Conditions: Alopecia Areata
Keywords: T-cell-mediated autoimmune skin disorder Alopecia areata Alopecia APD334 Etrasimod Hair loss
Allocation: RANDOMIZED | Intervention model: PARALLEL
Enrollment: 80
Healthy volunteers: no

Brief summary:
The purpose of this study is to evaluate the safety and efficacy of etrasimod monotherapy (2 milligrams \[mg\] and 3 mg) in participants with moderate-to-severe alopecia areata (AA).

Detailed description:

Arms:
arm 1: None arm 2: None arm 3: None

Interventions: intervention 1: Etrasimod intervention 2: Etrasimod intervention 3: Placebo
Intervention descriptions: intervention 1: Etrasimod 2 mg tablet by mouth, once daily intervention 2: Etrasimod 3 mg (1 mg and 2 mg tablets) by mouth, once daily intervention 3: Etrasimod matching placebo tablet by mouth, once daily

Protocol document:
Prot_000.pdf: 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 2 of 100
PROTOCOL HISTORY
Document
Amendment Type
Date
Amendment 2.1
Regional
25 May 2021
Amendment 2.0
Global
25 May 2021
Amendment 1.1
Regional
09 December 2020
Amendment 1.0
Global
09 December 2020
Amendment 0.2
Regional
15 May 2020
Amendment 0.1
Global
15 May 2020
Original Protocol
Not applicable
14 January 2020


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 3 of 100
PROTOCOL SYNOPSIS
Sponsor: Arena Pharmaceuticals, Inc.
Name of Investigational Study Drug: APD334 (etrasimod)
Protocol Title: A Multicenter, Randomized, Double-Blind, Placebo-Controlled, 24-Week Study, with 
a 28-Week Open-Label Extension, to Assess the Safety and Efficacy of Etrasimod in Subjects with 
Moderate-to-Severe Alopecia Areata
Protocol Number: APD334-205
Phase: 2
Country(ies)/Region(s) (planned): United States and Canada
Objectives:
Primary Objective: To assess the safety and efficacy of etrasimod monotherapy (2 mg and 3 mg) in 
subjects with moderate-to-severe alopecia areata (AA) during the Double-Blind Treatment Period.
Secondary Objectives: To assess the long-term safety and efficacy of etrasimod monotherapy (2 mg
and 3 mg) in subjects with moderate-to-severe AA.
To determine the plasma concentration of etrasimod 2 mg and 3 mg in subjects with 
moderate-to-severe AA.
Study Design:
This is a Phase 2, multicenter, randomized, double-blind, placebo-controlled study to assess the safety 
and efficacy of etrasimod 2 mg and 3 mg, once daily for up to 52 weeks in subjects with 
moderate-to-severe AA. The study includes multiple periods: A ≤4-week Screening Period (to 
determine subject eligibility), a 24-week Double-Blind Treatment Period, a 28-week Open-Label
Extension Period, and a 4-week Safety Follow-Up Period for a maximum total study duration of 
60 weeks.
This study will include approximately 78 subjects with moderate-to-severe AA with current episode of 
hair loss for ≥6 months but < 5 years (current episode must also be relatively stable during the last 
6 months with no significant regrowth). 
Subjects will be separated into 2 cohorts as follows:
Cohort 1: All subjects (approximately 36 subjects) enrolled under the original protocol, and 
Amendments 0.1, 0.2, 1.0, and 1.1. 
Subjects were randomized in a 2:1 ratio to receive etrasimod 2 mg or placebo orally, once daily. 
Randomization was stratified by Severity of Alopecia Tool I (SALT I) score (< 100, 100) at 
Day 1/Baseline. Subjects will complete the Double-Blind Treatment Period per their original 
randomization assignment. Subjects who have entered the Open-Label Extension Period prior to 
Amendments 2.0 and 2.1 implementation will transition to 3 mg once daily at their next study visit. 
Subjects who have not entered the Open-Label Extension Period prior to Amendments 2.0 and 2.1 
implementation will receive etrasimod 2 mg from the Week 24 visit to the Week 25 visit and will 
transition at the Week 25 visit to etrasimod 3 mg orally, once daily for the remainder of the Open-Label 
Extension Period.
Cohort 2: All subjects (approximately 42 subjects) enrolled under protocol Amendments 2.0 and 2.1. 
Subjects will be randomized in a 4:1:2 ratio to receive etrasimod 3 mg, etrasimod 2 mg, or placebo 
orally, once daily, in a double-blind manner for the 24-week Double-Blind Treatment Period. 
Randomization will be stratified by SALT I score (< 50, ≥50) at Day 1/Baseline. During the 
Double-Blind Treatment Period, subjects assigned to etrasimod 3 mg will receive etrasimod 2 mg 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 4 of 100
orally, once daily from Day 1 to the Week 1 visit and will transition at the Week 1 visit to etrasimod 
3 mg orally, once daily for the remainder of the Double-Blind Treatment Period. During the 
Open-Label Extension Period, all subjects will receive etrasimod 2 mg orally, once daily from the 
Week 24 visit to the Week 25 visit. At the Week 25 visit all subjects will transition to 3 mg orally, once
daily for the remainder of the Open-Label Extension Period.
a Randomized 2:1 (etrasimod 2 mg:placebo) in the Double-Blind Treatment Period.
b Subjects entering the Open-Label Extension Period (Week 24 visit) before implementation of Amendments 2.0 and 2.1 will 
transition to 3 mg once daily at their next study visit (refer to Section 10.5.7.5, and Appendix 1 for additional information on 
Holter monitoring). Subjects entering the Open-Label Extension Period (Week 24 visit) after implementation of 
Amendments 2.0 and 2.1 will receive etrasimod 2 mg from the Week 24 visit to the Week 25 visit and will transition to 
etrasimod 3 mg at the Week 25 visit. Of note, subjects already in the Open-Label Extension Period at the time of 
Amendments 2.0 and 2.1 implementation may be allowed to continue on etrasimod 2 mg at the Investigator’s discretion 
provided that they have achieved a SALT I score ≤20.
c SFU 1 and SFU 2 are to be conducted 2 and 4 weeks (± 3 days) after last dose of study drug, respectively.
d Randomized 4:1:2 (etrasimod 3 mg:etrasimod 2 mg:placebo) in the Double-Blind Treatment Period. 
* Subjects will initiate treatment on 2 mg etrasimod for 1 week prior to starting 3 mg.
Note: A visit window of ± 1 day is permitted for the Week 1 and Week 25 visits and ± 3 days for the Week 2, 4, 8, 12, 16, 20, 
24, 28, 36, 44, and 52 visits. Subjects who discontinue treatment prematurely, regardless of the reason, should be instructed to 
return for an ET visit within 1 week of when the last dose of study drug was taken, and to return for the Safety Follow-Up 
visits 2 weeks and 4 weeks (± 3 days) after the last dose of study drug.
Note: Refer to Section 6.3.2 for information on re-initiation of treatment after dose interruptions
ET, early termination; N, number (of subjects); SFU, Safety Follow-Up.
Study visits will take place for Screening; Day 1/Baseline; Weeks 1, 2, 4, 8, 12, 16, 20, 24, 25, 28, 36, 
44, and 52, as applicable (Week 1 visit is applicable to Cohort 2 only); and 2 weeks and 4 weeks after 
the last dose of study drug (for Safety Follow-Up). 
Number of Subjects (Planned):
A total of approximately 78 subjects are planned to be enrolled in this study. 
It is estimated that approximately 36 subjects will be enrolled in Cohort 1, including 24 subjects in the 
etrasimod 2 mg group and 12 subjects in the placebo group.
Approximately 42 subjects are planned to be enrolled in Cohort 2, including 24 subjects in the 
etrasimod 3 mg group, 6 subjects in the etrasimod 2 mg group, and 12 subjects in the placebo group. 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 5 of 100
Eligibility Criteria:
Inclusion Criteria:
Subjects must meet ALL of the following inclusion criteria to be eligible for enrollment into the study:
Key inclusion criteria
1.
Men or women between ≥18 and ≤70 years of age at the time of informed consent
2.
Moderate-to-severe AA as assessed by a SALT I score ≥25 and < 95 at Screening and 
Day 1/Baseline. Severity will also be confirmed by central review of photographs taken during 
Screening
3.
Current episode of hair loss for ≥6 months but < 5 years
4.
Stable disease condition (no significant growth of hair) in the last 6 months as assessed by the 
Investigator
5.
Willing to keep the same hair style and color (eg, hair products, process, and timing for hair 
appointments) for the duration of the study
General inclusion criteria
6.
Willing and able to comply with all clinic visits and study-related procedures and understand 
and complete study-related questionnaires
7.
Provide signed informed consent prior to conducting any procedures
8.
Females must meet either a or b of the following criteria and males must meet criterion c to 
qualify for the study:
a.
Female who is not of childbearing potential by one of the following: 

Postmenopausal, defined as no menses for 12 months without an alternative medical 
cause

Permanent sterilization procedure, such as hysterectomy, bilateral salpingectomy, or 
bilateral oophorectomy
b.
Nonpregnant female of childbearing potential and agrees to using a highly effective
contraception method during treatment and for 30 days following treatment that can 
achieve a failure rate of less than 1% per year when used consistently and correctly. The 
following are considered highly effective birth control methods:

Combined (estrogen and progestogen containing) hormonal contraception associated 
with inhibition of ovulation, which may be oral, intravaginal, or transdermal

Progestogen-only hormonal contraception associated with inhibition of ovulation, 
which may be oral, injected, or implanted

Intrauterine device (IUD)

Intrauterine hormone-releasing system

Bilateral tubal occlusion

Vasectomized partner, provided that partner is the sole sexual partner of the female of 
childbearing potential study participant and that the vasectomized partner has received 
medical assessment of the surgical success

Sexual abstinence (complete sexual abstinence defined as refraining from heterosexual 
intercourse for the entire period of risk associated with study drug). The reliability of 
sexual abstinence needs to be evaluated in relation to the duration of the clinical study 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 6 of 100
and the preferred and usual lifestyle of the subject. Periodic abstinence (eg, calendar, 
symptothermal, post-ovulation methods) is not acceptable.
c.
Male with a pregnant or nonpregnant female of childbearing potential partner and agrees to 
using condoms during treatment and for 30 days following treatment
Exclusion Criteria:
Subjects will be excluded from the study if they meet ANY of the following exclusion criteria:
Key exclusionary criteria
1.
History of male or female pattern hair loss > Hamilton stage III or > Ludwig stage II
2.
Other types of alopecia (eg, cicatricial/scarring alopecia [including central centrifugal 
cicatricial alopecia], traction alopecia, or telogen effluvium) or other diseases that could cause 
hair loss
3.
Active scalp inflammation, scalp infection, scalp psoriasis, or any other scalp condition that 
may interfere with the SALT I assessment
4.
Previous use of a Janus kinase (JAK) inhibitor (oral or topical), including participation in 
clinical studies of JAK inhibitors
Exclusionary criteria related to medications, therapies, or skin disease
5.
Phototherapy on scalp within 4 weeks of Screening
6.
Treatment with the following medications within 12 weeks of Screening:
a.
Intralesional or systemic corticosteroids
b.
Systemic glucocorticoids (inhaled or intranasal delivery are not exclusionary)
c.
Immunoglobulin or blood products 
7.
Use of any biological agents (eg, dupilumab, adalimumab, ustekinumab, secukinumab) 
regardless of indication or systemic immunosuppressive/immunomodulating drugs (eg, 
cyclosporine, azathioprine, methotrexate) within 5 half-lives (if known) or 12 weeks before 
Screening, whichever is longer
8.
Treatment with the following medications within 4 weeks of Screening:
a.
Topical corticosteroids
b.
Topical immunotherapy (eg, diphenylcyclopropenone, squaric acid)
c.
Topical calcineurin inhibitors
d.
Topical or oral minoxidil
9.
Use of sphingosine 1-phosphate receptor modulators (eg, fingolimod, siponimod, ozanimod, 
ponesimod), α4β1-integrin receptor antagonists (eg, natalizumab), and lymphocyte-depleting 
therapies (eg, rituximab, cyclophosphamide, bone marrow transplantation, total body 
irradiation) within 6 months before Screening or until lymphocyte count returns to normal, 
whichever is longer
10. History of or planned hair transplant procedure during the study
11. Planned microblading or micropigmentation of the scalp during the study
12. Received any investigational agent, including non-biologic agents and topical agents, within 
5 half-lives (if known) or 4 weeks (whichever is longer) before Screening


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 7 of 100
13. Use of moderate/strong inducers or inhibitors that inhibit or induce at least two of the 
following: Cytochrome P450 (CYP) 2C8, CYP2C9, and CYP3A4 (eg, fluconazole, 
enzalutamide; Table 4) within 4 weeks before Screening. 
Exclusionary criteria related to medical history
14. Known active bacterial, viral, fungal, mycobacterial infection, or other infection (including 
tuberculosis [TB] or atypical mycobacterial disease) or any major episode of infection that 
required hospitalization or treatment with intravenous antibiotics within 4 weeks before 
Screening or during Screening, or oral antibiotics within 2 weeks before Screening or during 
Screening. Superficial fungal infection of the nail bed is allowed
15. Have any of the following conditions or risk factors:
a.
Primary or secondary immunodeficiency syndromes (eg, hereditary immunodeficiency 
syndrome, acquired immunodeficiency syndrome, drug-induced immune deficiency)
b.
History of organ transplant (except corneal transplant)
c.
History of an opportunistic infection (eg, Pneumocystis jirovecii pneumonia, cryptococcal 
meningitis, progressive multifocal leukoencephalopathy [PML])
d.
History of disseminated herpes simplex or disseminated herpes zoster, or any episode of 
herpes zoster
e.
Test positive for human immunodeficiency virus, hepatitis B virus (positive for hepatitis B
surface antigen [HBsAg]), or active hepatitis C virus (HCV) (positive HCV antibody with 
detectable viral load) at Screening
f.
History of active or latent TB (refer to Appendix 3 for details of TB screening and 
interpretation of test results). The following is the EXCEPTION to the exclusion criterion: 

Subjects with treated latent TB or latent TB diagnosed at Screening who have received 
≥2 weeks of TB prophylaxis treatment prior to randomization, ruled out for active TB, 
and have not had recent close contact with a person with active TB. It is the 
responsibility of the Investigator to verify the adequacy of TB prophylaxis treatment 
and provide appropriate documentation. Note: The exception to the exclusion criterion 
outlined above does NOT apply to subjects residing in countries identified by the 
WHO as a high multi-drug resistance (MDR) TB burden country due to the risk of 
latent infection with MDR TB.
16. Received any live or live-attenuated vaccines within 4 weeks before Screening (Section 6.9
offers additional details regarding vaccines)
17. History of malignancy of any organ system (other than localized squamous cell or basal cell 
carcinoma of the skin that have been excised or resolved), treated or untreated, within the past 
5 years
18. Have any of the following conditions or receiving treatments that may affect cardiovascular 
function:
a.
Myocardial infarction, unstable angina, stroke/transient ischemic attack, decompensated 
heart failure requiring hospitalization or Class III/IV heart failure within 8 weeks before 
Screening
b.
History or presence of second-degree or third-degree atrioventricular block, sick sinus 
syndrome, or periods of asystole for > 3 seconds without a functional pacemaker
c.
Recurrent symptomatic bradycardia or recurrent cardiogenic syncope
d.
Screening OR Baseline (Day 1) pre-randomization vital signs (taken in the sitting position) 
with a heart rate (HR) < 50 beats per minute (bpm), systolic blood pressure (BP) 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 8 of 100
< 90 mm Hg, OR diastolic BP < 55 mm Hg. Vital signs may be repeated up to 3 times 
during a visit to confirm abnormal readings
e.
Screening OR Baseline (Day 1) pre-randomization electrocardiogram (ECG) with PR 
interval ≥200 ms or QT interval corrected using Fridericia’s formula (QTcF) ≥450 ms in 
males or ≥470 ms in females
f.
Start, stop, or change dosage of Class I-IV anti-arrhythmic drugs within 1 week of 
Screening
19. A history of or active diabetic retinopathy, uveitis, retinitis pigmentosum, or macular edema. 
Any recent intraocular surgery within 1 year of Screening
20. Active severe pulmonary disease (eg, chronic obstructive pulmonary disease or pulmonary 
fibrosis) or chronic pulmonary disease requiring intravenous corticosteroid treatment or 
hospitalization within 12 months before Screening or during the Screening Period
21. Have forced expiratory volume at 1 second (FEV1) or forced vital capacity (FVC) < 70% of 
predicted values at Screening
22. Have any uncontrolled systemic disease(s) (eg, thyroid disorder, hypertension, diabetes). If the 
condition is considered controlled and the subject is on any medications (eg, thyroid 
medication or hormonal therapy) for treatment of diseases, the subject may be allowed to 
participate but must have been on a stable dose for at least 6 months prior to Screening and 
remain on a stable dose throughout the study.
Exclusionary criteria related to test or laboratory results (performed by central laboratory)
Note: A confirmed result means there have been 2 consecutive assessments showing a consistent 
abnormal, clinically relevant result.
23. Confirmed total white blood cell (WBC) count ≤3.5 × 109 cells/L OR absolute neutrophil 
count (ANC) ≤1.5 × 109 cells/L OR absolute lymphocyte count (ALC) < 1.0 × 109 cells/L at 
Screening
24. Confirmed estimated glomerular filtration rate < 30 mL/min/1.73 m2 by the Chronic Kidney 
Disease Epidemiology Collaboration equation at Screening
25. Confirmed aspartate aminotransferase (AST) or alanine aminotransferase (ALT) > 2 × upper 
limit of normal (ULN) and total bilirubin > 1.5 × ULN (unless consistent with a history of 
Gilbert’s Syndrome) at Screening
General exclusionary criteria
26. Lactating female who is breastfeeding
27. Any acute illness or medical condition including psychiatric disease, cognitive impairment, and 
alcohol/drug abuse/dependence, or signs/symptoms suspicious for a serious disease that, in the 
Investigator’s opinion, could put the subject at increased risk for safety event(s), could interfere 
with participation in the study according to the study protocol, or with the ability of the subject 
to cooperate and comply with the study procedures
Note: If a subject fails ≥1 Screening laboratory (or other) assessment criteria, the assessment(s) may be 
repeated once at the discretion of the Investigator, and the subject may be randomized if criteria are 
then met, provided the assessments are completed within the Screening Period. Any rescreening 
laboratory assessments beyond 1 time will need to be discussed with the Medical Monitor before 
proceeding.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 9 of 100
Exclusion Criteria (for the Open-Label Extension Period):
Subjects will be excluded from the Open-Label Extension Period if they meet the following exclusion 
criterion at the Week 24 visit:
1.
Week 24 predose vital signs (taken in the sitting position) with an HR < 50 bpm, systolic BP 
< 90 mm Hg, OR diastolic BP < 55 mm Hg. Vital signs may be repeated up to 3 times during 
the visit to confirm abnormal readings.
2.
Confirmed predose Week 24 ECG with PR interval ≥200 ms or QT interval corrected using 
Fridericia’s formula (QTcF) ≥450 ms in males or ≥470 ms in females. Presence on Week 24 
ECG of second-degree or third-degree atrioventricular block, sick sinus syndrome, or periods 
of asystole for > 3 seconds without a functional pacemaker.
3.
The Investigator considers the subject to be unsuitable for any reason to participate in the 
Open-Label Extension study. 
Note: If a subject fails to enter the Open-Label Extension Period due to Exclusion Criterion 1 or 2, the 
assessment may be repeated once at the discretion of the Investigator, and the subject may be dosed if 
the criterion is then met, provided the assessment is completed within the Week 24 visit window. Any 
repeated vital sign assessments beyond 1 time will need to be discussed with the Medical Monitor 
before proceeding.
Test Product, Dose, and Mode of Administration:
Etrasimod 2 mg in the Double-Blind Treatment Period of Cohort 1 will be administered daily as a 2 mg 
tablet. Etrasimod 2 mg in the Double-Blind Treatment Period of Cohort 2 will be administered daily as 
a 2 mg tablet and a placebo tablet. Etrasimod 2 mg may be administered in the Open-Label Extension 
Period of Cohort 1 daily as a 2 mg tablet. 
Etrasimod 3 mg (in either the Double-Blind Treatment Period or the Open-Label Extension Period)
will be administered daily as a 2 mg etrasimod tablet and a 1 mg etrasimod tablet. 
Etrasimod tablets will be taken orally once daily during the Double-Blind Treatment Period and/or
Open-Label Extension Period.
Duration of Study:
The overall duration of the study will be up to 60 weeks, including:

