Piala UEFA 2006–2007
Babak kualifikasi > Second qualifying round

These matches were held on 8 and 10 August (first leg) and 24 August (second leg) 2006.
| Tim 1 | Agregat | Tim 2 | Leg 1 | Leg 2 | Southern-Mediterranean region | Southern-Mediterranean region | Southern-Mediterranean region | Southern-Mediterranean region | Southern-Mediterranean region |
| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |
| APOEL  | 1–2 |  Trabzonspor | 1–1 | 0–1 |  |  |  |  |  |
| Hapoel Tel Aviv1  | 4–2 |  Domžale | 1–2 | 3–0 |  |  |  |  |  |
| CSKA Sofia  | 1–1 (a) |  Hajduk Kula2 | 0–0 | 1–1(aet) |  |  |  |  |  |
| Roeselare  | 2–6 |  Ethnikos Achna | 2–1 | 0–5 |  |  |  |  |  |
| OFK Beograd2  | 2–5 |  Auxerre | 1–0 | 1–5 |  |  |  |  |  |
| Dinamo Bucureşti  | 2–1 |  Beitar Jerusalem1 | 1–0 | 1–1 |  |  |  |  |  |
| Partizan2  | 3–2 |  Maribor | 2–1 | 1–1 |  |  |  |  |  |
| Sarajevo  | 1–2 |  Rapid Bucureşti | 1–0 | 0–2 |  |  |  |  |  |
| Bnei Yehuda Tel Aviv1  | 0–6 |  Lokomotiv Sofia | 0–2 | 0–4 |  |  |  |  |  |
| Omonia  | 1–2 |  Litex Lovech | 0–0 | 1–2 |  |  |  |  |  |
| Tirana  | 1–5 |  Kayserispor | 0–2 | 1–3 |  |  |  |  |  |
| Central-East region | Central-East region | Central-East region | Central-East region | Central-East region |  |  |  |  |  |
| Artmedia  | 5–3 |  Dinamo Minsk | 2–1 | 3–2 |  |  |  |  |  |
| Ried  | 0–1 |  Sion | 0–0 | 0–1 |  |  |  |  |  |
| Videoton  | 1–3 |  Grasshoppers | 1–1 | 0–2 |  |  |  |  |  |
| Karvan  | 0–2 |  Slavia Prague | 0–2 | 0–0 |  |  |  |  |  |
| Chornomorets Odessa  | 1–1 (a) |  Wisła Płock | 0–0 | 1–1 |  |  |  |  |  |
| Basel  | 2–2 (a) |  Vaduz | 1–0 | 1–2 |  |  |  |  |  |
| Zimbru Chişinău  | 0–3 |  Metalurh Zaporizhya | 0–0 | 0–3 |  |  |  |  |  |
| Mattersburg  | 1–2 |  Wisła Kraków | 1–1 | 0–1 |  |  |  |  |  |
| Hertha BSC  | 3–2 |  Ameri Tbilisi | 1–0 | 2–2 |  |  |  |  |  |
| Rubin Kazan  | 5–0 |  BATE | 3–0 | 2–0 |  |  |  |  |  |
| Young Boys  | 3–3 (a) |  Marseille | 3–3 | 0–0 |  |  |  |  |  |
| Northern region | Northern region | Northern region | Northern region | Northern region |  |  |  |  |  |
| Start  | 1–1 (11–10 p) |  Drogheda United | 1–0 | 0–1(aet) |  |  |  |  |  |
| Odense  | 6–1 |  Llanelli | 1–0 | 5–1 |  |  |  |  |  |
| Randers  | 3–2 |  Kaunas | 3–1 | 0–1 |  |  |  |  |  |
| Twente  | 1–2 |  Levadia Tallinn | 1–1 | 0–1 |  |  |  |  |  |
| Ventspils  | 0–1 |  Newcastle United | 0–1 | 0–0 |  |  |  |  |  |
| Brann  | 4–4 (a) |  Åtvidaberg | 3–3 | 1–1 |  |  |  |  |  |
| Molde  | 2–1 |  Skonto | 0–0 | 2–1 |  |  |  |  |  |
| Flora Tallinn  | 0–4 |  Brøndby | 0–0 | 0–4 |  |  |  |  |  |
| Sūduva  | 2–7 |  Club Brugge | 0–2 | 2–5 |  |  |  |  |  |
| Gretna  | 3–7 |  Derry City3 | 1–5 | 2–2 |  |  |  |  |  |
1Due to the armed conflict going on in Israel, UEFA decided that no European matches could be staged in the country until further notice. Hapoel Tel Aviv's home match was moved to Tilburg, Netherlands, Beitar Jerusalem's to Sofia, Bulgaria and Bnei Yehuda Tel Aviv's to Senec, Slowakia
2These clubs qualified for this season's UEFA competitions as members of the Football Association of Serbia and Montenegro during the 2005–06 season but are currently members of the Football Association of Serbia which is the official successor of the previous football association.
3Derry City are a team from Northern Ireland who play in the Republic of Ireland's football league. The flag of the Republic of Ireland is used for the purposes of official records as Derry City are a team representing the Football Association of Ireland.