Conditions: Hypophosphatasia
Keywords: HPP asfotase alfa
Allocation: RANDOMIZED | Intervention model: PARALLEL
Enrollment: 27
Healthy volunteers: no

Brief summary:
The purpose of this study was to evaluate the pharmacokinetics (PK) and pharmacodynamics (PD) of asfotase alfa in adult participants with pediatric-onset HPP.

Detailed description:

Arms:
arm 1: Participants received 0.5 milligrams (mg) per kilogram (kg) of asfotase alfa administered subcutaneously (SC) 3 times a week from Weeks 3 through 9 following the initial single dose on Day 1 in Week 1. arm 2: Participants received 2.0 mg/kg of asfotase alfa administered SC 3 times a week from Weeks 3 through 9 following the initial single dose on Day 1 in Week 1. arm 3: Participants received 3.0 mg/kg of asfotase alfa administered SC 3 times a week from Weeks 3 through 9 following the initial single dose on Day 1 in Week 1.

Interventions: intervention 1: Asfotase alfa
Intervention descriptions: intervention 1: None

Protocol document:
Prot_000.pdf: 
A Phase2A, Randomized, Multicenter, Open-label 
Pharmacokinetic, and Dose Response Study of Asfotase Alfa 
in Adult Patients with Pediatric-onset Hypophosphatasia 
 
 
Unique Protocol ID: 
AA-HPP-208 
NCT Number: 
NCT02797821 
EudraCT Number:  
2015-003131-35 
Date of Protocol:  
16 November 2015 
 


Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
PROTOCOL AA-HPP-208 
A PHASE 2A, RANDOMIZED, MULTICENTER, OPEN-LABEL, 
PHARMACOKINETIC, AND DOSE RESPONSE STUDY OF ASFOTASE 
ALFA IN ADULT PATIENTS WITH PEDIATRIC-ONSET 
HYPOPHOSPHATASIA 
 
Sponsor:  
Alexion Pharma GmbH (Alexion)  
Giesshübelstrasse 30 
CH – 8045 Zürich, Switzerland 
Telephone: 
 
Fax: 
 
 
Sponsor Contact: 
 
 
Alexion Pharmaceuticals Inc.  
55 Cambridge Parkway, Suite 800 
Cambridge, MA 02142 USA 
Telephone: 
 
Telephone (mobile): 
 
E-mail: 
 
 
Medical Monitor: 
 
 
Alexion Pharmaceuticals Inc.  
352 Knotter Drive 
Cheshire, CT 06410 USA 
Telephone: 
 
Telephone (mobile): 
 
E-mail: 
 
 
IND No.: 
100,619 
EudraCT No.: 
2015-003131-35 
 
Date:  
 
 
 
 
16 November 2015 
 
This protocol contains confidential information and is provided for exclusive use of Investigators.  This information 
may only be disclosed to those persons involved in this study who have a need to know with the obligation not to 
further disseminate this information.  This information may not be disclosed to other individuals unless such 
disclosure is required by federal or state law or regulations subject to the foregoing.  These restrictions on disclosure 
will apply equally to all future oral or written information supplied to you by Alexion which is designated as 
“privileged” or “confidential.” 
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
INVESTIGATOR’S AGREEMENT 
 
PROTOCOL TITLE:  A Phase 2a Randomized, Multi-center, Open-Label, 
Pharmacokinetic, and Dose Response Study of Asfotase Alfa in Adult Patients with 
Pediatric-Onset Hypophosphatasia 
 
PROTOCOL NUMBER:  AA-HPP-208 
 
I have received and read the current Investigator’s Brochure for asfotase alfa. I have read the 
AA-HPP-208 Clinical Study Protocol and agree to conduct the study in accordance with this 
protocol, all applicable government regulations, the principles of the International Council on 
Harmonisation (ICH) E6 Guidelines for Good Clinical Practice (GCP), and the principles of the 
World Medical Association Declaration of Helsinki. I also agree to maintain the confidentiality 
of all information received or developed in connection with this protocol. 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Printed Name of Investigator 
 
 
 
 
 
 
 
 
 
 
 
 
 
 
Signature of Investigator 
 
 
 
 
 
 
 
 
Date 
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
PROCEDURES IN CASE OF EMERGENCY 
 
Table 1: 
Emergency Contact Information 
Role in Study 
Name 
Address and Telephone Number 
Clinical Project Lead 
 
Alexion Pharmaceuticals Inc. 
55 Cambridge Parkway, Suite 800 
Cambridge, MA 02142 USA 
Telephone: 
 
Telephone (mobile): 
 
E-mail: 
 
Medical Monitor  
(24-Hour emergency contact) 
 
Alexion Pharmaceuticals Inc. 
352 Knotter Drive 
Cheshire, CT 06410 USA 
Telephone: 
 
Telephone (mobile): 
 
E-mail: 
 
Drug Safety Physician 
 
Alexion Pharmaceuticals Inc. 
55 Cambridge Parkway, Suite 800  
Cambridge, MA 02142 USA  
Telephone: 
 
Telephone (mobile): 
 
Facsimile: 
 
E-mail: 
 
24-Hour Serious Adverse Event Contact 
Email: 
 
*Facsimile: 
 
* Facsimile number is provided as a back-up/contingency for the site to report the serious adverse event in case the 
site is unable to send the report via email. 
 
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
1. 
SYNOPSIS 
Name of Sponsor/Company: Alexion Pharma GmbH (Alexion) 
Name of Investigational Product: asfotase alfa 
Name of Active Ingredient: Human recombinant tissue-nonspecific alkaline phosphatase fusion protein 
Title of Study: A Phase 2a Randomized, Multi-center, Open-Label, Pharmacokinetic, and Dose Response Study 
of Asfotase Alfa in Adult Patients with Pediatric-Onset Hypophosphatasia 
Study center(s): To be determined 
Studied Period: 13.5 Weeks 
Estimated date first patient enrolled: Q1 2016 
Estimated date first patient completed: Q2 2016 
Phase of Development: 2a 
Objectives:  
UPrimary Objective 
The primary objective of this study is to evaluate the pharmacokinetics (PK) and pharmacodynamics (PD) of 
asfotase alfa following administration of a range of dose regimens that encompasses the dose proven to be 
effective in children (6.0 mg/kg/week) in adult patients with pediatric-onset hypophosphatasia (HPP). 
USecondary Objective 
The secondary objective of this study is to evaluate the safety and tolerability of asfotase alfa in adult patients 
with pediatric-onset HPP. 
Methodology: 
Study AA-HPP-208 is a multicenter, randomized, open-label, PK, and PD dose response Phase 2a study of 
asfotase alfa in adult patients with pediatric-onset HPP. 
Approximately 27 patients who meet eligibility criteria for study participation will be randomized to 1 of the 
following 3 cohorts, with the aim of having at least 6 patients in each cohort completing the study: 
1. 0.5 mg/kg initial single dose; multiple dosing starting after 2 weeks at 0.5 mg/kg 3 times per week  
2. 2.0 mg/kg initial single dose; multiple dosing starting after 2 weeks at 2.0 mg/kg 3 times per week  
3. 3.0 mg/kg initial single dose; multiple dosing starting after 2 weeks at 3.0 mg/kg 3 times per week  
Randomization will be stratified by gender to ensure a similar distribution of gender in each cohort. 
Patients will receive a single dose on Week 1, Day 1. On Week 3, Day 1 patients will start multiple dosing with 
the 3 times per week regimen (2 weeks after receiving the single dose). 
Safety, PK, and PD assessments will be performed at Baseline and at scheduled visits throughout the study. 
Patients may be asked to provide additional blood samples at an unscheduled visit at the request of the Sponsor 
or Investigator as part of a safety evaluation or for adjustment of the drug dose due to a safety concern. Adverse 
events (AEs) and concomitant medications/therapies will be monitored continuously throughout the study. 
Number of Patients Planned:  
Screened: 36  
Randomized: 27  
Completed: 18 (minimum) 
Diagnosis and Main Criteria for Inclusion: 
Men and non-pregnant women aged ≥18 years with a confirmed diagnosis of pediatric-onset HPP. 
In addition, eligible patients will have either documented tissue-nonspecific alkaline phosphatase (TNSALP) 
gene mutation(s) or Screening assessments demonstrating both alkaline phosphatase (ALP) below normal and 
pyridoxal-5′-phosphate (PLP) above normal, and have not received asfotase alfa in the 3 years prior to this 
study  
Investigational Product, Dosage and Mode of Administration:  
Asfotase alfa: 
• 
0.5 mg/kg (initial single dose); multiple dosing starting after 2 weeks at 0.5 mg/kg 3 times per week, 
given as subcutaneous (SC) injections  
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
• 
2.0 mg/kg (initial single dose); multiple dosing starting after 2 weeks at 2.0 mg/kg 3 times per week, 
given as SC injections 
• 
3.0 mg/kg (initial single dose); multiple dosing starting after 2 weeks at 3.0 mg/kg 3 times per week, 
given as SC injections  
Individual dose injections are limited by volume to 1.0 mL; those patients whose calculated dose, based on the 
3 times per week regimen, exceeds 1.0 mL will require multiple injections per dose.  
Duration of Treatment Period:  
13.5 weeks: 1 week of run-in, 9 weeks of dosing, and 3.5 weeks of wash-out for immunogenicity assessment 
Reference therapy, dosage and mode of administration: 
Not applicable  
Criteria for evaluation: 
UPharmacokinetics: 
Blood samples will be drawn at selected timepoints to assess asfotase alfa activity in serum.  
UEfficacy/PharmacodynamicsU:  
Blood samples will be drawn at selected timepoints to assess the effect of treatment on PPi and PLP levels. The 
change from Baseline in PPi and PLP will be evaluated.  
USafety: 
Adverse events (includes serious adverse events [SAEs], injection site reactions [ISRs], injection associated 
reactions [IARs]), laboratory tests (clinical chemistry, hematology, and urinalysis), vital signs, physical 
examination, renal ultrasound, ophthalmology assessment, and urine pregnancy tests (for women of 
childbearing potential only). Anti-drug antibodies (ADA) and neutralizing antibodies (NAb) will also be 
assessed. 
Statistical methods: 
All data collected in this study will be documented using summary tables, figures, and data listings. For 
categorical variables, frequencies and percentages will be presented. For continuous variables, descriptive 
statistics (n, mean, median, standard deviation [SD], minimum, and maximum) will be presented. Descriptive 
statistics for PK parameters will include the number of observations, mean, SD, coefficient of variation (CV), 
median, minimum, maximum, geometric mean, and geometric %CV. 
Efficacy analyses will be conducted on the Full Analysis Set (FAS), consisting of all treated patients with a pre-
dose and at least 1 post-dose PPi level. Safety analyses will be conducted on the Safety Set, consisting of all 
patients who received at least 1 dose of asfotase alfa. Pharmacokinetic analyses will be conducted on the PK 
Population, consisting of all treated patients for whom the PK profile can be adequately characterized. 
A sample size of 9 patients per cohort (27 patients total) will provide sufficient power (>80%) to detect a 
difference of 2.3 µM between cohorts in the change from Baseline to pre-3Prd
P dose in Week 9 PPi, assuming a SD 
of 1.5 µM and 2-sided, 2-sample t-test analyzed using a fixed sequence testing procedure. A sample size of 
6 patients per cohort (18 patients total) will provide sufficient power (>90%) to detect a difference of 3.2 µM 
using the same assumptions. A mean difference of 3.2 µM (SD 1.5 µM) was observed in adult pediatric-onset 
treated patients versus controls in Study ENB-009-10 for the change from Baseline to Week 6 in PPi. Between 
6 and 9 patients per cohort (18 and 27 patients total) will give sufficient power to detect a mean difference of 
2.3 to 3.2 µM (SD 1.5 µM). 
Efficacy/Pharmacodynamics:  
The primary endpoint, PPi change from Baseline to pre-3Prd
P dose in Week 9, will be analyzed using a Wilcoxon 
rank-sum test. A fixed sequence testing procedure will be performed with the comparison of the 9.0 mg/kg/week 
cohort compared to the 1.5 mg/kg/week cohort being performed first, and the hypothesis testing for the second 
comparison 6.0 mg/kg/week cohort compared to the 1.5 mg/kg/week cohort only being performed if the null 
hypothesis is rejected for the previous comparison at a significance level of 0.05. The primary endpoint will be 
met if the null hypothesis is rejected for both comparisons at a significance level of 0.05. Additionally, the shift 
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
in the distributions and 95% confidence interval (CI) for the above comparisons will be reported using the 
Hodges-Lehmann-Sen estimate and the exact confidence limits reported.  
As secondary analyses, descriptive statistics for the absolute levels and the change from Baseline in PPi will be 
summarized at all study timepoints by cohort. Within cohort, the change from Baseline to all study timepoints 
will be analyzed using the Wilcoxon signed-rank test. 
Finally, a restricted maximum likelihood (REML)-based repeated measures mixed model will be fitted to 
estimate the change from Baseline in PPi at each pre-dose timepoint and test whether the change differs from zero 
at each timepoint. The analysis will include the fixed, categorical effect of visit. The estimate of change from 
Baseline at defined visits will be provided, along with 95% CIs and p-values. The treatment effect will also be 
explored. 
For the secondary endpoint, change from Baseline to pre-3Prd
P dose in Week 9 in PLP, similar methods as for PPi 
will be used for analysis.  
Individual and mean (±SD) plasma PPi and PLP concentration versus time data will be presented graphically by 
cohort. Additional analysis of the PD data may be performed if considered useful.  
Pharmacokinetics:  
Mean serum asfotase alfa concentrations versus nominal time and individual serum asfotase alfa concentrations 
versus actual time will be graphically presented. The individual serum concentration data for asfotase alfa-treated 
patients, with actual sampling dates and times, will be used to derive the PK parameters by non-compartmental 
analyses using WinNonlin® 5.3 (or higher) (Certara, L.P., 1699 S Hanley Road, St Louis MO 63144 USA). The 
following PK parameters will be calculated using non-compartmental methods: maximum observed serum 
asfotase alfa concentration (CRmax
R), time at which CRmax
R is observed (tRmax
R), area-under-the-concentration-time curve 
from time zero to the time of the last observed concentration (AUCRt
R), area-under-the-concentration-time curve 
from time zero to infinity (AUCR∞
R), elimination rate constant (kRe
R), and half-life (tR½
R). Additional PK parameters 
may be calculated, as appropriate. An attainment of asfotase alfa PK steady state will be evaluated. Dose 
proportionality and time linearity assessment may be considered. PK-PD relationships may be explored. 
Additional PK-PD analyses may be considered if deemed useful.    
Safety:  
The incidence of treatment-emergent adverse events (TEAEs) and serious adverse events (SAEs) will be 
summarized by System Organ Class (SOC) and Preferred Term (PT) overall, by severity, and by relationship to 
study drug. Changes from Baseline in vital signs, laboratory assessments (chemistry, hematology, and urinalysis) 
will be summarized. Shifts from Baseline in laboratory assessments as well as physical examination, renal 
ultrasound, and ophthalmology findings will be summarized for all study visits. Immunogenicity data will be 
tabulated and summarized. 
 
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
2. 
TABLE OF CONTENTS, LIST OF TABLES, AND LIST OF 
FIGURES 
TABLE OF CONTENTS 
PROTOCOL AA-HPP-208 ..............................................................................................................1 
A PHASE 2A, RANDOMIZED, MULTICENTER, OPEN-LABEL, 
PHARMACOKINETIC, AND DOSE RESPONSE STUDY OF ASFOTASE 
ALFA IN ADULT PATIENTS WITH PEDIATRIC-ONSET 
HYPOPHOSPHATASIA .............................................................................................1 
SPONSOR SIGNATURE PAGE ....................................................................................................2 
INVESTIGATOR’S AGREEMENT ...............................................................................................3 
1. 
SYNOPSIS ...................................................................................................................5 
2. 
TABLE OF CONTENTS, LIST OF TABLES, AND LIST OF FIGURES .................8 
3. 
LIST OF ABBREVIATIONS AND DEFINITIONS OF TERMS.............................14 
4. 
INTRODUCTION ......................................................................................................16 
5. 
OBJECTIVES .............................................................................................................18 
5.1. 
Primary Objective .......................................................................................................18 
5.2. 
Secondary Objectives .................................................................................................18 
6. 
INVESTIGATIONAL PLAN .....................................................................................19 
6.1. 
Overall Study Design ..................................................................................................19 
6.2. 
Assessments ................................................................................................................21 
7. 
STUDY POPULATION .............................................................................................27 
7.1. 
Inclusion Criteria ........................................................................................................27 
7.2. 
Exclusion Criteria .......................................................................................................28 
7.3. 
Discontinuations .........................................................................................................29 
7.3.1. 
Discontinuation of Patients .........................................................................................29 
7.3.2. 
Discontinuation of Study Sites ...................................................................................30 
7.3.3. 
Discontinuation of Study ............................................................................................30 
8. 
TREATMENT ............................................................................................................31 
8.1. 
Treatments Administered ............................................................................................31 
8.2. 
Clinical Study Materials and Supplies ........................................................................31 
8.3. 
Method of Assignment to Treatment ..........................................................................32 
8.4. 
Rationale for Selection of Doses in the Study ............................................................33 
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16 November 2015 
8.5. 
Selection and Timing of Doses ...................................................................................33 
8.6. 
Blinding and Unblinding ............................................................................................33 
8.7. 
Concomitant Medication/Therapy ..............................................................................34 
8.8. 
Treatment Compliance ................................................................................................34 
9. 
PHARMACOKINETIC AND PHARMACODYNAMIC ASSESSMENTS, 
SAFETY EVALUATIONS, SAMPLE COLLECTION AND TESTING, 
AND APPROPRIATENESS OF MEASUREMENTS ..............................................35 
9.1. 
Pharmacokinetic Assessments ....................................................................................35 
9.1.1. 
Asfotase Alfa Activity ................................................................................................35 
9.2. 
Efficacy/Pharmacodynamic Assessments ..................................................................35 
9.2.1. 
Plasma Inorganic Pyrophosphate and Plasma Pyridoxal-5’ Phosphate ......................35 
9.3. 
Safety Assessments .....................................................................................................35 
9.3.1. 
Physical Examinations ................................................................................................35 
9.3.2. 
Vital Signs ..................................................................................................................36 
9.3.3. 
Serum Chemistry, Hematology, and Urinalysis .........................................................36 
9.3.4. 
Ophthalmology Assessments ......................................................................................36 
9.3.5. 
Renal Ultrasound ........................................................................................................37 
9.4. 
Safety Evaluations ......................................................................................................37 
9.4.1. 
Adverse Event .............................................................................................................37 
9.4.1.1. 
Medical Procedures ....................................................................................................37 
9.4.1.2. 
Abnormal Test Findings .............................................................................................38 
9.4.1.3. 
Lack of Efficacy .........................................................................................................38 
9.4.1.4. 
Recording Adverse Events .........................................................................................38 
9.4.1.5. 
Expectedness Assessment of Adverse Events ............................................................39 
9.4.1.6. 
Serious Adverse Events ..............................................................................................39 
9.4.1.7. 
Severity Assessments ..................................................................................................40 
9.4.1.8. 
Causality Assessment .................................................................................................41 
9.4.1.9. 
Adverse Event Outcome .............................................................................................41 
9.4.1.10. 
Exposure During Pregnancy and/or Lactation ............................................................42 
9.4.1.11. 
Reporting of Adverse Event(s) and Serious Adverse Event(s) to the Sponsor ..........42 
9.4.1.12. 
Blinded studies ............................................................................................................43 
9.4.1.13. 
Sponsor Reporting Requirements ...............................................................................43 
9.4.1.14. 
Investigator Reporting Requirements .........................................................................43 
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16 November 2015 
9.4.2. 
Other Safety Measures ................................................................................................43 
9.4.2.1. 
Injection-Related Adverse Events ..............................................................................43 
9.4.2.2. 
Anti-Drug Antibodies .................................................................................................45 
9.4.2.3. 
Pregnancy and Breastfeeding .....................................................................................45 
9.5. 
Sample Collection and Testing ...................................................................................45 
9.5.1. 
Samples for Study Qualification and Health Monitoring ...........................................46 
9.5.2. 
Samples for Immunogenicity ......................................................................................46 
9.5.3. 
Samples for Drug Concentration Measurements ........................................................46 
9.6. 
Appropriateness of Measurements .............................................................................46 
10. 
DATA QUALITY ASSURANCE ..............................................................................47 
10.1. 
Data Capture System ..................................................................................................47 
11. 
STATISTICS ..............................................................................................................48 
11.1. 
Analysis Populations ..................................................................................................48 
11.1.1. 
Full Analysis Set .........................................................................................................48 
11.1.2. 
Per Protocol Set ..........................................................................................................48 
11.1.3. 
Safety Set ....................................................................................................................49 
11.1.4. 
Pharmacokinetic Population .......................................................................................49 
11.2. 
Efficacy/Pharmacodynamic Endpoints .......................................................................49 
11.2.1. 
Primary Efficacy/Pharmacodynamic Endpoint ..........................................................49 
11.2.2. 
Secondary Efficacy/Pharmacodynamic Endpoints .....................................................49 
11.3. 
Pharmacokinetics ........................................................................................................49 
11.4. 
Safety Endpoints .........................................................................................................50 
11.5. 
Statistical Methods ......................................................................................................50 
11.5.1. 
Handling of Dropouts/Missing Data ...........................................................................50 
11.5.2. 
Demographics and Baseline Characteristics ...............................................................50 
11.5.3. 
Patient Accountability ................................................................................................51 
11.5.4. 
Efficacy/ Pharmacodynamic/ Analyses ......................................................................51 
11.5.4.1. 
Primary Efficacy/Pharmacodynamic Endpoint ..........................................................51 
11.5.4.2. 
Secondary Efficacy/Pharmacodynamic Endpoints .....................................................52 
11.5.5. 
Statistical Methods: Pharmacokinetics Analysis ........................................................52 
11.5.6. 
Statistical Methods: Safety Variables .........................................................................52 
11.5.6.1. 
Safety Variable: Adverse Events ................................................................................52 
11.5.6.2. 
Safety Variable: Injection-Associated Reactions .......................................................52 
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11.5.6.3. 
Safety Variable: Injection Site Reactions ...................................................................52 
11.5.6.4. 
Safety Variable: Laboratory Tests Including Clinical Hematology, 
Chemistry, and Urinalysis ..........................................................................................53 
11.5.6.5. 
Safety Variable: Asfotase Alfa Anti-drug Antibody ..................................................53 
11.5.6.6. 
Safety Variables: Vital Signs, Physical Examinations, Renal Ultrasounds, 
and Ophthalmology Assessments ...............................................................................53 
11.5.7. 
Statistical Methods: Study Drug Administration ........................................................53 
11.5.8. 
Statistical Methods: Power and Sample Size ..............................................................53 
11.5.9. 
Statistical Methods: Multiplicity ................................................................................54 
12. 
INFORMED CONSENT, ETHICAL REVIEW, AND REGULATORY 
CONSIDERATIONS ..................................................................................................55 
12.1. 
Informed Consent .......................................................................................................55 
12.2. 
Ethical Review ............................................................................................................55 
12.3. 
Regulatory Considerations ..........................................................................................55 
12.3.1. 
Investigator Information .............................................................................................56 
12.3.2. 
Protocol Signatures .....................................................................................................56 
12.3.3. 
Final Clinical Study Report Signature ........................................................................56 
12.4. 
Publication Policy .......................................................................................................56 
13. 
LIST OF REFERENCES ............................................................................................57 
14. 
APPENDICES ............................................................................................................58 
14.1. 
Study AA-HPP-208: Clinical Laboratory Tests .........................................................58 
14.2. 
Study AA-HPP-208: Sampling Summary ..................................................................59 
 