Up to 4-week Screening Period

24-week Double-Blind Treatment Period

28-week Open-Label Extension Period

4-week Safety Follow-Up Period after the last dose of treatment
Reference Therapy, Dose, and Mode of Administration:
Subjects assigned to the placebo group in the Double-Blind Treatment Period of Cohort 1 will be 
administered 1 matching placebo tablet orally once daily. Subjects assigned to the placebo group in the 
Double-Blind Treatment Period of Cohort 2 will be administered 2 matching placebo tablets orally 
once daily. There is no reference therapy (no placebo) treatment arm during the Open-Label Extension 
Period.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 10 of 100
Safety Assessments:
Safety will be assessed through the incidence of adverse events (AEs), clinical laboratory findings, 
physical examinations, ECGs (measured 4 hours following the first dose in the Double-Blind 
Treatment Period and the first dose in the Open-Label Extension Period), Holter monitoring (measured 
for 8 hours following dosing at Day 1 and Week 1 visits in the Double-Blind Treatment Period for 
Cohort 2, following dosing at Week 24 and Week 25 visits in the Open-Label Extension Period for 
Cohort 2, at the Week 24 visit and following transition from 2 mg to 3 mg in the Open-Label Extension 
Period for subjects in Cohort 1, and when a subject re-initiates study drug after a dosing interruption of 
a specified period [Section 6.3.2]), vital signs (measured hourly for at least 4 hours following the first 
dose in the Double-Blind Treatment Period and the first dose in the Open-Label Extension Period), 
pulmonary function tests (FEV1, FVC, and forced expiratory flow at 25 to 75% measurements), 
diffusing capacity of the lungs for carbon monoxide (where locally available), ophthalmoscopy, and 
optical coherence tomography.
Efficacy Assessments:
Efficacy assessments include percent change, change, and categorical percent change in hair loss 
(SALT I score); the following patient-reported outcomes (PROs): AA Symptom Impact Scale (AASIS) 
and AA Quality of Life Index (AA-QLI); serum biomarkers; and photographs of the full scalp for all 
subjects, of the eyebrows and eyelashes for subjects who have hair loss in these areas at 
Day 1/Baseline, and of the fingernails for subjects with fingernail changes related to AA (eg, pitting, 
white spots, and roughness) at Day 1/Baseline. 
The definitions used to assess the primary, secondary, and exploratory efficacy outcomes are described 
below. 
Primary Efficacy Endpoint

Percent change from Baseline in SALT I at Week 24
Secondary Efficacy Endpoints

Change from Baseline in SALT I at Week 24

Proportion of subjects achieving a ≥30% improvement from Baseline in SALT I at 
Week 24

Proportion of subjects achieving a ≥50% improvement from Baseline in SALT I at 
Week 24

Proportion of subjects achieving a ≥75% improvement from Baseline in SALT I at 
Week 24
Exploratory Efficacy Endpoints

Percent change from Baseline in SALT I over time

Change from Baseline in SALT I over time

Proportion of subjects achieving a ≥30% improvement from Baseline in SALT I over time

Proportion of subjects achieving a ≥50% improvement from Baseline in SALT I over time

Proportion of subjects achieving a ≥75% improvement from Baseline in SALT I over time

Proportion of subjects achieving a ≥90% improvement from Baseline in SALT I at 
Week 24


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 11 of 100

Change from Baseline in AASIS at Week 24

Change from Baseline in AA-QLI at Week 24

Change from Baseline in serum biomarkers at Week 24

Percent change from Baseline in peripheral lymphocyte counts at Week 24

Percent change from Baseline in SALT I at Week 24 as assessed by blinded central review

Change from Baseline in SALT I at Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥30% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥50% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥75% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥90% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review
Efficacy Assessments During the Open-Label Extension Period
These efficacy outcomes will be measured at scheduled visits up to 52 weeks: SALT I; peripheral 
lymphocyte counts; AASIS; AA-QLI; serum biomarkers; photographs of the full scalp for all subjects, 
of the eyebrows and eyelashes for subjects who have hair loss in these areas at Day 1/Baseline, and of 
the fingernails for subjects with fingernail changes related to AA (eg, pitting, white spots, and 
roughness) at Day 1/Baseline.
Pharmacokinetic Assessments:
Blood samples (4 mL) for plasma analysis of etrasimod will be collected at the following timepoints 
from all subjects who received ≥1 dose of study drug (etrasimod or placebo):

Predose (within 60 minutes prior to dosing) and at 4 hours (± 15 minutes) postdose (after 
ECG) on Day 1 and Week 24

Predose (trough; within 60 minutes prior to dosing) at Weeks 1 (Cohort 2 only), 2, 4, 8, 12, 
16, 20, 25, 28, 36, and 44

Anytime at Week 52 or at the ET visit, and the follow-up visits, as applicable

If possible, at the time of any serious AE (SAE), AE leading to study drug discontinuation, 
or AE of special interest (AESI). The time of the last study drug dose should be 
documented
Plasma pharmacokinetic (PK) samples may also be used for profiling of drug binding proteins, 
bioanalytical method validation purposes, stability assessments, metabolite assessments, or to assess 
other actions of etrasimod with plasma constituents.
Not all collected PK samples from placebo-treated subjects during the Double-Blind Treatment Period 
will be assayed.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 12 of 100
Statistical Methods
Sample Size:
Subjects will be randomized as follows:

Cohort 1: 36 subjects in 2:1 randomization ratio (24 subjects to etrasimod 2 mg and 12 subjects 
to placebo)

Cohort 2: 42 subjects with SALT I < 95 at Baseline in 4:1:2 randomization ratio (24 subjects to 
etrasimod 3 mg, 6 subjects to etrasimod 2 mg, and 12 subjects to placebo)
Assuming a 15% drop-out rate from the study over 24 weeks, at least 35 treatment completers 
(20 subjects to etrasimod 3 mg, 5 subjects to etrasimod 2 mg, and 10 subjects to placebo from Cohort
2; plus subjects from Cohort 1 with SALT I < 95 at Baseline) at Week 24 will provide at least 80% and 
47% power to detect a treatment difference of 20% for etrasimod 3 mg and etrasimod 2 mg from 
placebo, respectively, in the percent change from Baseline in SALT I at Week 24 by a 2-sample t-test 
using a 2-sided significance test level of 0.05 and common standard deviation (SD) of 17.8%.
Safety Analysis:
All safety data will be listed and summarized by treatment group. All treatment-emergent adverse 
events (TEAEs) will be coded using the Medical Dictionary for Regulatory Activities and tabulated by 
System Organ Class and Preferred Term. Incidence of AEs, SAEs, AEs leading to study drug
discontinuation, and AESIs will be summarized and presented in descending order of frequency. 
Laboratory parameters will be summarized at each scheduled assessment timepoint using descriptive 
statistics. Associated laboratory parameters such as hepatic enzymes, renal function, and hematology 
values will be grouped and presented together. Individual subject values will be listed and values 
outside of the standard reference range will be noted. Shift tables and analyses of changes from 
Baseline will be produced. The change from Baseline for each of the vital signs and ECG parameters 
will be summarized. Incidence of abnormal vital signs parameters and outlier ECG results will be 
tabulated. Other safety assessments will also be analyzed in a descriptive way.
Efficacy Analysis:
The primary and secondary endpoints will be analyzed using the Full Analysis Set (FAS). The 
exploratory endpoints will be analyzed using the FAS and the Randomized Set. Other important 
statistical considerations, such as missing data imputation strategies, sensitivity analyses, and subgroup 
analyses will be described in the Statistical Analysis Plan.
The primary endpoint of percent change from Baseline to Week 24 in SALT I will be analyzed with a 
mixed-effects model repeated measures (MMRM) model. The MMRM model will include treatment 
group, visit, and interaction of treatment-by-visit as factors, and disease duration and Baseline SALT I 
score as covariates. An unstructured covariance matrix will be specified for the MMRM model. Least 
squares (LS) means at each visit and LS mean differences between treatment groups (each of the active 
arms versus placebo only) with p-values and corresponding 95% confidence intervals (CIs) will be 
reported. This method will also be applied to other score-based or continuous measures.
Proportion-based secondary endpoints at Week 24 will be analyzed using the 
Cochran-Mantel-Haenszel test method adjusted for the randomization stratification factor SALT I 
(< 50, ≥50) at Baseline. Subjects with missing data for any reason will be considered as 
‘non-responder’ or ‘failure’ for the endpoint. The number and percentage of subjects achieving the goal 
and the difference in proportion between treatment groups achieving the goal, along with p-values and 
the 95% CIs, will be reported.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 13 of 100
Pharmacokinetic Analysis:
A descriptive summary of observed plasma concentrations will be displayed by time.
Interim Analysis:
No formal interim analysis of efficacy is planned. Periodic blinded assessments of the assumption 
regarding the SD of the percent change in SALT I from Baseline to Week 24 will be conducted. The 
planned sample size will not be reduced as a result of the SD assessments.
Statistical Methods for the Open-Label Extension Period:
No formal statistical testing will be performed. Only descriptive statistics will be provided.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 14 of 100
TABLE OF CONTENTS
CLINICAL STUDY PROTOCOL ..................................................................................................1
PROTOCOL HISTORY..................................................................................................................2
PROTOCOL SYNOPSIS ................................................................................................................3
TABLE OF CONTENTS...............................................................................................................14
LIST OF APPENDICES................................................................................................................18
LIST OF TABLES.........................................................................................................................19
LIST OF FIGURES .......................................................................................................................19
LIST OF ABBREVIATIONS AND DEFINITIONS OF TERMS................................................20
1.
INTRODUCTION......................................................................................................23
1.1.
Alopecia Areata ..........................................................................................................23
1.1.1.
Etrasimod....................................................................................................................24
1.2.
Benefit-Risk Considerations.......................................................................................24
2.
OBJECTIVES.............................................................................................................26
3.
STUDY DESIGN .......................................................................................................26
3.1.
Overall Design............................................................................................................26
3.2.
Discussion and Scientific Rationale for Study Design...............................................28
3.3.
Rationale for Dose Selection ......................................................................................28
3.4.
End of Study ...............................................................................................................29
4.
STUDY POPULATION.............................................................................................29
4.1.
Inclusion Criteria ........................................................................................................29
4.2.
Exclusion Criteria.......................................................................................................31
4.3.
Exclusion Criteria (for the Open-Label Extension Period) ........................................34
5.
SUBJECT RESTRICTIONS ......................................................................................34
6.
STUDY DRUG...........................................................................................................35
6.1.
Study Drug(s) Administered.......................................................................................35
6.2.
Identity of Study Drugs ..............................................................................................35
6.2.1.
Etrasimod....................................................................................................................35
6.2.2.
Placebo........................................................................................................................35
6.3.
Dosage and Administration ........................................................................................35
6.3.1.
Instructions for Missed Dose(s)..................................................................................37
6.3.2.
Dose Interruptions ......................................................................................................37


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 15 of 100
6.4.
Method of Assigning Subjects to Treatment ..............................................................37
6.5.
Selection and Timing of Dose for Each Subject.........................................................38
6.6.
Blinding ......................................................................................................................38
6.7.
Treatment Compliance................................................................................................39
6.8.
Concomitant Therapy .................................................................................................39
6.8.1.
Allowed Concomitant Therapy...................................................................................39
6.8.2.
Prohibited Concomitant Therapy and Procedures ......................................................39
6.9.
Vaccinations ...............................................................................................................41
7.
STUDY DRUG MATERIALS MANAGEMENT.....................................................41
7.1.
Packaging and Labeling..............................................................................................41
7.2.
Storage and Handling .................................................................................................42
7.3.
Preparation..................................................................................................................42
7.4.
Accountability.............................................................................................................42
7.5.
Retention and Disposal...............................................................................................42
8.
REMOVAL OF SUBJECTS FROM THERAPY OR ASSESSMENT .....................42
8.1.
Discontinuation of Study Drug...................................................................................42
8.2.
Discontinuation from the Study..................................................................................43
8.3.
Lost to Follow-Up.......................................................................................................43
8.4.
Premature Termination of the Study or a Study Site..................................................44
9.
STUDY PERIODS .....................................................................................................44
9.1.
Screening and Eligibility ............................................................................................44
9.2.
Randomization and Double-Blind Treatment Period .................................................45
9.2.1.
Day 1 Pre-Randomization...........................................................................................45
9.2.2.
Day 1 Post-Randomization.........................................................................................46
9.2.3.
Double-Blind Treatment Period Study Visits After Day 1.........................................47
9.3.
Open-Label Extension Period.....................................................................................47
9.4.
Follow-Up/End of Study.............................................................................................47
9.5.
Early Study Drug Termination ...................................................................................48
9.6.
End of Study Visit ......................................................................................................48
10.
STUDY ASSESSMENTS AND PROCEDURES......................................................48
10.1.
Subject Informed Consent ..........................................................................................48
10.2.
Screening and Eligibility ............................................................................................48
10.2.1.
Rescreening.................................................................................................................49


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 16 of 100
10.2.2.
Demography and Other Subject Characteristics.........................................................49
10.2.3.
Social History .............................................................................................................49
10.2.4.
Prior and Ongoing Therapies......................................................................................49
10.2.5.
Medical History/Alopecia Areata History..................................................................49
10.2.6.
Pregnancy Testing ......................................................................................................49
10.2.7.
Active Infections or Live Vaccines ............................................................................50
10.2.7.1.
Known Active Infections............................................................................................50
10.2.7.2.
Known or Suspected Immunodeficiencies .................................................................50
10.2.8.
Tuberculosis................................................................................................................50
10.3.
Efficacy Assessments .................................................................................................51
10.3.1.
Severity of Alopecia Tool...........................................................................................51
10.3.2.
Scalp, Eyebrows, Eyelashes, and Fingernails Photography .......................................52
10.3.3.
Biomarkers..................................................................................................................53
10.3.4.
Patient-Reported Outcomes........................................................................................53
10.3.4.1.
Alopecia Areata Symptom Impact Scale....................................................................53
10.3.4.2.
Alopecia Areata-Related Quality of Life Index..........................................................54
10.4.
Pharmacokinetic Assessments....................................................................................54
10.5.
Safety Assessments.....................................................................................................55
10.5.1.
Vital Signs ..................................................................................................................55
10.5.2.
Physical Examinations................................................................................................55
10.5.3.
Electrocardiography....................................................................................................55
10.5.4.
Clinical Laboratory Assessments ...............................................................................56
10.5.5.
Pulmonary Function Test............................................................................................58
10.5.6.
Ophthalmoscopy and Optical Coherence ...................................................................58
10.5.7.
Safety Monitoring Guidance.......................................................................................59
10.5.7.1.
Drug-Induced Liver Injury .........................................................................................59
10.5.7.2.
Total WBC, WBC Differential, Lymphocyte Counts, and Infections........................60
10.5.7.3.
Guidance on Monitoring Subjects for Infections........................................................60
10.5.7.4.
Guidance for Cardiac Monitoring Following Treatment Initiation or 
Re-Initiation................................................................................................................61
10.5.7.5.
Holter Monitoring.......................................................................................................64
10.5.7.6.
Pulmonary Function Monitoring ................................................................................64
10.5.7.7.
Ophthalmic Symptom Monitoring..............................................................................64


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 17 of 100
10.5.8.
Adverse Events ...........................................................................................................65
10.5.8.1.
Definitions ..................................................................................................................65
10.5.8.2.
Eliciting, Recording, and Reporting Adverse Events.................................................68
10.5.8.3.
Reporting Serious Adverse Events.............................................................................69
10.5.9.
Pregnancy ...................................................................................................................70
10.6.
Procedures for Overdose.............................................................................................70
11.
PLANNED STATISTICAL METHODS...................................................................71
11.1.
General Considerations...............................................................................................71
11.2.
Determination of Sample Size....................................................................................71
11.3.
Analysis Sets...............................................................................................................72
11.4.
Handling of Dropouts and Missing Data....................................................................72
11.5.
Demographics and Baseline Characteristics...............................................................72
11.6.
Efficacy Analyses .......................................................................................................72
11.6.1.
Endpoint Definitions...................................................................................................73
11.6.1.1.
Primary Efficacy Endpoint .........................................................................................73
11.6.1.2.
Secondary Efficacy Endpoints....................................................................................73
11.6.1.3.
Exploratory Efficacy Endpoints .................................................................................73
11.6.1.4.
Efficacy Assessments During the Open-Label Extension Period...............................74
11.6.2.
Pharmacokinetics........................................................................................................74
11.6.3.
Subgroup Analyses .....................................................................................................75
11.7.
Testing Strategy..........................................................................................................75
11.8.
Interim Analysis..........................................................................................................75
11.9.
Safety Analyses ..........................................................................................................75
11.9.1.
Safety Endpoints.........................................................................................................75
11.9.2.
Adverse Events ...........................................................................................................75
11.9.3.
Extent of Exposure .....................................................................................................76
11.9.4.
Clinical Laboratory Parameters ..................................................................................76
11.9.5.
Holter Recording ........................................................................................................76
11.9.6.
Electrocardiograms and Vital Signs ...........................................................................76
11.9.7.
Physical Examination .................................................................................................77
11.10.
Statistical Considerations for the Open-Label Extension Period ...............................77
12.
ETHICAL CONSIDERATIONS................................................................................77
12.1.
Ethical Conduct of the Study......................................................................................77


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 18 of 100
12.2.
Institutional Review Board or Independent Ethics Committee Approval..................77
12.3.
Informed Consent .......................................................................................................78
12.4.
Confidentiality............................................................................................................78
12.5.
Protocol Compliance ..................................................................................................78
13.
QUALITY CONTROL AND QUALITY ASSURANCE .........................................80
13.1.
Training of Study Site Personnel................................................................................80
13.2.
Monitoring..................................................................................................................80
13.3.
Audit ...........................................................................................................................80
14.
DATA HANDLING AND RECORD KEEPING......................................................81
14.1.
Data Management.......................................................................................................81
14.1.1.
Case Report Forms .....................................................................................................81
14.1.2.
Source Documents......................................................................................................81
14.2.
Study Documentation and Records Retention............................................................81
14.3.
Clinical Study Report .................................................................................................82
14.4.
Disclosure of Study Results........................................................................................82
15.
RESPONSIBILITIES .................................................................................................82
15.1.
Investigator Responsibilities.......................................................................................82
15.2.
Sponsor Responsibilities.............................................................................................83
16.
REFERENCES ...........................................................................................................84
LIST OF APPENDICES
APPENDIX 1:
SCHEDULE OF ASSESSMENTS – COHORT 1.............................................88
APPENDIX 2:
SCHEDULE OF ASSESSMENTS – COHORT 2.............................................91
APPENDIX 3:
TUBERCULOSIS SCREENING.......................................................................94
APPENDIX 4:
GRADING OF CLINICAL AND LABORATORY ADVERSE 
EVENTS.....................................................................................................................96
APPENDIX 5:
GUIDANCE FOR THE MANAGEMENT OF CLINICAL AND 
LABORATORY ADVERSE EVENTS .....................................................................98
APPENDIX 6:
GUIDANCE FOR THE ASSESSMENT OF POTENTIAL 
PROGRESSIVE MULTIFOCAL LEUKOENCEPHALOPATHY...........................99
APPENDIX 7:
INVESTIGATOR SIGNATURE.....................................................................100


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 19 of 100
LIST OF TABLES
Table 1:
Study Drugs ................................................................................................................35
Table 2:
Study Drug Dosage and Administration for Cohort 1................................................36
Table 3:
Study Drug Dosage and Administration for Cohort 2................................................36
Table 4:
Examples of Cytochrome P450 Inhibitors and Inducers ............................................40
Table 5:
Clinical Laboratory Tests ...........................................................................................57
Table 6:
Procedures to be Performed During the Cardiac Monitoring Period .........................62
Table 7:
Discharge Criteria After Cardiac Monitoring.............................................................62
Table 8:
Discontinuation of Study Drug Related to Postdose Cardiac Monitoring..................63
Table 9:
Analysis Sets...............................................................................................................72
Table 10:
Example of CTCAE Terms and Grading for Clinical Adverse Events......................96
Table 11:
Example of CTCAE Terms and Grading for Laboratory Abnormalities and 
Pulmonary Functions Tests.........................................................................................97
LIST OF FIGURES
Figure 1:
Schematic Diagram of Study Design..........................................................................27
Figure 2:
Visual Aid for Estimating Percentage Scalp Hair Loss Using the Severity of 
Alopecia Tool .............................................................................................................52
Figure 3:
Algorithm for the Management of Clinical and Safety Assessment-Related 
Adverse Events ...........................................................................................................98
Figure 4:
Progressive Multifocal Leukoencephalopathy Case Evaluation Algorithm...............99


