kerivoula intermedia
Lenawai gerenjal, Kerivoula papillosa
Lenawai sayap-terawang, Kerivoula pellucida
Lenawai kembang, Kerivoula picta
Lenawai sutra, Kerivoula whiteheadi
Genus: Miniopterus
Tomosu kecil, Miniopterus australis
Tomosu melanesia,Miniopterus macrocneme
Tomosu besar, Miniopterus magnater
Tomosu jawa, Miniopterus medius
Tomosu filipina, Miniopterus paululus
Tomosu dani, Miniopterus pusillus
Tomosu biasa, M. schreibersii VU
Tomosu Shortridge, Miniopterus shortridgei
Tomosu besar, Miniopterus tristis
Genus: Murina
Pungit kalimantan, Murina aenea
Pungit tumpul, Murina cyclotis
Pungit flores, Murina florium
Pungit Rozendal, Murina rozendaali
Pungit coklat, Murina suilla
Genus: Myotis
Lasiwen kaki-besar, Myotis adversus
Lasiwen hitam, Myotis ater
Lasiwen Hodgson, M. formosus LC
Lasiwen Hasselt, Myotis hasseltii
Lasiwen Herman, Myotis hermani
Lasiwen deignan, Myotis horsfieldii
Lasiwen filipina, Myotis macrotarsus
Lasiwen maluku, Myotis moluccarum
Lasiwen jambang, Myotis montivagus
Lasiwen biasa, Myotis muricola
Lasiwen Ridley, Myotis ridleyi
Lasiwen himalaya, Myotis siligorensis
Lasiwen kei, Myotis stalkeri
Genus: Nyctophilus
Sekiwen lembata, Nyctophilus heran
Sekiwen timor, Nyctophilus timoriensis
Genus: Philetor
Kelelawar rohu, Philetor brachypterus
Genus: Phoniscus
Lenawai gigi alur, Phoniscus atrox
Lenawai terompet, Phoniscus jagorii
Lenawai emas, Phoniscus papuensis
Genus: Pipistrellus
Sekiwen papua, Pipistrellus angulatus
Sekiwen gunung, Pipistrellus ceylonicus
Sekiwen jawa, Pipistrellus javanicus
Sekiwen minahasa, Pipistrellus minahassae
Sekiwen irian, Pipistrellus papuanus
Sekiwen noktul, Pipistrellus stenopterus
Sekiwen kecil, Pipistrellus tenuis
Genus: Scotophilus
Pedan sulawesi, Scotophilus celebensis
Pedan kuning, Scotophilus collinus
Pedan kecil, Scotophilus kuhlii
Genus: Scotorepens
Kelelawar babi, Scotorepens sanborni
Genus: Tylonycteris
Kekeki kecil, Tylonycteris pachypus
Kekeki besar, Tylonycteris robustula