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16 November 2015 
LIST OF TABLES 
Table 1: 
Emergency Contact Information ...................................................................................4 
Table 2: 
Schedule of Events .....................................................................................................22 
Table 3: 
Schedule of Events – Pharmacokinetic, Pharmacodynamic, and 
Immunogenicity Assessments ....................................................................................25 
Table 4: 
Treatment Regimens ...................................................................................................31 
Table 5: 
Summary of Vial Concentrations and Extractable Volumes ......................................31 
 
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Alexion Pharma GmbH (Alexion) 
16 November 2015 
LIST OF FIGURES 
Figure 1: 
Protocol AA-HPP-208 Study Design .........................................................................20 
 
  
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
3. 
LIST OF ABBREVIATIONS AND DEFINITIONS OF TERMS 
The following abbreviations and specialist terms are used in this study protocol. 
Abbreviation  
Definition 
ADA 
anti-drug antibodies 
AE 
adverse event 
AIC 
Akaike's information criterion 
ALP 
alkaline phosphatase 
ALT 
alanine aminotransferase 
AST 
aspartate aminotransferase 
AUCt 
area-under-the-concentration-time curve from time zero to the time of 
the last observed concentration 
AUC∞ 
area-under-the-concentration-time curve from time zero to infinity 
Β-hCG 
human chorionic gonadotropin, beta subunit 
BUN 
blood urea nitrogen 
Cmax 
maximum observed serum concentration 
CI 
confidence interval 
CIOMS 
Council for International Organizations of Medical Sciences 
CV 
coefficient of variation 
eCRF 
electronic case report form 
ePRO 
electronic patient-reported outcome 
EDC 
electronic data capture 
EOS 
end of study 
FAS 
full analysis set 
F/U 
follow-up 
GCP 
Good Clinical Practice 
HPP 
hypophosphatasia 
IAR 
injection-associated reaction 
IB 
Investigator’s brochure 
ICF 
informed consent form 
ICH 
International Council on Harmonisation 
IEC 
independent ethics committee 
Ig 
immunoglobulin 
IRB 
institutional review board 
ISR 
injection site reaction 
IXRS 
interactive voice-/web-response system 
Ke 
elimination rate constant 
mmHg 
millimeters of mercury 
nAb 
neutralizing antibodies 
PD 
pharmacodynamics 
PDA 
personal digital assistant 
PEA 
phosphoethanolamine 
PK 
pharmacokinetics 
PLP 
pyridoxal-5′-phosphate 
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Alexion Pharma GmbH (Alexion) 
16 November 2015 
Abbreviation  
Definition 
PP 
per protocol 
PPi 
inorganic pyrophosphate 
PRO 
patient-reported outcome 
PT 
Preferred Term 
PTH 
parathyroid hormone 
REB 
Research Ethics Board 
REML 
restricted maximum likelihood 
SAE 
serious adverse event 
SC 
subcutaneous(ly) 
SOC 
System Organ Class 
SOM 
study operations manual 
SOP 
standard operating procedures 
SD 
standard deviation 
SUSAR 
suspected unexpected serious adverse reactions 
t1/2 
half-life 
Tmax 
time of maximum observed serum concentration 
TEAE 
treatment-emergent adverse event 
TNSALP 
tissue-nonspecific alkaline phosphatase 
TPO 
third party organization 
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
16 November 2015 
4. 
INTRODUCTION 
Hypophosphatasia (HPP) is a rare metabolic bone disease caused by loss of function mutation(s) 
in the gene encoding tissue-nonspecific alkaline phosphatase (TNSALP) (Whyte 2013), resulting 
in defective bone mineralization and impaired phosphate and calcium regulation. 
Hypophosphatasia is characterized by interdependent clinical manifestations emanating from a 
failure to mineralize bone matrix. Extracellular accumulation of the TNSALP substrate, 
inorganic pyrophosphate (PPi), functionally impairs skeletal mineralization. Elevations in 
extracellular PPi inhibit bone mineralization by blocking hydroxyapatite crystal formation, 
causing a pronounced accumulation of unmineralized bone matrix. Failure to mineralize bone 
matrix in adults results in diverse complications that may include proximal muscle weakness, 
pain, and fractures, including multiple, recurrent, non-healing and non-traumatic fractures 
(Whyte 2013; Berkseth 2013). Hypophosphatasia is also characterized by lower than normal 
circulating levels of alkaline phosphatase (ALP) and higher than normal levels of the TNSALP 
substrates phosphoethanolamine (PEA) and pyridoxal 5'-phosphate (PLP) (Whyte 1985). 
In adults, TNSALP activity plays a critical role in bone remodeling, ensuring adequate 
mineralization of the osteoid matrix, preventing fractures, pseudofractures, and other sequelae of 
osteomalacia that may lead to profound muscle weakness, decreased physical function, and 
increasing disability. The adult skeleton undergoes continuous remodeling throughout the entire 
lifespan to: 
• Provide the calcium and phosphorus necessary for metabolism 
• Provide the means by which the skeleton can adapt to biomechanical requirements 
• Remove old, micro-damaged bone and replace it with new, stronger bone 
As bone remodels throughout life, osteoid is deposited at the sites of remodeling. The disease 
process in HPP inhibits bone mineralization at these sites of remodeling and results in “packets” 
of soft osteoid. As remodeling continues, the number of these sites on the skeleton with 
unmineralized areas of osteoid accumulate (ie, osteomalacia), bone strength is reduced, and the 
integrity of the skeleton is compromised. This compromised skeleton in HPP patients is prone to 
fractures. The number of fractures and pseudofractures experienced by HPP patients accumulates 
and increases with age. 
The clinical manifestations of HPP range in severity; however, in general there is increased 
disease severity with an earlier age at onset of disease symptoms. Classifications of HPP 
described in the literature include pediatric-onset HPP (comprised of perinatal-, infantile-, and 
juvenile-onset HPP), where first symptoms of HPP present at <18 years of age, and adult-onset 
HPP, where symptoms appear at ≥18 years of age (Whyte 2013).  
Severe functional deficits are commonly present in adults diagnosed with HPP (of any onset) 
including ambulation difficulties, weakness, shortened stature, and an inability to carry out 
activities of daily living. In HPP patients surviving to adulthood, long-term clinical sequelae 
include arthritis, pain, inability to remove previously placed internal fixation devices due to the 
risk of recurrent fracture, and the requirement for ambulatory assistive devices (eg, wheelchairs, 
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Protocol AA-HPP-208 
 
 
 
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16 November 2015 
wheeled walkers, and canes). The most common clinical features reported in adults diagnosed 
with HPP are musculoskeletal pain and fractures (Berkseth 2013).  
Asfotase alfa is a human recombinant tissue-nonspecific alkaline phosphatase-Fc-deca-aspartate 
fusion protein. It is a soluble glycoprotein of 726 amino acids made from the catalytic domain of 
human TNSALP (Swiss-Prot, P05186), the human immunoglobulin (Ig) G1 Fc domain (Swiss-
Prot, P01857) (to facilitate purification), and a deca-aspartate peptide domain (Kasugai 2000; 
Nishioka 2006). 
Asfotase alfa is an enzyme replacement therapy designed to address the underlying cause of 
HPP, a deficiency of TNSALP activity, by replacing the defective enzyme and preventing or 
reversing the mineralization defects of the skeleton, thereby preventing serious patient morbidity. 
Results from clinical studies to date demonstrate that asfotase alfa treatment was safe and well 
tolerated and elicits clinically meaningful improvements across a broad array of serious 
morbidities in HPP, including severely abnormal biochemistry, defective bone mineralization, 
abnormal bone structure, diminished physical function, and disability. 
More information about the known and expected benefits, risks, and reasonably anticipated 
adverse events (AEs) of asfotase alfa may be found in the Investigator’s Brochure (IB).   
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5. 
OBJECTIVES 
5.1. 
Primary Objective 
The primary objective of this study is to evaluate the pharmacokinetics (PK) and 
pharmacodynamics (PD) of asfotase alfa following administration of a range of dose regimens 
that encompasses the dose proven to be effective in children (6.0 mg/kg/week) in adult patients 
with pediatric-onset HPP.  
5.2. 
Secondary Objectives 
The secondary objective of this study is to evaluate the safety and tolerability of asfotase alfa in 
adult patients with pediatric-onset HPP. 
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Protocol AA-HPP-208 
 
 
 
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16 November 2015 
6. 
INVESTIGATIONAL PLAN 
Study AA-HPP-208 is a multicenter, randomized, open-label, PK, and PD dose response 
Phase 2a study of asfotase alfa in adult patients with pediatric-onset HPP. 
6.1. 
Overall Study Design 
Approximately 27 patients who have provided written informed consent, and have met all the 
inclusion criteria and none of the exclusion criteria, will be enrolled in the study, with the aim of 
having at least 6 patients in each cohort completing the study.  
Patients will be seen for a Screening visit and will be evaluated after the patient (or legal 
guardian) provides written informed consent. The Screening visit will include assessments to 
confirm the diagnosis of HPP, including medical history to confirm onset of HPP symptoms 
prior to age 18. Patients who fail any of the eligibility criteria may be re-screened only after 
discussion with the Medical Monitor. 
After completion of the Screening visit, patients who meet inclusion/exclusion criteria for 
Study AA-HPP-208 will be randomized in a 1:1:1 ratio to 1 of the following 3 cohorts:  
Cohort 1: Asfotase alfa 0.5 mg/kg initial single dose; followed by multiple dosing 
starting after 2 weeks at 0.5 mg/kg 3 times per week 
Cohort 2: Asfotase alfa 2.0 mg/kg initial single dose; followed by multiple dosing 
starting after 2 weeks at 2.0 mg/kg 3 times per week 
Cohort 3: Asfotase alfa 3.0 mg/kg initial single dose; followed by multiple dosing 
starting after 2 weeks at 3.0 mg/kg 3 times per week 
Randomization will be stratified by gender to ensure a similar distribution of gender in each 
cohort. 
Patients will receive a single dose on Week 1, Day 1; on Week 3, Day 1 (Study Day 15) patients 
will start multiple dosing with the 3 times per week regimen as described above. All doses will 
be administered as subcutaneous (SC) injections throughout the study.  
NOTE:  
The Week 1, Day 1 single dose must be administered on a Monday, and the multiple dosing must 
be administered on Mondays, Wednesdays, and Fridays during Week 3 through Week 9, as 
indicated in Table 2 and Table 3. 
The dose regimens planned for this study (ie, 1.5 mg/kg/week, 6.0 mg/kg/week, and 
9.0 mg/kg/week) bracket the recommended dose regimen in pediatric HPP patients of 
6.0 mg/kg/week, and span a 6-fold dose range from the lowest to the highest dose, allowing the 
best opportunity to construct dose-response relationships in adult patients. Weight-based (ie, 
mg/kg) dosing for asfotase alfa allows normalization of dosing across patient populations with 
different body weights (inter-patient) and within the same patient over time (intra-patient). 
Refer to Figure 1 for an illustration of the study design.
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16 November 2015 
Figure 1: 
Protocol AA-HPP-208 Study Design 
 
 
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16 November 2015 
6.2. 
Assessments 
The study will be conducted as outlined in Table 2 and Table 3. Study visits (in-clinic or 
inpatient) will occur during Screening (Week -12 to Week -2), the Run-in Period (Week -1), 
Week 1, Week 9, and Week 13. To facilitate scheduling of required study assessments at each 
visit, visits may be shortened or prolonged, as necessary, as long as the specified order of 
assessments and/or availability of results pertaining to laboratory testing and vital signs are 
adhered to. Following are important points to remember where study assessments are concerned: 
• The fasting blood and urine samples are to be collected first (8-hour fast with water 
ad libitum), before any additional study-related procedures are performed. Once all 
fasting laboratory samples are collected, patients are allowed to eat and/or drink at 
will. 
• Prior to study drug administration, results of same-day pregnancy testing for females 
of child-bearing potential must be negative. 
Patients may be asked to provide additional blood samples at an unscheduled visit at the request 
of the Sponsor or Investigator as part of a safety evaluation. Laboratory samples collected for 
routine blood and urine testing will be processed and/or analyzed by a central laboratory. Urine 
samples for pregnancy testing in female patients of childbearing potential will be analyzed at 
local laboratories at investigational sites, and blood tests for injection-associated reactions 
(IARs) occurring following home administration may be analyzed centrally, at the site or other 
local laboratories as available. 
As blood samples taken for study-related testing are sometimes not entirely depleted for the 
analyses, patients or their legal representative(s) will be given the option to consent to the use of 
the remaining portion of these samples for additional research. These samples will be used only 
for Alexion’s scientific research related to exploratory biology and biomarker assessments for 
asfotase alfa treatment and/or HPP. Each sample may continue to be labeled with the patient’s 
study identifiers (ie, patient ID). The patient or legal representative(s) may request that his or her 
samples, if still identifiable, be destroyed at any time; however, any data already collected from 
that sample will still be used for this research. The biological samples will remain the property of 
Alexion, and may be shared with other researchers as long as confidentiality is maintained. 
Further details of the study procedures and assessments are provided in the Study Operations 
Manual (SOM). 
 
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Table 2: 
Schedule of Events  
 
 
 
 
Assessment 
 
 
 
 
Screening5 
 
 
 
Run-In 
Period 
 
 
Main Study Period 
 
 
Safety 
F/U 
CallP1 
Single 
Dose 
No 
Dosing 
 
Weekly Dosing (3x/week) 
 
No Dosing 
 
 
Study DayP2,3 
Study WeekP2,3 
 
 
W -12 to 
W -2 
 
D -7 to 
D -1 
(W -1) 
 
 
D1-D7  
(W1) 
 
 
D8-D14  
(W2) 
 
 
D15-D35 
(W3-W5) 
 
 
D36-D42 
(W6) 
 
 
D43-D56 
(W7-W8) 
 
 
D57-D63 
(W9) 
 
 
D64-D80 
(W10-W12)  
D81-
D87/ 
EOS4 
(W13) 
 
Informed 
ConsentP5 
X 
 
 
 
 
 
 
 
 
 
 
Inclusion/ 
Exclusion Criteria  
X 
 
 
 
 
 
 
 
 
 
 
Demographics6 
X 
 
 
 
 
 
 
 
 
 
 
Medical history7
7 
X 
 
 
 
 
 
 
 
 
 
 
HPP gene 
mutation 
analysisP8 
X 
 
 
 
 
 
 
 
 
 
Concomitant 
medicationsP9 
X 
X 
X 
X 
X 
X 
X 
X 
X 
X 
 
Concomitant 
therapiesP9 
X 
X 
X 
X 
X 
X 
X 
X 
X 
X 
 
Physical 
examinationsP10 
X 
X 
X 
 
 
 
 
X 
 
X 
 
Vital signsP11 
X 
X 
X 
X 
X 
X 
X 
X 
X 
X 
 
Body WeightP10 
X 
X 
X 
 
X 
X 
X 
X 
X 
X 
 
Randomization 
 
X 
 
 
 
 
 
 
 
 
 
Required In-
ClinicP12 
X 
X 
X 
 
 
 
 
X 
 
X 
 
Study drug 
administration-
Single DoseP13,14 
 
 
X 
 
 
 
 
 
 
 
 
Study drug 
administration-3x 
Weekly 
DosingP13,14 
 
 
 
 
X 
X 
X 
X 
 
 
 
Chemistry, 
hematology, 
urinalysisP15 
X 
 
X 
 
 
 
 
X 
 
X 
 
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Protocol AA-HPP-208 
 
 
 
Alexion Pharma GmbH (Alexion) 
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Assessment 
 
 
 
 
Screening5 
 
 
 
Run-In 
Period 
 
 
Main Study Period 
 
 
Safety 
F/U 
CallP1 
Single 
Dose 
No 
Dosing 
 
Weekly Dosing (3x/week) 
 
No Dosing 
 
 
Study DayP2,3 
Study WeekP2,3 
 
 
W -12 to 
W -2 
 
D -7 to 
D -1 
(W -1) 
 
 
D1-D7  
(W1) 
 
 
D8-D14  
(W2) 
 
 
D15-D35 
(W3-W5) 
 
 
D36-D42 
(W6) 
 
 
D43-D56 
(W7-W8) 
 
 
D57-D63 
(W9) 
 
 
D64-D80 
(W10-W12)  
D81-
D87/ 
EOS4 
(W13) 
 
Lab Tests 
(vitamin D, serum 
PTH, urine 
Ca:creatinine)P15 
X 
 
X 
 
 
 
 
X 
 
X 
 
Pregnancy Test13 
X 
X 
X 
 
 
 
 
X 
 
X 
 
Renal ultrasound 
 
X 
 
 
 
 
 
 
 
X 
 
Ophthalmology 
examP16 
 
X 
 
 
 
 
 
 
 
X 
 
Pharmaco-
dynamics (PPi 
and PLP)P17,18 
X 
X 
X 
X 
X 
 
X 
X 
X 
X 
 
Anti-drug 
antibodiesP17,18 
 
 
X 
X 
X 
 
X 
X 
X 
X 
 
PharmacokineticsP
16,17 
 
 
X 
X 
X 
 
X 
X 
X 
X 
 
Tryptase for 
IAR19 
 
 
X 
 
 
 
 
 
 
 
 
Adverse eventsP20 
 
X – Continuous Monitoring  
Electronic diary21 
 
 
X - ContinuousMonitoring 
 
Abbreviations: EOS = end-of-study; F/U = follow-up; AE = adverse event;; IAR = injection-associated reaction; PD = pharmacodynamic; PK = pharmacokinetics; PLP = pyridoxal 
5′-phosphate; PPi = inorganic pyrophosphate; PTH = parathyroid hormone; SOM = Study Operations manual; W = Week; D = day.  
23TUNOTE: Patients may be asked to provide additional blood samples at an unscheduled visit at the request of the Sponsor or Investigator as part of a safety evaluation or for 
adjustment of the drug dose. 
NOTE: Baseline definitions: 
• 
For PD assessments, there are 5 pre-treatment baseline samples (-168, -156, -24, -12, and 0h) to be collected. The average value will be used for Baseline. 
• 
For PK, antibody, and laboratory assessments, Baseline is Day 1 pre-dose sample. 
• 
For Safety assessments, the last assessment prior to first dose will be used for Baseline 
1. 
The Safety Follow-Up telephone call will occur 90 days after the last dose of study drug. Males and females of child-bearing potential will be followed up for birth 
control and pregnancy information. Any reported pregnancies in female patients or female partners of male patients will be followed until the outcome of the pregnancy 
is known. Refer to Section 9.4.1.10 for further details. 
2. 
The Week 1, Day 1 single dose must be administered on a Monday, and the multiple dosing in Week 3 through Week 9 must be administered on Mondays, Wednesdays, 
and Fridays.  
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16 November 2015 
3. 
To facilitate scheduling of required study assessments at each visit, the study visit may be shortened or prolonged, as necessary, as long as the specified order of 
assessments and/or availability of results pertaining to laboratory work (including PK and pregnancy and asfotase alfa anti-drug antibody testing) and vital signs are 
adhered to.  
4. 
The patient’s Week 13 visit will be considered their End of Study visit. If a patient who withdraws or discontinues from the study prior to Week 13, a separate End of 
Study visit will be scheduled.  
5. 
If the time period between the initial Screening and the re-Screening is >12 weeks, all Screening procedures must be repeated. 
6. 
Demographics will be collected as permitted by region and may include date and region of birth, age, sex, ethnicity, race, and whether the patient is of Japanese descent. 
7. 
Medical history includes general medical history and HPP-specific medical history, including detail of pediatric-onset. Details of loss of adult teeth will be included as 
part of medical history. 
8. 
PHPP gene mutation analysis will be performed during Screening or the Rn-In Period if results are not available in the medical records. 
9. 
Concomitant medications and therapies must be collected from 30 days prior to study entry up until the final study visit. All available historical use of certain 
medications (ie, related to HPP, growth, etc.) will be captured. 
10. Physical examination will include assessment of general appearance; skin; head, ear, eye, nose, and throat; neck; lymph nodes; chest; heart; abdominal cavity; limbs; 
central nervous system; musculoskeletal. At Screening and Baseline visits, a complete physical examination will be performed. Thereafter, limited physical examinations 
(based on the patient’s signs/symptoms) may be performed. All physical examinations (complete and limited) will include weight (using a calibrated scale) and 
examination of asfotase alfa injection sites for potential reaction(s). The Screening and Baseline physical examination will include height (using a wall-mounted 
standiometer).  
11. Vital signs include blood pressure, heart rate, respiratory rate, and temperature. On dosing days in the clinic or under medical supervision at home, vital signs will be 
taken within 10 minutes before study drug injection.  
12. Required PIn-Clinic or inpatient study visits will occur during Screening, the Run-In Period (Week -1), Week 1, Week 9, and Week 13. At the discretion of the 
Investigator, Week 2 through Week 8 and Week 10 through Week 12 visits may be conducted in the clinic or at home by a home healthcare provider. 
13. Urine and serum pregnancy testing is required for women of childbearing potential only. Serum pregnancy testing is required at Screening and EOS visits; pregnancy 
testing at Run-In Period, Day 1 visit, and Week 9 visit can be either urine or serum testing at the discretion of the Investigator. Results of pregnancy testing must be 
negative prior to study drug administration (when applicable). 
14. Study drug will be administered in the clinic for the first dose and all other doses that occur during study visits. All other study drug administration will occur at home 
under the supervision of home healthcare.  
15. All patients are required to fast for 8 hours prior to laboratory testing (water all ad libitum). All urine and blood samples for laboratory assessments must be collected 
prior to study drug administration. Single exception is blood sample collection for analysis of PK parameters at required post-dose timepoints. For all patients, fasting 
samples should be collected at the beginning of the visit day, before any other study-related procedures are performed. 
16. A full ophthalmology examination will be performed at scheduled visits. The examination will assess for papilledema and signs of ectopic calcification, and will include 
assessments of visual acuity; adnexa; and slit-lamp biomicroscopy with examination of anterior chamber, lens, conjunctiva, cornea, and fundus. The ophthalmology 
examination should be performed by a qualified ophthalmologist. Sites will be provided ophthalmologic worksheets required to complete the full exam. Ophthalmology 
exams may be performed by a qualified optometrist (i.e., Doctor of Optometry, O.D.) as long as the optometrist works under the supervision of an ophthalmologist. 
17. Asfotase alfa anti-drug antibody testing and PK/PD analyses must be performed on samples obtained at the same time (ie, pre-dose samples from the same study visit).  
18. Refer to Table 3 for timing of PK/PD and asfotase alfa anti-drug antibody assessments. 
19. Serum sample for tryptase will be collected pre-dose on Day 1. Samples will be drawn only if the patient has no active allergies at the time, and will only be analyzed if 
the patient experiences a subsequent IAR. For acute or severe IARs (eg, with signs/symptoms of hypersensitivity, irrespective of the time from administration of study 
drug to onset), additional blood and urine samples must be collected to assess the reaction as described in Section 9.4.2.1.1 and detailed in the SOM. 
20. For systemic hypersensitivity reactions, additional blood and urine samples must be collected to assess the reaction. Refer to Section 9.5 for details of sample collection. 
21. Refer to SOM for additional information. 
 