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 20 of 100
LIST OF ABBREVIATIONS AND DEFINITIONS OF TERMS
Abbreviation
Explanation
AA
alopecia areata
AAD
American Academy of Dermatology
AA-QLI
Alopecia Areata Quality of Life Index
AASIS
Alopecia Areata Symptom Impact Scale
AD
atopic dermatitis
ADR
adverse drug reaction
AE
adverse event
AESI
adverse event of special interest
ALC
absolute lymphocyte count
ALT
alanine aminotransferase
ANC
absolute neutrophil count
AST
aspartate aminotransferase
ATS
American Thoracic Society
AV
atrioventricular
β-hCG
beta-human chorionic gonadotropin
BP
blood pressure
bpm
beats per minute
CD
Crohn's disease
CFR
Code of Federal Regulations
cGMP
current Good Manufacturing Practices
CKD-EPI
Chronic Kidney Disease Epidemiology Collaboration
CI
confidence interval
CMP
Clinical Monitoring Plan
COVID-19
coronavirus disease 2019
CRO
contract research organization
CTCAE
Common Terminology Criteria for Adverse Events
CYP
cytochrome P450
DLCO
diffusing capacity of the lungs for carbon monoxide
ECG
electrocardiogram
eCRF
electronic case report form
ET
early termination
FA
fluorescein angiography
FAS
Full Analysis Set


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 21 of 100
Abbreviation
Explanation
FDA
Food and Drug Administration
FEF 25-75
forced expiratory flow at 25% to 75%
FEV1
forced expiratory volume at 1 second
FSH
follicle-stimulating hormone
FVC
forced vital capacity
GCP
Good Clinical Practice
HBsAg
hepatitis B surface antigen
HCV
hepatitis C virus
HIV
human immunodeficiency virus
HR
heart rate
IB
Investigator’s Brochure
ICF
informed consent form
ICH
International Council for Harmonisation of Technical 
Requirements for Pharmaceuticals for Human Use
IEC
Independent Ethics Committee
IGRA
interferon-gamma release assay
IMM
Independent Medical Monitor
IND
Investigational New Drug
IRB
Institutional Review Board
IUD
intrauterine device
IWRS
Interactive Web Response System
JAK
Janus kinase
LS
least squares
MDR
multi-drug resistance
mFAS
Modified Full Analysis Set
MMRM
mixed-effects model repeated measures
OCT
optical coherence tomography
PFT
pulmonary function test
PK
pharmacokinetic(s)
PML
progressive multifocal leukoencephalopathy
PRO
patient-reported outcome
QTc
QT interval corrected
QTcF
QT interval corrected using Fridericia’s formula
CCI


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 22 of 100
Abbreviation
Explanation
RSI
Reference Safety Information
S1P
sphingosine 1-phosphate 
S1P1,4,5
sphingosine 1-phosphate receptors 1, 4, and 5
SAE
serious adverse event
SALT I
Severity of Alopecia Tool I
SAP
Statistical Analysis Plan
SARS-CoV-2
severe acute respiratory syndrome coronavirus 2
SD
standard deviation
SFU
Safety Follow-Up
SOP
standard operating procedure
TB
tuberculosis
TEAE
treatment-emergent adverse event
TMF
trial master file
TST
tuberculin skin test
UC
ulcerative colitis
UDP
uridine diphosphate
UGT
UDP glucuronosyltransferase
ULN
upper limit of normal
US
United States
WBC
white blood cell
WHO
World Health Organization


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 23 of 100
1.
INTRODUCTION
1.1.
Alopecia Areata
Alopecia areata (AA) is a T-cell-mediated autoimmune skin disorder with unmet medical need 
that causes non-scarring patchy hair loss, most often on the scalp. The disease may be limited to 
1 or more discrete, round or oval patches of hair loss the size of a coin on the scalp, or it may 
progress to full hair loss of the scalp (alopecia totalis) or the entire body (alopecia universalis)
(Hanlon 2019). The course of disease is unpredictable, with spontaneous regrowth of hair 
occurring in 80% of patients within the first year, and sudden relapse at any given time (Islam 
2015, MacLean 2013). Patients with extensive disease (at least 50% total scalp hair loss) rarely 
have spontaneous hair regrowth (Renert-Yuval 2017). Patients with persistent 
moderate-to-severe AA also often suffer tremendous emotional and psychosocial distress and 
reduced quality of life as a result of their hair loss (de Hollanda 2014). Thus, psychosocial 
support and therapy is an important part of disease management, as this often-disfiguring disease 
can be psychosocially burdensome (Villasante Fricke 2015).
The estimated lifetime risk of AA is 1.7% among the general population (Safavi 1995) and 
represents the second most common form of human hair loss, second only to androgenetic 
alopecia (Villasante Fricke 2015). AA affects both sexes across all ethnicities (Hordinsky 2014)
with most patients experiencing their first patch of hair loss before reaching adulthood
(Alkhalifah 2010a).
The pathogenesis of AA is still not fully known, but a combination of factors such as 
autoimmunity, atopic state, genetic background, non-specific immune reactions, and emotional 
stress are thought to play a role (Sardesai 2012). The hair cycle consists of 3 phases: the growth 
phase (anagen), the resting phase (catagen), and the shedding phase (telogen). Ninety percent of 
hairs are in the anagen phase (Al Aboud 2019), which can last years (Plowman 2018). In AA, 
CD4+ and CD8+ T cells damage the anagen hair follicle, leading to loss of the growing hair shaft
(Villasante Fricke 2015, Xing 2014). CD8+ T cells are present in significantly lower quantities 
than CD4+ cells (Gilhar 2012), yet a subset (CD8+ NKG2D+ T cells) are both necessary and 
sufficient to induce AA in rodents (Xing 2014). A predominant Th1 cytokine profile has been 
discovered at the site of AA lesions (Islam 2015, Petukhova 2010). Additionally, a genome-wide 
association study demonstrated a genetic predisposition to AA (Petukhova 2010).
To date, no cure has been found, and no therapy has been able to prevent disease relapse
(Villasante Fricke 2015). There are also currently no approved drugs for the treatment of AA and 
success rates of available treatment options for hair loss in this population vary depending on the 
extent and duration of disease (Alkhalifah 2010b). Such treatments and their limitations include
(Mikhaylov 2019):

Topical therapies such as corticosteroids and calcineurin inhibitors that have low 
efficacy due to limited penetration

Intralesional steroid injections that cannot be used for large areas

Systemic treatments (ie, cyclosporine and oral corticosteroids) that result in general 
immunosuppression


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 24 of 100
Thus, there is a large unmet medical need for safe and more targeted treatments for patients with 
AA. To encourage clinical investigations of potential treatments for AA, the National Alopecia 
Areata Foundation developed a uniform protocol to provide a framework of suggested
inclusions/exclusions, safety, and outcome assessment measures (Solomon 2015); the uniform 
protocol served as a resource for the development of Study APD334-205.
1.1.1.
Etrasimod
Etrasimod (APD334) is an orally administered, synthetic, selective modulator of sphingosine 
1-phosphate (S1P) receptors 1, 4, and 5 (S1P1,4,5) that is being developed to treat 
immune-mediated inflammatory disorders.
S1P1 is a cell surface expressed G protein-coupled receptor that has been shown to regulate 
lymphocyte migration out of lymphoid tissues (Brinkmann 2010). Synthetic small molecule S1P1
agonists have been observed to act as functional antagonists by inducing sustained receptor 
internalization, thus inhibiting lymphocyte migration out of lymphoid tissues and lowering the 
amount of peripheral blood lymphocytes available to be recruited to sites of inflammation. In 
theory, a reduction in the number of circulating lymphocytes translates to less pro-inflammatory 
cytokines release, which mediates tissue damage (Nielsen 2017).
Modulation of the S1P/S1P receptor axis is thought to be a potential therapeutic approach to the 
management of a variety of immune-mediated disorders; as such, etrasimod may provide 
therapeutic benefit to patients with AA. Consistent with this hypothesis, S1P receptor modulators 
have been shown to be clinically beneficial in other T cell-mediated diseases including, but not 
limited to, inflammatory bowel disease, multiple sclerosis, and plaque psoriasis (Brinkmann 
2010, Kappos 2010, Sandborn 2016, Vaclavkova 2014). Etrasimod demonstrated positive results 
in a Phase 2, randomized, double-blind, placebo-controlled study in subjects with moderately to 
severely active ulcerative colitis (UC) (Study APD334-003 (Cabell 2018) and its open-label 
extension Study APD334-005 (Cabell 2019)). Etrasimod significantly reduced circulating 
lymphocyte counts and demonstrated consistent and clinically meaningful improvements in 
endpoint measures reflecting cardinal symptoms of UC, and objective findings of endoscopic 
colorectal mucosal healing (Peyrin-Biroulet 2019, Sandborn 2018, Sandborn 2020, Vermeire 
2019).
A complete summary of the nonclinical and clinical data relevant to etrasimod and its study in 
human subjects is provided in the current edition of the Investigator’s Brochure (IB).
1.2.
Benefit-Risk Considerations
As described in Section 1.1.1, modulation of the S1P/S1P receptor axis is thought to be a 
potential therapeutic approach to the management of a variety of immune-mediated disorders; as 
such, etrasimod may provide therapeutic benefit to patients with AA.
Etrasimod has been found to be safe and well-tolerated in subjects who have been dosed with the 
investigational drug. The safety and tolerability of etrasimod has been evaluated in Phase 1 
studies with healthy adult subjects at single doses up to 5 mg and repeated doses up to 2 mg once 
daily without dose escalation and 4 mg once daily with dose escalation. Etrasimod has already 
demonstrated beneficial effects in another autoimmune inflammatory disease, UC.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 25 of 100
While there have not been notable safety concerns with vital signs, electrocardiograms (ECGs), 
pulmonary function tests (PFTs), ophthalmoscopy, or laboratory test results with etrasimod, 
based on the mechanism of action of etrasimod and prior experience with S1P modulators 
fingolimod and siponimod, monitoring for these specific safety parameters is planned for this 
study. This monitoring includes PFTs, cardiac monitoring at first dose, when initiating 3 mg 
etrasimod, and on treatment re-initiation after a defined period of treatment interruption, liver 
function tests, and ophthalmoscopy with optical coherence tomography (OCT). Based on its 
mechanism of action, etrasimod is expected to dose-dependently reduce lymphocyte counts. This 
reduction is reversible, with lymphocyte counts returning to within normal limits following study 
drug discontinuation. Lymphocyte reduction may increase the risk of infections in some subjects. 
Any subject with a confirmed lymphocyte measurement < 0.2 × 109 cells/L will be discontinued 
from study drug. Thus, serial assessment of white blood cell count and differential will be 
performed to assess the risk for serious and atypical infections, and study subjects will be closely 
monitored by Investigators.
S1P receptor modulators are associated with an expected, on target dose-dependent effect of 
reducing heart rate (HR) upon first dosing with HR recovery towards predose Baseline thereafter 
(Camm 2014). There have been no reported cases of symptomatic bradycardia on first dose, and 
rare first- or second-degree atrioventricular (AV) block found on ECG has been asymptomatic 
and transient (ie, spontaneous resolution) with etrasimod. A modest S1P1-mediated HR reduction 
is maximal on the first day of dosing with etrasimod, which typically peaks approximately 
3 hours postdose on Day 1 with recovery thereafter. In Study APD334-003, the mean transient 
HR decrease did not exceed 10 beats per minute (bpm) from Baseline on Day 1 up to 8 hours 
after dosing in all treatment groups, with the mean nadir of HR lowering for 2 mg etrasimod 
occurring 3 hours after dosing. This study includes an etrasimod 3 mg treatment group (refer to 
Section 3.3 for dose selection rationale). To attenuate the magnitude of HR reduction with the 
first etrasimod 3 mg dose, subjects assigned to etrasimod 3 mg will receive 2 mg once daily for 
1 week, then escalate to 3 mg once daily; Phase 1 thorough QT (TQT) Study APD334-008 used 
a similar dosing paradigm. In Study APD334-008, the mean placebo-corrected change from 
baseline in HR was larger on Day 1 following 2 mg than on Day 8 and Day 13 when doses were 
escalated to 3 and 4 mg, respectively.
Subjects with certain cardiac risks, those with certain cardiac risks (eg, recent myocardial 
infarction, cardiac conduction delay, recurrent symptomatic bradycardia or syncope) will be 
excluded from the study. HR will be monitored closely via ECG and vital sign readings during 
the study, and direct observation will be performed at first dose (Double-Blind Treatment Period 
and Open-Label Extension Period) and on treatment re-initiation after a defined period of 
treatment interruption (refer to Section 10.5.7.4 for additional information on Day 1 monitoring).
In addition to first-dose cardiac monitoring, continuous Holter monitoring (refer to
Section 10.5.7.5) will be measured for 8 hours following dosing at Day 1 and Week 1 visits in 
the Double-Blind Treatment Period for Cohort 2, following dosing at Week 24 and Week 25 
visits in the Open-Label Extension Period for Cohort 2, at the Week 24 visit and following 
transition from 2 mg to 3 mg in the Open-Label Extension Period for subjects in Cohort 1, and 
when a subject re-initiates study drug after a dosing interruption of a specified period 
(Section 6.3.2).
As additional safety measures, subjects with elevated liver enzymes, low lymphocyte counts, 
active severe pulmonary disease or a chronic pulmonary disease requiring intravenous


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 26 of 100
corticosteroid treatment or hospitalization, and active retinopathy or macular edema will be 
excluded from the study.
Further description of identified risks, any potential risks, and the Reference Safety Information 
(RSI) for etrasimod are provided in the current edition of the IB.
2.
OBJECTIVES
Primary Objective

To assess the safety and efficacy of etrasimod monotherapy (2 mg and 3 mg) in 
subjects with moderate-to-severe AA during the Double-Blind Treatment Period
Secondary Objectives

To assess the long-term safety and efficacy of etrasimod monotherapy (2 mg and 
3 mg) in subjects with moderate-to-severe AA

To determine the plasma concentration of etrasimod 2 mg and 3 mg in subjects with 
moderate-to-severe AA
3.
STUDY DESIGN
3.1.
Overall Design
This is a Phase 2, multicenter, randomized, double-blind, placebo-controlled study to assess the 
safety and efficacy of etrasimod 2 mg and 3 mg, once daily for up to 52 weeks in subjects with 
moderate-to-severe AA. The study includes multiple periods: A ≤4-week Screening Period (to 
determine subject eligibility), a 24-week Double-Blind Treatment Period, a 28-week Open-Label 
Extension Period, and a 4-week Safety Follow-Up Period for a maximum total study duration of 
60 weeks.
This study will include approximately 78 subjects with moderate-to-severe AA with current 
episode of hair loss for ≥6 months but < 5 years (current episode must also be relatively stable
during the last 6 months with no significant regrowth). 
Subjects will be separated into 2 cohorts as follows: 
Cohort 1: All subjects (approximately 36 subjects) enrolled under the original protocol, and 
Amendments 0.1, 0.2, 1.0, and 1.1. 
Subjects were randomized in a 2:1 ratio to receive etrasimod 2 mg or placebo orally, once daily. 
Randomization was stratified by SALT I score (< 100, 100) at Day 1/Baseline. Subjects will 
complete the Double-Blind Treatment Period per their original randomization assignment. 
Subjects who have entered the Open-Label Extension Period prior to Amendments 2.0 and 2.1
implementation will transition to 3 mg once daily at their next study visit. Subjects who have not 
entered the Open-Label Extension Period prior to Amendments 2.0 and 2.1 implementation will 
receive etrasimod 2 mg from the Week 24 visit to the Week 25 visit and will transition at the 
Week 25 visit to etrasimod 3 mg orally, once daily for the remainder of the Open-Label 
Extension Period. Of note, subjects already in the Open-Label Extension Period at the time of 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 27 of 100
Amendments 2.0 and 2.1 implementation may be allowed to continue on etrasimod 2 mg at the 
Investigator’s discretion provided that they have achieved a SALT I score ≤20.
Cohort 2: All subjects (approximately 42 subjects) enrolled under protocol Amendments 2.0
and 2.1. 
Subjects will be randomized in a 4:1:2 ratio to receive etrasimod 3 mg, etrasimod 2 mg, or 
placebo orally, once daily, in a double-blind manner for the 24-week Double-Blind Treatment
Period. Randomization will be stratified by SALT I score (< 50, ≥50) at Day 1/Baseline. During 
the Double-Blind Treatment Period, subjects assigned to etrasimod 3 mg will receive etrasimod 
2 mg orally, once daily from Day 1 to the Week 1 visit and will transition at the Week 1 visit to 
etrasimod 3 mg orally, once daily for the remainder of the Double-Blind Treatment Period. 
During the Open-Label Extension Period, all subjects will receive etrasimod 2 mg orally, once 
daily from the Week 24 visit to the Week 25 visit. At the Week 25 visit all subjects will 
transition to 3 mg orally, once daily for the remainder of the Open-Label Extension Period.
Figure 1:
Schematic Diagram of Study Design
a Randomized 2:1 (etrasimod 2 mg:placebo) in the Double-Blind Treatment Period. 
b Subjects entering the Open-Label Extension Period (Week 24 visit) before implementation of Amendments 2.0 and 2.1 will 
transition to 3 mg once daily at their next study visit (refer to Section 10.5.7.5 and Appendix 1 for additional information on 
Holter monitoring). Subjects entering the Open-Label Extension Period (Week 24 visit) after implementation of 
Amendments 2.0 and 2.1 will receive etrasimod 2 mg from the Week 24 visit to the Week 25 visit and will transition to 
etrasimod 3 mg at the Week 25 visit. Of note, subjects already in the Open-Label Extension Period at the time of 
Amendments 2.0 and 2.1 implementation may be allowed to continue on etrasimod 2 mg at the Investigator’s discretion 
provided that they have achieved a SALT I score ≤20.
c SFU 1 and SFU 2 are to be conducted 2 and 4 weeks (± 3 days) after last dose of study drug, respectively.
d Randomized 4:1:2 (etrasimod 3 mg:etrasimod 2 mg:placebo) in the Double-Blind Treatment Period. 
* Subjects will initiate treatment on 2 mg etrasimod for 1 week prior to starting 3 mg.
Note: A visit window of ± 1 day is permitted for the Week 1 and Week 25 visits and ± 3 days for the Week 2, 4, 8, 12, 16, 20, 24, 
28, 36, 44, and 52 visits. Subjects who discontinue treatment prematurely, regardless of the reason, should be instructed to return 
for an ET visit within 1 week of when the last dose of study drug was taken, and to return for the Safety Follow-Up visits 
2 weeks and 4 weeks (± 3 days) after the last dose of study drug.
Note: Refer to Section 6.3.2 for information on re-initiation of treatment after dose interruptions
ET, early termination; N, number (of subjects); SFU, Safety Follow-Up.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 28 of 100
Study visits will take place for Screening; Day 1/Baseline; Weeks 1, 2, 4, 8, 12, 16, 20, 24, 25, 
28, 36, 44, and 52, as applicable (Week 1 is applicable to Cohort 2 only); and 2 weeks and 
4 weeks after the last dose of study drug (for Safety Follow-Up). 
3.2.
Discussion and Scientific Rationale for Study Design
This Phase 2 study will be a randomized, double-blind, placebo-controlled, safety and efficacy 
study that is intended to support the development of etrasimod 2 mg and 3 mg for the treatment 
of moderate-to-severe AA. The subjects will be those with moderate-to-severe AA with current 
episode of hair loss for at least 6 months but less than 5 years (current episode must also be 
relatively stable during the last 6 months with no significant regrowth).
This study will assess etrasimod 2 mg and 3 mg monotherapy compared to placebo during the 
first 24 weeks of treatment. The choice of placebo as a control is appropriate for the objectives of 
this study since it will provide the most robust assessment of the safety and efficacy of 
etrasimod. The 24-week treatment duration was selected to ensure that etrasimod could reach its 
maximal efficacy with respect to hair regeneration while minimizing the time that a subject may 
be on placebo treatment. As this is a placebo-controlled study, the duration is limited. Subjects 
from Cohort 1 who are already in the Open-Label Extension Period at the time of 
Amendments 2.0 and 2.1 implementation may be allowed to continue on etrasimod 2 mg at the 
Investigator’s discretion provided that they have achieved a SALT I score ≤20. All other 
subjects who continue to the Open-Label Extension Period, will receive etrasimod 3 mg once 
daily for a total etrasimod treatment duration of up to 52 weeks. The Open-Label Extension is 
designed to allow subjects to continue etrasimod therapy and to assess long-term safety and 
efficacy of 3 mg once daily dosing as a chronic therapy.
Efficacy will be assessed by percent change in hair loss using a well-validated metric and widely 
utilized tool (SALT I score) at each visit, with a primary endpoint of percent change in SALT I 
score from Baseline to end of the Double-Blind Treatment Period (Week 24).
Additionally, because patient-reported outcomes (PROs) can provide subject perspectives on 
aspects of their disease conditions and overall health status, several PROs will be explored in this 
study. The Alopecia Areata Symptom Impact Scale (AASIS) and Alopecia Areata Quality of 
Life Index (AA-QLI) will be administered every 12 to 16 weeks at study visits.
Exploratory measures will include cytokine and chemokine analysis of serum samples.
Photographs of the full scalp for all subjects and of the eyebrows and eyelashes for subjects who 
have hair loss in these areas at Baseline will also be required to assess changes in hair growth. 
Photographs of the fingernails for subjects with fingernail changes related to AA (eg, pitting, 
white spots, and roughness) at Baseline will also be taken. SALT I assessments of photographs 
will be performed by central review.
3.3.
Rationale for Dose Selection
Taken together, the completed and ongoing Phase 1 studies conducted in healthy volunteers with 
doses up to 4 mg once daily and Phase 2 studies conducted in subjects with ulcerative colitis and 
atopic dermatitis (AD) patients with dosing up to 2 mg daily demonstrate acceptable tolerability 
with no significant safety signal. 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 29 of 100
In the concluded 12-Week Phase 2 Study (Study APD334-201) in subjects with AD, the 
etrasimod 2 mg dose demonstrated clear efficacy across various measures and demonstrated a 
greater effect than the etrasimod 1 mg dose. The overall data suggest potential for a higher 
etrasimod dose to provide a greater clinical benefit to the patient without compromising safety as 
the overall effect size was moderate for the 2 mg dose and had not plateaued at the Week 12 
primary endpoint in the study. Both etrasimod 1 mg and 2 mg doses were well tolerated and 
there were no unanticipated safety signals.
S1P receptor modulators are associated with an expected, on target dose-dependent effect of 
reducing HR upon first dosing with HR recovery to predose baseline thereafter (Camm 2014).
There have been no reported cases of symptomatic bradycardia on first dose and rare first- or 
second-degree AV block found on ECG has been asymptomatic and transient (ie, spontaneous 
resolution) with etrasimod. In Study APD334-003, the mean transient HR decrease did not 
exceed 10 beats per minute (bpm) on Day 1 up to 8 hours after dosing, with the mean nadir of 
HR lowering for 2 mg etrasimod occurring 3 hours after dosing. Therefore, a dose escalation 
regimen is not necessary for doses up to 2 mg. This study includes an etrasimod 3 mg treatment 
group. To attenuate the magnitude of first dose HR reduction with 3 mg etrasimod, subjects 
randomized to the 3 mg etrasimod group will receive 2 mg etrasimod daily for the first week and 
3 mg etrasimod daily for the remainder of the study (refer to Section 1.2 for additional details).
While ulcerative colitis (UC), Crohn’s disease (CD), AD, and AA have similar inflammatory 
mediated origins, there are differences in pathophysiology, disease location, and extent of 
disease that may result in a different optimal dose for the treatment of AA. Therefore, this study
will evaluate the treatment effect of 2 mg and a higher dose of 3 mg. Based on Phase 1 data in 
healthy volunteers, Phase 2 data in UC patients, and Phase 2 data in AD patients, etrasimod 2 mg 
and 3 mg are expected to be safe and well-tolerated in AA patients.
3.4.
End of Study
A subject is considered to have completed the study if he/she has completed all phases of the 
study, including the last study visit (ie, Safety Follow-Up [SFU] 2).
The end of the study is defined as the date of the last study visit of the last subject in the study 
globally.
4.
STUDY POPULATION
4.1.
Inclusion Criteria
Subjects must meet ALL of the following inclusion criteria to be eligible for enrollment into the 
study:
Key inclusion criteria
1. Men or women between ≥18 and ≤70 years of age at the time of informed consent
2. Moderate-to-severe AA as assessed by a SALT I score ≥25 and < 95 at Screening and 
Day 1/Baseline. Severity will also be confirmed by central review of photographs taken 
during Screening


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 30 of 100
3. Current episode of hair loss for ≥6 months but < 5 years
4. Stable disease condition (no significant growth of hair) in the last 6 months as assessed 
by the Investigator
5. Willing to keep the same hair style and color (eg, hair products, process, and timing for
hair appointments) for the duration of the study
General inclusion criteria
6. Willing and able to comply with all clinic visits and study-related procedures and 
understand and complete study-related questionnaires
7. Provide signed informed consent prior to conducting any procedures
8. Females must meet either a or b of the following criteria and males must meet criterion c 
to qualify for the study:
a.
Female who is not of childbearing potential by one of the following:

Postmenopausal, defined as no menses for 12 months without an alternative 
medical cause

Permanent sterilization procedure, such as hysterectomy, bilateral salpingectomy, 
or bilateral oophorectomy
b. Nonpregnant female of childbearing potential and agrees to using a highly effective 
contraception method during treatment and for 30 days following treatment that can 
achieve a failure rate of less than 1% per year when used consistently and correctly. 
The following are considered highly effective birth control methods:

Combined (estrogen and progestogen containing) hormonal contraception 
associated with inhibition of ovulation, which may be oral, intravaginal, or 
transdermal

Progestogen-only hormonal contraception associated with inhibition of ovulation, 
which may be oral, injected, or implanted

Intrauterine device (IUD)

Intrauterine hormone-releasing system

Bilateral tubal occlusion

Vasectomized partner, provided that partner is the sole sexual partner of the 
female of childbearing potential study participant and that the vasectomized 
partner has received medical assessment of the surgical success

Sexual abstinence (complete sexual abstinence defined as refraining from 
heterosexual intercourse for the entire period of risk associated with study drug). 
The reliability of sexual abstinence needs to be evaluated in relation to the 
duration of the clinical study and the preferred and usual lifestyle of the subject. 
Periodic abstinence (eg, calendar, symptothermal, post-ovulation methods) is not 
acceptable.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 31 of 100
c.
Male with a pregnant or nonpregnant female of childbearing potential partner and
agrees to using condoms during treatment and for 30 days following treatment
4.2.
Exclusion Criteria
Subjects will be excluded from the study if they meet ANY of the following exclusion criteria:
Key exclusionary criteria
1. History of male or female pattern hair loss > Hamilton stage III or > Ludwig stage II
2. Other types of alopecia (eg, cicatricial/scarring alopecia [including central centrifugal 
cicatricial alopecia], traction alopecia, or telogen effluvium) or other diseases that could 
cause hair loss
3. Active scalp inflammation, scalp infection, scalp psoriasis, or any other scalp condition 
that may interfere with the SALT I assessment
4. Previous use of a Janus kinase (JAK) inhibitor (oral or topical), including participation in 
clinical studies of JAK inhibitors 
Exclusionary criteria related to medications, therapies, or skin disease
5. Phototherapy on scalp within 4 weeks of Screening
6. Treatment with the following medications within 12 weeks of Screening:
a.
Intralesional or systemic corticosteroids
b. Systemic glucocorticoids (inhaled or intranasal delivery are not exclusionary)
c.
Immunoglobulin or blood products
7. Use of any biological agents (eg, dupilumab, adalimumab, ustekinumab, secukinumab) 
regardless of indication or systemic immunosuppressive/immunomodulating drugs (eg, 
cyclosporine, azathioprine, methotrexate) within 5 half-lives (if known) or 12 weeks 
before Screening, whichever is longer
8. Treatment with the following medications within 4 weeks of Screening:
a.
Topical corticosteroids
b. Topical immunotherapy (eg, diphenylcyclopropenone, squaric acid)
c.
Topical calcineurin inhibitors
d. Topical or oral minoxidil
9. Use of S1P receptor modulators (eg, fingolimod, siponimod, ozanimod, ponesimod), 
α4β1-integrin receptor antagonists (eg, natalizumab), and lymphocyte-depleting therapies 
(eg, rituximab, cyclophosphamide, bone marrow transplantation, total body irradiation) 
within 6 months before Screening or until lymphocyte count returns to normal, whichever 
is longer
10. History of or planned hair transplant procedure during the study
11. Planned microblading or micropigmentation of the scalp during the study
12. Received any investigational agent, including non-biologic agents and topical agents, 
within 5 half-lives (if known) or 4 weeks (whichever is longer) before Screening


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 32 of 100
13. Use of moderate/strong inducers or inhibitors that inhibit or induce at least two of the 
following: Cytochrome P450 (CYP) 2C8, CYP2C9, and CYP3A4 (eg, fluconazole, 
enzalutamide; Table 4) within 4 weeks before Screening. 
Exclusionary criteria related to medical history
14. Known active bacterial, viral, fungal, mycobacterial infection, or other infection 
(including tuberculosis [TB] or atypical mycobacterial disease) or any major episode of 
infection that required hospitalization or treatment with intravenous antibiotics within 
4 weeks before Screening or during Screening, or oral antibiotics within 2 weeks before 
Screening or during Screening. Superficial fungal infection of the nail bed is allowed
15. Have any of the following conditions or risk factors:
a.
Primary or secondary immunodeficiency syndromes (eg, hereditary 
immunodeficiency syndrome, acquired immunodeficiency syndrome, drug-induced 
immune deficiency)
b. History of organ transplant (except corneal transplant)
c.
History of an opportunistic infection (eg, Pneumocystis jirovecii pneumonia, 
cryptococcal meningitis, progressive multifocal leukoencephalopathy [PML])
d. History of disseminated herpes simplex or disseminated herpes zoster, or any episode 
of herpes zoster
e.
Test positive for human immunodeficiency virus (HIV), hepatitis B virus (positive for 
hepatitis B surface antigen [HBsAg]), or active hepatitis C virus (HCV) (positive 
HCV antibody with detectable viral load) at Screening
f.
History of active or latent TB (refer to Appendix 3 for details of TB screening and 
interpretation of test results). The following is the EXCEPTION to the exclusion 
criterion: 

Subjects with treated latent TB or latent TB diagnosed at Screening who have 
received ≥2 weeks of TB prophylaxis treatment prior to randomization, ruled out 
for active TB, and have not had recent close contact with a person with active 
TB. It is the responsibility of the Investigator to verify the adequacy of TB 
prophylaxis treatment and provide appropriate documentation. Note: The 
exception to the exclusion criterion outlined above does NOT apply to subjects 
residing in countries identified by the WHO as a high multi-drug resistance 
(MDR) TB burden country due to the risk of latent infection with MDR TB.
16. Received any live or live-attenuated vaccines within 4 weeks before Screening
(Section 6.9 offers additional details regarding vaccines)
17. History of malignancy of any organ system (other than localized squamous cell or basal 
cell carcinoma of the skin that have been excised or resolved), treated or untreated, within 
the past 5 years
18. Have any of the following conditions or receiving treatments that may affect 
cardiovascular function:
a.
Myocardial infarction, unstable angina, stroke/transient ischemic attack, 
decompensated heart failure requiring hospitalization or Class III/IV heart failure 
within 8 weeks before Screening


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 33 of 100
b. History or presence of second-degree or third-degree AV block, sick sinus syndrome, 
or periods of asystole for > 3 seconds without a functional pacemaker
c.
Recurrent symptomatic bradycardia or recurrent cardiogenic syncope
d. Screening OR Baseline (Day 1) pre-randomization vital signs (taken in the sitting 
position) with an HR < 50 bpm, systolic blood pressure (BP) < 90 mm Hg, OR 
diastolic BP < 55 mm Hg. Vital signs may be repeated up to 3 times during a visit to 
confirm abnormal readings
e.
Screening OR Baseline (Day 1) pre-randomization ECG with PR interval ≥200 ms or 
QT interval corrected using Fridericia’s formula (QTcF) ≥450 ms in males or 
≥470 ms in females
f.
Start, stop, or change dosage of Class I-IV anti-arrhythmic drugs within 1 week of 
Screening
19. A history of or active diabetic retinopathy, uveitis, retinitis pigmentosum, or macular 
edema. Any recent intraocular surgery within 1 year of Screening
20. Active severe pulmonary disease (eg, chronic obstructive pulmonary disease or
pulmonary fibrosis) or chronic pulmonary disease requiring intravenous corticosteroid 
treatment or hospitalization within 12 months before Screening or during the Screening 
Period
21. Have forced expiratory volume at 1 second (FEV1) or forced vital capacity (FVC) < 70% 
of predicted values at Screening
22. Have any uncontrolled systemic disease(s) (eg, thyroid disorder, hypertension, diabetes). 
If the condition is considered controlled and the subject is on any medications (eg, 
thyroid medication or hormonal therapy) for treatment of diseases, the subject may be 
allowed to participate but must have been on a stable dose for at least 6 months prior to 
Screening and remain on a stable dose throughout the study.
Exclusionary criteria related to test or laboratory results (performed by central laboratory)
Note: A confirmed result means there have been 2 consecutive assessments showing a consistent 
abnormal, clinically relevant result.
23. Confirmed total white blood cell (WBC) count ≤3.5 × 109 cells/L OR absolute neutrophil 
count (ANC) ≤1.5 × 109 cells/L OR ALC < 1.0 × 109 cells/L at Screening
24. Confirmed estimated glomerular filtration rate < 30 mL/min/1.73 m2 by the Chronic 
Kidney Disease Epidemiology Collaboration equation at Screening
25. Confirmed aspartate aminotransferase (AST) or alanine aminotransferase (ALT)
> 2 × upper limit of normal (ULN) and total bilirubin > 1.5 × ULN (unless consistent 
with a history of Gilbert’s Syndrome) at Screening
General exclusionary criteria
26. Lactating female who is breastfeeding
27. Any acute illness or medical condition including psychiatric disease, cognitive 
impairment, and alcohol/drug abuse/dependence, or signs/symptoms suspicious for a 
serious disease that, in the Investigator’s opinion, could put the subject at increased risk 
for safety event(s), could interfere with participation in the study according to the study 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 34 of 100
protocol, or with the ability of the subject to cooperate and comply with the study 
procedures
Note: If a subject fails ≥1 Screening laboratory (or other) assessment criteria, the assessment(s) 
may be repeated once at the discretion of the Investigator, and the subject may be randomized if 
criteria are then met, provided the assessments are completed within the Screening Period. Any 
rescreening laboratory assessments beyond 1 time will need to be discussed with the Medical 
Monitor before proceeding.
4.3.
Exclusion Criteria (for the Open-Label Extension Period)
Subjects will be excluded from the Open-Label Extension Period if they meet the following 
exclusion criteria at the Week 24 visit:
1. Week 24 predose vital signs (taken in the sitting position) with an HR < 50 bpm, systolic 
BP < 90 mm Hg, OR diastolic BP < 55 mm Hg. Vital signs may be repeated up to 3 times 
during the visit to confirm abnormal readings.
2. Confirmed predose Week 24 ECG with PR interval ≥200 ms or QT interval corrected 
using QTcF ≥450 ms in males or ≥470 ms in females. Presence on Week 24 ECG of 
second-degree or third-degree AV block, sick sinus syndrome, or periods of asystole for 
> 3 seconds without a functional pacemaker.
3. The Investigator considers the subject to be unsuitable for any reason to participate in the 
Open-Label Extension study. 
Note: If a subject fails to enter the Open-Label Extension Period due to Exclusion Criterion 1 or 
2, the assessment may be repeated once at the discretion of the Investigator, and the subject may 
be dosed if the criterion is then met, provided the assessment is completed within the Week 24 
visit window. Any repeated vital sign assessments beyond 1 time will need to be discussed with 
the Medical Monitor before proceeding.
5.
SUBJECT RESTRICTIONS
For dosing requirements, including holding the dose prior to the study visit on study visit days, 
refer to Dosage and Administration, Section 6.3. Prohibited medications/procedures are located 
in Section 6.8.2.
Subjects are expected to continue their usual scalp care routine without notable changes for the 
course of the treatment periods and follow-up period. Subjects are prohibited from using tanning 
booths and sunbathing, and from shaving their scalp 2 weeks prior to visits.
Subjects are to keep the same hair style and color for the duration of the study.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 35 of 100
6.
STUDY DRUG
6.1.
Study Drug(s) Administered
Study drug(s) in this study include the investigational medicinal product(s), defined as a 
pharmaceutical form of the active substance being tested (test product) and the placebo being 
used as a reference (reference therapy). Study drug(s) are listed in Table 1.
Table 1:
Study Drugs
Study Drug
Dose
Mode of 
Administration
Frequency
Formulation
Etrasimod
2 mg
Oral
Once daily
Tablet
Etrasimod
3 mg
Oral
Once daily
Tablet
Placebo
Not applicable
Oral
Once daily
Tablet
6.2.
Identity of Study Drugs
6.2.1.
Etrasimod
The active pharmaceutical ingredient in etrasimod tablets is APD334 L-arginine (the L-arginine 
salt of (R)-2-(7-(4-cyclopentyl-3-(trifluoromethyl)benzyloxy)-1,2,3,4-tetrahydrocyclopenta[b]-
indol-3-yl)acetic acid), which is an off-white to light-brown solid with an aqueous solubility of 
approximately 1.38 mg/mL at pH = 8.9 and 30°C. APD334 L-arginine is manufactured, 
packaged, tested, and released in compliance with cGMP.
Etrasimod tablet drug product is a blue, round, biconvex, plain, immediate-release, film-coated 
tablet. Etrasimod tablets are composed of APD334 L-arginine active pharmaceutical ingredient 
and excipients (microcrystalline cellulose, mannitol, sodium starch glycolate, magnesium 
stearate, and Opadry®II blue 85F90951) and is supplied in the dosage strength (based on 
etrasimod free-acid content) of 1 mg and 2 mg.
6.2.2.
Placebo
The placebo tablet is a blue, round, biconvex, plain, film-coated tablet. The placebo tablet 
formulation is composed of excipients (microcrystalline cellulose, mannitol, sodium starch 
glycolate, magnesium stearate, and Opadry® II blue 85F90951). The placebo drug product is 
manufactured, packaged, tested, and released in compliance with cGMP.
6.3.
Dosage and Administration
Subjects will self-administer study drug, except on study visit days, from Day 1 until the day 
prior to the Week 52 visit. Tablets (etrasimod 1 mg, etrasimod 2 mg, or placebo) are to be taken 
once daily with water (either with or without food) at approximately the same time each day, 
preferably in the morning according to the schedule described in Table 2 (Cohort 1) and Table 3
(Cohort 2).