 
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Table 3: 
Schedule of Events – Pharmacokinetic, Pharmacodynamic, and Immunogenicity Assessments 
 
 
Week 
 
Sampling Times  
 
DosingP2 
PK, PPi and 
PLP 
 
ADA 
Run-In Period 
Week -1  
Day -7: -168h, -156h pre-dose 
Day -1: -24h, -12h pre-dose 
NA 
PPi and PLP 
only 
NA 
Single Dose  
Week 1 
Day 1: pre-dose; post-dose 6h, 12h  
D1 (single-dose) 
All 
Day 1: pre-dose  
No Dosing 
Week 1 
Day 2: post-D1 dose 24h, 32h, 36h 
Day 3: post-D1 dose 48h, 56h, 60h 
Day 4: post-D1 dose 72h 
Day 5: post-D1 dose 96h 
Day 6: post-D1 dose 120h 
Day 7: post-D1 dose 144h 
None 
All 
 
No Dosing 
Week 2 
Day 8: post-D1 dose 168h 
Day 11: post-D1 dose 240h 
None 
All 
Day 8: post-D1 dose 168h 
 
Weekly Dosing 
(3 times per 
week) 
Week 3 
Day 15: pre-dose, post-dose 6h 
D15, D17, D19 
All 
Day 15: pre-dose 
Week 4 
Day 22: pre-dose, post-dose 6h  
D22, D24, D26 
All 
Day 22: pre-dose   
Week 5 
Day 29: pre-dose (trough), post-dose 6h 
D29, D31, D33 
All 
Day 29: pre-dose   
Week 6 
None 
D36, D38, D40 
None 
None 
Week 7  
Day 43: pre-dose (trough), post-dose 6h 
D43, D45, D47 
All 
Day 43: pre-dose 
Week 8 
Day 50: pre-dose (trough), post-dose 6h 
D50, D52, D54 
All 
Day 50: pre-dose 
Week 9 
Day 57: pre-dose 
Day 61: pre-dose (trough), post-dose 6h, 12h  
Day 62:post-D61 dose 24h, 32h, 36h, 
Day 63:post-D61 dose 48h, 56h, 60h 
D57, D59, D61 
All 
Day 61: pre-dose 
No Dosing 
Week 10 
Day 64: post-D61 dose 72h 
Day 65: post-D61 dose 96h 
Day 66: post-D61 dose 120h 
Day 67: post-D61 dose 144h 
Day 68: post-D61 dose 168h 
None 
All 
Day 68: post-D61 dose 168h 
Week 11 
Day 71: post-D61 dose 240h 
Day 75: post-D61 dose 336h 
None 
All 
Day 75: post-D61 dose 336h 
Week 12 
Day 80: post-D61 dose 456h  
None 
All 
Day 80: post-D61 dose 456h  
Week 13 
Day 87: post-D61 dose 624h 
None 
All 
Day 87: post-D61 dose 624h 
Abbreviations: ADA = anti-drug antibodies; PK = pharmacokinetics; PLP = pyridoxal 5′-phosphate; PPi = inorganic pyrophosphate; SOM = Study Operations Manual; D = day; 
h = hour  
NOTE: Trough is defined as pre-dose concentration (ie, concentration data-point collected just prior to the next dose). 
NOTE: Baseline definitions: 
• 
For PD assessments, there are 5 pre-treatment baseline samples (-168, -156, -24, -12, and 0h) to be collected. The average value will be used for Baseline. 
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• 
For PK and immunogenicity assessments, Baseline is Day 1 pre-dose sample. 
1 
Timepoints for pre-dose PK sample collection have a window of -15 minutes and for post-dose PK sample collection have a window of ±15 minutes. For additional 
instructions, please refer to the SOM. 
2 
The Week 1, Day 1 single dose must be administered on a Monday, and the multiple dosing in Week 3 through Week 9 must be administered on Mondays, Wednesdays, 
and Fridays. 
 
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7. 
STUDY POPULATION 
7.1. 
Inclusion Criteria 
Patients must meet all of the following inclusion criteria to be eligible for participation in this 
study: 
1. Patients or their legal representative(s) must provide written informed consent prior to 
undergoing any study-related procedures 
2. Patient has pediatric-onset HPP, defined as onset of first sign(s)/symptom(s) of HPP prior 
to 18 years of age 
3. Patients must have a documented diagnosis of HPP as indicated by a documented history 
of HPP-related skeletal abnormalities and 1 or more of the following: 
− Documented TNSALP gene mutation(s) from a certified laboratory 
− Serum ALP level below the age-adjusted normal range AND plasma PLP above 
the upper limit of normal at Screening. 
NOTE: Historical results from a certified laboratory for PLP may be used to determine 
patient eligibility. The criterion for plasma PLP is not applicable if the patient is 
receiving pyridoxine treatment. 
4. Patients must have a plasma PPi level of ≥3.9 µM at Screening 
5. Patients must be ≥18 years of age at Screening 
6. Sexually active male and female patients of childbearing potential must agree to use a 
highly effective method of birth control during the study and for 3 months following the 
last dose of study drug. Male patients must also not donate sperm during the Screening 
and treatment periods and for at least 3 months after the last dose of asfotase alfa. Highly 
effective contraceptive methods are as follows: 
a. Combined (estrogen and progestogen containing) hormonal contraception associated 
with inhibition of ovulation: 
− Oral 
− Intravaginal 
− Transdermal 
b. Progestogen-only hormonal contraception associated with inhibition of ovulation: 
− Oral 
− Injectable 
− Implantable 
c. Intrauterine device 
d. Intrauterine hormone-releasing system 
e. Bilateral tubal occlusion 
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f. Vasectomy with documented medical assessment of surgical success 
g. Condom and spermicide 
7. Female patients of childbearing potential must have a negative pregnancy test at the time 
of enrollment  
8. Female patients not of child-bearing potential due to surgical sterilization (at least 
6 weeks after surgical bilateral oophorectomy with or without hysterectomy or at least 
6 weeks after tubal ligation) confirmed by medical history, or menopause 
a. Menopausal women include women with either 
− Spontaneous amenorrhea for at least 12 months, not induced by a medical 
condition such as anorexia nervosa and not taking medications during the 
amenorrhea that induced the amenorrhea (for example, oral contraceptives, 
hormones, gonadotropin releasing hormone, antiestrogens, selective estrogen 
receptor modulators, or chemotherapy), or 
− Spontaneous amenorrhea for 6 to 12 months and a follicle-stimulating hormone 
level >40 mIU/mL or estradiol level ≤110 pmol/L 
9. Patients must be willing to comply with study procedures and the visit schedule 
7.2. 
Exclusion Criteria 
Patients will be excluded from participation in this study if they meet any of the following 
exclusion criteria: 
1. Investigational site personnel directly affiliated with this study and/or their immediate 
families. Immediate family is defined as a spouse, parent, child, or sibling, whether 
biological or legally adopted. 
2. Employees of Alexion Pharmaceuticals 
3. Currently enrolled in a clinical study involving another study drug or nonapproved use of 
a drug or device, or concurrently enrolled in any other type of medical research judged 
not to be scientifically or medically compatible with this study (excluding the HPP 
registry, in which concurrent enrollment is allowed). 
4. Participated, within the last 30 days, in a clinical study involving a study drug (other than 
the study drug used in this study). If the previous study drug has a long half-life, 
3 months or 5 half-lives (whichever is longer) should have passed. 
5. Have completed or withdrawn from this study or any other study investigating asfotase 
alfa in the previous 3 years. This exclusion criterion does not apply to patients who are 
re-screened prior to randomization or patients enrolled in the HPP registry. 
6. Women who are pregnant, planning to become pregnant, or breastfeeding 
7. Serum 25-OH Vitamin D below 20 ng/mL at Screening (results from local laboratory 
may be used if within 4 weeks of Screening) 
8. Screening serum creatinine or parathyroid hormone (PTH) levels 1.5 times the upper 
limit of normal 
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9. Medical condition, serious concurrent illness and/or injury, recent orthopedic surgery, or 
other extenuating circumstance that, in the opinion of the Investigator, may significantly 
interfere with study compliance or study endpoints, including all prescribed evaluations 
and follow-up activities 
10. Prior treatment with bisphosphonates within 2 years of study entry for any length of time 
or for more than 2 consecutive years at any prior timepoint 
11. Treatment with PTH, strontium, or sclerostin inhibitors within 6 months prior to the first 
dose of study drug 
12. Unwilling or unable to comply with the use of a data collection device on which study 
patients will directly record data  
7.3. 
Discontinuations 
7.3.1. 
Discontinuation of Patients 
The criteria for enrollment must be followed explicitly. If the investigational site identifies a 
patient who did not meet enrollment criteria and who was inadvertently enrolled, the Sponsor 
must be notified. If the Sponsor identifies a patient who did not meet enrollment criteria and who 
was inadvertently enrolled, the investigational site will be notified. A discussion must occur 
between the Sponsor’s Medical Monitor and the Investigator to determine whether the patient 
may continue in the study, with or without study drug. Ineligible patients who are inadvertently 
enrolled may be maintained in the study and on study drug when the Sponsor’s Medical Monitor 
agrees with the Investigator that it is medically appropriate for that patient. The patient may not 
continue in the study with or without study drug if the Sponsor’s Medical Monitor does not agree 
with the Investigator’s determination that it is medically appropriate for the patient to continue. 
The Investigator must obtain documented approval from the Sponsor’s Medical Monitor to allow 
the inadvertently enrolled patient to continue in the study with or without study drug. 
In addition, patients will be discontinued from the study drug and/or from the study in the 
following circumstances: 
• Enrollment in any other clinical study involving a study drug or enrollment in any 
other type of medical research judged not to be scientifically or medically compatible 
with this study 
• Investigator Decision 
− The Investigator decides that the patient should be discontinued from the study 
− If the patient, for any reason, requires treatment with another therapeutic agent 
that has been demonstrated to be effective for treatment of HPP, discontinuation 
from the study will occur prior to introduction of the new agent 
• Patient Decision  
− The patient requests to be withdrawn from the study 
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• Sponsor Decision 
− Alexion or designee stops the study or stops the patient’s participation in the 
study for medical, safety, regulatory, or other reasons consistent with applicable 
laws, regulations, and Good Clinical Practice (GCP) 
• Adverse Event 
− If the Investigator decides that the patient should be withdrawn because of a 
serious AE (SAE) or a clinically significant laboratory value, the study drug is to 
be discontinued and appropriate measures are to be taken. Alexion or designee is 
to be alerted immediately. Refer to Section 9.4.1.11. 
Patients who discontinue the study drug and/or study early will have end-of-study procedures 
performed as shown in the Schedule of Events (Table 2). 
All AEs ongoing at the time of withdrawal require 30 day follow-up. The Investigator will be 
asked to follow all SAEs that were ongoing at the time of withdrawal until resolution or until the 
patient is lost to follow-up. 
7.3.2. 
Discontinuation of Study Sites  
Study site participation may be discontinued if Alexion or designee, the Investigator, or the 
institutional review board, independent ethics committee, or research ethics board 
(IRB/IEC/REB) of the study site judges it necessary for medical, safety, regulatory, or other 
reasons consistent with applicable laws, regulations, and GCP. 
7.3.3. 
Discontinuation of Study 
The study will be discontinued if Alexion or designee judges it necessary for medical, safety, 
regulatory, or other reasons consistent with applicable laws, regulations, and GCP. 
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8. 
TREATMENT 
8.1. 
Treatments Administered 
This study involves an evaluation of asfotase alfa administered by SC injection at doses of 
thrice-weekly 0.5 mg/kg (1.5 mg/kg/week), 2.0 mg/kg (6.0 mg/kg/week), and 3.0 mg/kg 
(9.0 mg/kg/week). Asfotase alfa should be administered only as a SC injection and should not be 
administered intravenously or intramuscularly. The maximum volume of medicinal product per 
injection should not exceed 1.0 mL. If more than 1.0 mL is required, multiple injections may be 
administered at the same time. Table 4 presents the treatment regimens. 
Table 4: 
Treatment Regimens 
Cohort 
Regimen and Dose 
Cohort 1 
Asfotase alfa 0.5 mg/kg initial single dose; followed by multiple dosing starting after 2 weeks at 
0.5 mg/kg 3 times per week 
Cohort 2 
Asfotase alfa 2.0 mg/kg initial single dose; followed by multiple dosing starting after 2 weeks at 
2.0 mg/kg 3 times per week 
Cohort 3 
Asfotase alfa 3.0 mg/kg initial single dose; followed by multiple dosing starting after 2 weeks at 
3.0 mg/kg 3 times per week 
The total amount of asfotase alfa administered may be adjusted at each study visit to account for 
changes in body weight. 
The Investigator or designee is responsible for the following: 
• Explaining the correct use of the study drug to the patient or legal representative  
• Verifying that instructions are followed properly 
• Maintaining accurate records of study drug dispensing and collection 
• Returning all unused study drug to the Sponsor or designee at the end of the study 
8.2. 
Clinical Study Materials and Supplies 
Asfotase alfa is a fusion protein made from the soluble catalytic domain of human TNSALP, the 
human IgG1 Fc domain for purification, and a deca-aspartate peptide used as a bone targeting 
domain. It is derived from Chinese Hamster Ovary cells and is supplied as a clear, colorless, 
sterile solution for injection in single use glass vials.  
Table 5 summarizes the concentrations and extractable amounts of study drug that will be used 
for the study.  
Table 5: 
Summary of Vial Concentrations and Extractable Volumes 
Concentration 
Extractable  
Volume (mL) 
Extractable  
Product (mg) 
100 mg/mL 
0.8 
80 
At a minimum, study drug will be labeled with: 
• The protocol number 
• Lot number/expiry date 
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• Sponsor name and address 
• Instructions for use and storage 
Study drug will be labeled according to the country’s regulatory requirements. 
Study drug must be refrigerated between 2°C and 8°C in a secure area with limited access 
immediately upon receipt and inventory at the investigational site. To ensure the integrity of the 
study drug, storage temperature at the investigational site must be monitored on a daily basis and 
appropriately documented throughout the study conduct. Study drug administered for home use 
by patients should be stored refrigerated at 2 C to 8°C. 
The following guidelines must be adhered to where study drug handling is concerned: 
• The Investigator must only supply study drug to patients enrolled in the clinical study 
• The Investigator must ensure study drug is stored under controlled storage conditions, 
accessible only to those authorized by the Investigator to dispense the study drug 
• The Investigator must ensure that study drug accountability is maintained on an ongoing 
basis during the study 
• At the conclusion or termination of the study, after final accountability for study drug 
inventory has been performed, the Investigator must ensure unused study drug supplies at 
the investigational site are returned to Alexion or designee in accordance with Sponsor 
instructions or destroyed if the site has appropriate facilities and written procedures to 
dispose of study drug 
Additional information on study drug accountability, handling, and disposal requirements can be 
found in the Pharmacy Manual.  
Note: In some cases, sites may be permitted to destroy the study drug if, during the 
investigational site selection, the study monitor has verified and documented that the site has 
appropriate facilities and written procedures to dispose of study drug. The material must first be 
counted, reconciled, and approved for destruction by the Sponsor or designee. 
8.3. 
Method of Assignment to Treatment 
Patients who meet all criteria for enrollment will be randomized to a cohort during Run-In Period 
(Week -1). Assignment to cohorts will be determined by a computer-generated random sequence 
using an interactive voice- or web- response system (IXRS). Enough vials for the calculated 
doses between visits will be dispensed to study patients at each visit.  
Approximately 27 adult patients who meet eligibility criteria for study participation will be 
randomized to in a 1:1:1 ratio to 1 of the following 3 cohorts:  
• Cohort 1: 0.5 mg/kg initial single dose; followed by multiple dosing starting after 
2 weeks at 0.5 mg/kg 3 times per week  
• Cohort 2: 2.0 mg/kg initial single dose; followed by multiple dosing starting after 
2 weeks at 2.0 mg/kg 3 times per week  
• Cohort 3: 3.0 mg/kg initial single dose; followed by multiple dosing starting after 
2 weeks at 3.0 mg/kg 3 times per week dosing 
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Randomization will be stratified by gender to ensure a similar distribution of gender in each 
cohort. 
8.4. 
Rationale for Selection of Doses in the Study 
Based on relevant non-clinical data, as well as current human experience with asfotase alfa in 
patients with hypophosphatasia to date, a dose of 6 mg/kg/week administered subcutaneously is 
the recommended dose in pediatric patients; this dose regimen has been approved for treatment 
of pediatric patients with HPP in the US, EU, and other countries. 
The dose regimens planned for this study (ie, 1.5 mg/kg/week, 6.0 mg/kg/week, and 
9.0 mg/kg/week) bracket the recommended dose regimen in pediatric HPP patients and span a 
6-fold dose range from the lowest to the highest dose, allowing the best opportunity to construct 
dose-response relationships in adult patients with pediatric-onset HPP.  
Weight based (ie, mg/kg) dosing for asfotase alfa allows normalization of dosing across patient 
populations with different body weights (inter-patient) and within the same patient over time 
(intra-patient). 
8.5. 
Selection and Timing of Doses 
Patients will be randomly assigned by IXRS to 1 of the 3 cohorts (Table 4). Weekly doses of 
asfotase alfa will be administered 3 days per week as detailed in Section 8.1. 
The number of vials used to prepare injections will be determined based on the patient’s weight 
at that visit. The first dose of asfotase alfa will be prepared and administered at the 
investigational site on the Week 1, Day 1 study visit. Asfotase alfa will also be prepared and 
administered at the investigational site on dosing days that occur during all required study visits. 
The Investigator, patient, or designee may prepare and administer injections at study visits. For 
injections between study visits, asfotase alfa may be prepared and administered by the patient or 
designee at home under the supervision of home healthcare. 
If a patient experiences an acute or severe IAR at home (eg, with signs/symptoms of 
hypersensitivity, irrespective of the time from administration of study drug to onset), the patient 
or legal representative(s) should call the site as soon as possible to discuss with the Investigator 
the need for medical evaluation in the medical office/hospital. Collection of blood samples for 
analyses outlined in Section 9.5 may be required upon recommendation of the Investigator and 
availability of these tests at the local laboratory. 
Throughout the study, injection sites should be rotated among 8 different body areas (both thighs 
and buttocks, both sides of the abdomen, and both upper arms) and carefully monitored for 
sign(s) of potential reaction(s). Note that any injection sites with unresolved injection site 
reactions (ISRs) should not be used for injections again until the reaction subsides. 
Full instructions for data collection using the electronic diary are included in the SOM.   
8.6. 
Blinding and Unblinding 
This is an open-label study.  
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8.7. 
Concomitant Medication/Therapy 
Any HPP-related medication use by the patient within 30 days prior to study entry through the 
final study visit must be recorded. Concomitant medications, including pretreatment with 
antihistamines or steroids, for patients who experience IARs will be monitored continuously 
throughout the study. 
Local anesthesia should not be used when administering injections of asfotase alfa because the 
interactions of a local anesthetic and asfotase alfa are unknown.  
8.8. 
Treatment Compliance 
The Investigator or designee must ensure that all study participants are adequately informed on 
the specific study drug regimens required for compliance with the study protocol. 
Study drug compliance will be determined by the following:  
• Study drug administration data will be entered into the electronic patient diary by the 
patient and reviewed by the Investigator at each study visit 
• Missed and improperly administered study drug doses must be clearly documented in 
the patient’s electronic diaries and study records, and documented as protocol 
deviations 
• The patients will be instructed to return any used study drug at the next study visit for 
the purpose of performing drug accountability 
For drug accountability purposes, empty vials of asfotase alfa will be discarded in a sharps 
container and returned when the container is full, or at the last study visit. 
Treatment compliance is defined as taking 100% of the required doses of study drug; missed 
doses will be captured as a protocol deviation. Study sites are encouraged to make telephone 