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 36 of 100
Table 2:
Study Drug Dosage and Administration for Cohort 1
Randomization 
Assignmenta
Double-Blind Treatment Period
Open-Label Extension Period
Day 1 to
Week 24 Visitb
Week 24 Visit to
Week 25 Visit
Week 25 Visit to
Week 52 Visitc,d,e
Placebo
1 × placebo
1 × 2 mg
1 × 2 mg + 1 × 1 mg 
or 1 × 2 mgf
2 mg etrasimod
1 × 2 mg
1 × 2 mg
1 ×2 mg + 1 × 1 mg or 
1 × 2 mgf
a Randomization assignment refers to treatment assignment in the Double-Blind Treatment Period.
b No double-blind treatment is to be administered at the Week 24 visit. Treatment in the Open-Label Extension Period will start 
at Week 24 after all assessments of the Double-Blind Period are completed.
c Subjects entering the Open-Label Extension Period (Week 24 visit) before implementation of Amendments 2.0 and 2.1 will 
transition to 3 mg once daily at their next study visit. Subjects entering the Open-Label Extension Period (Week 24 visit) after 
implementation of Amendments 2.0 and 2.1 will receive etrasimod 2 mg from the Week 24 visit to the Week 25 visit and will 
transition to etrasimod 3 mg at the Week 25 visit.
d No treatment is to be administered at the Week 52 visit.
e In case of study drug interruption of etrasimod 3 mg, treatment will be re-initiated by starting with etrasimod 2 mg for 1 week 
before transitioning to etrasimod 3 mg. Holter monitoring, as described in Section 10.5.7.5, must be performed any time a 
subject transitions from 2 mg to 3 mg etrasimod.
f Subjects already in the Open-Label Extension Period at the time of Amendments 2.0 and 2.1 implementation may be allowed to 
continue on etrasimod 2 mg at the Investigator’s discretion provided that they have achieved a SALT I score ≤20.
SALT I, Severity of Alopecia Tool I
Table 3:
Study Drug Dosage and Administration for Cohort 2
Randomization 
Assignmenta
Double-Blind Treatment Period
Open-Label Extension Period
Day 1 to
Week 1 Visit
Week 1 Visit to
Week 24 Visitb,c
Week 24 Visit to
Week 25 Visit
Week 25 Visit to
Week 52 Visitc,d
Placebo
2 × placebo
2 × placebo
1 × 2 mg
1 × 2 mg + 1 × 1 mg
2 mg etrasimod
1 × 2 mg + 1 × placebo 1 × 2 mg + 1 × placebo
1 × 2 mg
1 × 2 mg + 1 × 1 mg
3 mg etrasimod
1 × 2 mg + 1 × placebo
1 × 2 mg + 1 × 1 mg
1 × 2 mg
1 × 2 mg + 1 × 1 mg
a Randomization assignment refers to treatment assignment in the Double-Blind Treatment Period.
b No double-blind treatment is to be administered at the Week 24 visit. Treatment in the Open-Label Extension Period will start 
at Week 24 after all assessments of the Double-Blind Period are completed.
c In case of study drug interruption of etrasimod 3 mg, treatment will be re-initiated by starting with etrasimod 2 mg for 1 week 
before transitioning to etrasimod 3 mg. Holter monitoring, as described in Section 10.5.7.5, must be performed any time a 
subject transitions from 2 mg to 3 mg etrasimod.
d No treatment is to be administered at the Week 52 visit.
SALT I, Severity of Alopecia Tool I
On study visit days when study drug is to be administered at the clinic (Schedules of 
Assessments, Appendix 1 and Appendix 2), subjects should be instructed not to take their dose 
until after their study visit assessments have been completed. On study visit days when plasma 
samples for pharmacokinetics (PK) are being collected, subjects should wait to take their 
assigned dose at the study site after predose blood samples for PK have been drawn and after all 
predose assessments and procedures have been completed. Subjects should be instructed to 
document the time of their last dose prior to the study visit and the time must be recorded in the 
electronic case report form (eCRF). The time of plasma sample collection and subsequent dosing 
should also be documented.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 37 of 100
6.3.1.
Instructions for Missed Dose(s)
Subjects should be instructed that if they forget to take a dose, they can take the dose within 
8 hours of the normal dosing time; otherwise, they should take their next dose at the regular time 
on the following day. If the subject vomits the tablet(s), he/she should be instructed not to take 
additional tablet(s) on the same day but to take the next dose at the regular time on the following 
day. 
Subjects should be instructed to contact the Investigator if they miss 2 or more consecutive 
doses. The Investigator is to refer to Section 6.3.2 for guidance regarding dose interruptions.
6.3.2.
Dose Interruptions
If the Investigator deems it necessary to withhold study drug, temporary withholding is permitted 
for up to 3 days without obtaining prior approval from the Medical Monitor or Sponsor. If study 
drug interruption ≥7 days is required for a medical reason, the Investigator must contact the 
Medical Monitor as soon as this is anticipated.
The procedure for first-dose cardiac monitoring as outlined in Section 10.5.7.4 should be 
performed and discussed with the Medical Monitor any time a subject misses study drug dosing
as follows:

≥2 consecutive days within the first week of study drug during the Double-Blind 
Treatment Period and within the first week of study drug during the Open-Label 
Extension Period

≥7 consecutive days after the first week of study drug during the Double-Blind 
Treatment Period and after the first week of study drug during the Open-Label 
Extension Period
If these doses of study drug are missed, subjects must contact the Investigator to discuss 
treatment re-initiation and are required to return to the study site before taking their next dose of 
study drug. The subject must take the next dose of study drug at the study site, and the in-clinic 
cardiac monitoring as outlined in Section 10.5.7.4 should be performed.
Subjects assigned to 3 mg dosing will re-initiate treatment with 2 mg once daily for 1 week prior 
to transitioning to 3 mg. In order to maintain the study drug blind, after interruptions of study 
drug for the time periods defined above, all subjects must also return to an in-clinic visit the 
following week after re-initiating treatment and will receive a new kit dispensed. Holter 
monitoring is required any time a subject escalates from 2 mg to 3 mg etrasimod.
6.4.
Method of Assigning Subjects to Treatment
For the Double-Blind Treatment Period, eligible subjects in Cohort 1 were centrally assigned to 
randomized study drug (2 mg etrasimod or placebo [2:1]) using an Interactive Web Response 
System (IWRS) and stratified by SALT I score (< 100, 100) at Day 1/Baseline. Eligible subjects 
in Cohort 2 will be centrally assigned to randomized study drug (etrasimod 3 mg, etrasimod 
2 mg, or placebo [4:1:2]) using an IWRS and stratified by SALT I score (< 50, ≥50) at 
Day 1/Baseline.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 38 of 100
During the Open-Label Extension Period, all eligible subjects in Cohort 1 will transition to 
etrasimod 3 mg as described in Section 3.1 and all eligible subjects in Cohort 2 will receive 
etrasimod 3 mg (no randomization).
6.5.
Selection and Timing of Dose for Each Subject
Refer to Section 6.3 for information regarding the selection and timing of dose for each subject.
6.6.
Blinding
This study includes a Double-Blind Treatment Period with limited access to the randomization 
codes. The investigational drug and placebo tablets, bottles, and kits are identical in physical 
appearance. The treatment each subject receives will not be disclosed to the Investigator, study 
site staff, subject, Sponsor personnel involved with the conduct of the study (except for the 
clinical supply staff and designated safety staff), or study vendors. The IWRS will hold treatment 
codes, bottle, and kit numbers for study drug.
The IWRS will be programmed with blind-breaking instructions. In case of an emergency, the 
Investigator has the sole responsibility for determining if unblinding of a subject’s treatment 
assignment is warranted based upon medical necessity.
Subject safety must always be the first consideration in making such a determination. If the 
Investigator decides that unblinding is warranted, the Investigator should make every effort to 
contact the Medical Monitor prior to unblinding a subject’s treatment assignment unless this 
could delay emergency treatment of the subject. If a subject’s treatment assignment is unblinded, 
the Sponsor must be notified within 24 hours after breaking the blind. The date and reason the 
blind was broken must be recorded in the source documentation and eCRF, as applicable.
S1P receptor modulators such as etrasimod are associated with an expected, on-target 
dose-dependent effect of reducing HR upon first dosing due to S1P1 agonism and subsequent 
activation of G protein-coupled inwardly rectifying potassium channels that regulate HR (Camm 
2014). Therefore, study staff, including investigators and study coordinators, should not disclose 
HR data to study subjects after treatment initiation during the cardiac monitoring period. If there 
are adverse events (AEs) associated with changes in HR during the treatment period, then 
investigators may discuss the relevant measurement with subjects, as needed, for appropriate AE 
inquiry and/or management. Trends in HR changes should not be discussed among study staff 
unless this is required to provide appropriate medical care to study subjects. Additionally, site 
staff including Investigators will be blinded to laboratory results as defined in Section 10.5.7.2, 
during the Double-Blind Treatment Period.
Additionally, site staff including Investigators will be blinded to the following laboratory results 
during the Double-Blind Treatment Period: WBC count and differential (percentage and absolute 
number), and lymphocyte subsets, except as described in Section 10.5.7.2. During the time when 
the Investigator is blinded to these results, they will be monitored by an Independent Medical 
Monitor (IMM; not providing direct medical oversight of study conduct), who will provide 
instructions to the site Investigator when actions are required as specified by the study protocol
(Section 10.5.7.2).
During the Open-Label Extension Period, a subject’s previous treatment from the Double-Blind 
Treatment Period will remain blinded until the unblinding of data from that treatment period.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 39 of 100
For Suspected, Unexpected, Serious Adverse Reactions, the Sponsor’s Pharmacovigilance 
designee responsible for managing serious adverse events (SAEs) will access the IWRS to obtain 
the subject’s treatment assignment for the purpose of regulatory reporting.
6.7.
Treatment Compliance
The Investigator is responsible for ensuring that subjects are correctly instructed on how to take 
the study drug and that each subject is fully compliant with the assigned regimen. The study drug 
should be dispensed by the Investigator, or by a qualified individual under the Investigator’s 
supervision. An up-to-date treatment inventory/dispensing record must be maintained as 
described in Section 7.4.
Subject compliance will be based on tablet count per bottle. Lack of subject compliance should 
be evaluated by the Investigator regarding whether the subject should continue in the study or be 
discontinued from study drug.
6.8.
Concomitant Therapy
6.8.1.
Allowed Concomitant Therapy
There are no permitted medications for the treatment of AA for this study. Concomitant 
medications for medical conditions other than AA are permitted as clinically indicated, subject to 
specific protocol requirements outlined in Section 4.1 and Section 4.2. Any permitted 
medications also need to be approved in the country where it will be administered.
All medications (over the counter and prescribed) that are taken by subjects and all procedures 
that are performed during the Screening Period through the safety reporting period must be 
recorded in the eCRF along with:

Reason for use

Dates of administration, including start and end dates

Dosage information, including dose and frequency
The Medical Monitor should be contacted if there are any questions regarding concomitant 
therapy.
6.8.2.
Prohibited Concomitant Therapy and Procedures
The following therapies are prohibited during the study:

Topical, intralesional, or systemic corticosteroids

Topical calcineurin inhibitors

Topical or oral minoxidil

Topical immunotherapy (eg, diphenylcyclopropenone, squaric acid)

S1P receptor modulators (eg, fingolimod, siponimod, ozanimod, ponesimod), α4β1 
integrin receptor antagonists (eg, natalizumab)

Phototherapy on scalp


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 40 of 100

Any biological agents (eg, dupilumab, adalimumab, ustekinumab, secukinumab) 
regardless of indication

Any investigational agent other than the study drug, including non-biologic agents 
and topical agents

Moderate/strong inducers or inhibitors that inhibit or inducer at least two of the 
following: Cytochrome P450 (CYP) 2C8, CYP2C9, and CYP3A4 (eg, fluconazole, 
enzalutamide; Table 4 for additional information refer to US FDA Drug development 
and drug interactions: Table of substrates, inhibitors and inducers (Flockhart 2019))
Table 4:
Examples of Cytochrome P450 Inhibitors and Inducers
Cytochrome P450
Inhibitors (Strong/Moderate)
Inducers (Strong/Moderate)
CYP2C8
Clopidogrel, gemfibrozil, deferasirox, 
teriflunomide
Rifampin
CYP2C9
Fluconazole, amiodarone, felbamate, 
miconazole, piperine
Aprepitant, carbamazepine, enzalutamide, 
rifampin, ritonavir
CYP3A4
Boceprevir, cobicistat, danoprevir and 
ritonavir, elvitegravir and ritonavir, 
grapefruit juice, indinavir and ritonavir,
itraconazole, ketoconazole, lopinavir and 
ritonavir, paritaprevir and ritonavir and 
(ombitasvir and/or dasabuvir), 
posaconazole, ritonavir, saquinavir and 
ritonavir, telaprevir, tipranavir and ritonavir, 
telithromycin, troleandomycin, 
voriconazole, aprepitant, ciprofloxacin, 
conivaptan, crizotinib, cyclosporine, 
diltiazem, dronedarone, erythromycin, 
fluconazole, fluvoxamine, imatinib, 
tofisopam, verapamil, clarithromycin,
idelalisib, nefazodone, nelfinavir
Rifampin, apalutamide, carbamazepine, 
enzalutamide, mitotane, phenytoin, 
St. John’s wort, bosentan, efavirenz, 
etravirine, phenobarbital, primidone
CYP, cytochrome P450

Moderate/strong inhibitors or inducers of uridine diphosphate (UDP) 
glucuronosyltransferase (UGT) family 1 member A7 (UGT1A7)
In addition to being prohibited during the study, initiation of any of the following therapies will 
result in mandatory discontinuation from study drug:

Topical JAK inhibitors

Systemic glucocorticoids (excludes inhaled or intranasal delivery that are considered 
topical for any reason)

Immunoglobulin or blood products

Systemic immunosuppressive/immunomodulating drugs (eg, cyclosporine, 
azathioprine, methotrexate), including oral JAK inhibitors

All live or live-attenuated vaccines

Any cell-depleting agents, including but not limited to rituximab


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 41 of 100

Hair transplant, microblading, or micropigmentation of the scalp
For concomitant procedures:

Subjects should not undergo major elective surgery while on study drug

Subjects may not donate blood during the study and for 30 days after the last dose of 
study drug

Subjects may not donate sperm, or oocytes during the study and for 30 days after the 
last dose of study drug
6.9.
Vaccinations
At this time, there are no data on the effect of etrasimod on vaccination, including severe acute 
respiratory syndrome coronavirus 2 (SARS-CoV-2) coronavirus disease 2019 (COVID-19) 
vaccines. The American Academy of Dermatology (AAD) has published recommendations that 
advise patients on immunomodulating drugs to be vaccinated as “The CDC does not consider 
COVID-19 vaccine to be contraindicated in persons taking biologic or traditional 
immunosuppressive medications, hedgehog pathway inhibitors, and PD1 inhibitors” (AAD 
2021).
If a subject receives a vaccination, the vaccination date and type (eg, SARS-CoV-2) should be 
captured as described in Section 6.8 in the Concomitant Medication log/eCRF. The vaccine 
brand, manufacturer, and lot number (if available) should be captured in the source 
documentation.
7.
STUDY DRUG MATERIALS MANAGEMENT
7.1.
Packaging and Labeling
Tablets are packaged in induction-sealed, high-density polyethylene bottles with child-resistant 
screw caps and desiccant canisters. Each bottle and kit will be labeled as required per country 
requirements.
Cohort 1: During the Double-Blind Treatment Period, subjects will be dispensed blinded
etrasimod 2 mg or matching placebo bottles. During the Open-Label Extension Period, subjects 
will be dispensed open-label etrasimod 2 mg bottles for etrasimod 2 mg treatment and etrasimod 
3 mg kits for etrasimod 3 mg treatment. Each etrasimod 3 mg kit will contain one etrasimod 
2 mg bottle and one etrasimod 1 mg bottle, total of two bottles inside.
Cohort 2: During the Double-Blind Treatment Period, subjects will be dispensed blinded 
treatment kits, each kit will contain two blinded bottles. Placebo kit will contain two placebo 
bottles; etrasimod 2 mg kit will contain two bottles, consisting of one etrasimod 2 mg bottle and 
one placebo bottle; etrasimod 3 mg kit will contain two etrasimod bottles, consisting of one 
etrasimod 2 mg and one etrasimod 1 mg bottle. During the Open-Label Extension Period, 
subjects will be dispensed open-label etrasimod 2 mg bottles for etrasimod 2 mg treatment and 
etrasimod 3 mg kits for etrasimod 3 mg treatment. Each 3 mg kit will contain one etrasimod 
2 mg bottle and one etrasimod 1 mg bottle, total of two bottles inside.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 42 of 100
7.2.
Storage and Handling
Bottles and kits should be stored between 15°C to 25°C (59°F to 77°F).
7.3.
Preparation
No preparation by study site personnel is required.
7.4.
Accountability
At specified study visits, previously dispensed study drug tablets (bottles or kits, as applicable)
will be collected by the Investigator or qualified staff to assess subject compliance (Appendix 1
and Appendix 2).
The Investigator must maintain adequate records documenting the receipt, use, loss, or other 
disposition of study drug tablets. To ensure adequate records, all drug supplies will be accounted 
for in the drug accountability inventory forms and will be monitored by counting of unused study 
drug tablets.
7.5.
Retention and Disposal
All study drug will be reconciled by the study monitor and used and unused study drug will be 
returned or destroyed according to applicable country regulations. On-site destruction following 
all local regulations and in accordance with applicable site standard operating procedures (SOPs) 
is permitted. Prior to any action being taken with study drug, the Investigator will contact the 
Sponsor (or contract research organization [CRO]) for approval of such action. Final 
reconciliation will be performed at study completion.
8.
REMOVAL OF SUBJECTS FROM THERAPY OR ASSESSMENT
8.1.
Discontinuation of Study Drug
Study drug must be discontinued in the following instances:

Unacceptable AE or AE that, in the judgment of the Investigator, is considered to not 
be in the best interest of the subject to continue study drug

Subject request to discontinue for any reason

Pregnancy during the study (Section 10.5.9)

Termination of the study by the Sponsor or at the request of a regulatory agency or an 
Institutional Review Board (IRB) or Independent Ethics Committee (IEC)

Lost to follow-up

Criteria met from cardiac HR monitoring to discontinue study drug (Section 10.5.7.4)

Confirmed lymphocyte measurement < 0.2 × 109 cells/L (Section 10.5.7.2)

Received a prohibited concomitant medication that required discontinuation of study 
drug (Section 6.8.2)


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 43 of 100

Other
Study drug may be discontinued in the following instances:

Subject noncompliance

Protocol deviation

Drug-induced liver injury (Section 10.5.7.1)
Subjects who discontinue treatment prematurely, regardless of the reason, should be instructed to 
return for an ET visit within 1 week of when the last dose of study drug was taken, and for
Safety Follow-Up Visits 2 weeks and 4 weeks after the last dose of study drug (ie, SFU 1 and 
SFU 2) (Appendix 1 and Appendix 2). If a subject fails to attend the follow-up visits, all 
reasonable efforts will be made to contact the subject to ensure that he/she is in satisfactory 
health. All contacts and contact attempts must be documented in the subject’s medical record.
Whenever possible, subjects should continue on study and complete the remaining study visits 
and assessments even when study drug has been discontinued.
8.2.
Discontinuation from the Study
Subjects may discontinue from the study at any time for any of the following reasons:

AE

Death

Pregnancy during the study (Section 10.5.9)

Protocol deviation

Physician decision

Withdrawal by subject

Lost to follow-up

Termination of the study by the Sponsor or at the request of a regulatory agency or an 
IRB or IEC

Other
A subject may elect to discontinue study participation at any time for any reason without 
prejudice to their future medical care by the physician or at the institution. If a subject withdraws 
consent, no further evaluation should be performed, and no additional data should be collected. 
The Sponsor may retain and continue to use any data collected before such withdrawal of 
consent. The Investigator should make a reasonable attempt to document the specific reason why 
consent was withdrawn. Additional subjects may be randomized at the discretion of the Sponsor 
to replace subjects who discontinue from the study.
8.3.
Lost to Follow-Up
A subject will be considered lost to follow-up if the subject repeatedly fails to return for 
scheduled visits and cannot be contacted by the study site.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 44 of 100
The following actions must be taken if a subject fails to return to the clinic for a required study 
visit:

The site must attempt to contact the subject and reschedule the missed visit as soon as 
possible, counsel the subject on the importance of maintaining the assigned visit 
schedule, and ascertain whether or not the subject wishes to and/or should continue in 
the study.

Before a subject is deemed lost to follow-up, the Investigator or designee must make 
every effort to regain contact with the subject (this would include telephone calls and 
if necessary, a certified letter to the subject’s last known mailing address or local 
equivalent methods). These contact attempts should be documented in the subject’s 
medical record.
Should the subject continue to be unreachable, he/she will be considered to have withdrawn from 
the study.
8.4.
Premature Termination of the Study or a Study Site
The Sponsor has the right to terminate this study at any time. Reasons for terminating the study 
may include, but are not limited to, the following:

The incidence or severity of AEs in this or other studies indicates a potential health 
hazard to subjects

Subject enrollment is unsatisfactory

Upon request of Health Authorities
The Sponsor will notify the Investigator if the study is placed on hold or if the Sponsor decides 
to discontinue the study. Health authorities and IECs/IRBs will be informed about the 
termination of the study in accordance with applicable regulations.
The Sponsor has the right to replace a study site at any time. Reasons for replacing a study site 
may include, but are not limited to:

Excessively slow recruitment

Poor protocol adherence

Inaccurate or incomplete data recording

Non-compliance with ICH guidelines for GCP
9.
STUDY PERIODS
9.1.
Screening and Eligibility
Subjects must sign the informed consent before any study-specific procedure can be performed 
(Section 10.1). The Screening Period will last up to 4 weeks. A summary of Screening and 
enrollment events is provided in the Schedules of Assessments (Appendix 1 and Appendix 2).