calls to patients at regular intervals to ensure patient compliance with their assigned injectable 
study drug.  
In addition to the assessment of a patient’s compliance with the study drug administration, other 
aspects of compliance with the study treatments will be assessed at each visit based on the 
patient’s adherence to the visit schedule, completion of study diaries, and any other parameters 
the Investigator considers necessary.     
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9. 
PHARMACOKINETIC AND PHARMACODYNAMIC 
ASSESSMENTS, SAFETY EVALUATIONS, SAMPLE 
COLLECTION AND TESTING, AND APPROPRIATENESS OF 
MEASUREMENTS 
Study procedures and their timing (including tolerance limits for timing) are summarized in the 
Schedule of Assessments (Table 2). Details of the analyses to be performed for each assessment 
are summarized in Section 11. 
NOTE:  
The Week 1, Day 1 single dose must be administered on a Monday, and the multiple dosing must 
be administered on Mondays, Wednesdays, and Fridays during Week 3 through Week 9, as 
indicated in Table 2 and Table 3. 
9.1. 
Pharmacokinetic Assessments 
9.1.1. 
Asfotase Alfa Activity 
Assessment of PK will be performed on all patients. Blood samples for the measurement of 
serum asfotase alfa activity will be collected at the visits and/or timepoints specified in Table 2 
and Table 3 (timepoints for pre-dose PK sample collection have a window of -15 minutes, and 
post-dose PK sample collection have a window of ±15 minutes). 13TSerum asfotase alfa activity 
will be measured at a central laboratory. Refer to the SOM and Laboratory Manual for complete 
PK collection procedures as well as preparation and shipping procedures. 
9.2. 
Efficacy/Pharmacodynamic Assessments 
9.2.1. 
Plasma Inorganic Pyrophosphate and Plasma Pyridoxal-5’ Phosphate 
Blood samples for measurement of PPi and PLP in plasma will be collected at the study visits 
and times indicated in Table 2 and Table 3 to assess as potential substrates of asfotase alfa 
activity. These collections will only be made using levamisole tubes as outlined in the 
Laboratory Manual. 
9.3. 
Safety Assessments 
9.3.1. 
Physical Examinations 
A physical examination will be performed at the times specified in Table 2 using a standardized 
form with a checklist of items. Each examination will include the following assessments: general 
appearance; skin; head, ear, eye, nose, and throat (including tooth count); neck; lymph nodes; 
chest; heart; abdominal cavity; limbs; central nervous system; and musculoskeletal.  
If clinically significant changes from Screening/Baseline are noted, the changes will be 
documented as AEs on the AE tab of the electronic Case Report Form (eCRF). Clinical 
significance is defined as any variation in physical findings that has medical relevance and may 
result in an alteration in medical care. The Investigator will continue to monitor the patient until 
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the parameter returns to Baseline or until the Investigator determines that follow-up is no longer 
medically necessary. 
9.3.2. 
Vital Signs 
The following vital signs will be recorded at the times specified in Table 2: height (cm), weight 
(kg), systolic and diastolic blood pressure (millimeters of mercury [mmHg]), heart rate 
(beats/minute), respiratory rate (breaths/minute), and temperature (degrees Celsius [°C] or 
degrees Fahrenheit [°F]). Vital signs will be taken immediately prior to each study drug 
administration. 
If clinically significant vital sign changes as compared to Screening/Baseline are noted, the 
changes will be documented as AEs on the AE tab of the eCRF. Clinical significance is defined 
as any variation in vital signs that has medical relevance and may result in an alteration in 
medical care. The Investigator will continue to monitor the patient until the parameter returns to 
Baseline or until the Investigator determines that follow-up is no longer medically necessary. 
9.3.3. 
Serum Chemistry, Hematology, and Urinalysis 
Serum chemistry, hematology, and urinalysis will be performed at the times specified in Table 2. 
Specific laboratory assessments are provided in Appendix 14.1. 
Laboratory assessments for safety will be tested at a central laboratory facility. Laboratory 
reports will be made available to the Investigators in a timely manner for clinical management of 
patients.   
The Investigators must assess all abnormal laboratory values as either clinically significant or not 
clinically significant. It is anticipated that some laboratory values may be outside of the normal 
value range due to the underlying disease. As in routine practice, the Investigators should use 
their medical judgment when assessing clinical significance. Clinical significance is defined as 
any variation in laboratory measurements which has medical relevance and which results in a 
change in medical care. If clinically significant laboratory changes from Baseline are noted, the 
changes will be documented as AEs on the AE tab of the eCRF. The Investigator will also assess 
the relationship to study treatment for all clinically significant out of range values 
(Section 9.4.1.8). The Investigator will continue to monitor the patient with additional laboratory 
assessments until (1) values have reached normal range and/or Baseline, or (2) in the judgment 
of the Investigator, out of range values are not related to the administration of study drug or other 
protocol-specific procedures. 
9.3.4. 
Ophthalmology Assessments 
A full ophthalmology examination will be performed at the times specified in Table 2. The 
examination will assess for papilledema and signs of ectopic calcification, and will include 
assessments of visual acuity; adnexa; and slit-lamp biomicroscopy with examination of anterior 
chamber, lens, conjunctiva, cornea, and fundus. Sites will be provided ophthalmologic 
worksheets required to complete the full exam. Ophthalmology exams may be performed by a 
qualified ophthalmologist or optometrist (ie, Doctor of Optometry, OD) as long as the 
optometrist works under the supervision of an ophthalmologist (MD). 
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Clinically significant changes from Baseline in ophthalmology examinations must be considered 
an AE and recorded in the eCRF. 
Additional information on ophthalmology examinations can be found in the SOM. 
9.3.5. 
Renal Ultrasound 
A renal ultrasound will be performed as outlined in Table 2 to assess for the presence of 
nephrocalcinosis. Clinically significant changes from Baseline in renal ultrasounds must be 
considered an AE and recorded in the eCRF for the study. 
9.4. 
Safety Evaluations 
Investigators are responsible for monitoring the safety of patients and for alerting Alexion or 
designee to any event that seems unusual, even if this event may be considered an unanticipated 
benefit to the patient. 
The Investigator is responsible for detecting, assessing, documenting, and reporting of all AEs. 
Adverse Events reported by the patient, by the parent or legal guardian, identified in response to 
an open-ended question from study personnel, or revealed by observation, physical examination, 
or other study procedures must be collected and recorded as described in Section 9.4.1.4. 
9.4.1. 
Adverse Event  
An AE is any untoward medical occurrence in a patient or clinical study subject administered a 
medicinal product and which does not necessarily have a causal relationship with this treatment. 
An AE can therefore be any unfavorable or unintended sign (for example, an abnormal 
laboratory finding), symptom, or disease temporally associated with the use of a medicinal 
product, whether or not considered related to this medicinal product. 
Exacerbation of a chronic or intermittent pre-existing condition including an increase in 
frequency and/or intensity of the condition, and abnormal laboratory findings that are considered 
to be of clinical significance are all considered to be AEs. 
The definition of an AE also covers medication errors and uses outside what is foreseen in the 
protocol, including misuse and abuse of the product. 
Situations where an untoward medical occurrence did not occur (social and/or convenience 
admission to a hospital), and anticipated day-to-day fluctuations of pre-existing disease(s) or 
condition(s) present or detected at the start of the study that do not worsen are not AEs. 
High ALP levels detected through clinical laboratory testing will not be considered an AE after 
initiation of the study drug as these reflect circulating levels of asfotase alfa. 
9.4.1.1. 
Medical Procedures 
Elective procedures that were pre-planned prior to the time that written informed consent was 
obtained are not considered to be AEs. Any complication or worsening of a pre-existing 
condition leading to the procedure UisU considered an AE. In addition, any AE that occurs as an 
outcome of the planned procedure is considered an AE. 
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Diagnostic and therapeutic procedures (invasive and non-invasive) such as surgery or 
angiography should not be reported as an AE or SAE. However, the medical condition or the 
diagnosis that was responsible for the procedure should be recorded. The procedure should be 
recorded in the narrative as treatment for the AE or SAE (eg, laparoscopic cholecystectomy is 
the procedure or treatment for an SAE of necrotic gall bladder). 
9.4.1.2. 
Abnormal Test Findings 
Abnormal test findings may be considered AEs or SAEs; however, Investigators are strongly 
encouraged to report the diagnosis, sign, or symptom rather than the abnormal result. The criteria 
for an abnormal test finding being classified as an AE or SAE are any of the following: 
• Test result is associated with a sign or symptom 
• Test result requires additional diagnostic testing 
• Test result requires a medical or surgical intervention 
• Test result leads to a change in study dosing outside of the protocol defined dosing or 
discontinuation from the study 
• Test result requires significant additional treatment (ie, addition of new medication, 
significant increase in dose of current medication) 
9.4.1.3. 
Lack of Efficacy 
Lack of drug effect is not an AE in clinical studies, because the purpose of the clinical study is to 
establish drug effect. 
9.4.1.4. 
Recording Adverse Events 
All observed or reported AEs regardless of treatment or causal relationship must be recorded and 
reported as described in Section 9.4.1.11. 
For all AEs, the Investigator must obtain adequate information for the following:  
1. Determine the outcome of the AE 
2. Determine if the event meets criteria for an SAE 
3. Assess the severity of the AE 
4. Determine the causality of the AE 
For all AEs, regardless of casual relationship, the Investigator must follow-up on the outcome of 
the event until the event or sequelae either resolve or stabilize. 
Adverse events spontaneously reported by the patient, and/or parent or legal guardian and/or 
identified in response to an open-ended question from study personnel, or revealed by 
observation will be recorded during the study phase by the Investigator. Adverse event 
information will be collected from the signing of informed consent until completion of the study.  
Adverse Events must be documented in clear, unambiguous medical terms. Study personnel are 
advised not to use abbreviations or acronyms.  
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For each AE record only the diagnosis on the AE page of eCRF, do not report the characteristic 
signs and symptoms of the diagnosis as additional AEs.  
If a diagnosis is not available, record each sign and symptom as an AE, when a diagnosis 
becomes available, study personnel are to update the AE page of the eCRF with relevant 
diagnosis only. 
Change in severity of an AE should be documented based on specific guidelines in the eCRF 
Completion Guidelines.  
9.4.1.5. 
Expectedness Assessment of Adverse Events 
The expectedness of an AE is determined by the Sponsor in the reference safety information 
contained in the current version of the Investigator Brochure (IB). 
9.4.1.6. 
Serious Adverse Events 
An AE that fulfills any 1 of the criteria listed below must be recorded as an SAE. 
An SAE or reaction is described as any untoward medical occurrence that at any dose: 
1. Is a congenital anomaly/birth defect 
2. Results in persistent or significant disability/incapacity 
3. Results in death 
4. Results in or prolongs hospitalization  
NOTE: Requires inpatient hospitalization or prolongation of existing hospitalization. 
Adverse events that are associated with hospitalization or prolongation of hospitalization 
are considered SAEs. All admissions to a health care facility meet this criteria, even if 
less than 24 hours. Criteria for seriousness are also met if transfer within the hospital is 
done to receive more intense medical or surgical care (eg, medical floor to the ICU).   
Hospitalization does not include the following: 
− Rehabilitation facility 
− Hospice facility 
− Nursing facility 
− Emergency Room 
− Same day surgery 
− Hospitalization or prolongation of hospitalization not associated with an adverse 
event is not an SAE; examples include admission for a pre-existing condition not 
associated with either a new AE or with worsening of a pre-existing AE, protocol-
specified admission, pre-planned admission 
5. Is life-threatening 
NOTE: The term "life-threatening" in the definition of "serious" refers to an event in 
which the patient was at risk of death at the time of the event; it does not refer to an event 
which hypothetically might have caused death if it were more severe. 
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6. Other medically important SAE 
NOTE: Medical and scientific judgment should be exercised in deciding whether expedited 
reporting is appropriate in other situations, such as important medical events that may not be 
immediately life-threatening or result in death or hospitalization but may jeopardize the patient 
or may require intervention to prevent one of the other outcomes listed in the definition above. 
These should also usually be considered serious. Examples of such events are intensive treatment 
in an emergency room or at home for allergic bronchospasm, blood dyscrasias, or convulsions 
that do not result in hospitalization or development of drug dependency or drug abuse. 
9.4.1.6.1. Suspected Unexpected Serious Adverse Reactions 
Suspected unexpected serious adverse reactions (SUSARs) are serious events that are not listed 
in the IB and that the investigator identifies as related to study drug or procedure. United States 
21 CFR 312.32 and European Union Clinical Trial Directive 2001/20/EC and the associated 
detailed guidances or national regulatory requirements in participating countries require the 
reporting of SUSARs. The Sponsor has procedures that will be followed for the recording and 
expedited reporting of SUSARs that are consistent with global regulations and the associated 
detailed guidances. 
9.4.1.7. 
Severity Assessments 
Investigators will be instructed to rate the severity of AEs using the following criteria: 
Mild 
Events require minimal or no treatment and do not interfere with the patient’s 
daily activities. 
Moderate Events result in a low level of inconvenience or concerns with the therapeutic 
measures. Moderate events may cause some interference with functioning. 
Severe 
Events interrupt a patient’s usual daily activity and may require systemic drug 
therapy or other treatment. Severe events are usually incapacitating. 
Change in severity of an AE should be documented based on specific guidelines in the eCRF 
Completion Guidelines. 
Severity and seriousness must be differentiated: severity describes the intensity of an AE, while 
the term seriousness refers to an AE that has met the criteria for an SAE. 
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9.4.1.8. 
Causality Assessment 
An Investigator causality assessment (Unrelated, Unlikely, Possible, Probable, or Definite) must 
be provided for all AEs (both serious and non-serious). This assessment must be recorded in the 
eCRF and any additional SAE forms as appropriate.  
Not Related 
Suggests that there is no association between the Investigational 
Product and the reported event. 
Unlikely Related 
Suggests that the clinical picture is highly consistent with a cause 
other than the Investigational Product but attribution cannot be made 
with absolute certainty and a relationship between the 
Investigational Product, and AE cannot be excluded with complete 
confidence. 
Possibly Related 
Suggests that treatment with the Investigational Product may have 
caused or contributed to the AE (ie, the event follows a reasonable 
temporal sequence from the time of drug administration and/or 
follows a known response pattern to the Investigational Product, but 
could also have been produced by other factors). 
Probably Related 
Suggests that a reasonable temporal sequence of the event with the 
Investigational Product administration exists and there is likely 
association of the event with the Investigational Product. This will 
be based upon the known pharmacological action of the 
Investigational Product, known or previously reported adverse 
reactions to the Investigational Product or class of drugs, or 
judgment based on the Investigator’s clinical experience. 
Definitely Related 
Temporal relationship to the Investigational Product, other 
conditions (concurrent illness, concurrent medication reaction, or 
progression/expression of disease state) do not appear to explain 
event, corresponds with the known pharmaceutical profile, 
improvement on discontinuation, re-appearance on re-challenge. 
9.4.1.9. 
Adverse Event Outcome 
If a patient experiences an SAE with an outcome of death:  
• The SAE resulting in death should have an outcome documented as death/fatal with 
an end date as the date of death 
• If the patient had additional AEs/SAEs that were ongoing at the time of death, these 
events should be documented as ongoing with no end date 
• Only 1 event should have an outcome of death/fatal unless an autopsy report or 
Investigator states otherwise 
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9.4.1.10. Exposure During Pregnancy and/or Lactation 
Pregnancy data will be collected during this study for all patients. 
For all Alexion products, both in development or post-approval, exposure during pregnancy must 
be recorded and followed. Exposure during pregnancy, also called exposure in utero, can be the 
result of either maternal exposure or transmission of drug product via semen following paternal 
exposure. 
If a patient within this study or a patient’s partner becomes or is found to be pregnant while 
treated or exposed to study drug, the Investigator must submit a pregnancy form to Alexion via 
the same method as SAE reporting. Alexion Global Pharmacovigilance will supply the 
Investigator with a copy of a “Pregnancy Reporting and Outcome Form/Breast Feeding” form 
and must be notified via the same method as SAE reporting. 
Exposure of an infant to an Alexion product during breastfeeding would need to be reported via 
the “Pregnancy Reporting and Outcome Form/Breast Feeding” form, and any AEs an infant may 
experience following breastfeeding needs to be reported to Alexion or Alexion Global 
Pharmacovigilance designee. 
The patient should be followed until the outcome of the pregnancy is known (spontaneous 
miscarriage, elective termination, normal birth, or congenital abnormality), even if the patient 
discontinued study drug or discontinues from the study. When the outcome of the pregnancy 
becomes known the form should be completed and returned to Alexion or Alexion Global 
Pharmacovigilance designee. If additional follow-up is required, the Investigator will be 
requested to provide the information. 
Pregnancy in itself is not regarded as an AE unless there is a suspicion that study drug may have 
interfered with the effectiveness of a contraceptive medication. However, complications of 
pregnancy and abnormal outcomes of pregnancy are AEs and many may meet criteria for an 
SAE. Complications of pregnancy and abnormal outcomes of pregnancy such as ectopic 
pregnancy, spontaneous abortion, intrauterine fetal demise, neonatal death, or congenital 
anomaly would meet criteria of an SAE and thus, should be reported as an SAE. Elective 
abortions without complications should not be reported as AEs. 
9.4.1.11. Reporting of Adverse Event(s) and Serious Adverse Event(s) to the Sponsor 
All non-serious AEs must be recorded in the electronic data capture (EDC) system upon 
awareness.  
All SAEs must be reported to Alexion Pharmacovigilance within 24 hours of first awareness of 
the event by the Investigator or designee. The reporting timelines must be followed for all initial 
SAE cases and follow-up reports to the initial case.  
The Investigator must record the SAE data in the patient’s eCRF and verify the accuracy of the 
information recorded pages with the corresponding source documents. The SAE information will 
be sent via the Safety Gateway, a tool within the electronic data capture system, to Alexion 
Global Pharmacovigilance.  
Please note - The fax number and email are provided below as a back-up/contingency for the 
site to report the SAE in case the site is unable to send the report via Safety Gateway.  
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Email: 
 
*Fax: 
 
If applicable or requested, additional information such as relevant medical records and/or 
diagnostic information should be reported to Alexion Global Pharmacovigilance via the email or 
fax address as noted above..  
Any new follow-up information regarding the SAE should be entered in the patient’s eCRF and 
sent electronically via the Safety Gateway to Alexion Global Pharmacovigilance within the same 
timeframe as the initial report stated above. 
For all SAEs reported via email/fax, the Investigator must provide the following: 
• Patient’s Registry ID number 
• Causality of the SAE(s) to asfotase alfa 
• Outcome of the SAE(s) (ie, resolved, resolving, resolved with sequelae, not resolved, 
or death) 
• Relevant medical records and laboratory/diagnostic information (eg, a copy of death 
certificate and/or autopsy results, if applicable, for SAE reports involving a death) 
• Appropriate and requested follow-up information in the time frame detailed above. 
Alexion is responsible for notifying the relevant regulatory authorities of certain events. 
Depending on local regulations, the Sponsor, the Sponsors designee, or the Investigator will be 
responsible for notifying the IRB/EC/REB of all SAEs that occur at a site per local 
IRB/EC/REB-established guidelines for submission. Investigators will also be notified of all 
unexpected, serious, drug-related events that have been expedited to regulatory authorities during 
the HPP Registry. These additional SAEs will also be reported to sites IRB/EC/REB per local 
regulations. 
9.4.1.12. Blinded studies 
This is an open-label study. 
9.4.1.13. Sponsor Reporting Requirements 
The Sponsor or a legal representative is responsible for notifying the relevant regulatory 
authorities of SAE’s meeting the reporting criteria. 
9.4.1.14. Investigator Reporting Requirements 
Investigators must fulfill all required local regulatory obligations required for the study conduct. 
9.4.2. 
Other Safety Measures 
9.4.2.1. 
Injection-Related Adverse Events 
Injection-related AEs of special interest collected and reported in the asfotase alfa clinical 
development program are injection-associated reactions (IARs) and injection site reactions 
(ISRs). 
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9.4.2.1.1. Injection-Associated Reactions 
Injection-associated reactions are defined as systemic signs or symptoms (eg, generalized 
urticaria or itching, hypotension, or respiratory distress) that occur within 3 hours after study 
drug administration that are assessed by the Investigator as possibly, probably, or definitely 
related to study drug. 
Adverse events that are characterized as IARs may reflect a systemic hypersensitivity reaction 
(eg, combination of 2 or more of the following types of signs or symptoms: generalized urticaria 
or itching, hypotension, difficulty breathing, swelling of the eyelids or lips, or generalized 
edema). These AEs are to be captured as the individual AE(s) that occurred and are not to be 
grouped and recorded with the term “IAR” or “hypersensitivity.” 
For systemic hypersensitivity reactions, the investigational site will collect laboratory samples 
for analysis of the following: 
• Tryptase (serum) 
− Within 1 hour from time of reaction onset, if possible (no longer than 2 hours 
after onset) 
− At 24 hours (or later) from time of reaction onset 
• C5b-9 (EDTA plasma with protease inhibitors [P100 tubes]) 
− Within 24 hours from time of reaction onset 
• Hematology, blood chemistry, and urinalysis 
− Within 3 hours from time of reaction onset 
− At 24 hours from time of reaction onset 
Patients will undergo a one-time pre-dose collection of serum for tryptase analysis on Day 1 
prior to administration of study drug, in order to provide a Baseline tryptase value in case of a 
future IAR. The sample will be drawn only if the patient has no active allergies at the time, and 
will only be analyzed (along with the above assessments) if the patient experiences a subsequent 
acute or severe IAR. If the patient has an ongoing active allergic process on Day 1, the tryptase 
sample should be collected as soon as possible after the resolution of the allergic event. 
Treatment guidelines can be found in the SOM. 
If a patient experiences a systemic hypersensitivity reaction at home, the patient or legal 
representative(s) should call the site as soon as possible to discuss with the Investigator the need 
for medical evaluation in a medical facility. Collection of blood samples for the analyses 
outlined above may be required upon recommendation of the Investigator and availability of 
these tests at the local laboratory. If the patient lives near the investigational site, the medical 
evaluation may be done and blood for the tests may be drawn there. 
For patients who experience moderate or severe IARs, continuation of study drug injections in 
the study will be determined by the Investigator in consultation with the Sponsor’s Medical 
Monitor. In the case of a favorable benefit-risk assessment, where the decision is made to 
continue study drug injections, an individualized pretreatment strategy with antihistamines or 
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steroids will be developed as necessary at the discretion of the Investigator. Should such 
pretreatment medications be used, they should be recorded as concomitant medications. 
All IARs, whether serious or non-serious, must be recorded on the eCRF. If any sign(s) and/or 
symptom(s) of an IAR are considered serious, the Alexion Global Pharmacovigilance group or 
designee must be notified in accordance with the procedures outlined in Section 9.4.1.11. 
9.4.2.1.2. Injection Site Reactions 
Injection site reactions (ISRs) are defined as AEs localized to the site of study drug 
administration that occur at any time during study participation that are assessed by the 
Investigator as possibly, probably, or definitely related to study drug. 
Injection site reactions may occur at any timepoint after study drug administration. There is no 
additional laboratory testing required for ISRs. 
The Investigator is responsible for monitoring for ISRs in patients throughout the duration of the 
study. As part of the study-required physical examinations, Investigators should evaluate 
injection sites for signs of reaction(s). All ISRs, whether non-serious or serious, must be 
recorded on the eCRF. If any ISRs are considered serious, the Alexion Global 
Pharmacovigilance group or designee must be notified in accordance with the procedures 
outlined in Section 9.4.1.11. 
9.4.2.2. 
Anti-Drug Antibodies 
Patients will be monitored for development of antibody production against asfotase alfa (asfotase 
alfa anti-drug antibodies [ADA]) throughout this study (Table 2). Serum will be collected and 
analyzed for the presence of ADA, and if positive further analyzed for titer, neutralizing 
antibodies, and characterization of the response. 
9.4.2.3. 
Pregnancy and Breastfeeding 
The effects of asfotase alfa on conception, pregnancy, and lactation in humans are not known. 
All female patients of childbearing potential and sexually mature males will be required to use a 
medically accepted method of contraception throughout the study and for 3 months following the 
last dose of study drug. Agreement to this requirement will be captured at the Screening visit as 
part of the consent procedure and patients will be followed until 3 months after the last dose of 
study drug.   
If a female patient becomes pregnant during the treatment period of the study, asfotase alfa 
treatment must be immediately discontinued. See Section 9.4.1.10 for details on handling of 
pregnancies during the study. 
9.5. 
Sample Collection and Testing 
Table 2 lists the schedule for sample collections in this study. 
Appendix 14.1 lists the laboratory tests that will be performed for this study.   
Appendix 14.2 provides a summary of the maximum number and volume of invasive samples for 
all sampling during the study.   
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9.5.1. 
Samples for Study Qualification and Health Monitoring 
Blood and urine samples will be collected to determine whether patients meet 
inclusion/exclusion criteria and to monitor patient safety. 
Investigators must document their review of each laboratory safety report. 
Tests are run and confirmed promptly whenever scientifically appropriate. However, when 
scientific circumstances warrant it is acceptable to retain samples to batch the tests run or to 
retain the samples until the end of the study to confirm that the results are valid. Certain samples 
may be retained for a longer period, if necessary, to comply with applicable laws, regulations, or 
laboratory certification standards.  
As blood samples taken for study-related testing are sometimes not entirely depleted for the 
analyses, patients or their legal representative(s) will be given the option to consent to use of the 
remaining portion of these samples for additional research. These samples will be used only for 
Alexion’s scientific research related to exploratory biology and biomarker assessments for 
asfotase alfa treatment and/or HPP. Each sample may continue to be labeled with the patient’s 
study identifiers (ie, patient ID). The patient or legal representative(s) may request that his or her 
samples, if still identifiable, be destroyed at any time; however, any data already collected from 
that sample will still be used for this research. The biological samples will remain the property of 
Alexion, and may be shared with other researchers as long as confidentiality is maintained. 
9.5.2. 
Samples for Immunogenicity  
Blood samples for immunogenicity testing will be collected to determine antibody production 
against asfotase alfa at the visits and times specified in the Schedule of Events (Table 2 and 
Table 3), venous blood samples of approximately 2.5 mL each will be collected to determine the 
serum ADA level. Immunogenicity will be assessed by a validated assay designed to detect ADA 
in the presence of asfotase alfa. Antibodies may be further characterized and/or evaluated for 
their ability to neutralize the activity of asfotase alfa.   
Samples may be stored for a maximum of 15 years following last patient visit for the study at a 
facility selected by the Sponsor to enable further analysis of immune responses to asfotase alfa. 
The duration allows the Sponsor to respond to regulatory requests related to asfotase alfa. 
9.5.3. 
Samples for Drug Concentration Measurements  
At the visits and times specified in the Schedule of Events (Table 2 and Table 3), venous blood 
samples of approximately 2.5 mL each will be collected to determine the serum activity of 
asfotase alfa. Instructions for the collection and handling of blood samples will be provided in 
the Laboratory Manual. The actual date and time (24-hour clock time) of each sampling will be 
recorded. 
Bioanalytical samples collected to measure study drug concentration will be retained for a 
maximum of 1 year following last patient visit for the study. 
9.6. 
Appropriateness of Measurements 
All efficacy and safety assessments included in this study are generally regarded as reliable and 
accurate with respect to the efficacy and safety assessments in individuals with HPP. 
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10. 
DATA QUALITY ASSURANCE 
To ensure accurate, complete, and reliable data, the Sponsor or its representatives will do the 
following: 
• Provide instructional material to the study sites, as appropriate 
• Provide start-up training to instruct the Investigators and study coordinators. This 
training will give instruction on the protocol, the completion of the eCRFs, and study 
procedures. 
• Make periodic visits to the study site 
• Be available for consultation and stay in contact with the study site personnel  
• Review and evaluate eCRF data and use standard computer edits to detect errors in 
data collection 
• Conduct a quality review of the database 
In addition, the Sponsor or its representatives will periodically check a sample of the patient data 
recorded against source documents at the study site. The study may be audited by the Sponsor or 
its representatives, and/or regulatory agencies at any time. Investigators will be given notice 
before an audit occurs. 
To ensure the safety of participants in the study, and to ensure accurate, complete, and reliable 
data, the Investigator will keep records of laboratory tests, clinical notes, and patient medical 
records in the patient files as original source documents for the study. If requested, the 
Investigator will provide the sponsor, applicable regulatory agencies, and applicable 
IRB/IEC/REB(s) with direct access to original source documents. 
10.1. 
Data Capture System 
An EDC system will be used in this study. The site must maintain a separate source for the data 
entered into the EDC system. 
Electronic patient-reported outcome (ePRO) measures or other data reported directly by the 
patient (for example, daily dosing schedule) are entered into an ePRO instrument (for example, 
personal digital assistant [PDA], or by means of IXRS) at the time that the information is 
obtained. The ePRO device will be used to collect date including, but not necessarily limited to, 
dosing data; refer to the Study Operations Manual for further information. In these instances 
where there is no prior written or electronic source data at the site, the ePRO instrument record 
will serve as the source. 
Any data for which the ePRO instrument record will serve to collect source data will be 
identified and documented by each site in that site’s study file. 
All data from the medical records of qualifying patients will be entered into eCRFs designed by 
Alexion or designee. Electronic CRFs will be completed by investigational study site personnel 
or their designee. Electronic CRF completion guidelines describing the procedures for recording 
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data on the eCRFs will be provided to the investigational sites and training on the guideline and 
use of the EDC system will occur prior to eCRF completion. 
Any data for which paper documentation provided by the patient will serve as the source 
document will be identified and documented by each site in that site’s study file. Paper 
documentation provided by the patient may include, for example, a paper diary to collect patient-
reported outcome (PRO) measures. 
11. 
STATISTICS 
Alexion will be responsible for data collection and editing, reviewing and validating all the 
information in the eCRFs, statistical analysis, and generation of the clinical study report. 
Prior to locking the database, all data editing will be completed and decisions regarding the 
evaluability of all patient data for inclusion in the statistical analysis will be made. The rationale 
for excluding any data from the statistical analyses will be prospectively defined, and 
classification of all or part of a patient's data as non-evaluable will be completed and documented 
before the database is locked and before the statistical analysis is begun. The statistical analysis 
will not begin until the entire database is locked and signed off, in accordance with the Standard 
Operating Procedures (SOPs) of the Alexion Biometrics Department. 
Alexion or designee will perform the statistical analysis of the data derived from this study. The 
analysis will be performed using the SAS® statistical software system Version 9.2 or later. 
Pharmacokinetic parameters will be estimated using WinNonlin®5.3 (or higher) (Certara, L.P., 
1699 S Hanley Road, St Louis MO 63144 USA). 
11.1. 
Analysis Populations 
11.1.1. 
Full Analysis Set 
The Full Analysis Set (FAS) consists of all patients who are randomized to treatment and 
received at least 1 dose of study drug and have at least 1 pre-treatment and 1 on-treatment PPi 
result. All analyses of PD/efficacy will be performed based on the FAS. Patients will be included 
in the analyses according to the treatment cohort to which they were randomized, irrespective of 
the treatment they actually received. The efficacy analyses based upon the FAS will be 
considered the primary analysis of efficacy. 
11.1.2. 
Per Protocol Set 
The Per Protocol (PP) population or PP Set consists of all patients in the FAS Population with no 
major protocol deviations. Major protocol deviations will include:  
• Non-compliance with study treatment  
• Not receiving all doses of study drug 
• Not receiving the correct study treatment  
• Failing to meet key (pre-defined) eligibility criteria  
• Other major protocol violations  
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Determination of whether or not a patient will be excluded from the PP Set will be done prior to 
the database lock. All analyses of PD/efficacy will also be performed based on the PP Set. 
Patients will be included in the analyses according to the treatment cohort to which they were 
randomized, irrespective of the treatment they actually received. The efficacy analyses based 
upon the PP Set will be considered secondary analyses of efficacy.  
11.1.3. 
Safety Set 
All patients who receive any amount of study drug treatment will comprise the Safety Set. 
Patients will be considered, for safety analysis, to be in the treatment cohort of the treatment they 
actually received. 
11.1.4. 
Pharmacokinetic Population 
All treated patients for whom the PK profile can be adequately characterized will comprise the 
PK Population. The PK Population will be used for the analysis of PK data. PK analyses will be 
based upon the treatment actually received. 
11.2. 
Efficacy/Pharmacodynamic Endpoints 
11.2.1. 
Primary Efficacy/Pharmacodynamic Endpoint 
The primary efficacy/PD endpoint will be the change in PPi from Baseline to pre-3Prd
P dose in 
Week 9. Baseline and pre-3Prd
P dose Week 9 are defined in Section 11.5.4. 
11.2.2. 
Secondary Efficacy/Pharmacodynamic Endpoints 
The secondary efficacy/PD endpoint will be the change in PLP from Baseline to pre-3Prd
P dose in 
Week 9. Baseline and pre-3Prd
P dose Week 9 are defined in Section 11.5.4. 
11.3. 
Pharmacokinetics 
The PK data from patients will be tabulated and summary statistics will be reported for each 
cohort.  
The following PK parameters will be calculated using non-compartmental methods:  
• Maximum observed serum concentration (C Rmax) 
• Time of maximum observed serum concentration (tRmax)R  
• Area under the concentration-time curve from time zero to time of the last observed 
concentration (AUCRt) 
• Area under the concentration-time curve from time zero to infinity (AUC R∞) 
• Elimination rate constant (kRe) 
• Half-life (tR½) 
Additional PK parameters may be calculated, as appropriate.  
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11.4. 
Safety Endpoints 
Safety variables include the incidence of AEs (includes SAEs; ISRs; IARs; discontinuations due 
to AEs; and drug-related serious and severe AEs), as well as clinical and laboratory tests (clinical 
chemistry, hematology, and urinalysis), vital signs (blood pressure, heart rate, respiratory rate, 
and temperature), physical examinations, renal ultrasound, ophthalmology assessment, 
pregnancy testing (for women of childbearing potential), asfotase alfa anti-drug antibodies 
(ADA), and neutralizing antibodies (nAb). 
11.5. 
Statistical Methods 
All data collected in this study will be documented using summary tables, figures, and patient 
data listings. For categorical variables, frequencies and percentages will be presented for each 
cohort and for the combined cohorts (where appropriate). For continuous variables, descriptive 
statistics (n, mean, median, standard deviation [SD], minimum, maximum) will be presented for 
each cohort and for the combined cohorts (where appropriate). Descriptive statistics for PK 
parameters will include the number of observations, mean, SD, coefficient of variation (CV), 
median, minimum, maximum, geometric mean, and geometric %CV. All hypothesis testing will 
be 2-sided and performed at the 0.05 level of significance. 
Pharmacodynamic/efficacy analyses will be conducted on the FAS, consisting of all treated 
patients with at least 1 pre-treatment and 1 on-treatment PPi value. Additionally, PD/efficacy 
analyses will be conducted on the PP Set. Pharmacokinetic analyses will be conducted on the PK 
population, consisting of all treated patients for whom the PK profile can be adequately 
characterized. Safety analyses will be conducted on the Safety Set, consisting of all patients who 
received at least 1 dose of asfotase alfa.  
For the PD/efficacy analyses, patients will be considered to be in the treatment cohort to which 
they were randomized. For safety and PK analyses, patients will be considered to be in the 
treatment cohort of the treatment they actually received. 
11.5.1. 
Handling of Dropouts/Missing Data 
For each patient, there are 5 pre-treatment baseline samples (-168, -156, -24, -12, and 0h) to be 
collected. The average value will be used for analysis. Therefore, at least 1 pre-treatment 
baseline observation is required for the patient to be included for the assessment of the primary 
PD/efficacy analysis (PPi). If a patient lacks a pre-treatment value they will be excluded from the 
analysis. In addition, patients will be required to have at least 1 on-treatment observation. 
Missing values at the pre-3Prd
P dose Week 9 assessment will be imputed using last observation 
carried forward (LOCF). This imputation will occur only for the primary endpoint.   
Missing or invalid safety data will not be replaced.  
11.5.2. 
Demographics and Baseline Characteristics 
Demographic and baseline characteristics including gender, ethnicity, age at study treatment 
initiation, age at initial symptoms, age at diagnosis, and time since initial symptom onset will be 
summarized by cohort and overall using descriptive statistics (n, mean, standard deviation, 
median, minimum, and maximum) or frequencies and percentages, as appropriate. All data will 
be presented in by-patient data listings. 
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Medical/surgical history will be summarized descriptively by cohort and overall using counts 
and percentages and will also be presented in by-patient data listings. 
Concomitant medication/therapy data and pre-treatment medication data will be presented in 
listings. Concomitant medications will also be summarized in tabular form by cohort and overall 
using frequencies and percentages. The WHO Drug dictionary will be used to code the 
medications. 
11.5.3. 
Patient Accountability 
All patients randomized to treatment will be included in the summary of patient disposition and 
accountability overall and by cohort. A listing of patients indicating randomization to treatment, 
attendance at each visit, discontinuation from the study, and completion of the study will also be 
generated. 
11.5.4. 
Efficacy/Pharmacodynamic Analyses 
11.5.4.1. Primary Efficacy/Pharmacodynamic Endpoint 
The primary efficacy/PD endpoint will be the change from PPi Baseline to pre-3Prd
P dose Week 9. 
Baseline is defined as the average of all available Run-in Period assessments on or prior to first 
SC injection with asfotase alfa. Pre-3Prd
P dose Week 9 is defined as the value obtained prior to the 
third dose during Week 9. To assess differences between cohorts, the Wilcoxon rank-sum test 
will be used. A fixed sequence testing procedure will be performed with the comparison of the 
9.0 mg/kg/week cohort compared to the 1.5 mg/kg/week cohort being performed first, and the 
hypothesis testing for the second comparison 6.0 mg/kg/week cohort compared to the 
1.5 mg/kg/week cohort only being performed if the null hypothesis is rejected for the previous 
comparison at a significance level of 0.05. The primary endpoint will be met if the null 
hypothesis is rejected for both comparisons at a significance level of 0.05. Additionally, the shift 
in the distributions and 95% confidence interval (CI) for the above comparisons will be reported 
using the Hodges-Lehmann-Sen estimate and the exact confidence limits reported.    
As secondary analyses, descriptive statistics for absolute PPi level and the change from Baseline 
will be summarized at all study timepoints by cohort. Within cohort, the change from Baseline to 
all study timepoints will be analyzed using the Wilcoxon signed-rank test. 
Additionally, a restricted maximum likelihood (REML)-based repeated measures mixed model 
will be fit to estimate the change from Baseline in PPi at each pre-dose timepoint during the 
study period and test whether the change differs from zero at each timepoint. The analysis will 
include the fixed, categorical effect of visit. An unstructured covariance structure will be used to 
model the within-patient errors. If this analysis fails to converge, the following structures will be 
tested and the final covariance structure will be determined by Akaike's information criterion 
(AIC): first-order autoregressive, compound symmetry, and Toeplitz. The Kenward-Roger 
approximation will be used to estimate denominator degrees of freedom. The estimate of change 
from Baseline at defined visits will be provided, along with 95% CIs and p-values. The treatment 
effect will also be explored. 
Individual and mean concentration versus time curves will be presented. Additional analysis of 
PPi data may be performed if considered useful.  
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11.5.4.2. Secondary Efficacy/Pharmacodynamic Endpoints 
For the secondary/PD endpoint, PLP change from Baseline to pre-3Prd
P dose Week 9, similar 
methods as for PPi will be employed. 
11.5.5. 
Statistical Methods: Pharmacokinetics Analysis 
Following dosing at Week 1, Day1, mean serum asfotase alfa concentrations versus nominal 
time, and individual serum asfotase alfa concentrations versus actual time will be graphically 
presented for both linear and semi-log scales. The individual serum concentration data for 
patients in each cohort, with actual sampling dates and times will be used to derive the PK 
parameters by non-compartmental analyses using WinNonlin®5.3 (or higher) (Certara, L.P., 
1699 S Hanley Road, St Louis MO 63144 USA). The following PK parameters will be 
calculated and summary statistics reported by cohort and by patient: CRmax
R, tRmax
R, AUCRt, 
RAUC R∞
R, 
kRe
R, and tR½
R. Both the single-dose and multiple-dose PK will be characterized. Descriptive 
statistics (mean, SD, CV, median, minimum, maximum, geometric mean, and geometric %CV) 
of the serum concentration and PK parameters will be presented. An attainment of asfotase alfa 
PK steady state will be evaluated. Dose proportionality and time linearity assessment may be 
considered. Graphical displays of PK data will be presented as appropriate.  
Relationships between PK and PD parameters may be explored if considered appropriate. The 
PK and PD data from this study may be combined with data from other studies. 
11.5.6. 
Statistical Methods: Safety Variables 
Summaries for all safety variables will be computed and displayed by cohort.  
11.5.6.1. Safety Variable: Adverse Events 
Safety assessments will be based on the incidence of AE reports. Adverse events will be coded 
using MedDRA and will be summarized by System Organ Class (SOC) and Preferred Term 
(PT). A detailed listing of patients who experience AEs and SAEs will be presented. Adverse 
event severity will be categorized as mild, moderate, or severe. The highest severity will be 
assigned to a patient should more than 1 occurrence of the same AE be reported with a different 
severity. Relationships of the AE to treatment will be categorized as not related/unrelated, 
unlikely related, possibly related, probably related, or definitely related. The highest level of 
association will be reported in patients with differing relationships for the same AE. A listing of 
AEs for all patients will be provided. A separate listing for patients who withdraw from the study 
due to AEs will be provided. The incidence of AEs will be tabulated by severity, and by 
relationship to treatment. The incidence of AEs leading to study discontinuation will also be 
summarized. Adverse events occurring on the day of infusion will be summarized, and a separate 
listing will be produced for these AEs. All summary tables and data listings of AEs will be 
presented by cohort.   
11.5.6.2. Safety Variable: Injection-Associated Reactions 
Injection-associated reactions will be analyzed in the same manner as AEs. 
11.5.6.3. Safety Variable: Injection Site Reactions 
Injection site reactions will be analyzed in the same manner as AEs. 
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11.5.6.4. Safety Variable: Laboratory Tests Including Clinical Hematology, Chemistry, 
and Urinalysis 
Actual values and changes from Baseline in quantitative lab values will be summarized by study 
cohort and timepoint using descriptive statistics. All laboratory values will be classified as 
normal, below normal, or above normal based on normal ranges supplied by the laboratory. An 
analysis of laboratory values will be based on frequencies of abnormal values and frequencies of 
clinically significant abnormal values and will be presented in tabular form by cohort. Shift 
tables will be produced. All data will be presented in listings by cohort along with individual 
patient listings for those patients with clinically significant abnormal laboratory values. 
Graphical displays will be presented as appropriate. 
11.5.6.5. Safety Variable: Asfotase Alfa Anti-drug Antibody 
Shift tables will be produced to show changes from Baseline to scheduled visits in the presence 
or absence of asfotase alfa ADA. For patients with positive antibodies, the titer level will be 
summarized using descriptive statistics, and the presence or absence of neutralizing antibodies 
will be summarized using counts and percentages. These analyses will be performed by cohort. 
Graphical displays will be presented as appropriate.     
11.5.6.6. Safety Variables: Vital Signs, Physical Examinations, Renal Ultrasounds, and 
Ophthalmology Assessments 
Actual values and changes from Baseline in vital signs (blood pressure, heart rate, respiratory 
rate, and temperature) will be summarized by cohort and timepoint using descriptive statistics. 
Physical examination (including weight), renal ultrasound, and ophthalmology findings will be 
summarized by cohort and timepoint using counts and percentages. Listings of abnormal results 
will be provided. 
11.5.7. 
Statistical Methods: Study Drug Administration 
Study drug administration data will be presented by cohort in a listing. 
11.5.8. 
Statistical Methods: Power and Sample Size 
A sample size of 9 patients per cohort (27 patients total) will provide sufficient power (>80%) to 
detect a difference of 2.3 µM between the 9.0 mg/kg/week cohort compared to the 
1.5 mg/kg/week cohort, and between the 6.0 mg/kg/week cohort compared to the 
1.5 mg/kg/week cohort in the change from Baseline to pre-3Prd
P dose in Week 9 PPi (assuming a 
SD of 1.5 µM). This is based upon the use of a 2-sided, 2-sample t-test analyzed using a fixed 
sequence testing procedure with the comparison of the 9.0 mg/kg/week cohort compared to the 
1.5 mg/kg/week cohort being performed first, and the hypothesis testing for the second 
comparison 6.0 mg/kg/week cohort compared to the 1.5 mg/kg/week cohort only being 
performed if the null hypothesis is rejected for the previous comparison at a significance level of 
0.05.  
A sample size of 6 patients per cohort (18 patients total) will provide sufficient power (>90%) to 
detect a difference of 3.2 µM (SD 1.5 µM) using the same assumptions and fixed sequence 
testing procedure. A difference of 3.2 µM (SD 1.5 µM) was observed in adult pediatric-onset 
treated patients versus controls in Study ENB-009-10 for the change from baseline to Week 6 in 
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PPi. Between 6 and 9 patients per cohort (18 and 27 patients total) will give sufficient power to 
detect a mean difference of 2.3 to 3.2 µM (SD 1.5 µM). 
11.5.9. 
Statistical Methods: Multiplicity 
For the primary endpoint, a fixed sequence testing procedure will be used to control the Type I 
error rate. Statistical adjustment of p-values will not be performed.  
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16 November 2015 
12. 
INFORMED CONSENT, ETHICAL REVIEW, AND 
REGULATORY CONSIDERATIONS 
12.1. 
Informed Consent 
The Investigator is responsible for ensuring that the patient understands the potential risks and 
benefits of participating in the study, including answering any questions the patient may have 
throughout the study and sharing in a timely manner any new information that may be relevant to 
the patient’s willingness to continue participation in the study. 
The Informed Consent Form (ICF) will be used to explain the potential risks and benefits of 
study participation to the patient in simple terms before the patient is entered into the study, and 
to document that the patient is satisfied with his or her understanding of the risks and benefits of 
participating in the study and desires to participate in the study. 
The Investigator is responsible for ensuring that informed consent is given by each patient or 
legal representative. This includes obtaining the appropriate signatures and dates on the ICF prior 
to the performance of any protocol procedures and prior to the administration of study drug. 
12.2. 
Ethical Review 
The Sponsor or its representatives must approve all ICFs before they are used at investigational 
sites(s). All ICFs must be compliant with the International Council on Harmonisation (ICH) 
guidelines on GCP.   
Documentation of IRB/IEC/REB approval of the protocol and the ICF must be provided to the 
Sponsor before the study may begin at the investigational site(s). The IRB/IEC/REB(s) will 
review the protocol as required. 
The study site’s IRB/IEC/REB(s) should be provided with the following at a minimum: 
• The current IB and updates during the course of the study 
• ICF 
• Relevant curricula vitae 
12.3. 
Regulatory Considerations 
This study will be conducted in accordance with: 
1. Consensus ethics principles derived from international ethics guidelines, including the 
Declaration of Helsinki and Council for International Organizations of Medical Sciences 
(CIOMS) International Ethical Guidelines 
2. The ICH GCP Guideline [E6] 
3. Applicable laws and regulations 
The Investigator or designee will promptly submit the protocol to applicable IRB/IEC/REB(s). 
Some of the obligations of the Sponsor may be assigned to a third party organization (TPO). 
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16 November 2015 
An identification code assigned by the IXRS to each patient will be used in lieu of the patient’s 
name to protect the patient’s identity when reporting AEs and/or other study-related data. 
12.3.1. 
Investigator Information 
Physicians with experience in metabolic bone disease will participate as investigators in this 
clinical study. 
12.3.2. 
Protocol Signatures 
The Sponsor’s responsible medical officer will approve the protocol, confirming that, to the best 
of his or her knowledge, the protocol accurately describes the planned design and conduct of the 
study. 
After reading the protocol, each Investigator will sign the protocol signature page and send a 
copy of the signed page to a Sponsor representative. 
12.3.3. 
Final Clinical Study Report Signature 
The Principal Investigator will sign the final clinical study report for this study, indicating 
agreement that, to the best of his or her knowledge, the report accurately describes the conduct 
and results of the study. 
The Sponsor’s responsible medical officer and statistician will approve the final clinical study 
report for this study, confirming that, to the best of his or her knowledge, the report accurately 
describes the conduct and results of the study. 
12.4. 
Publication Policy 
The full terms regarding publication of the results of this study are outlined in the Clinical Study 
Agreement, Statement of Agreement, or the Master Clinical Study Agreement. Publication is 
permitted only after multi-center results are available and all disclosure requirements for clinical 
study registries have been met. Any data to be submitted for publication, including abstract 
submissions or presentations, are required to be submitted to Alexion for review at least 30 days 
prior to submission. 
The process for identifying the coordinating Investigator will include evaluation of relevant 
criteria including, but not limited to: 1) enrollment of the greatest number of patients; 2) clinical 
experience with HPP; 3) demonstrated understanding of, and adherence to, this protocol; and 
4) contribution to study development and/or implementation. 
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16 November 2015 
13. 
LIST OF REFERENCES 
 
 
 1.  Berkseth KE, Tebben PJ, Drake MT, Hefferan TE, Jewison DE, Wemers RA. Clinical 
spectrum of hypophosphatasia diagnosed in adults. Bone 2013;54:21-7. 
 2.  Kasugai S, Fujisawa R, Waki Y, Miyamoto K, Ohya K. Selective drug delivery system to 
bone: small peptide (Asp)6 conjugation. J.Bone Miner.Res. 2000 May;15(5):936-43. 
 3.  Nishioka T, Tomatsu S, Gutierrez GA, Miyamoto K, Trandafirescu GG, Lopez PLC, et al. 
Enhancement of drug delivery to bone: Characterization of human tissue-nonspecific 
alkaline phosphatase tagged with an acidic oligopeptide. Molecular Genetics and 
Metabolism 2006 Feb 23;88(3):244-55. 
 4.  Whyte MP. Hypophosphatasia. In: Thakker RV, Whyte MP, Eisman J, et al., editors. 
Genetics of Bone Biology and Skeletal Disease. San Diego: Academic Press; 2013. p. 337-
60. 
 5.  Whyte MP, Mahuren JD, Vrabel LA, Coburn SP. Markedly Increased Circulating 
Pyridoxal-5'-Phosphate Levels in Hypophosphatasia. J Clin Invest 1985;76:752-6. 
 