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 45 of 100
Inclusion and exclusion criteria are listed in Section 4.1 and Section 4.2, respectively. Subjects 
who have met all inclusion/exclusion criteria requirements may be randomized into the study.
Screening procedures must be completed within 28 days prior to Day 1. The Medical Monitor 
should be consulted to see whether repeated testing is needed if the subject is planned to be 
randomized > 28 days from the signing of the informed consent form (ICF). Rescreening
procedures are described in Section 10.2.1.
Subjects with a Screening Visit 12-lead ECG showing a second- or third-degree AV block, sick 
sinus syndrome without a functional pacemaker, periods of asystole > 3 seconds without an 
implanted cardiac pacemaker, PR interval ≥200 ms, or QTcF ≥450 ms (men) or QTcF ≥470 ms 
(women) are not eligible for rescreening.
Eligibility for the Open-Label Extension Period will be assessed at the Week 24 visit and is 
defined in Section 4.3.
9.2.
Randomization and Double-Blind Treatment Period
Subjects enrolled with this version of the protocol (Amendments 2.0 and 2.1) who complete all 
Screening requirements and remain eligible for the study will be randomized in a 4:1:2 ratio to 
receive etrasimod 3 mg, etrasimod 2 mg, or placebo orally once daily for 24 weeks in the 
Double-Blind Treatment Period. Subjects will self-administer study drug, except on study visit 
days, as described in Section 6.3. Study visits and assessments will be conducted according to 
the Schedule of Assessments (Appendix 2).
9.2.1.
Day 1 Pre-Randomization
At the Day 1 visit, prior to randomization, inclusion and exclusion criteria must be evaluated 
again. To this end, vital signs including HR and BP must be measured first, followed by 12-lead 
ECG. Vital signs may be repeated up to 3 times to confirm abnormal readings.
Subjects with the following must not be randomized and should be considered screen failures:

Sitting vital sign assessment: HR < 50 bpm, systolic BP < 90 mm Hg, OR diastolic 
BP < 55 mm Hg

12-lead ECG showing a second- or third-degree AV block, periods of asystole 
> 3 seconds, PR interval ≥200 ms, or QTcF ≥450 ms (males) or QTcF ≥470 ms 
(females)
All predose 12-lead ECGs should be obtained prior to blood sample collection.
Women of childbearing potential will have a urine pregnancy test prior to randomization
(Section 10.2.6).
Subjects who continue to meet all inclusion criteria and no exclusion criteria will be randomized 
as outlined in Section 6.4.
Once eligibility is confirmed, a Holter monitor will be placed on the subject and continuous 
Holter recording should begin approximately 15 minutes before first administration of study drug 
and continue for 8 hours post-treatment administration as described in Section 10.5.7.5.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 46 of 100
9.2.2.
Day 1 Post-Randomization
Randomization may occur on Day 1 after all eligibility criteria have been confirmed. It is 
recommended that procedures are performed in a consistent order and at approximately the same 
time of day for each visit. The recommended sequence of events is as follows:

Questionnaire administration 

AE review

Vital signs (performed with subject in the seated position)

12-lead ECG (performed with subject in the supine position) 

Physical examination including disease severity assessments

Blood sample collection for laboratory tests and predose PK sampling

Urine sample for urinalysis, drug screen, and pregnancy test if applicable
Day 1 pre-randomization vital signs (resting HR, BP, body temperature, and respiratory rate) will 
be used as Baseline measurements. The lowest predose HR measurement will be used for 
comparison to the postdose HR measurement. Refer to Section 10.5.7.5 for detailed guidance on 
Holter monitoring and Section 10.5.7.4 for detailed guidance on cardiac monitoring following 
administration of the first dose and subject discharge criteria postdose.
After dosing on Day 1:

At Hours 1, 2, and 3 (± 15 minutes) postdose, HR and BP will be assessed with the 
subject in the seated position, with the time recorded. If the subject has an 
HR < 50 bpm, or if cardiovascular symptoms develop (eg, chest pain, dizziness, 
palpitations, and/or syncope associated with reduction of HR), the subject should 
remain closely monitored, including 12-lead ECGs as clinically indicated, until the 
discharge assessment at 4 hours.

At the Hour 4 (± 15 minutes) discharge assessment, HR and BP will be assessed with 
the subject in the seated position; a 12-lead ECG will also be performed in the supine 
position. Subjects may be discharged from the clinic after the 4-hour assessment if 
they meet the criteria described in Table 7. Subjects not meeting the discharge criteria 
will require extended monitoring (Section 10.5.7.4).

Subjects experiencing a clinically relevant treatment-related symptomatic event (eg, 
chest pain, dizziness, palpitations, and/or syncope) associated with reduction of HR 
together with clinically relevant 12-lead ECG changes at any time during the 4-hour 
monitoring period should be discontinued from study drug (Table 8).
To minimize the risk of unintentional unblinding of treatment assignment, refer to guidance 
regarding disclosure of HR data discussed in Section 6.6.
A blood sample for PK assessment is to be taken 4 hours (± 15 minutes) postdose after the ECG
on Day 1.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 47 of 100
9.2.3.
Double-Blind Treatment Period Study Visits After Day 1
There is no in-clinic cardiac monitoring at Week 1. However, all subjects will undergo Holter 
monitoring as described in Section 10.5.7.5 at the Week 1 visit.
After the Day 1/Baseline study visit, a visit window of ± 1 day is permitted for the Week 1
(Cohort 2 only) and a visit window of ± 3 days is permitted for the other study visits during the 
24-Week Double-Blind Treatment Period.
Negative pregnancy test results must be documented for all women of childbearing potential 
prior to dosing at each study visit where study drug is administered. At each study visit, blood 
sample collections should be performed prior to dosing unless specified otherwise (eg, postdose 
PK assessments).
Subjects who discontinue treatment prematurely should have an ET visit within 1 week of when 
the last dose of study drug was taken (Section 9.5).
9.3.
Open-Label Extension Period
After completing the 24-week Double-Blind Treatment Period, eligibility for participation in the 
Open-Label Extension Period will be determined (Section 4.3). All eligible subjects in Cohort 1 
will receive etrasimod 2 mg orally, for at least 1 week during the Open-Label Extension Period.
Subjects in Cohort 1 will transition to 3 mg at the Week 25 visit or at their next Open-Label 
Extension study visit after the implementation of Amendments 2.0 and 2.1. Subjects in Cohort 2 
will receive etrasimod 2 mg orally, once daily for 1 week during the Open-Label Extension 
Period and then transition to etrasimod 3 mg orally, once daily for the remainder of the 
Open-Label Extension Period. Subjects from Cohort 1 who are already in the Open-Label 
Extension Period at the time of Amendments 2.0 and 2.1 implementation may be allowed to 
continue on etrasimod 2 mg at the Investigator’s discretion provided that they have achieved a 
SALT I score ≤20. A visit window of ± 3 days is permitted for all study visits during the 
28-week Open-Label Extension Period, except for Week 25, for which a visit window of ± 1 day 
is permitted.
For subjects that continue into the Open-Label Extension Period cardiac monitoring will be 
performed for at least 4 hours after dosing, as outlined in Section 10.5.7.4.
The recommended sequence of events presented for Double-Blind Treatment Period Day 1 
(Section 9.2.2) should be followed for visits during the Open-Label Extension Period, where 
applicable, with study drug being administered after blood sample collection.
Subjects will undergo Holter monitoring as described in Section 10.5.7.5 after dosing at the 
Week 24 visit, and at the Week 25 visit or following transition from 2 mg to 3 mg in the 
Open-Label Extension Period. 
If a subject ends study drug prior to Week 52, the ET visit assessments (ie, Week 52
assessments; Section 9.5) should be performed within 1 week of the last dose of study drug.
9.4.
Follow-Up/End of Study
Subjects who complete the Open-Label Extension Period will return for Safety Follow-Up Visits
2 weeks (± 3 days) and 4 weeks (± 3 days) after the last dose of study drug (which corresponds 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 48 of 100
to Week 54 and Week 56, respectively). Visit assessments are detailed in the Schedules of 
Assessments (Appendix 1 and Appendix 2).
Subjects who terminate the study drug early in the Double-Blind Treatment Period or 
Open-Label Extension Period should have Safety Follow-Up Visits 2 weeks (± 3 days) and 
4 weeks (± 3 days) after the last dose of study drug.
The final Safety Follow-Up Visit (ie, SFU 2) will also be the End of Study Visit.
All AEs should be recorded for up to 30 days after last dose of study drug (Section 10.5.8.2.2).
9.5.
Early Study Drug Termination
Subjects who stop taking study drug before Week 52 will return to the clinic for an ET visit. ET 
visit assessments are detailed in the Schedules of Assessments (Appendix 1 and Appendix 2).
The ET visit should occur within 1 week of the last dose of study drug. Site staff will work with 
subjects who withdraw early to obtain as much follow-up data as possible. Lymphocyte counts 
should be monitored until returned to approximately Baseline or stable. Whenever possible, 
subjects should continue in the study even if study drug has been discontinued. Subjects who 
discontinue study drug, but who consent to remain in the study will continue to comply with 
study visits and assessments.
Subjects who terminate the study drug early in the Double-Blind Treatment Period or 
Open-Label Extension Period should have Safety Follow-Up Visits 2 weeks and 4 weeks 
(± 3 days) after the last dose of study drug as described in Section 9.4.
9.6.
End of Study Visit
The End of Study Visit for an individual subject is defined as the date of the final study contact 
(eg, the final Safety Follow-Up Visit [ie, SFU 2]) when assessments or procedures are done.
10.
STUDY ASSESSMENTS AND PROCEDURES
10.1.
Subject Informed Consent
The Investigator, or a person designated by the Investigator, will obtain written informed consent 
from each subject before any study-specific activities are performed (Section 12.3).
10.2.
Screening and Eligibility
Subject eligibility will be assessed based on protocol inclusion and exclusion criteria as outlined 
in Section 4.1 and Section 4.2. All Screening evaluations must be completed and reviewed to 
confirm potential subjects meet all eligibility criteria.
Screening procedures must be completed within 28 days prior to receiving the first dose of study 
drug (Appendix 1 and Appendix 2).
An additional eligibility assessment will be performed at Week 24 to determine eligibility to 
continue into the Open-Label Extension Period, as outlined in Section 4.3.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 49 of 100
10.2.1.
Rescreening
If a subject fails ≥1 Screening laboratory (or other) assessment criteria, the assessment(s) may 
be repeated once at the discretion of the Investigator, and the subject may be randomized if 
criteria are then met, provided the assessments are completed within the Screening Period. Any 
rescreening laboratory assessments beyond 1 time will need to be discussed with the Medical 
Monitor before proceeding.
If a subject fails Screening, then 1 re-screening attempt during a new Screening Period may be 
made, if appropriate. Each subject must be reconsented prior to each Screening attempt.
10.2.2.
Demography and Other Subject Characteristics
Demographics including year of birth, sex at birth, Hispanic ethnicity, and race as described by 
the subject will be collected at Screening.
10.2.3.
Social History
The amount and duration of tobacco and alcohol use will be collected at Screening.
A standard urine drug screen (Table 5) will be performed at Screening and Day 1. Subjects who 
test positive will be assessed for eligibility to participate by the Investigator.
10.2.4.
Prior and Ongoing Therapies
Prior therapies related to the treatment of AA will be collected during Screening. Documentation 
should include the rationale for prior treatment failure. All ongoing medications will be recorded 
at Screening and updated as needed throughout the entire study.
10.2.5.
Medical History/Alopecia Areata History
A complete medical history of each subject will be collected and documented during Screening
and Day 1 to determine subject eligibility. The history should include recent blood donations 
(within 30 days), illnesses, hospitalizations, and participation in other investigational drug 
studies.
A detailed history of the subject’s AA, including date of diagnosis and disease severity over time 
will be collected during Screening.
10.2.6.
Pregnancy Testing
A serum pregnancy test for beta-human chorionic gonadotropin (β-hCG) will be performed at 
Screening on women of childbearing potential to determine eligibility. Post-Screening urine 
pregnancy tests (β-hCG) should be performed as indicated in the Schedules of Assessments 
(Appendix 1 and Appendix 2). A monthly home pregnancy test in non-visit months (Weeks 32, 
40, and 48) should be performed and any positive result immediately reported to the Investigator. 
If at any point there is a case of a positive urine β-hCG test, the subject will have study drug
interrupted and a serum sample will be submitted to the central laboratory for β-hCG testing. If 
the serum test confirms positive, the subject will be discontinued from the study drug and all the 
necessary follow-up will be conducted as per Section 10.5.9. If the serum test is negative, the 
subject may resume study drug.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 50 of 100
Negative pregnancy test results must be documented for all women of childbearing potential 
prior to dosing at applicable study visits. Women who are surgically sterile or who are 
postmenopausal are not considered to be of childbearing potential. Postmenopausal is defined as 
12 consecutive months with no menses without an alternative medical cause. A high 
follicle-stimulating hormone (FSH) level in the postmenopausal range may be used to confirm a 
postmenopausal state in women not using hormonal contraception or hormonal replacement 
therapy; however, in the absence of 12 months of amenorrhea, a single FSH measurement is 
insufficient.
10.2.7.
Active Infections or Live Vaccines
Given the mechanism of action of etrasimod and the known pharmacodynamic effect of 
lymphocyte lowering, subjects with known active infections will be excluded from the study. 
Live vaccinations and live-attenuated vaccines cannot be administered within 4 weeks of 
Screening, during Screening, during the Treatment Periods with study drug, or prior to study 
completion. Refer to Section 6.9 for additional information on vaccines. 
10.2.7.1.
Known Active Infections
Subjects with known active bacterial, viral, fungal, mycobacterial infection, or other infection 
(including TB or atypical mycobacterial disease) or any major episode of infection that required 
hospitalization or treatment with intravenous antibiotics within 4 weeks of Screening or during 
Screening, or oral antibiotics within 2 weeks before Screening will be excluded from the study. 
Superficial fungal infection of the nail bed will be allowed.
10.2.7.2.
Known or Suspected Immunodeficiencies
Subjects who have known or suspected immunodeficiencies will be excluded from the study; for 
example, subjects who have any of the following conditions or risk factors: 
a.
Primary or secondary immunodeficiency syndromes (eg, hereditary 
immunodeficiency syndrome, acquired immunodeficiency syndrome, drug-induced 
immune deficiency)
b. History of organ transplant (except corneal transplant)
c.
History of an opportunistic infection (eg, Pneumocystis jirovecii pneumonia, 
cryptococcal meningitis, PML)
d. History of disseminated herpes simplex or disseminated herpes zoster, or any episode 
of herpes zoster
e.
Test positive for HIV, hepatitis B (positive for HBsAg), or active hepatitis C (positive 
hepatitis C antibody with detectable viral load) at Screening
10.2.8.
Tuberculosis
TB screening should be done via an interferon-gamma release assay (IGRA) (eg, 
QuantiFERON-TB PLUS) in all subjects except those with a history of active or latent TB. In 
countries where IGRA testing is not approved/registered, a tuberculin skin test will be performed 
to screen for TB. Refer to Appendix 3 for details of TB screening and interpretation of test 
results.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 51 of 100
10.3.
Efficacy Assessments
Multiple parameters will be collected during the study to assess efficacy/effectiveness of 
etrasimod including measures of AA severity, and patient-reported measures of AA symptoms 
and quality of life. Questionnaires and PRO assessments should be administered prior to 
obtaining investigator assessments, safety and laboratory assessments, and study drug
administration. Refer to the study manual for instructions on the administration and use of all 
patient-reported instruments.
Wherever possible, to maintain consistency, the same individual at the site should administer the 
investigator assessments for a given subject for the duration of the study.
10.3.1.
Severity of Alopecia Tool
To participate in this study, a subject must have moderate-to-severe AA as assessed by a SALT I 
score of ≥50 (Cohort 1) and ≥25 and < 95 (Cohort 2) at Screening and Day 1/Baseline as 
described in Section 4.1.
SALT I is a well-validated metric and widely utilized tool for determining the degree of hair loss 
based on the percentage of scalp surface area involved on the top, back, and each side of the 
scalp for AA. Using the diagram in Figure 2, the Investigator will determine the percent scalp 
hair loss in a given quadrant, multiply this by the total scalp area delineated by that quadrant, and 
sum the resultant numbers for each quadrant to give the total percent scalp hair loss with a 
maximum score of 100 (Olsen 2004). SALT I scores at Screening, Baseline, and Week 24 will 
also be assessed by central review.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 52 of 100
Figure 2:
Visual Aid for Estimating Percentage Scalp Hair Loss Using the Severity of 
Alopecia Tool
Source: (Olsen 2004).
The SALT I will be assessed at timepoints according to the Schedules of Assessments
(Appendix 1 and Appendix 2).
10.3.2.
Scalp, Eyebrows, Eyelashes, and Fingernails Photography
Standardized photographs of the full scalp should be taken of the 4 views of the head (top, back, 
and each side of the scalp; Figure 2) at the visits specified in Appendix 1 and Appendix 2. A 
stereotactic positioning device on which the patient’s chin and forehead are fixed, and on which 
a given camera and flash device are mounted, may be used to assure that the view, 
magnification, and lighting are the same for all study visits. Photographs will be reviewed by 
central review to confirm AA severity (moderate to severe) at Screening.
Photographs of the eyebrows and eyelashes for subjects who have hair loss in these areas at 
Baseline will also be taken as will photographs of the fingernails for subjects with fingernail 
changes related to AA (eg, pitting, white spots, and roughness) at Baseline.
Any photographs taken of any identifiable features (such as the face, tattoos, or birthmarks) will 
be de-identified (eg, a masking bar over the eyes). In addition, codes will be used to identify 
photographs to the appropriate subject.
Subjects are to keep the same hair style and color; Baseline hair parting and combing should be 
duplicated for post-Baseline photos. Paired comparison of global photographs (before and after 
treatment) will be performed using central review.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 53 of 100
Photographs will be taken at timepoints according to the Schedules of Assessments (Appendix 1
and Appendix 2).
10.3.3.
Biomarkers
Blood samples for exploratory serum biomarker analysis will be collected in this study, as 
specified in the Schedules of Assessments (Appendix 1 and Appendix 2).
Serum from blood samples may be analyzed by specialty laboratory(ies) following completion of 
the study. Exploratory proteomic analysis may assess the efficacy and mechanism of action of 
etrasimod. Cytokines and chemokines
 
may be measured by enzyme-linked immunosorbent assay, mass 
spectrometry, or comparable technology. Details for collection, processing, and storage will be 
provided in the Laboratory Manual.
Residual samples will be stored at a facility selected by the Sponsor for up to 10 years (or in 
accordance with local regulations) after the last subject’s last visit for the study and may be used 
for future additional analyses to further understand AA, the response to treatment, and the 
mechanism of action of etrasimod. This may include analyses of biomarker variants thought to 
play a role in AA. These additional analyses (as appropriate) will only be conducted where 
allowed by the regulatory authorities and local ethics committees.
10.3.4.
Patient-Reported Outcomes
Planned timepoints for all PROs are provided in the Schedules of Assessments (Appendix 1 and
Appendix 2).
10.3.4.1.
Alopecia Areata Symptom Impact Scale
The AASIS is a 13-item, disease-specific measure that asks participants about symptoms related 
to AA and how these symptoms interfere with daily functioning (Mendoza 2018). Subjects will 
be asked to rate how severe each of the following 7 symptoms pertaining to AA symptoms have 
been in the past week using an 11-point scale ranging from 0 “not present” to 10 “as bad as you 
can imagine”:

Scalp hair loss

Body or eye lashes hair loss

Tingling/numbness of the scalp

Itchy or painful skin

Irritated skin

Feeling anxious or worry

Feeling sad
Subjects will also be asked to rate how severe each of the following 6 areas of daily functioning 
are interfered with by AA in the past week using an 11-point scale ranging from 0 = “did not 
interfere” to 10 “interfered completely”: work, enjoyment of life, interaction with others, daily 
activities, sexual relationships, and quality of life. The overall scoring system ranges from of 
CCI


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 54 of 100
0 to 10 (overall score is the arithmetic mean) with high scores indicative of greater AA symptom 
impact.
10.3.4.2.
Alopecia Areata-Related Quality of Life Index
The AA-QLI is a disease-specific questionnaire developed to evaluate the impact of AA on 
quality of life (Fabbrocini 2013). The AA-QLI has been validated with the Dermatology Life 
Quality Index (Basra 2015) and shown to provide more comprehensive insights about 
psychological distress among AA patients specifically. The results are presented on a scale 
varying between 21 and 84; a score of 21 represents the best quality of life, while a score of 84 
represents the poorest quality of life outcomes. The AA-QLI consists of questions covering 
3 areas of daily life: Subjective symptoms, relationships, and objective signs.
10.4.
Pharmacokinetic Assessments
Blood samples (4 mL) for plasma analysis of etrasimod will be collected at the following 
timepoints from all subjects who received ≥1 dose of study drug (etrasimod or placebo):

Predose (within 60 minutes prior to dosing) and at 4 hours (± 15 minutes) postdose 
(after ECG) on Day 1 and Week 24

Predose (trough; within 60 minutes prior to dosing) at Weeks 1 (Cohort 2 only), 2, 4, 
8, 12, 16, 20, 25, 28, 36, and 44

Anytime at Week 52 or at the ET visit, and at the follow-up visits, as applicable

If possible, at the time of any SAE, AE leading to study drug discontinuation, or AE 
of special interest (AESI). The time of the last study drug dose should be documented
Detailed procedures for blood sample collection and processing will be provided in a separate 
laboratory manual.
Plasma PK samples may also be used for profiling of drug binding proteins, bioanalytical 
method validation purposes, stability assessments, metabolite assessments, or to assess other 
actions of etrasimod with plasma constituents.
PK samples from placebo-treated subjects during the Double-Blind Treatment Period may be 
selectively assayed.
On study visit days when plasma samples for PK are being collected, subjects should wait to take 
their assigned dose at the study site after predose blood samples for PK have been drawn and 
after all predose assessments and procedures have been completed. Subjects should be instructed 
to document the time of their last dose prior to the study visit and the time must be recorded in 
the eCRF (Section 6.3). The time of administration of study drug during the study visits where 
plasma samples for PK are obtained must also be recorded in the source along with the time of 
each sample.
Drug concentration information that would unblind the study will not be reported to investigative 
sites or blinded personnel until the study has been unblinded.
Planned timepoints for all PK assessments are provided in the Schedules of Assessments
(Appendix 1 and Appendix 2).