 
 
 
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16 November 2015 
14. 
APPENDICES 
14.1. 
Study AA-HPP-208: Clinical Laboratory Tests 
 
Protocol AA-HPP-208: Clinical Laboratory Tests 
Hematologya: 
Clinical Chemistrya: 
Erythrocytes  
Sodium 
Hemoglobin 
Potassium 
Hematocrit 
Total bilirubin 
URed blood cell indices 
Direct bilirubin 
Mean corpuscular volume reticulocytes 
Indirect bilirubin 
Ret. mean corpuscular hemoglobin 
Alkaline phosphatase 
Ret. corpuscular hemoglobin content 
Alanine aminotransferase (ALT) 
Reticulocyte distribution width 
Aspartate aminotransferase (AST) 
UWhite blood cell count and differential 
Blood urea nitrogen (BUN) 
Neutrophils, segmented 
Creatinine 
Lymphocytes 
Urea 
Monocytes 
Calcium 
Eosinophils 
Phosphate 
Basophils 
Glucose, fasting 
Platelets 
Albumin 
Mean platelet volume 
Protein 
Urinalysisa: 
Carbon dioxide 
pH 
Magnesium 
Protein 
Chloride 
Glucose 
 
Ketones 
Other Laboratory TestsPa 
Bilirubin 
Parathyroid hormone, intact 
Erythrocytes 
25-OH Vitamin D 
Leukocyte esterase 
 
Nitrite 
Pregnancy Test (female patients only)b,c 
Urobilinogen 
Choriogonadotropin Beta 
Calcium 
 
Calcium/Creatinine 
 
Microscopy 
 
Abbreviations: ret. = reticulocyte 
a  
Assayed by Alexion-designated laboratory 
b  
Results will be confirmed at Screening 
c  
Local or Investigator-designated laboratory 
 
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16 November 2015 
14.2. 
Study AA-HPP-208: Sampling Summary 
This table summarizes the approximate number of samples and volumes for all sampling and 
tests during the study. Fewer samples may actually be taken, but this will not require a protocol 
amendment. 
 
Protocol AA-HPP-208: Sampling Summary per Patient 
 
 
Purpose 
 
Sample 
Type 
 
Approximate 
Amount per Sample 
Approximate 
Number 
Samples 
 
Approximate 
Total Amount 
Screening testsPa 
Blood 
2.5 mL 
6 
15.0 mL 
Standard laboratory testsPa 
Blood 
2.5 mL 
20 
50.0 mL 
Pharmacokinetic samples 
Blood 
2.5 mL 
46 
115.0 mL 
Pharmacodynamic samplesPb 
Blood 
2.0 mL 
96 
192.0 mL 
Immunogenicity samples 
Blood 
2.5 mL 
12 
30.0 mL 
Total  
Blood 
12.0 mL 
182 
402.0 mL 
Pa
P Additional samples may be drawn if needed for safety purposes. 
Pb
P Plasma inorganic pyrophosphate (PPi) and plasma pyridoxal-5’ phosphate (PLP) 
 
 
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SAP_001.pdf: 
A Phase2A, Randomized, Multicenter, Open-label 
Pharmacokinetic, and Dose Response Study of Asfotase Alfa 
in Adult Patients with Pediatric-onset Hypophosphatasia 
 
 
Unique Protocol ID: 
AA-HPP-208 
NCT Number: 
NCT02797821 
EudraCT Number:  
2015-003131-35 
Date of Statistical Analysis 
Plan:  
28 June 2017 
 


 
Alexion Pharmaceuticals, Inc. 
 
 
 
STATISTICAL ANALYSIS PLAN 
 
 
 
 
 
PROTOCOL NUMBER: AA-HPP-208 
 
 
 
 A PHASE 2A, RANDOMIZED, MULTICENTER, OPEN-LABEL, 
PHARMACOKINETIC, AND DOSE RESPONSE STUDY OF ASFOTASE 
ALFA IN ADULT PATIENTS WITH PEDIATRIC-ONSET 
HYPOPHOSPHATASIA 
 
 
 
Author: 
 
Date: June 28, 2017 
Version: 2.0 Final 
PPD


PPD


Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
2. 
TABLE OF CONTENTS, LIST OF TABLES, AND LIST OF 
FIGURES  
TABLE OF CONTENTS 
1. 
APPROVAL SIGNATURES .......................................................................................2 
2. 
TABLE OF CONTENTS, LIST OF TABLES, AND LIST OF FIGURES .................3 
3. 
LIST OF ABBREVIATIONS AND DEFINITIONS OF TERMS...............................6 
4. 
DESCRIPTION OF THE PROTOCOL .......................................................................7 
4.1. 
Changes from Analyses Specified in the Protocol .......................................................7 
4.2. 
Changes from Analyses Specified in the Previous Version of the Statistical 
Analysis Plan ................................................................................................................7 
5. 
DEFINITIONS .............................................................................................................9 
5.1. 
Efficacy/Pharmacodynamics ........................................................................................9 
5.1.1. 
Primary Endpoint ..........................................................................................................9 
5.1.2. 
Secondary Endpoint ......................................................................................................9 
5.2. 
Pharmacokinetic Endpoints ..........................................................................................9 
5.3. 
Safety ............................................................................................................................9 
5.3.1. 
Adverse Events (AEs) ...................................................................................................9 
5.3.2. 
Vital Signs ....................................................................................................................9 
5.3.3. 
Laboratory Assessments .............................................................................................10 
5.3.4. 
Physical Examinations ................................................................................................10 
5.3.5. 
Renal Ultrasound ........................................................................................................10 
5.3.6. 
Ophthalmology Assessment .......................................................................................10 
5.3.7. 
Urine Pregnancy Test .................................................................................................10 
5.3.8. 
Anti-Drug Antibodies (ADA) and Neutralizing Antibodies (NAb) ...........................10 
6. 
DATA SETS ANALYZED (STUDY POPULATIONS) ...........................................13 
6.1. 
Full Analysis (FA) Set ................................................................................................13 
6.2. 
Per Protocol (PP) Set ..................................................................................................13 
6.3. 
Safety Set ....................................................................................................................13 
6.4. 
PK Analysis Set ..........................................................................................................13 
7. 
STATISTICAL ANALYSIS ......................................................................................14 
7.1. 
Study Patients .............................................................................................................14 
7.1.1. 
Disposition of Patients ................................................................................................14 
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Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
7.1.2. 
Protocol Deviations ....................................................................................................14 
7.1.3. 
Demographics, Disease Characteristics, and History .................................................15 
7.1.3.1. 
Demographics .............................................................................................................15 
7.1.3.2. 
Disease Characteristics ...............................................................................................15 
7.1.3.3. 
Medical History and Baseline Physical Examination .................................................16 
7.1.4. 
Prior and Concomitant Medications / Therapies ........................................................16 
7.2. 
Efficacy/Pharmacodynamic Analyses ........................................................................16 
7.2.1. 
Primary Endpoint ........................................................................................................16 
7.2.1.1. 
Handling of Dropouts or Missing Data ......................................................................17 
7.2.1.2. 
Subgroup Analysis ......................................................................................................18 
7.2.1.3. 
Multicenter Studies .....................................................................................................18 
7.2.1.4. 
Hypothesis Testing and Significance Level ...............................................................18 
7.2.1.5. 
Sensitivity Analyses ....................................................................................................18 
7.2.2. 
Secondary Endpoint ....................................................................................................18 
7.2.3. 
Tertiary Analyses ........................................................................................................19 
7.2.4. 
Other Efficacy Analyses .............................................................................................19 
7.2.5. 
Pharmacokinetic and Pharmacodynamic Analyses ....................................................19 
7.3. 
Safety Analyses ..........................................................................................................19 
7.3.1. 
Study Duration, Treatment Compliance, and Exposure .............................................19 
7.3.2. 
Adverse Events (AEs) .................................................................................................20 
7.3.2.1. 
Overall Summary of Adverse Events .........................................................................20 
7.3.2.2. 
AEs by SOC and PT ...................................................................................................20 
7.3.2.3. 
AEs by PT ...................................................................................................................20 
7.3.2.4. 
AEs and SAEs by SOC, PT, and Relationship ...........................................................21 
7.3.2.5. 
AEs by SOC, PT, and Severity ...................................................................................21 
7.3.2.6. 
Deaths .........................................................................................................................21 
7.3.2.7. 
Adverse Events of Special Interest .............................................................................21 
7.3.3. 
Other Safety ................................................................................................................22 
7.3.3.1. 
Analyses for Laboratory Tests ....................................................................................22 
7.3.3.2. 
Vital Signs ..................................................................................................................22 
7.3.3.3. 
Physical Examination .................................................................................................22 
7.3.3.4. 
Renal Ultrasound ........................................................................................................23 
7.3.3.5. 
Ophthalmology Assessment .......................................................................................23 
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Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
7.3.3.6. 
Pregnancy ...................................................................................................................23 
7.3.3.7. 
Anti-Drug Antibodies and Neutralizing Antibodies ...................................................23 
8. 
REFERENCES ...........................................................................................................26 
9. 
APPENDICES ............................................................................................................27 
9.1. 
Protocol Schedules of Events .....................................................................................27 
9.2. 
Sample Size, Power, and Randomization ...................................................................30 
9.3. 
Technical Specifications for Derived Variables .........................................................31 
 
 
 
LIST OF TABLES 
Table 1: 
Abbreviations and acronyms ........................................................................................6 
Table 2: 
Protocol Schedule of events........................................................................................27 
Table 3: 
Protocol schedule of events for Pharmacokinetic, Pharmacodynamic, and 
Immunogenicity Assessments ....................................................................................29 
Table 4: 
Values Used for Observations under the Lower Limit of Quantification 
(LLOQ) .......................................................................................................................33 
 
 
 
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Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
3. 
LIST OF ABBREVIATIONS AND DEFINITIONS OF TERMS 
The following abbreviations and acronyms are used in this SAP.  
Table 1: 
Abbreviations and acronyms 
Abbreviation or acronym 
Explanation 
ADA 
Anti-drug antibodies 
AE 
Adverse event 
AESI 
Adverse events of special interest 
ALP 
alkaline phosphatase 
ANCOVA 
analysis of covariance 
ATC 
anatomic class 
CI 
Confidence Interval 
CS 
Clinically significant 
FA 
Full Analysis 
HPP 
Hypophosphatasia 
IAR 
Injection associated reaction 
ISR 
Injection site reaction 
kg 
kilogram 
LOCF 
Last Observation Carried Forward 
MedDRA 
Medical Dictionary for Regulatory Activities 
mg 
milligram 
mL 
milliliter 
mmHg 
millimeters of mercury 
NAb 
Neutralizing antibodies 
OC 
Observed Case 
PD 
Pharmacodynamic 
PK 
Pharmacokinetic 
PP 
Per Protocol 
PLP 
pyridoxal 5′-phosphate 
PPi 
inorganic pyrophosphate 
PT 
Preferred Term (MedDRA) 
PTAEs 
Pre-Treatment Adverse Events 
PTH 
Parathyroid Hormone 
REML 
restricted maximum likelihood 
SAE 
Serious adverse event 
SAP 
Statistical Analysis Plan 
SAS® 
Statistical Analysis Software® 
SD 
standard deviation 
SOC 
System Organ Class (MedDRA) 
TEAEs 
Treatment-Emergent Adverse Events 
TNSALP 
tissue-nonspecific alkaline phosphatase 
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Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
4. 
DESCRIPTION OF THE PROTOCOL 
The AA-HPP-208 study, “A Phase 2a, Randomized, Multicenter, Open-Label, Pharmacokinetic, 
and Dose Response Study of Asfotase Alfa in Adult Patients with Pediatric-Onset 
Hypophosphatasia” is a post-authorization commitment for European Medicines Agency(EMA) 
to evaluate the pharmacokinetics (PK) and pharmacodynamics (PD) of asfotase alfa following 
administration of a range of dose regimens that encompasses the dose proven to be effective in 
children (6.0 milligram [mg]/kilogram[kg]/week) in adult patients with pediatric-onset 
hypophosphatasia (HPP). A secondary objective is to evaluate the safety and tolerability of 
asfotase alfa in adult patients with pediatric-onset HPP. The protocol can be referenced for 
additional details. The schedule of events is attached in Appendix 9.1 of this statistical analysis 
plan (SAP).    
4.1. 
Changes from Analyses Specified in the Protocol 
The primary analysis of the primary endpoint, the change in PPi from Baseline to pre-3rd dose 
Week 9 has been changed from non-parametric exact Wilcoxon rank-sum test into a restricted 
maximum likelihood (REML)-based repeated measures mixed model; while non-parametric 
exact Wilcoxon rank-sum test becomes a supportive analysis. 
The Per Protocol Set criteria for study drug compliance has been modified as 100% compliance 
(i.e. all doses of study drug) is too restrictive. A slightly revised definition will be utilized 
requiring that patients receive 100% of study drug as planned on Weeks 8 and 9, and at least 
80% of study drug overall as specified in the protocol. 
All prior and concomitant medications and therapies must be collected from 30 days prior to 
study entry up until the final study visit. The protocol has inconsistent description of the process 
for the collection of Concomitant medications and therapies in Table 2, footnote 9 and Section 
8.7; this is being clarified with an administrative letter. 
4.2. 
Changes from Analyses Specified in the Previous Version of the 
Statistical Analysis Plan   
This document describes the SAP for final data analyses for the study. The following additions 
since the previous version 1.0 of the final SAP will apply:  
• The primary analysis of the primary endpoint has been changed, as described in 
Section 4.1. Analysis of covariance (ANCOVA) will be added as sensitivity analyses. 
A repeated measures mixed model with fixed, categorical effect of visit will be 
replaced by the same model with the fixed, categorical effect of visit, adjusted for 
baseline PPi. 
• Sensitivity analyses may be employed to exclude biologically implausible outliers in 
PPi and PLP. 
• The following Adverse Events of Special Interest (AESI) will be added for 
consistency across the asfotase afa development program: 
o Ectopic calcification 
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Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
o Lipodystrophy  
o Craniosynostosis  
o Chronic hepatitis  
• Analyses on anti-drug antibody (ADA) status and neutralizing antibody (NAb) status 
at Baseline and post-Baseline will be added. Time to first ADA positive, ADA 
positive continuously, ADA peak titer, ADA high titer category (>128) and NAb 
positive will also be summarized. 
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
5. 
DEFINITIONS 
5.1. 
Efficacy/Pharmacodynamics  
5.1.1. 
Primary Endpoint 
The change in inorganic pyrophosphate (PPi) from Baseline to pre-3rd dose Week 9. Baseline is 
defined as the average of all available pre-dose PPi assessments prior to first SC injection with 
asfotase alfa (-168, -156, -24, -12h, and pre-dose Day 1). Pre-3rd dose Week 9 is defined as the 
value obtained prior to the 3rd dose during Week 9. 
5.1.2. 
Secondary Endpoint 
The change in pyridoxal 5′-phosphate (PLP) from Baseline to pre-3rd dose Week 9. Baseline is 
defined as the average of all available pre-dose assessments prior to first SC injection with 
asfotase alfa (-168, -156, -24, -12h, and pre-dose Day 1). Pre-3rd dose Week 9 is defined as the 
value obtained prior to the 3rd dose during Week 9. 
5.2. 
Pharmacokinetic Endpoints 
Pharmacokinetic endpoints and analysis will be discussed in a separate PK analysis plan.    
5.3. 
Safety 
Safety endpoints will include: adverse events (AEs), vital signs, laboratory assessments, physical 
examination, renal ultrasound, and ophthalmology examination, urine pregnancy tests, and 
antibodies.  Each is described in further detail below.      
5.3.1. 
 Adverse Events (AEs) 
Adverse events are defined in Protocol Section 9.4.1.  This includes serious adverse events 
[SAEs], injection site reactions [ISRs], injection associated reactions [IARs], discontinuations 
due to AEs, drug-related serious and severe AEs. Also refer to Appendix 9.3 of this SAP for 
special handling of AEs. 
Adverse events of special interest (AESI) include: ISR, Hypersensitivity (IAR), ectopic 
calcification, lipodystrophy, craniosynostosis, and chronic hepatitis.  The AESI of ISR and  
hypersensitivity (IAR) will be identified by investigators as captured on case report forms.  They 
will be supplemented by additional events identified by an Alexion clinical review and which are 
considered to be at least possibly related to study drug.  The AESI of ectopic calcification, 
lipodystrophy, craniosynostosis, and chronic hepatitis will be identified by an Alexion clinical 
review irrespective of the event relationship to study drug.  
5.3.2. 
Vital Signs 
The following vital signs will be recorded at the times specified in Appendix 9.1: systolic and 
diastolic blood pressure (millimeters of mercury [mmHg]), heart rate (beats/minute), respiratory rate 
(breaths/minute), and temperature (degrees Celsius [°C] or degrees Fahrenheit [°F]). On dosing days 
in the clinic or under medical supervision at home, vital signs will be taken within 10 minutes 
before study drug injection. 
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Statistical Analysis Plan 
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28 Jun 2017, Version 2.0 Final 
5.3.3. 
Laboratory Assessments 
Serum chemistry, hematology, and urinalysis testing will be performed at the times specified in 
Appendix 9.1. Specific laboratory assessments are provided in Appendix 14.1 of the protocol. 
Laboratory testing will also include Vitamin D, serum parathyroid hormone (PTH), and urine 
Ca:Creatinine at the times specified in Appendix 9.1. A central laboratory (Covance) will be used 
for laboratory testing and Clinical Significance (CS) will be assigned by the investigator. 
In addition, a serum sample for tryptase will be collected pre-dose on Day 1 and analyzed if the 
patient experiences a subsequent Hypersensitivity (IAR). In the case of systemic hypersensitivity 
reactions, the investigational site will collect laboratory samples for analysis of the following: 
• Tryptase within 1 hour from time of reaction onset, if possible (no longer than 2 hours after 
onset) and at 24 hours (or later) from time of reaction onset  
• C5b-9 within 24 hours from time of reaction onset  
• Hematology, blood chemistry, and urinalysis within 3 hours from time of reaction onset and at 
24 hours from time of reaction onset  
Finally, HPP genetic testing will also be performed at entry into the study.  
5.3.4. 
Physical Examinations 
At Screening and Baseline visits, a complete physical examination will be performed. Thereafter, 
limited physical examinations (based on the patient’s signs/symptoms) may be performed at the 
times specified in Appendix 9.1 using a standardized form with a checklist of items: general 
appearance; skin; head; ear; eye; nose; throat; neck; lymph nodes; chest; heart; abdominal cavity; 
limbs; central nervous system; and musculoskeletal. All physical examinations (complete and 
limited) will include weight (using a calibrated scale) and examination of asfotase alfa injection 
sites for potential reaction(s). The Screening and Baseline physical examination will include 
height (using a wall-mounted standiometer). 
5.3.5. 
Renal Ultrasound 
A renal ultrasound will be performed at the times specified in Appendix 9.1 to assess for the 
presence of nephrocalcinosis. 
5.3.6. 
Ophthalmology Assessment 
A full ophthalmology examination will be performed at the times specified in Appendix 9.1. The 
examination will assess for papilledema and signs of ectopic calcification, and will include 
assessments of visual acuity; adnexa; and slit-lamp biomicroscopy with examination of anterior 
chamber, lens, conjunctiva, cornea, fundus, and other. 
5.3.7. 
Urine Pregnancy Test 
Pregnancy data will be performed in all female patients of childbearing potential. 
5.3.8. 
Anti-Drug Antibodies (ADA) and Neutralizing Antibodies (NAb)  
Patients will be monitored for development of antibody production against asfotase alfa (asfotase alfa 
ADA) throughout this study at the times specified in Appendix 9.1. Serum will be collected and 
analyzed for the presence of ADA, and if positive, further analyzed for titer and NAb. 
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
The following definitions will be applied to categorize ADA and NAb post-baseline results:    
• ADA positive status 
− Positive (Ever) 
Patients who had at least 1 positive post-baseline value for ADA 
− Negative (Always) 
Patients who never had a positive post-baseline value for ADA 
• ADA continuously positive status (evaluated in the exposure based analysis only) 
− Continuously Positive Criteria: 
To be continuously positive a patient must have achieved, and sustained, 
uninterrupted positive results for ADA during and through the end of their 
series of post-baseline ADA measures. At a minimum, patients must be 
positive for the last 2 post-baseline measures of all time points when patients 
were tested for ADAs (e.g., being positive only at the last measure is not 
sufficient to confer continuously positive status). 
Patients whose ADA Status was “Positive (Ever)” and had ADA values that 
met the Continuously Positive Criteria described above.   
− Not Continuously Positive 
Patients whose ADA Status was “Negative (Always)”, or 
Patients whose ADA Status was “Positive (Ever)” and had ADA values that 
did not met the Continuously Positive Criteria described above.   
• ADA high and low titer status (evaluated in the exposure based analysis only)  
− High Titer 
Patients whose ADA Status was “Positive (Ever)” and whose maximum post-
baseline value for ADA was > 128. 
− Low Titer 
Patients whose ADA Status was “Positive (Ever)” and whose maximum post-
baseline value for ADA was <= 128. 
• NAb positive status 
− NAb Positive Criteria: 
Neutralizing antibody subgroups will be determined using the NAb percent 
inhibition levels where < 4.478 will be considered “Negative” and >=4.478 
will be considered “Positive”. 
NAb positive status may only be determined for observations that were 
concurrently positive for ADA.  Accordingly, all observations where patients 
were negative for ADAs will automatically set the NAb status to negative and 
any analyses of NAb inhibition will also be omitted. 
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Statistical Analysis Plan 
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28 Jun 2017, Version 2.0 Final 
− Positive (Ever) 
Patients who had at least 1 positive post-baseline value for NAb 
− Negative (Always) 
Patients who never had a positive post-baseline value for NAb 
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Statistical Analysis Plan 
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6. 
DATA SETS ANALYZED (STUDY POPULATIONS) 
6.1. 
Full Analysis (FA) Set 
Patients who have been randomized and received at least one dose of study drug that have at 
least one pre-treatment and one on-treatment PPi result will be included in the FA set. Patients 
will be included in the analyses according to the treatment cohort to which they were randomized, 
irrespective of the treatment they actually received. 
6.2. 
Per Protocol (PP) Set 
Patients meeting the definition of FA Set (see above) and who are without major protocol 
deviations will be included in the PP Set. Major protocol deviations will include:  
• Non-compliance with study treatment; compliance for a single dose will be defined as receiving the 
assigned cohort dose with a 10% window around expected mg administered.  
• Not receiving all doses of study drug during Weeks 8 and 9 and at least 80% of study drug as 
specified in the protocol.  
• Not receiving the correct study treatment 
• Failing to meet key (pre-defined) eligibility criteria  
• Other major protocol violations  
 