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 55 of 100
10.5.
Safety Assessments
Planned timepoints for all safety assessments are provided in the Schedules of Assessments
(Appendix 1 and Appendix 2).
10.5.1.
Vital Signs
Resting vital signs measurements will be made with the subject in the seated position and include
HR, BP, body temperature, and respiratory rate. Vital signs will be measured prior to any blood 
draws that occur at the same study visit or overlapping timepoint. Planned timepoints for vital 
signs assessments are provided in the Schedules of Assessments (Appendix 1 and Appendix 2).
To minimize the risk of unintentional unblinding of treatment assignment, please refer to 
guidance regarding disclosure of HR data discussed in Section 6.6.
10.5.2.
Physical Examinations
Full physical examination includes the following assessments:

General inspection

Cardiac examination

Auscultation of lungs

Skin and nails

Head/eyes/ears/nose/throat

Neck and thyroid

Lymph nodes

Abdomen (liver, spleen, and lower abdomen)

Musculoskeletal

Body weight

Neurological

Height (Screening only)
Planned timepoints for physical examinations are provided in the Schedules of Assessments
(Appendix 1 and Appendix 2). For visits where a full physical examination is not required, 
symptom-directed physical examinations should assess any new signs or symptoms. 
Symptom-directed physical examination may be performed at the Investigator’s discretion at any 
time during the study. In addition to a symptom-directed physical examination, assessment at 
each study visit should include, at a minimum, measurement of weight. Findings will be 
documented in the eCRF.
10.5.3.
Electrocardiography
ECGs will be recorded from a 12-lead ECG machine. Every attempt should be made to ensure 
the subject ECG readings are obtained using the same machine throughout the study. All 12-lead 
ECGs will be recorded with subjects in supine position. Planned timepoints for ECG are 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 56 of 100
provided in the Schedules of Assessments (Appendix 1 and Appendix 2). Parameters to be 
provided on the confirmed read for each safety ECG are HR and the following intervals: RR, PR, 
QRS, QT, QT interval corrected (QTc), and QTcF.
The Investigator or designee will be responsible for the initial review and interpretation of 
12-lead ECGs on site and assessing if the ECG is normal, abnormal clinically insignificant, or 
abnormal clinically significant. Findings will be documented in the eCRF. The ECG tracings will 
also be sent to a central reader for final interpretation.
Specific guidance on ECG following the first dose of study drug during the Double-Blind 
Treatment and Open-Label Extension Periods is provided in Section 9.2.2 and Section 10.5.7.4.
10.5.4.
Clinical Laboratory Assessments
Details regarding clinical laboratory sample collection, preparation, and shipment are provided in 
the laboratory manual by the central laboratory. All laboratory assessments required by the 
protocol will be performed by a central laboratory unless otherwise stated. Refer to Table 5 for 
the list of clinical laboratory tests to be performed and the Schedules of Assessments
(Appendix 1 and Appendix 2) for timing and frequency for each test.
Clinical safety laboratory tests should be completed predose. The Investigator must review the 
laboratory report, document the review, and record any clinically relevant changes on the AE 
section of the eCRF (results of the white blood cell differential and ALC will be reviewed and 
monitored as described in Section 10.5.7.2). The laboratory reports must be filed with the source 
documents.
All laboratory tests with values considered clinically significantly abnormal during participation 
in the study or within 30 days after the last dose of study drug should be repeated until the values 
return to normal or Baseline or are no longer considered clinically significant by the Investigator.
If such values do not return to normal or Baseline, or otherwise resolve to a nonclinically 
significant value within a reasonable period of time, as judged by the Investigator, the etiology 
should be identified, and the Medical Monitor should be notified. In cases when laboratory 
values from non-protocol-specified assessments are performed at the institution’s local 
laboratory and result in a change in subject management or are considered clinically significant 
by the Investigator (eg, AE or dose modification), then the results must be recorded in the eCRF.
Information on the grading and management of laboratory abnormalities according to assessed 
severity is provided in Appendix 4 and Appendix 5.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 57 of 100
Table 5:
Clinical Laboratory Tests
Infectious Disease
HBsAg, HCV antibody (with reflex PCR), HIV, TBa
Drugs of Abuse
Urine drug screen: amphetamine, barbiturates, 
benzodiazepines, cocaine metabolites, opiates
Pregnancy and Postmenopausal Status Testing
Serum pregnancy test for β-HCG (Screening, only for 
females of childbearing potential)
Urine β-HCG (only for females of childbearing potential)
FSH (Screening, only if needed to determine 
postmenopausal status)
Coagulation
Activated partial thromboplastin time
International Normalized Ratio
Prothrombin time
Urinalysis
Appearance
Bilirubin
Color
Glucose
Ketones
Microscopic examination 
of sediment
Nitrite
Occult blood
pH
Protein
Specific gravity
Urobilinogen
Hematology
Hematocrit
Hemoglobin
Lymphocyte subsets (eg, CD4+, CD8+ and NK cells)b
Mean corpuscular hemoglobin
Mean corpuscular hemoglobin concentration
Mean corpuscular volume
Platelet count
Red blood cell count
White blood cell count with differentialb
Serum Chemistry
Albumin
Alkaline phosphatase
Alanine aminotransferase
Aspartate aminotransferase
Bicarbonate
Blood urea nitrogen
Calcium
Chloride
Creatinine with eGFR by CKD-EPI
Creatine kinase 
Gamma-glutamyl transferase
Glucose
Lactate dehydrogenase
Lipase
Magnesium
Phosphorus
Potassium
Sodium
Thyroid-stimulating hormone
Thyroxine (T4) free
Total bilirubin
Triiodothyronine (T3) free
Direct bilirubin
Total cholesterol
Total protein
Triglycerides
Uric acid
Exploratory Biomarkers
May be analyzed for changes in cytokines and chemokines from serum samples 
 
a TB screening will be done via an IGRA (eg, QuantiFERON-TB PLUS or equivalent assay) in all subjects except those with a history 
of active or latent TB. In countries where the QuantiFERON-TB PLUS test is not approved/registered, a tuberculin skin test will be 
performed to screen for TB.
b In the Double-Blind Treatment Period, these results will be monitored by an IMM. The IMM not be involved in any other aspects of 
study conduct or data analysis (Section 10.5.7.2). Investigators will remain blinded to the results.
β-hCG, beta-human chorionic gonadotropin; CD, cluster of differentiation; CKD-EPI, Chronic Kidney Disease Epidemiology 
Collaboration; FSH, follicle-stimulating hormone; eGFR, estimated glomerular filtration rate; HBsAg, hepatitis B surface antigen; HCV, 
hepatitis C virus; HIV, human immunodeficiency virus; IGRA, interferon-gamma release assay; 
 
IMM, Independent Medical Monitor; NK, natural killer; PCR, polymerase chain reaction; TB, tuberculosis
CCI
CCI


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 58 of 100
10.5.5.
Pulmonary Function Test
Subjects with known active severe pulmonary disease (eg, chronic obstructive pulmonary disease
or pulmonary fibrosis) or chronic pulmonary disease requiring intravenous corticosteroid 
treatment or hospitalization ≤12 months before Screening or during the Screening Period will be 
excluded from the study.
PFTs will be performed according to the Schedules of Assessments (Appendix 1 and 
Appendix 2) and include FEV1, FVC, and forced expiratory flow at 25 to 75% (FEF 25-75)
measurements. Where locally available, diffusing capacity of the lungs for carbon monoxide 
(DLCO) measurements will also be performed. Because carbon monoxide binds readily to 
hemoglobin, the diffusion capacity needs to be corrected for hemoglobin in order to reflect an 
altered lung gas transport rather than altered hemoglobin.
Due to the COVID-19 pandemic, access to pulmonary function laboratories and respiratory 
departments may be restricted or limited. As an option for conducting these assessments, sites 
may use adequately trained internal or external staff and appropriate equipment. These tests will 
be conducted in compliance with the standards set forth by the American Thoracic Society 
(ATS) and the protocol. Reviews of the pulmonary function test measurements will be conducted 
by a respiratory specialist to ensure that the pulmonary measurements meet these standards.
These tests will be conducted in all subjects in a manner consistent with the American Thoracic 
Society/European Respiratory Society guidelines for standardization of spirometry and single 
breath determination of carbon monoxide uptake in the lung (MacIntyre 2005, Miller 2005a, 
Miller 2005b).
Patient respiratory history will be collected at the Screening Visit, and any condition that might 
affect the outcome of PFT testing, including infection, respiratory symptoms, occupational 
exposures (including asbestos), and cigarette smoking, will be collected before every PFT and 
recorded in the eCRF. Furthermore, any issues with subject effort or compliance with the test 
procedure should be explicitly recorded in the eCRF. This information is important to determine 
whether PFT abnormalities may be the result of poor effort or compliance with test procedure.
The window to perform PFTs and DLCO is between Day 28 and Day 1 for the Screening 
Visit, 14 days for the Week 24 visit, and ± 10 days for all other post-screening visits. PFT 
assessment may be required at the 4-week Follow-Up visit if PFT results at the Week 52 or ET 
visit demonstrate a clinically significant decrease relative to Baseline. In addition, subjects 
reporting any respiratory symptoms (eg, dyspnea, shortness of breath, chest tightness, or 
wheezing) should be seen at an unscheduled visit for clinical assessment and full PFT 
assessment, preferably on the same day. Additional guidance on clinical monitoring of 
pulmonary functions is provided in Section 10.5.7.5.
10.5.6.
Ophthalmoscopy and Optical Coherence
Subjects with a history of or active diabetic retinopathy, uveitis, retinitis pigmentosum or 
macular edema will be excluded from the study, as well as those with recent intraocular surgery.
A complete ophthalmoscopy and OCT assessment will be performed according to the Schedules
of Assessments (Appendix 1 and Appendix 2). The window to perform this testing is between
Day 28 and Day 1 for the Screening Visit, 14 days for the Week 24 Visit, and ± 10 days for 
all other post-screening visits.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 59 of 100
A standard visual acuity chart should be used for the visual acuity assessment. The OCT machine 
used should preferably not be changed during the study to allow for comparison of central foveal 
thickness measurements within each subject across timepoints.
Screening Visit:
At the Screening Ophthalmology Visit, the eye examination will include:

Ophthalmologic history

Best corrected visual acuity measurement (autorefraction, using Snellen chart 
internationally)

Ophthalmoscopy (may include contact lens biomicroscopy to examine the macula and 
optic disc)

Measurement of central foveal thickness by OCT (recorded in micrometers; required 
for all subjects regardless of the results of visual acuity or ophthalmoscopy)

Retinal photographs should be taken

Ophthalmic findings should be recorded

If there is a suspicion of macular edema by ophthalmoscopy and increased central 
foveal thickness by OCT, then a fluorescein angiography (FA) may be performed (at 
the discretion of the ophthalmologist). Subjects with diagnosed macular edema at 
Screening should be deemed a screening failure and should not be randomized
Scheduled Post-Screening Visits:
At the scheduled ophthalmology visit, the eye examination will include:

Ophthalmic history

Best corrected visual acuity measurement

Ophthalmoscopy (may include contact lens biomicroscopy to examine the macula and 
optic disc)

Measurement of central foveal thickness by OCT

Retinal photographs should be taken

Ophthalmic findings should be recorded
Subjects experiencing unexpected ophthalmic symptoms without a known suspected etiology or 
experiencing a relevant ophthalmic AE may need to have repeated ophthalmoscopy and OCT 
testing performed. Guidance on clinical monitoring of ophthalmic symptoms is provided in 
Section 10.5.7.7.
10.5.7.
Safety Monitoring Guidance
10.5.7.1.
Drug-Induced Liver Injury
Based on US FDA guidance for drug-induced liver injury (FDA 2009), discontinuation of study 
drug should be considered if any of the following occur:


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 60 of 100

ALT or AST > 8 × ULN

ALT or AST > 5 × ULN for > 2 weeks

ALT or AST > 3 × ULN AND Total Bilirubin > 2 × ULN, or international 
normalized ratio > 1.5

ALT or AST > 3 × ULN with the appearance of fatigue, nausea, vomiting, right upper 
quadrant pain or tenderness, fever, rash, and/or eosinophilia (> 5%)
Information on the grading and management of laboratory abnormalities according to assessed 
severity is provided in Appendix 4 and Appendix 5.
10.5.7.2.
Total WBC, WBC Differential, Lymphocyte Counts, and Infections
Etrasimod prevents lymphocyte egress from lymphoid tissues, resulting in a reduction in 
peripheral lymphocyte count and lymphocyte availability for recruitment to sites of 
inflammation. To minimize the risk of unintentional unblinding of treatment assignment, site 
staff including Investigators will be blinded to total white blood cell (WBC) count, WBC
differential (percentage and absolute number), and lymphocyte subset results during the
Double-Blind Treatment Period. Investigators should minimize review of WBC count and 
differential, and lymphocyte subset results obtained by other health care providers caring for 
study subjects when review of those data is not required to ensure the safety of study subjects.
In the Double-Blind Treatment Period, total WBC count, WBC differential, and lymphocyte 
subset results will be monitored by an IMM. The IMM will not be involved in any other aspects 
of study conduct or data analysis. If these laboratory values require follow-up during the Double-
Blind Treatment Period, the IMM will notify the Investigator and provide instruction. Blinded 
values may be released to treating physicians and Investigators as deemed medically necessary.
The Investigator will not be blinded to laboratory results during the Open-Label Extension. 
Investigators should refer to Appendix 5 for laboratory adverse events aside from ALC 
decreases.  
ALC reduction is an on-target effect of etrasimod treatment. However, if ALC is confirmed 
below the 0.2 × 109 cells/L limit, study drug should be interrupted and should not be re-initiated 
if the ALC remains below this threshold. Investigators will repeat complete blood count with 
differentials weekly until ALC > 0.5 × 109 cells/L. Re-initiation of the study drug should only be 
considered when ALC > 0.5 × 109 cells/L. If a subject in the Open-Label Extension has a 
treatment interruption due to ALC < 0.2 × 109 cells/L, then that subject may be re-initiated at 
2 mg etrasimod and maintained for the rest of the Open-Label Extension without escalation to 
3 mg etrasimod (Section 6.3.2). 
Refer to Section 10.5.7.3 for information on monitoring for signs and symptoms of infections 
and diagnostic work-up and treatment of infections.
10.5.7.3.
Guidance on Monitoring Subjects for Infections
Reduction in peripheral lymphocyte count may have immunosuppressive effects. Low 
lymphocyte counts with the use of other S1P receptor modulators in patients with multiple 
sclerosis have been associated with serious and atypical infections (GILENYA 2010, 
MAYZENT 2019).


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 61 of 100
To date, there have been no reports of PML with the use of etrasimod in clinical studies. 
Nevertheless, Investigators should remain vigilant in monitoring for signs and symptoms of 
serious and atypical infections during the study and after discontinuation of study drug (ie, the 
4-week Follow-Up Period).
If a subject exhibits signs and symptoms suspicious for PML, study drug must be interrupted and 
cannot be restarted until diagnostic evaluation is completed and PML has been excluded. The 
Medical Monitor should be informed of any suspected cases of PML. Refer to Appendix 6 for 
PML signs and symptoms and case evaluation algorithm. In the evaluation and management of 
treatment-emergent infections, Investigator may consult with infectious disease or relevant 
experts, as needed.
All radiologic images (eg, magnetic resonance imaging, computer tomography, X-rays) and 
diagnostic laboratory test results performed by local laboratories/facilities should be retained as 
source documents by study sites and made available upon request by the Sponsor for central 
adjudication as needed. All infections that develop during the study will be reported as AEs on 
the respective eCRF pages.
10.5.7.4.
Guidance for Cardiac Monitoring Following Treatment Initiation or 
Re-Initiation
Cardiac monitoring following treatment initiation applies to both the Double-Blind Treatment 
(Day 1) and Open-Label Extension (Week 24) Periods. Cardiac monitoring may also be 
necessary to re-initiate study drug after dosing interruption (refer to Section 6.3.2).
Pre-randomization (ie, Baseline) and Week 24 predose vital signs (resting HR, BP, body 
temperature, and respiratory rate) will be used as the Baseline measurements for each respective 
visit. The lowest predose HR measurement will be used for comparison to the postdose 
measurement.
To minimize the risk of unintentional unblinding of treatment assignment, please refer to 
guidance regarding disclosure of HR data discussed in Section 6.6.
First Dose Heart Rate Monitoring
In-clinic cardiac monitoring, of at least 4 hours following the first dose, will occur on Day 1,
Week 24 and at treatment re-initiation and will include the following (Table 6):

Full Baseline vital signs (HR, BP, body temperature, and respiratory rate) and 12-lead 
ECG will be assessed pre-randomization (ie, Baseline) for Day 1 and predose for 
Week 24.

Holter monitoring will be performed as described in Section 10.5.7.5.

After the dose of study drug on Day 1 and, Week 24, and for the first dose when a 
subject re-initiates study drug, subjects must remain under direct observation in the 
clinic for at least 4 hours.

At Hours 1, 2, and 3 (± 15 minutes) postdose, HR and BP will be assessed via vital 
signs with the subject in the seated position, with the time recorded. If the subject has 
an HR < 50 bpm, or if cardiovascular symptoms develop (eg, chest pain, dizziness, 
palpitations, and/or syncope associated with reduction of HR), the subject should 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 62 of 100
remain closely monitored, including 12-lead ECGs as clinically indicated, until the 
Hour 4 discharge assessment.

At the Hour 4 (± 15 minutes) discharge assessment, HR and BP will be assessed via 
vital signs with the subject in the seated position; a 12-lead ECG in the supine 
position will also be performed. Subjects may be discharged from the clinic after the 
4-hour assessment if they meet the criteria described in Table 7. Subjects not meeting 
the discharge criteria will require extended monitoring as described below.