Determination of whether or not a patient will be excluded from the PP Set will be made prior to the 
database lock. 
6.3. 
Safety Set 
All patients who received at least one dose of study drug will be included in the Safety Set. 
Patients will be considered, for safety analysis, to be in the treatment cohort of the treatment they 
actually received. 
6.4. 
PK Analysis Set 
The PK Analysis Set will be described in a separate PK analysis plan. 
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Statistical Analysis Plan 
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7. 
STATISTICAL ANALYSIS 
For the statistical analyses below, descriptive statistics (n, mean, median, standard deviation 
[SD], 95% confidence interval [CI], minimum, and maximum) will be provided for each 
continuous variable, and frequencies and percentages will be provided for each categorical 
variable. Analyses will be conducted using Statistical Analysis Software (SAS©) version 9.2 or 
higher. Any hypothesis testing described will be 2-sided and performed at the 0.05 level of 
significance; p-values <0.05 will be considered statistically significant. In general, analyses will 
be presented by treatment cohort, and overall where specified. The 3 treatment cohorts are listed 
below: 
  
Cohort # 
Description 
Label in output 
Cohort 1:  
Asfotase alfa 0.5 mg/kg initial single 
dose; followed by multiple dosing starting 
after 2 weeks at 0.5 mg/kg 3 times per 
week  
0.5 mg/kg cohort 
Cohort 2:  
Asfotase alfa 2.0 mg/kg initial single 
dose; followed by multiple dosing starting 
after 2 weeks at 2.0 mg/kg 3 times per 
week  
2.0 mg/kg cohort 
Cohort 3:  
Asfotase alfa 3.0 mg/kg initial single 
dose; followed by multiple dosing starting 
after 2 weeks at 3.0 mg/kg 3 times per 
week  
3.0 mg/kg cohort 
7.1. 
Study Patients 
7.1.1. 
Disposition of Patients 
The number and percent of patients completing the study will be described. For patients who 
discontinued the study, the reason for discontinuation will be summarized. In addition, the 
number of patients who discontinued study drug permanently due to an AE will be summarized. 
Information will be reported using all randomized patients and summary statistics will be 
presented by treatment cohort and overall. 
A listing of patients indicating randomization to treatment, attendance at each visit (home or in-
clinic), discontinuation from the study, and completion of the study will also be generated. 
7.1.2. 
Protocol Deviations 
The number and percent of patients with specific protocol deviations will be summarized using 
all randomized patients.  The following protocol deviations will be checked programmatically 
from the database: 
1. Patients who violated any inclusion/exclusion criteria. 
2. Patients who missed one of the scheduled doses of study drug. 
3. Patients who did not receive the correct study treatment. 
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Statistical Analysis Plan 
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4. Patients who received doses outside the 10% window for expected mg dosage 
administration. 
Protocol deviations from monitoring reports and other relevant sources will also be reviewed, 
and any important deviations will be included in the list that is summarized and reported. 
Summary statistics will be presented by treatment cohort and overall. 
7.1.3. 
Demographics, Disease Characteristics, and History 
All demographic, baseline characteristic, and history information will be summarized using the 
FA Set by treatment cohort and overall. No formal hypothesis testing will be performed to 
compare differences between treatment cohorts. 
Summary statistics will be presented using descriptive statistics (n, mean, SD, 95% CI, median, 
minimum, and maximum) or frequencies and percentages, as appropriate.  
7.1.3.1. 
Demographics 
The following demographic variables will be summarized: 
• Sex 
• Ethnicity 
• Race 
• Japanese descent (yes/no) 
• Age (years) at Enrollment 
• Age (years) at First Injection 
7.1.3.2. 
Disease Characteristics 
The following disease characteristics will be summarized:    
• Age at First Sign/Symptom (years) 
• Age at Diagnosis (years) 
• Time since First Sign/Symptom (see Appendix 9.3) 
• Time since Diagnosis (see Appendix 9.3)  
• TNSALP Gene Mutation 
− Method of Sequencing (whole exome/gene/targeted mutation/targeted next 
generation/panel/other/unknown) 
− Polymorphism present (yes/no) 
− Polymorphism status (homozygous/heterozygous) 
• Documented history (yes/no) of: 
−  serum alkaline phosphatase (ALP) levels below the age-adjusted normal range 
− tissue-nonspecific alkaline phosphatase (TNSALP) gene mutation(s) 
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Statistical Analysis Plan 
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− documented history of PLP above the upper limit of normal at Screening 
All disease characteristics, including the TNSALP gene mutation reported, will be presented by 
treatment cohort and patient identification in data listings.  
7.1.3.3. 
Medical History and Baseline Physical Examination 
The number and percentage of patients with medical history findings will be summarized for the 
FA Set by treatment cohort and overall by The Medical Dictionary for Regulatory Activities 
(MedDRA) System Organ Class (SOC) and Preferred Term (PT). Additionally, HPP-specific 
medical history will be summarized, including a summary of first known HPP symptoms. Lastly, 
the number of permanent teeth lost and number of episodes of pneumonia will be summarized.  
For the physical examination, the number and percentage of patients with abnormal findings at 
Baseline for each body system will be summarized by treatment cohort and overall.  
 
All medical history and baseline physical examination data will be presented in by-patient data 
listings, including the medical history verbatim text describing each history event or first known 
symptom and any abnormal physical examination free text findings. Height at study entry and 
postmenopausal status for females at study entry will also be presented in listings. 
7.1.4. 
Prior and Concomitant Medications / Therapies 
Concomitant medication/therapy data and prior- medication data will be presented in by-patient 
data listings. See Appendix 9.1 for additional details on the definition of prior and concomitant 
medications/therapies and rules for handling missing or incomplete start and stop dates. 
Concomitant medications and therapies will also be summarized in tabular form by anatomic 
class (ATC) level 3 and generic name for the FA Set by treatment cohort and overall using 
frequencies and percentages. The WHO Drug dictionary (DD) version from MAR2015 or later 
will be used to code the medications. 
7.2. 
Efficacy/Pharmacodynamic Analyses                                                           
The analyses and summaries will be based on the FA Set. 
7.2.1. 
Primary Endpoint 
The primary endpoint for this study is the change in PPi from Baseline to pre-3rd dose Week 9. 
Change from Baseline in PPi will be the primary variable. Primary analysis will be performed by 
using a restricted maximum likelihood (REML)-based repeated measures mixed model, fit for 
each treatment cohort to estimate the change at each pre-dose (trough) timepoint starting at Week 
4 (Day 22) through Week 9 (Day 61). The primary hypotheses will test whether the differences 
between the cohorts differ from zero at pre-3rd dose Week 9. The Week 3 (Day 15) pre-dose 
timepoint will not be included in the model assessing change since this is expected to be similar 
to a baseline level of PPi after the first non-dosing period. The analysis will include the fixed, 
categorical effect of visit, adjusted for baseline PPi, gender, baseline weight group (≥ median 
versus < median), and study drug lot assignment. An unstructured covariance structure will be 
used to model the within-patient errors. If this analysis fails to converge, the following structures 
will be tested and the final covariance structure will be determined by Akaike's information 
criterion (AIC): first-order autoregressive, compound symmetry, and Toeplitz. The Kenward-
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Statistical Analysis Plan 
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Roger approximation will be used to estimate denominator degrees of freedom. The estimated 
mean change from Baseline at each visit from the model will be provided, along with 95% CIs 
and p-values.  
A fixed sequence testing procedure will be performed with the comparison of the 3.0 mg/kg 
cohort compared with the 0.5 mg/kg cohort being performed first, and the hypothesis testing for 
the second comparison 2.0 mg/kg cohort compared with the 0.5 mg/kg cohort only being 
performed if the null hypothesis is rejected for the previous comparison at a significance level of 
0.05 (p-value <0.05). The primary endpoint will be met if the null hypothesis is rejected for both 
comparisons at a significance level of 0.05 (both p-values <0.05). 
The same model will additionally be employed with the fixed, categorical effect of visit, adjusted 
for baseline PPi. 
A similar modeling approach will be employed to explore the effect of treatment cohort on the 
change from Baseline in PPi at each pre-dose timepoint. 
As supportive analysis, the non-parametric exact Wilcoxon rank-sum test will be used to assess 
differences between treatment cohorts, using both last observation carried forward (LOCF) and 
observed case (OC) methods. The location shift in the change from Baseline distributions and 
95% CI for the above comparisons will be reported using the Hodges-Lehmann-Sen estimate and 
the exact confidence limits reported. 
To examine the change from Baseline in PPi, descriptive statistics for the absolute PPi level and 
the change from Baseline will be summarized at all study timepoints by treatment cohort, 
spanning from Week 1 to Week 13; Baseline will be calculated in the same way as for the 
primary analysis. Within cohort, the change from Baseline to all study timepoints will be 
analyzed using the non-parametric Wilcoxon signed-rank test.  
 
Individual and mean PPi levels for each cohort versus time curves will be presented with normal 
references ranges indicated (see Appendix 9.3). Please refer to Table 4 on how to handle the 
values fall under the lower limit of quantification (LLOQ). Additional analysis of PPi data may 
be performed if considered useful. 
The above analyses for PPi will additionally be performed using the PP Set.   
7.2.1.1. 
Handling of Dropouts or Missing Data 
The protocol schedule requires 5 pre-treatment baseline PPi samples (-168, -156, -24, -12h, and 
pre-dose Day 1) be collected. The average value will be used for calculating Baseline PPi; 
therefore, at least 1 pretreatment baseline observation is required for the patient to be included 
for the assessment of the primary analysis. Patients will also be required to have at least 1 on-
treatment PPi observation to be included in the FA Set. For the analyses of changes from 
Baseline using repeated measures mixed modeling, missing values will not be imputed based on 
a Missing at Random Assumption (MAR). Missing values at the pre-3rd dose Week 9 
assessment will be imputed with the last available on-treatment pre-dose trough assessment prior 
to pre-3rd dose Week 9 using LOCF. This imputation will occur where indicated.  
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Statistical Analysis Plan 
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7.2.1.2. 
Subgroup Analysis 
The randomization for this study is planned to be stratified by gender; therefore, all descriptive 
analyses discussed in Section 7.2.1 will additionally be performed stratified by gender.  
7.2.1.3. 
Multicenter Studies 
Up to 4 centers are expected for this study and the number of patients at each center by cohort is 
not expected to be large enough to produce meaningful summaries by center; therefore analyses 
by center will not be performed. 
7.2.1.4. 
Hypothesis Testing and Significance Level 
A two-sided Type I error rate of 0.05 will be used to define statistical significance. The primary 
endpoint will be met if the null hypothesis is rejected for both comparisons described in Section 
7.2.1 at a significance level of 0.05, i.e. both p-values <0.05. For the primary endpoint, a fixed 
sequence testing procedure will be used to control the Type I error rate. Statistical adjustment of 
p-values will not be performed. 
7.2.1.5. 
Sensitivity Analyses 
The change in PPi from Baseline to pre-3rd dose Week 9 will also be analyzed using analysis of 
covariance (ANCOVA), with treatment as fixed factor, baseline PPi, gender, baseline weight 
group (≥ median versus < median), and study drug lot assignment as covariates, and using both 
LOCF and OC methods in the FA Set. 
The tests will compare 2.0 mg/kg cohort to 0.5 mg/kg cohort, and 3.0 mg/kg cohort to 0.5 mg/kg 
cohort. Ninety-five percent CIs will be presented together with the estimated p-values.  
In addition, sensitivity analyses will be performed if any medications are administered to the 
patient that might impact the results used in the primary analysis of PPi. 
Sensitivity analyses may be employed that include only the patients that receive 100% of the 
study drug doses through Week 9, as specified in the protocol. 
Finally, sensitivity analyses may be employed to exclude biologically implausible outliers in PPi 
and PLP. 
7.2.2. 
Secondary Endpoint 
For the secondary endpoint, PLP change from Baseline to pre-3rd dose Week 9, similar methods 
as for PPi will be employed in the FA Set and PP Set.  
 
Sensitivity analyses for PLP may be employed for any patients without taking any vitamin B6 or 
with consistent input of vitamin B6, defined as taking same dose of vitamin B6 during the study. 
Vitamin B6 usage will be obtained from the concomitant medications.  
 
Additionally for sensitivity, the within-patient mean absolute levels of the pre-treatment 
“fasting” PLP samples (-168 h, -24 h, pre-dose Day 1) and the “non-fasting” PLP samples (-156 
h, -12 h) will be compared using the exact Wilcoxon rank-sum test for all patients in the FA Set. 
If a statistical difference is detected between the pre-treatment “fasting” and “non-fasting” 
samples, given samples on treatment are collected under both “fasting” and “non-fasting” 
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Statistical Analysis Plan 
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conditions, the change to each post-treatment timepoint will be evaluated descriptively using the 
matched “fasting” or “non-fasting” average at Baseline; accordingly, “fasting” post-treatment 
samples will use a “fasting” Baseline and “non-fasting” post-treatment samples will use a “non-
fasting” Baseline.   
Please refer to Table 4 on how to handle the values fall under the lower limit of quantification 
(LLOQ). 
7.2.3. 
Tertiary Analyses 
Not Applicable. 
7.2.4. 
Other Efficacy Analyses 
Not Applicable. 
7.2.5. 
Pharmacokinetic and Pharmacodynamic Analyses 
Pharamcokinetic analyses and analyses relating PK and PD will be described in a separate 
analysis plan.  
7.3. 
Safety Analyses 
All safety analyses will be conducted on the Safety Set based on the treatment actually received. 
All safety data will be summarized in tabular format by treatment cohort and overall, and all data 
will be in by-patient data listings. See Appendix 9.3 for the definition of Treatment Baseline for 
Safety analyses. No formal hypothesis testing is planned. Missing or invalid safety data will not 
be replaced. 
7.3.1. 
Study Duration, Treatment Compliance, and Exposure 
Study duration, treatment compliance, and exposure will be summarized for the Safety Set by 
treatment cohort, according to the treatment actually received.   
Study duration is defined as the time from first dose to the end of the main study period (ie, 
Week 13: Day 87) or study discontinuation date, whichever occurs first. The period after Day 87 
up to the Safety Follow-up call at 90 days after last dose will not be included in the calculation.    
Study treatment compliance will be defined as the percentage of reported injections taken out of 
the total number of expected reported injections from the dosing diaries up to the point of study 
completion or discontinuation. If a patient discontinues prematurely from the study, his or her 
compliance will be based on the period up to the point of discontinuation from the study. A 
separate study treatment compliance analysis will be conducted counting only reported injections 
where the milligram administered complies within a 10% window of the expected dose based on 
the weight linked to the dosing event.  
Study drug administration data will be presented by treatment cohort in a listing. The date/time 
of first injection, end time of last injection (if multiple), injection location(s), total volume 
administered (mL), and number of injections will be included. In addition, tabular summaries 
will be produced by treatment cohort for the average daily dose (mg/kg) including all expected 
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dosing events on study and average weekly dose (mg/kg/week) during the multiple Dosing 
Period, derived from the volume administered and weight linked to each dosing event.  
7.3.2. 
Adverse Events (AEs) 
Adverse events will be coded in MedDRA and presented by SOC and PT. Adverse events 
occurring on or after first treatment, treatment-emergent AEs (TEAEs), will be tabulated and 
presented by treatment cohort and overall. Summaries for pre-treatment AEs (PTAEs) will be 
included only where appropriate and specified. See Appendix 9.3 of the SAP for further details 
on the difference between TEAEs and PTAEs. Study displays to be included are described 
below.  
7.3.2.1. 
Overall Summary of Adverse Events 
An overall summary of the following categories of AEs will be presented by treatment cohort 
and overall, including summaries of events (n) and number of patients with events (n, %): 
TEAEs, treatment-emergent SAEs, and treatment-emergent non-SAEs. Within each category, the 
following subcategories will also be summarized:  
• Mild/Moderate/Severe TEAEs 
• Related TEAEs (possibly, probably, definitely related, or missing relationship) 
• TEAEs leading to withdrawal from the study   
• TEAEs leading to death  
• AESI, see Section 7.3.2.7 
 
A summary of events (n) and number of patients with events (n, %) for PTAEs will also be 
included with the following subcategories: Mild/Moderate/Severe AEs, AEs leading to 
withdrawal, and AEs leading to death (note that Related AEs and AESI do not apply to PTAEs). 
A listing of all TEAEs by treatment cohort and patient will be presented. Separate listings will be 
produced for treatment-emergent SAEs, AEs leading to study drug withdrawal, AEs resulting in 
death, and PTAEs.   
7.3.2.2. 
AEs by SOC and PT 
The number of TEAEs and the number and percentage of patients with events will be presented 
by SOC and PT. Patients are counted once in each SOC and PT. Percentages will be based on the 
total number of treated patients in the treatment cohort. Treatment-emergent SAEs, treatment-
emergent non-SAEs, and PTAEs will be summarized using the same approach. 
7.3.2.3. 
AEs by PT 
The number of TEAEs and the number and percentage of patients with events will be presented 
by PT. Patients are counted once in each PT. Percentages will be based on the total number of 
treated patients in the treatment cohort.   
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Statistical Analysis Plan 
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7.3.2.4. 
AEs and SAEs by SOC, PT, and Relationship 
The number and percentage of patients with events will be presented by SOC and PT by grouped 
relationship (related, not related). If a patient has more than one occurrence of an AE, the 
strongest relationship to study treatment will be used in the summary table.   
In addition, the number of AEs and the number and percentage of patients with AEs will be 
summarized by SOC and PT, and relationship result: not related, unlikely related, possibly 
related, probably related, or definitely related.    
Lastly, the number of Related TEAEs and the number and percentage of patients with Related 
TEAEs will be summarized by SOC and PT, and separately by PT.  The same analysis will be 
produced for Related treatment-emergent SAEs.   
7.3.2.5. 
AEs by SOC, PT, and Severity 
The number and percentage of patients with events will be presented by SOC and PT by severity 
(mild, moderate, severe). If a patient has more than one occurrence of an AE, the most severe 
occurrence will be used in the summary table.   
7.3.2.6. 
Deaths 
The AEs resulting in death will be presented in a listing. 
7.3.2.7. 
Adverse Events of Special Interest 
7.3.2.7.1. Hypersensitivity (IARs) and Injection Site Reactions (ISRs) 
The number of Hypersensitivity (IARs) and number and percentage of patients with 
Hypersensitivity (IARs) will be presented by treatment cohort and overall by SOC and PT; the 
same analysis will be repeated separately for ISRs.  Separate listings of Hypersensitivity (IARs) 
and ISRs will be produced. 
7.3.2.7.2. Adverse Events of Special Interest: Ectopic Calcification 
All observed MedDRA PTs identified in the Alexion clinical review to be ectopic calcification 
AESIs will be presented alphabetically in a data listing. 
The number of ectopic calcification AESIs, TEAEs within this AESI category, and the number 
and percentage of patients with events will be presented by treatment cohort and overall by SOC 
and PT. 
7.3.2.7.3. Adverse Events of Special Interest: Lipodystrophy 
Events of lipodystrophy will be analyzed using the same approach described above for events of 
ectopic calcification. 
7.3.2.7.4. Adverse Events of Special Interest: Craniosynostosis 
Events of craniosynostosis will be analyzed using the same approach described above for events 
of ectopic calcification. 
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Statistical Analysis Plan 
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7.3.2.7.5. Adverse Events of Special Interest: Chronic Hepatitis 
Events of chronic hepatitis will be analyzed using the same approach described above for events 
of ectopic calcification. 
 
7.3.3. 
Other Safety 
7.3.3.1. 
Analyses for Laboratory Tests 
Actual values and changes from treatment baseline will be summarized descriptively for patients 
with available data for each laboratory parameter by treatment cohort and overall. Missing 
laboratory data will not be imputed and only scheduled assessments will be summarized in table 
summaries; any unscheduled assessments will be included in by-patient data listings and will be 
flagged as such. A summary for “Last Assessment” will be included for the last available post-
treatment baseline result for each patient. See Appendix 9.3 for the definition of Treatment 
Baseline for Safety analyses, and refer to Table 4 on how to handle the PTH values fall under the 
LLOQ. 
All laboratory values will be classified as normal, below normal (low), or above normal (high) 
based on normal ranges supplied by the central laboratory and shift tables will be produced 
showing the shift from treatment baseline to post-treatment baseline assessments. Frequencies of 
abnormal values will be presented in tabular form. A summary of shifts to Last Assessment will 
also be included. 
For selected laboratory assessments, for example, ALP, figures over time may be produced. For 
purposes of analyses, laboratory results based upon standardized units will be used.  
A listing of all laboratory data will be presented by treatment cohort, patient identification, visit, 
and laboratory parameter.   
7.3.3.2. 
Vital Signs 
Actual values and changes from treatment baseline in vital signs (blood pressure, heart rate, 
respiratory rate, temperature) at each visit will be summarized descriptively for patients with 
available data by treatment cohort and overall. Missing vital signs data will not be imputed and 
only scheduled assessments will be summarized in tables; unscheduled assessments will be 
presented in by-patient data listings and flagged as such. A summary for “Last Assessment” will 
be included for the last available post-treatment baseline result for each patient. 
A listing of all vital signs data will be presented by treatment cohort, patient identification, and 
visit with each vital sign result for the visit listed in the same row. A separate listing of patient 
weight data at each visit will also be presented with unit standardized to kg. 
7.3.3.3. 
Physical Examination 
Physical examination findings will be summarized descriptively by treatment cohort and overall for 
each timepoint using counts and percentages. A summary for “Last Assessment” will be included 
for the last available post-treatment baseline result for each patient. A listing of all physical 
examination data will be presented by treatment cohort, patient identification, visit, and body 
system. 
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7.3.3.4. 
Renal Ultrasound 
The following renal ultrasound findings will be summarized by treatment cohort and overall for 
each timepoint using counts and percentages: 
-Nephrocalcinosis (yes/no) 
-Normal/Abnormal Not Clinically Significant not related to underlying condition/Abnormal Not 
Clinically Significant related to underlying condition/Abnormal Clinically Significant 
Listings of all renal ultrasound results will be provided by treatment cohort, patient 
identification, and visit, including any free text response for ‘Findings’. 
7.3.3.5. 
Ophthalmology Assessment 
The following ophthalmology examination findings will be summarized by treatment cohort and 
overall for each timepoint and eye (left and right), using counts and percentages:   
Normal/Abnormal Not Clinically Significant not related to underlying condition/Abnormal Not 
Clinically Significant related to underlying condition/Abnormal Clinically Significant for the 
following: 
• Adnexa, Eye Movements, Intraocular Pressure 
• Visual Acuity   
• Slit-lamp Biomicroscopy categories: Anterior Chamber, Lens, Conjunctiva, Cornea, 
Fundus, Other 
Is Visual Acuity impacted by any abnormality observed’ (yes/no) 
Listings of all ophthalmology assessments will be provided by treatment cohort, patient 
identification, and visit, including any free text response for ‘Findings’ where calcifications 
should be noted. 
7.3.3.6. 
Pregnancy 
Pregnancy data will be provided in a listing by treatment cohort and patient identification. 
7.3.3.7. 
Anti-Drug Antibodies and Neutralizing Antibodies   
 
The following frequency counts and/or percentages will be provided for ADA: 
• Frequency counts of patients who were missing all ADA values at Baseline, had ADA 
values at Baseline, missing all ADA values post-baseline, had ADA values post-baseline, 
or had ADA values present both at Baseline and post-baseline. 
• Frequency counts and percentages of patients who were “ADA Negative” or “ADA 
Positive” at Baseline. The denominator will be the number of patients who had ADA 
values reported at Baseline. 
• Frequency counts and percentages of patients who were: 
• “Always ADA Negative” 
• “Ever ADA Positive”  
• “ADA Positive Continuously”  
• “ADA High Titer Category (>128)”   
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Statistical Analysis Plan 
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The denominator will be the number of patients who had ADA values reported post-
baseline.  
• Frequency counts and percentages of patients who were “ADA Negative” or “ADA 
Positive” at Baseline (in patients who had ADA values reported at both Baseline and 
post-baseline). The denominator will be the number of patients who had ADA values 
reported both at Baseline and post-baseline. 
• Frequency counts and percentages of patients that had ADA values reported who were: 
• “Always ADA Negative”  
• “Ever ADA Positive”  
• “ADA Positive Continuously” 
• “ADA High Titer Category (>128)”   
The denominator will be the number of patients who had ADA values reported at both 
Baseline and post-baseline.  
• Frequency counts and percentages for shifts in ADA status from: 
• “ADA Negative”  to “Always ADA Negative”  
• “ADA Negative”  to  “Ever ADA Positive”  
• “ADA Positive” to “Always ADA Negative”  
• “ADA Positive” to “Ever ADA Positive”  
• “ADA Negative”  to “ADA Positive Continuously” 
• “ADA Positive” to “ADA High Titer Category (>128)” 
The denominator will be the number of patients who had ADA Status reported at both 
Baseline and post-baseline.  
 
The following frequency counts and/or percentages will be provided for NAb: 
  
• Frequency counts of patients who were “ADA Positive” at baseline or “Ever ADA 
Positive” at post-baseline. This summary will identify the population of patients for 
relevant assessment of NAb. 
• Frequency counts of patients who were missing all NAb values at Baseline, or had 
NAb values at Baseline, and patients who were “ADA Positive” at baseline. 
• Frequency counts and percentages for “NAb Negative” and “NAb Positive” at 
Baseline in patients who were “ADA Positive” at Baseline. The denominator will 
be the number of patients who had NAb values at Baseline and were “ADA 
Positive” at Baseline. 
• Frequency counts of patients who were missing all NAb values at post-baseline, 
or had NAb values at post-baseline, and patients who were “Ever ADA Positive” 
post-baseline. 
• Frequency counts and percentages for “Always NAb Negative” and “Ever NAb 
Positive” post-baseline in patients who were “Ever ADA Positive” post-baseline.    
The denominator will be the number of patients who had NAb values post-
baseline and were “Ever ADA Positive” post-baseline. 
 
The number and percentage of patients that do and do not develop ADA to asfotase alfa at each 
time point will also be presented. Additionally, descriptive statistics for ADA titers at each time 
point will be presented, including counts and percentages for each titer, and median, minimum, 
and peak titer.  For those patients that are ADA positive, the number and percentage of patients 
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Statistical Analysis Plan 
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28 Jun 2017, Version 2.0 Final 
with NAb positive and negative status will be presented along with continuous descriptive 
statistics for the NAb % inhibition for NAb positive patients.  
The peak ADA titer and last ADA titer will be summarized with descriptive statistics, as well as 
the peak NAb and last NAb % inhibition in the patients that are both ADA and NAb positive 
overall. The peak and last NAb % inhibition will be evaluated only in results that have both 
ADA and NAb positive status.  
The following will be summarized descriptively: the time to first post-baseline ADA positive, the 
time to first post-baseline ADA positive continuously, the time to first ADA peak titer, the time 
to first ADA high titer category (>128), the time to first NAb positive, and the time to first NAb 
peak % inhibition. Finally, graphical displays will be presented showing titer levels over time, 
with an overlay of PPi and (separately) PLP levels over time. Listings of all antibody data will be 
produced by treatment cohort, patient identification, and visit. 
 
Graphical displays will be presented as appropriate. 
 
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
8. 
REFERENCES 
 
1. Charles River Final Report, Charles River Laboratories Preclinical Services, Test Facility 
Study No. 315304, Quantitative Determination of Pyrophosphate (PPi) Concentration in 
Normal Human Plasma Samples Using a PPi Assay (Normal Reference Range). Report Date: 
18 September 2013.            
 
2. Biotrial Analytical Report, Biotrial Bioanalytical Services Inc. study number: 
P11137_CZR, Determination of Pyridoxal-5-phosphate in Human Plasma by LC/MS/MS. 
Report Date: 09-OCT-2013. 
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
9. 
APPENDICES 
9.1. 
Protocol Schedules of Events 
Table 2: Protocol Schedule of events 
 
 
 
Assessment 
 
 
 
Screeni
ng 
 
 
Run-in 
Period 
 
Main Study Period 
Safety 
F/U 
CallP1 
Single 
Dose 
No 
Dosin
g 
 
Weekly Dosing (3x/week) 
 
No Dosing 
 
Study 
DayP2,3 
Study 
WeekP2,3 
W -12 
to 
W -2 
D -7 to 
D -1 
(W -1) 
D1-
D7  
(W1) 
D8-
D14  
(W2) 
D15-D
35 
(W3-
W5) 
D36-
D42 
(W6) 
D43-
D56 
(W7-
W8) 
D57-
D63 
(W9) 
D64-D8
0 
(W10-
W12)  
D81-
D87 
(W13
) 
EOS+
3m 
Informed 
ConsentP4 
X 
 
 
 
 
 
 
 
 
 
 
Inclusion/ 
Exclusion 
Criteria  
X 
 
 
 
 
 
 
 
 
 
 
Demograph
icsP5 
X 
 
 
 
 
 
 
 
 
 
 
Medical 
historyP6 
X 
 
 
 
 
 
 
 
 
 
 
HPP gene 
mutation 
analysisP7 
 
X 
 
 
 
 
 
 
 
 
 
Concomita
nt 
medicationsP
8 
X 
X 
X 
X 
X 
X 
X 
X 
X 
X 
 
Concomita
nt 
therapiesP8 
X 
X 
X 
X 
X 
X 
X 
X 
X 
X 
 
Physical 
examinatio
nsP9 
X 
X 
X 
 
 
 
 
X 
 
X 
 
Vital 
signsP10 
X 
X 
X 
X 
X 
 
X 
X 
X 
X 
 
Body 
WeightP9 
X 
X 
X 
X 
X 
X 
X 
X 
X 
X 
 
Randomizat
ion 
 
X 
 
 
 
 
 
 
 
 
 
In-ClinicP11 
X 
X 
X 
 
 
 
 
X 
 
X 
 
Study drug 
administrati
on-Single 
DoseP12,13 
 
 
X 
 
 
 
 
 
 
 
 
Study drug 
administrati
on-3x 
Weekly 
DosingP12,13 
 
 
 
 
X 
X 
X 
X 
 
 
 
Chemistry, 
hematology
, 
urinalysisP14 
X 
 
X 
 
 
 
 
X 
 
X 
 
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
 
 
 
Assessment 
 
 
 
Screeni
ng 
 
 
Run-in 
Period 
 
Main Study Period 
Safety 
F/U 
CallP1 
Single 
Dose 
No 
Dosin
g 
 
Weekly Dosing (3x/week) 
 
No Dosing 
 
Study 
DayP2,3 
Study 
WeekP2,3 
W -12 
to 
W -2 
D -7 to 
D -1 
(W -1) 
D1-
D7  
(W1) 
D8-
D14  
(W2) 
D15-D
35 
(W3-
W5) 
D36-
D42 
(W6) 
D43-
D56 
(W7-
W8) 
D57-
D63 
(W9) 
D64-D8
0 
(W10-
W12)  
D81-
D87 
(W13
) 
EOS+
3m 
Lab Tests 
(vitamin D, 
serum PTH, 
urine 
Ca:creatini
ne)P14 
X 
 
X 
 
 
 
 
X 
 
X 
 
Pregnancy 
Test 
X 
X 
X 
 
 
 
 
X 
 
X 
 
Renal 
ultrasound 
 
X 
 
 
 
 
 
 
 
X 
 
Eye examP15 
 
X 
 
 
 
 
 
 
 
X 
 
Pharmaco-
dynamics 
(PPi and 
PLP)P16,17 
X 
X 
X 
X 
X 
 
X 
X 
X 
X 
 
Anti-drug 
antibodiesP16
,17 
 
 
X 
X 
X 
 
X 
X 
X 
X 
 
Pharmacoki
neticsP16,17 
 
 
X 
X 
X 
 
X 
X 
X 
X 
 
Adverse 
eventsP18 
 
X – Continuous Monitoring 
Abbreviations: EOS = end-of-study; F/U = follow-up; AE = adverse event; HR = heart rate; IAR = injection-associated reaction; 
PK = pharmacokinetics; PLP = pyridoxal 5′-phosphate; PPi = inorganic pyrophosphate; PTH = parathyroid hormone; m = month; 
W = Week; d = day.  
23TUNOTE: Patients may be asked to provide additional blood samples at an unscheduled visit at the request of the Sponsor or 
Investigator as part of a safety evaluation or for adjustment of the drug dose. 
P1 
PThe Safety Follow-Up Call will occur 3 months after the last dose of study drug. Males and Females of child-bearing potential 
will be followed up for birth control and pregnancy information. Any reported pregnancies in female patients or female 
partners of male patients will be followed until the outcome of the pregnancy is known. Refer to Section 13T9.4.1.1013T for further 
details. 
P2
P 
The Week 1, Day 1 single dose must be administered on a Monday, and the multiple dosing must be administered on 
Mondays, Wednesdays, and Fridays during the weeks indicated.  
P3
P 
To facilitate scheduling of required study assessments at each visit, the study visit may be shortened or prolonged, as 
necessary, as long as the specified order of assessments and/or availability of results pertaining to laboratory work (including 
PK and pregnancy and asfotase alfa anti-drug antibody testing) and vital signs are adhered to.  
P4 
PIf the time period between the initial Screening and the re-Screening is >12 weeks, all Screening procedures must be repeated. 
P5
P 
Demographics will be collected as permitted by region and may include Date and region of birth, age, sex, ethnicity, race, and 
whether the patient is of Japanese descent. 
P6
P 
Medical history includes general medical history and HPP-specific medical history from historical medical records (eg, X-
rays, videos, hospitalization records). Details of loss of adult teeth will be included as part of medical history. 
P7 
PHPP gene mutation analysis will be performed at Baseline if results (from within 49 days of Baseline) are not available in the 
medical records. 
P8
P 
Concomitant medications and therapies must be collected from 30 days prior to study entry up until the final study visit. All 
available historical use of certain medications (ie, related to HPP, growth, etc.) will be captured. 
P9
P 
Physical examination will include assessment of general appearance; skin; head, ear, eye, nose, and throat; neck; lymph nodes; 
chest; heart; abdominal cavity; limbs; central nervous system; musculoskeletal. At Screening and Baseline visits, a complete 
physical examination will be performed. Thereafter, limited physical examinations (based on the patient’s signs/symptoms) 
may be performed. All physical examinations (complete and limited) will include weight (using a calibrated scale) and 
examination of asfotase alfa injection sites for potential reaction(s). The Screening and Baseline physical examination will 
include height (using a wall-mounted standiometer).  
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
P10
P 
Vital signs include blood pressure, heart rate, respiratory rate, and temperature. On dosing days in the clinic or under medical 
supervision at home, vital signs will be taken within 10 minutes before study drug injection.  
P11 
PIn-clinic or inpatient study visits will occur during Screening, the Run-In Period (Week -1), Week 1, Week 9, and Week 13. 
P12
P 
Urine and serum pregnancy testing is required for women of childbearing potential only. Results of urine pregnancy testing 
must be negative prior to IP administration (when applicable). 
P13
P 
Study drug will be administered in the clinic for the first dose and all other doses that occur during study visits. All other study 
drug administration will occur at home under the supervision of home healthcare.  
P14
P 
All patients are required to fast for 8 hours prior to laboratory testing (water all ad libitum). All urine and blood samples for 
laboratory assessments must be collected prior to study drug administration. Single exception is blood sample collection for 
analysis of PK parameters at required post-dose timepoints. For all patients, fasting samples should be collected at the 
beginning of the visit day, before any other study-related procedures are performed. 
P15
P 
A full ophthalmology examination will be performed at scheduled visits. The examination will assess for papilledema and 
signs of ectopic calcification, and will include assessments of visual acuity; adnexa; and slit-lamp biomicroscopy with 
examination of anterior chamber, lens, conjunctiva, cornea, and fundus. The ophthalmology examination should be performed 
by a qualified ophthalmologist. Sites will be provided ophthalmologic worksheets required to complete the full exam. 
Ophthalmology exams may be performed by a qualified optometrist (i.e., Doctor of Optometry, O.D.) as long as the 
optometrist works under the supervision of an ophthalmologist. 
P16
P 
Asfotase alfa anti-drug antibody testing and PK/PD analyses must be performed on samples obtained at the same time (ie, pre-
dose samples from the same study visit). 
P17
P 
Refer to 13TTable 313T for timing of PK/PD and asfotase alfa anti-drug antibody assessments. 
P18
P 
For acute or severe IARs (eg, with signs/symptoms of hypersensitivity, irrespective of the time from administration of study 
drug to onset), additional blood and urine samples must be collected to assess the reaction. Refer to Section 13T9.513T for details of 
sample collection. 
 
Table 3: Protocol schedule of events for Pharmacokinetic, Pharmacodynamic, and 
Immunogenicity Assessments 
 
 
Week 
 
Sampling Times  
 
DosingP2 
PK, PPi 
and PLP 
 
ADA 
Run-in 
Period 
Week -1 
(establish 
baseline) 
Day -7: -168h, -156h pre-dose 
Day -1: -24h, -12h pre-dose 
NA 
PPi and 
PLP only 
NA 
Single 
Dose  
Week 1 
Day 1: pre-dose; post-dose 6h, 12h  
D1 (single-
dose) 
All 
Day 1: pre-dose  
No Dosing 
Week 1 
Day 2: post-D1 dose 24h, 32h, 36h 
Day 3: post-D1 dose 48h, 56h, 60h 
Day 4: post-D1 dose 72h 
Day 5: post-D1 dose 96h 
Day 6: post-D1 dose 120h 
Day 7: post-D1 dose 144h 
None 
All 
 
No Dosing 
Week 2 
Day 8: post-D1 dose 168h 
Day 11: post-D1 dose 240h 
None 
All 
Day 8: post-D1 dose 
168h 
 
Weekly 
Dosing 
(3 times 
per week) 
Week 3 
Day 15: pre-dose, post-dose 6h 
D15, D17, 
D19 
All 
Day 15: pre-dose 
Week 4 
Day 22: pre-dose, post-dose 6h  
D22, D24, 
D26 
All 
Day 22: pre-dose   
Week 5 
Day 29: pre-dose (trough), post-
dose 6h 
D29, D31, 
D33 
All 
Day 29: pre-dose   
Week 6 
None 
D36, D38, 
D40 
None 
None 
Week 7  
Day 43: pre-dose (trough), post-
dose 6h 
D43, D45, 
D47 
All 
Day 43: pre-dose 
Week 8 
Day 50: pre-dose (trough), post-
dose 6h 
D50, D52, 
D54 
All 
Day 50: pre-dose 
Week 9 
Day 57: pre-dose 
D57, D59, 
All 
Day 61: pre-dose 
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
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28 Jun 2017, Version 2.0 Final 
 
 
Week 
 
Sampling Times  
 
DosingP2 
PK, PPi 
and PLP 
 
ADA 
Day 61: pre-dose (trough), post-
dose 6h, 12h, 24h, 32h, 36h, 48h, 
56h, 60h 
D61 
No Dosing 
Week 10 
Day 64: post-D61 dose 72h 
Day 65: post-D61 dose 96h 
Day 66: post-D61 dose 120h 
Day 67: post-D61 dose 144h 
Day 68: post-D61 dose 168h 
None 
All 
Day 68: post-D61 
dose 168h 
Week 11 
Day 71: post-D61 dose 240h 
Day 75: post-D61 dose 336h 
None 
All 
Day 75: post-D61 
dose 336h 
Week 12 
Day 80: post-D61 dose 456h  
None 
All 
Day 80: post-D61 
dose 456h  
Week 13 
Day 87: post-D61 dose 624h 
None 
All 
Day 87: post-D61 
dose 624h 
Abbreviations: ADA = anti-drug antibodies; PK = pharmacokinetics; PLP = pyridoxal 5′-phosphate; PPi = inorganic 
pyrophosphate; SOM = Study Operations Manual; D = day; h = hour, NA=not applicable. 
NOTE: Trough is defined as pre-dose concentration (ie, concentration data-point collected just prior to the next dose).  
NOTE: Baseline definitions:  
• For PD assessments, there are 5 pre-treatment baseline samples (-168, -156, -24, -12, and pre-dose Day 1) to be collected. The 
average value will be used for Baseline. 
• For PK and immunogenicity assessments, Baseline is Day 1 pre-dose sample.  
1 Timepoints for pre-dose PK sample collection have a window of -15 minutes and for post-dose PK sample collection have a 
window of ±15 minutes. For additional instructions, please refer to the SOM.  
2 The Week 1, Day 1 single dose must be administered on a Monday, and the multiple dosing in Week 3 through Week 9 must 
be administered on Mondays, Wednesdays, and Fridays.  
 
9.2. 
Sample Size, Power, and Randomization 
A sample size of 9 patients per cohort (27 patients total) will provide sufficient power (>80%) to 
detect a difference of 2.3 μM between the 9.0 mg/kg/week cohort compared to the 1.5 
mg/kg/week cohort, and between the 6.0 mg/kg/week cohort compared to the 1.5 mg/kg/week 
cohort in the change from Baseline to pre-3PrdP dose in Week 9 PPi (assuming a SD of 1.5 μM). 
This is based upon the use of a 2-sided, 2-sample t-test analyzed using a fixed sequence testing 
procedure with the comparison of the 9.0 mg/kg/week cohort compared to the 1.5 mg/kg/week 
cohort being performed first, and the hypothesis testing for the second comparison 6.0 
mg/kg/week cohort compared to the 1.5 mg/kg/week cohort only being performed if the null 
hypothesis is rejected for the previous comparison at a significance level of 0.05.  
A sample size of 6 patients per cohort (18 patients total) will provide sufficient power (>90%) to 
detect a difference of 3.2 μM (SD 1.5 μM) using the same assumptions and fixed sequence 
testing procedure. A difference of 3.2 μM (SD 1.5 μM) was observed in adult pediatric-onset 
treated patients versus controls in Study ENB-009-10 for the change from baseline to Week 6 in 
PPi. Between 6 and 9 patients per cohort (18 and 27 patients total) will give sufficient power to 
detect a mean difference of 2.3 to 3.2 μM (SD 1.5 μM). 
27 patients who meet eligibility criteria for study participation will be randomized to 1 of the 
following 3 cohorts:  
1. 0.5 mg/kg initial single dose; multiple dosing starting after 2 weeks at 0.5 mg/kg 3 times per 
week  
2. 2.0 mg/kg initial single dose; multiple dosing starting after 2 weeks at 2.0 mg/kg 3 times per 
week  
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
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28 Jun 2017, Version 2.0 Final 
3. 3.0 mg/kg initial single dose; multiple dosing starting after 2 weeks at 3.0 mg/kg 3 times per 
week  
Randomization will be stratified by gender to ensure a similar distribution of gender in each 
cohort. An IXRS central randomization scheme will be employed. 
9.3. 
Technical Specifications for Derived Variables 
The following derived data will be calculated prior to analysis.  
Age 
Age will be presented as the number of years between date of birth and the reference date. The 
following ages may be computed, with reference dates indicated: 
Age and reference date 
AGE  
REFERENCE DATE 
• 
Age at Diagnosis 
• 
Date of Diagnosis 
• 
Age at First Known Sign/Symptom 
• 
Date of Onset of First Known Sign/Symptom 
• 
Age at Enrollment  
• 
Date of Signing ICF 
• 
Age at First Injection 
• 
Date of First Injection 
 
In cases where only the month and year are provided for a date, the day for the date will be 
imputed as 15. Missing month will be imputed as June. In cases where the day is observed but 
the month is missing, the date will be imputed as June 15. In instances when the imputed 
reference date is earlier than the birth date, the birth date will be used as the reference date. 
Time Since Reference date 
TIME  
REFERENCE DATE 
• 
Time Since First Known 
Sign/Symptom 
• 
Date of Onset of First Known Sign/Symptom 
• 
Time Since Diagnosis 
• 
Date of Diagnosis 
Time Since First Known Sign/Symptom and Time Since Diagnosis are based on first dose date, 
will each be dichotomized into the following categories: < 10 years and ≥ 10 years. 
Definition of Treatment Baseline: 
• For PPi and PLP assessments, there are 5 pre-treatment baseline samples (-168, -156, -24, -12h, 
and pre-dose Day 1) to be collected. The average value will be used for Baseline.  
• For antibody, and laboratory assessments, Treatment Baseline is the Day 1 pre-dose sample.  
• For Safety assessments (including weight), the last assessment prior to first dose will be used 
for Treatment Baseline.  
Adverse Events 
Additional details for the analysis of Adverse Events described in Section 7.3.2: 
Treatment-emergent AEs (TEAEs) are events with start dates and start times on or after the date 
and time of the first study drug dose. If the start date of an AE is partially or completely missing 
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Alexion Pharmaceuticals 
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28 Jun 2017, Version 2.0 Final 
and the end (stop) date and time of the AE does not indicate that it occurred prior to first dose, 
then the determination of treatment-emergent status will be based on the following: 
If the start year is after the year of the first study drug dose, then the AE is treatment-emergent; 
else, 
If the start year is the same as the year of the first study drug dose and the start month is missing, 
then the AE is treatment emergent; else if the start month is present and is the same or after the 
month of the first study drug dose, then the AE is treatment-emergent; else, if the start date is 
completely missing, then the AE is treatment-emergent.  
Pre-Treatment Adverse Events (PTAEs) are the AEs occur after the time of informed consent up 
through the Run-In Period and prior to the 1st dose.  
Patient percentages are based on the total number of treated patients in the particular treatment 
cohort. 
Related AEs are defined as possible, probable or definitely related, or events with missing 
relationship status. Unrelated AEs are defined as unlikely or not related. 
Medications and Therapies: 
Concomitant medications/therapies are any events with administration dates and times on or after 
the date and time of the first study drug dose. If the start date of a medication or therapy is 
partially or completely missing and the end (stop) date and time of the medication/therapy does 
not indicate that it occurred prior to first dose, then the determination of concomitant status will 
be based on the following: 
If the start year is after the year of the first study drug dose, then the medication/therapy is 
concomitant; else, 
If the start year is the same as the year of the first study drug dose and the start month is missing, 
then the medication/therapy is concomitant; else if the start month is present and is the same or 
after the month of the first study drug dose, then the medication/therapy is concomitant; else, if 
the start date is completely missing, then the medication/therapy is concomitant.  
All other medications/therapies are considered prior medications/therapies  and could occur from 
the 30 days prior to informed consent up through the Run-In Period and prior to the 1st dose.  
Normal Reference ranges for PPi and PLP: 
PPi (µM):  
Male/Female   
13-18 years 0.75-4.78 
>18 years 1-5.82 
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Alexion Pharmaceuticals 
Statistical Analysis Plan 
Protocol Version 1.0: 16 Nov 2015  
28 Jun 2017, Version 2.0 Final 
 
PLP (ng/mL):  
Male/Female  
6-18 years 5.74-61.15 
>18 years 2.81-26.70 
 
For observations that fall under the lower limit of quantification (LLOQ), the following values 
will be used: 
Table 4: Values Used for Observations under the Lower Limit of Quantification (LLOQ) 
Parameter 
Value Used 
Plasma PPi 
0.75µM 
Plasma PLP 
2.5ng/mL 
Serum PTH 
.5 x LLOQ 
 
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