Subjects experiencing a clinically relevant treatment-related symptomatic event (eg,
chest pain, dizziness, palpitations, and/or syncope) associated with reduction of HR 
together with clinically relevant 12-lead ECG changes at any time during the 4-hour 
monitoring period should be discontinued from study drug (Table 8).
Table 6:
Procedures to be Performed During the Cardiac Monitoring Period
Procedure
Predose
Hours 1, 2, and 3
Postdosea
Hour 4
Postdosea
Blood pressure and heart rateb
X
X
X
12-lead electrocardiogram
X
X
Holter monitorc
X
Assess discharge criteria
X
a Measurements may be taken ± 15 minutes of the scheduled time.
b Heart rate is based on vital signs.
c Monitoring from 15 minutes before dosing until Hour 8 (± 15 minutes) postdose (Section 10.5.7.5).
Table 7:
Discharge Criteria After Cardiac Monitoring
Subjects will be released from the clinical site after dosing on Day 1 and Week 24 (but no sooner than 
4 hours postdose) when they fulfill the following discharge criteria:

Vital sign heart rate ≥50 bpm

If vital sign heart rate < 50 bpm, then the decrease from Baseline must be < 10 bpm

No evidence from ECG of second-degree AV block or higher

No patient-reported cardiac symptoms (eg, chest pain, dizziness, palpitations, lightheadedness, 
shortness of breath, or syncope)
Note: Subjects should have written instructions on when to return to the clinic and a 24-hour contact phone number to call in the
event of any new or worsened cardiovascular symptoms.
AV, atrioventricular; bpm, beats per minute; ECG, electrocardiogram
Extended Cardiac Monitoring
Subjects who do not meet discharge criteria at 4 hours postdose will require extended cardiac 
monitoring:

Vital signs will be assessed hourly and a 12-lead ECG may be performed, as 
clinically indicated, until the subject meets the discharge criteria (Table 7).

The Medical Monitor should be contacted if the subject does not meet the discharge 
criteria after ≥4 hours of extended cardiac monitoring.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 63 of 100

Any subject who requires extended monitoring must return the following day for the 
subsequent dose and will be re-monitored as on the previous day. These subjects will 
be discontinued from study drug if they do not meet the discharge criteria at 4 hours 
after the subsequent dose during re-monitoring. Extended cardiac monitoring should 
be continued until the subject meets the discharge criteria (Table 7).

Subjects experiencing a symptomatic event (eg, chest pain, dizziness, palpitations, 
lightheadedness, shortness of breath, and/or syncope) at any time during the 4-hour 
monitoring period that is not associated with either a reduction in HR or clinically 
relevant change in 12-lead ECG, may be discharged provided they meet the discharge 
criteria (Table 7), as deemed appropriate by the Investigator; however, these subjects 
must return the following day for the subsequent dose and will be re-monitored as on 
the previous day. These subjects should be discontinued from treatment if they do not 
meet the discharge criteria at 4 hours after the subsequent dose during re-monitoring 
and extended cardiac monitoring should be continued until the subject meets the 
discharge criteria (Table 7).
Study Drug Discontinuation Related to Postdose Cardiac Monitoring
A complete list of reasons for study drug discontinuation is provided in Section 8.1. Reasons for 
study drug discontinuation specific to postdose cardiac monitoring are provided in Table 8. The 
Medical Monitor should be contacted before discontinuing a subject from study drug. 
Table 8:
Discontinuation of Study Drug Related to Postdose Cardiac Monitoring
Reasons for Study Drug Discontinuation Related to Postdose Cardiac Monitoringa

Subjects who have a cardiovascular treatment-related symptomatic event (eg, chest pain, dizziness, 
palpitations, lightheadedness, shortness of breath, and/or syncope) associated with reduction of the 
HR or associated with clinically relevant 12-lead ECG changes at any time during the 4-hour 
monitoring period on Day 1 or Week 24 (or the following day during re-monitoring as applicable).

Subjects who have not met the discharge criteria on Day 1 or Week 24 after ≥4 hours of extended 
monitoring, or the subsequent day during re-monitoring by 4 hours postdose.
a All treatment discontinuations should be discussed with the Medical Monitor.
ECG, electrocardiogram; HR, heart rate
Cardiac Monitoring Upon Treatment Re-Initiation Following Dose Interruption 
The procedure for first-dose cardiac monitoring as outlined should be performed and discussed 
with the Medical Monitor any time a subject misses study drug dosing as follows:

≥2 consecutive days within the first week of study drug during the Double-Blind 
Treatment Period and within the first week of study drug during the Open-Label 
Extension Period

≥7 consecutive days after the first week of study drug during the Double-Blind 
Treatment Period and after the first week of study drug during the Open-Label 
Extension Period
If these doses of study drug are missed, subjects must contact the Investigator to discuss 
treatment re-initiation and are required to return to the study site before taking their next dose of 
study drug at the study site.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 64 of 100
10.5.7.5.
Holter Monitoring
Continuous Holter recording will be performed for subjects from 15 minutes pre-treatment 
through 8 hours post-treatment any time a subject transitions from 2 mg to 3 mg etrasimod and at 
all timepoints specified in Appendix 1 and Appendix 2. A subject will be discharged from the 
study site with the Holter monitor in place and continue to wear the Holter monitor until Hour 8 
(± 15 minutes) post-treatment administration. Subjects will be instructed how to remove and 
store the Holter monitor, record the time the device is removed, and to return the device for 
analysis at the next in-person study visit. If the subject requires extended in-clinic cardiac 
monitoring ≥8 hours, the Holter will be removed on-site at Hour 8 prior to discharge. Holter 
data will be captured on the device and sent to the Holter laboratory. The Holter laboratory will 
be responsible for central reading, analysis, and interpretation. Holter recording results may be 
made available to study sites.
Holter recording will principally be used for determination of HR and potential arrhythmias (eg,
pauses, AV block). Point estimates will be obtained at specified times. The central Holter 
laboratory may determine additional parameters or perform additional analyses from digitized 
Holter monitor recordings including but not limited to those indicated by the initial analyses or 
safety events. Additional information is provided in the Holter manual.
10.5.7.6.
Pulmonary Function Monitoring
Based on changes in pulmonary function observed with the use of S1P receptor modulators 
fingolimod and siponimod, approved for relapsing multiple sclerosis (GILENYA 2010,
MAYZENT 2019), pulmonary function will be assessed in this study at Screening, Week 12, 
Week 24, Week 52, and ET if applicable (Appendix 1 and Appendix 2).
Subjects experiencing clinically significant dyspnea or other respiratory AEs may need to have 
additional PFT testing as clinically indicated. Severity of respiratory AEs should be categorized 
using the CTCAE scale described in Appendix 4. Investigators should consider interruption of 
study drug when there is a clinically significant respiratory AE considered related to study drug 
that leads to limitations in instrumental or self-care activities of daily living. The decision to 
interrupt study drug should be discussed with the Medical Monitor. Subjects should be promptly 
referred to a pulmonologist for further evaluation and treatment. The pulmonologist should be 
provided with a standard referral letter explaining the reason for the referral along with 
information about the investigational drug. Clinically significant respiratory AEs should be 
followed until there is stability, improvement, or resolution.
Re-initiation of study drug can only be considered if the respiratory AE has improved, stabilized,
and/or resolved, the individual risk-benefit is favorable (as determined by the Investigator, in 
agreement with the pulmonologist) and after discussion with the Medical Monitor.
10.5.7.7.
Ophthalmic Symptom Monitoring
Based on reports of macular edema observed with the use of S1P receptor modulators fingolimod 
and siponimod, approved for relapsing multiple sclerosis (GILENYA 2010, MAYZENT 2019), 
ophthalmic testing, including OCT, will be assessed in this study at Screening, Week 12, 
Week 24, Week 52, and ET if applicable (Appendix 1 and Appendix 2).


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 65 of 100
Subjects experiencing unexpected ophthalmic symptoms, including blurred vision, decreased 
visual acuity, or other clinically significant ocular AEs, without a known/suspected etiology may 
need to have repeated ophthalmoscopy and OCT testing performed. If there is evidence of new 
onset macular edema considered related to study drug, then study drug should be interrupted as 
appropriate and the subject should be monitored closely with the appropriate diagnostic and 
clinical work-up.
Unscheduled ophthalmology visits in case of any visual complaint:
If, during the study, there are complaints of decreased vision or identification of worsening 
visual acuity (equal to or more than 2 lines on a standard eye chart using best corrected vision) 
then an unscheduled ophthalmic examination should be performed.
At an unscheduled ophthalmology visit, the eye examination will include

Best corrected visual acuity measurement

Ophthalmoscopy (may include contact lens biomicroscopy to examine the macula and 
optic disc)

OCT for all subjects to investigate a suspected diagnosis of macular edema
Note: For both scheduled and unscheduled visits, in case of suspected macular edema based on 
the ophthalmoscopy or a relevant increase of central foveal thickness, then FA may be 
performed.
Subjects with a diagnosis of macular edema considered related to study drug during the study 
must interrupt the study drug. These subjects must be followed up monthly with ophthalmologic 
evaluations until such time as resolution is confirmed or no further improvement is expected by 
the ophthalmologist (based on a follow-up period of not less than 3 months). These evaluations 
will include repeated best-corrected visual acuity, fundus examination, and OCT. FA may also 
be performed at the discretion of the ophthalmologist. If the subject does not show definite signs 
of improvement on examination by specialist testing (eg, OCT, FA) after interruption of study 
drug, then therapy for macular edema in conjunction with an ophthalmologist experienced in the 
management of this condition should be initiated at the Investigator’s discretion.
For subjects diagnosed with macular edema, copies of the colored OCT and FA images (if 
conducted) should be kept by the investigative site as source documents. These documents may 
need to be submitted for review by an independent panel.
10.5.8.
Adverse Events
10.5.8.1.
Definitions
10.5.8.1.1. Adverse Event
An AE is any untoward medical occurrence that does not necessarily have a causal relationship 
with this treatment. An AE can therefore be any unfavorable and unintended sign, symptom, or 
disease temporally associated with the use of a medicinal product, whether or not considered 
related to the medicinal product.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 66 of 100
AEs can include, but are not limited to, any of the following:

Unfavorable changes in general condition

Subjective or objective signs/symptoms

Concomitant disease or accidents

Clinically relevant adverse changes in laboratory parameters over the course of the 
study

Pre-existing conditions that worsen in severity, increase in frequency, or have new 
signs/symptoms
Information on the grading and management of laboratory abnormalities according to assessment 
severity is provided in Appendix 4 and Appendix 5, respectively.
10.5.8.1.2. Serious Adverse Event
An AE should be classified as an SAE if it meets 1 of the following criteria:
Fatal:
The AE resulted in death.
Life-threatening:
The AE placed the subject at immediate risk of death. This 
classification does not apply to an AE that hypothetically might cause 
death if it were more severe.
Hospitalization:
The AE required or prolonged an existing inpatient hospitalization. 
Hospitalizations for elective medical or surgical procedures or 
treatments planned before the signing of informed consent in the study 
or routine check-ups are not SAEs by this definition.
Disabling/ 
incapacitating:
The AE resulted in a persistent or significant incapacity or substantial 
disruption of the subject’s ability to conduct normal life functions.
Congenital anomaly 
or birth defect:
An adverse outcome in a child or fetus of a subject exposed to the 
study drug before conception or during pregnancy.
Medically significant:
The AE did not meet any of the above criteria but could have 
jeopardized the subject and might have required medical or surgical 
intervention to prevent 1 of the outcomes listed above or involves 
suspected transmission via a medicinal product of an infectious agent.
Additionally, in this study, any diagnosis of PML will be considered an SAE.
10.5.8.1.3. Adverse Drug Reaction
An adverse drug reaction (ADR) in the pre-approval clinical experience with a new medicinal 
product or its new usages, particularly as the therapeutic dose(s) may not be established, is any 
noxious and unintended response to a medicinal product related to any dose. The phrase 
“responses to a medicinal product” means that a causal relationship between a medicinal product 
and an AE is at least a reasonable possibility (ie, the relationship cannot be ruled out).


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 67 of 100
10.5.8.1.4. Adverse Events of Special Interest
Based on the mechanism of action of etrasimod and prior experience with other agents acting via 
a similar mechanism, potential events of interest may be identified. In addition to appropriate 
reporting of these events as an AE or an SAE, supplementary detailed information may be 
collected.
10.5.8.1.5. Severity
The severity of each AE will be assessed at the onset by the Investigator. When recording the 
outcome of the AE, the maximum severity of the AE experienced will also be recorded. The 
severity of each AE will be graded according to the CTCAE:
Grade 1:
Mild; asymptomatic or mild symptoms; clinical or diagnostic 
observations only; intervention not indicated.
Grade 2:
Moderate; minimal, local or noninvasive intervention indicated; 
limiting age-appropriate instrumental activities of daily living.
Grade 3:
Severe or medically significant but not immediately life-threatening; 
hospitalization or prolongation of hospitalization indicated; disabling, 
limiting self-care activities of daily life (eg, preparing meals, shopping 
for groceries or clothes, using the telephone, managing money).
Grade 4:
Life-threatening consequences, urgent intervention indicated.
Grade 5:
Death related to AE.
Additional information on CTCAE grading of AEs is provided in Appendix 4.
10.5.8.1.6. Relationship
The Investigator is obligated to assess the relationship (causal relationship) between the study 
drug and each occurrence of each AE. The AE relationship (causal relationship) to study drug
must be characterized as 1 of the following categories:
Not Related:
The AE does not follow a reasonable temporal sequence from 
administration of the drug, does not abate upon discontinuation of the 
drug, does not follow a known or hypothesized cause-effect relationship, 
and (if applicable) does not reappear when the drug is reintroduced, 
furthermore, there may exist a clear alternative medical explanation (eg, 
underlying disease state) or association with study procedure or study 
conduct.
Unlikely Related:
The temporal association between the AE and the drug is such that the 
drug is not likely to have any reasonable association with the AE.
Probably Related:
The AE follows a reasonable temporal sequence from administration of 
the drug and cannot be reasonably explained by the known 
characteristics of the subject’s clinical state, environmental, or toxic 
factors, or other modes of therapy administered to the subject.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 68 of 100
Related:
The AE follows a reasonable temporal sequence from administration of 
the drug, abates upon discontinuation of the drug, follows a known or 
hypothesized cause-effect relationship, and (if appropriate) reappears 
when the drug is reintroduced.
The Investigator will use clinical judgment to determine the relationship (causal relationship). 
Alternative causes, such as underlying disease(s), concomitant therapy, and other risk factors, as 
well as the temporal relationship of the event to the study drug administration should be 
considered and investigated. The Investigator should consult the IB and the Product Information 
of marketed products within the drug class, when applicable. For each AE, the Investigator must 
document in the medical notes that he/she has reviewed the AE and has provided an assessment 
of causality. There may be situations in which an SAE has occurred, and the Investigator has 
minimal information to include in the initial report to the Sponsor; however, the Investigator 
should always make an initial assessment of causality for every event before the initial 
transmission of the SAE to the Sponsor. The Investigator may change his/her opinion of 
causality based on subsequent receipt of information and send an SAE follow-up report with the 
updated causality assessment. The causality assessment is one of the criteria used when 
determining regulatory reporting requirements.
10.5.8.2.
Eliciting, Recording, and Reporting Adverse Events
10.5.8.2.1. Eliciting Adverse Events
Subjects will be instructed that they may report AEs at any time. An open-ended or nondirected 
method of questioning should be used at each study visit to elicit the reporting of AEs.
10.5.8.2.2. Recording Adverse Events
The AE reporting period for safety surveillance begins when the subject is initially included in 
the study (date of first signature of informed consent) and continues up to 30 days after the last 
study drug administration. If an AE is not resolved or stabilized by this time, the Sponsor in 
consultation with the Investigator will decide whether to continue to monitor the AE or closeout 
the event in the database if no further follow-up is necessary.
Any SAE suspected to be related to the study drug must be reported whenever it occurs, 
irrespective of the time elapsed since the last administration.
Investigator and study personnel will record all AEs and SAEs whether received through an 
unsolicited report by a subject, elicited during subject questioning, discovered during physical 
examination, laboratory testing, and/or other means by recording them on the eCRF and SAE 
Report Form, as appropriate. The following information should be recorded on the AE eCRF:

Description including onset and resolution dates

Whether it met SAE criteria

Severity

Relationship to study drug or other causality

Action taken with study drug


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 69 of 100

Outcome
For SAEs, events occurring secondary to the primary event should be described on the SAE 
Report Form in the narrative description field.
The following should be considered when recording SAEs:

Death is an outcome of an event. The event that resulted in the death should be 
recorded and reported on the SAE Report Form and eCRF.

For hospitalizations, surgical, or diagnostic procedures, the illness leading to the 
surgical or diagnostic procedure should be recorded as the SAE, not the procedure 
itself. The procedure should be captured in the narrative as part of the action taken in 
response to the illness.
10.5.8.2.3. Diagnosis Versus Signs or Symptoms
In general, the use of a unifying diagnosis is preferred to the listing out of individual symptoms. 
Grouping of symptoms into a diagnosis should only be done if each component sign and/or 
symptom is a medically confirmed component of a diagnosis as evidenced by standard medical 
textbooks. If any aspect of a sign or symptom does not fit into a classic pattern of the diagnosis, 
report the individual symptom as a separate AE.
10.5.8.3.
Reporting Serious Adverse Events
All SAEs are subject to reporting requirements.
10.5.8.3.1. Serious Adverse Events
All SAEs, whether or not considered related to study drug, must be reported to the Sponsor 
Contact within 24 hours of becoming aware of the event. In addition, a completed report using 
the Sponsor’s SAE Report Form must be submitted within 24 hours of awareness to the 
designated Sponsor Contact.
If additional follow-up information is required or becomes available for a previously reported 
SAE, the new information should be reported to the designated Sponsor Contact within 
24 hours of awareness.
Elective hospitalization and/or surgery for clearly pre-existing conditions (eg, a surgery that has 
been scheduled prior to the subject’s entry into the study) will not be reported as an SAE. 
Any SAE that is ongoing when the subject completes the study or discontinues the study will be 
followed by the Investigator until the event resolves, stabilizes or returns to Baseline status.
PPD


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 70 of 100
10.5.8.3.2. Serious, Unexpected Adverse Drug Reactions
All ADRs that are both serious and unexpected are subject to expedited reporting to regulatory 
agencies. An unexpected ADR is one for which the nature or severity is not consistent with 
information in the relevant source documents.
The following documents or circumstances will be used to determine whether an AE/ADR is 
expected:
1. For a medicinal product not yet approved for marketing in a country, the RSI section of 
the company’s IB will serve as the source document in that country.
2. Reports that add significant information on specificity or severity of a known, already 
documented serious ADR constitute unexpected events. For example, an event more 
specific or more severe than described in the RSI in the IB would be considered 
“unexpected”.
10.5.9.
Pregnancy
If at any point any pregnancy test is confirmed positive, the subject will be withdrawn from the 
study drug.
Details of all pregnancies in female subjects and female partners of male subjects will be 
collected after the start of study drug and until 30 days after the last dose.
Pregnancy (during maternal or paternal exposure to study drug) does not meet the definition of 
an AE; however, to fulfill regulatory requirements, any pregnancy and/or pregnancy outcome 
should be reported via the Pregnancy Report Form to the designated Sponsor Contact within 
24 hours of awareness to collect data on the pregnancy and on the outcome for both the mother 
and the fetus.
Abnormal pregnancy outcomes (eg, spontaneous abortion, fetal death, stillbirth, congenital 
anomalies, ectopic pregnancy) are considered SAEs and should be reported as such even if 
outside the SAE reporting period.
10.6.
Procedures for Overdose
The current version of the IB should be referenced for overdose procedures.
There is no established overdose threshold for this clinical study, nor is there any recommended 
specific treatment for an overdose but to provide supportive care if clinically indicated.
In the event of a suspected overdose, the Investigator and/or treating physician should:
1. Closely monitor the subject for any AE/SAE and laboratory abnormalities and follow AE 
reporting process, including contacting the Medical Monitor.
2. Obtain a plasma sample for PK analysis within 7 days from the date of the last dose of 
study drug, if possible, and if requested by the Medical Monitor.
3. Document the total quantity of the excess dose, taking into consideration the duration of 
the overdose in the eCRF and the time frame.
Subjects who overdose will be counseled on correct dosing and administration of study drug. 
Decisions regarding study discontinuation, dose interruptions, or dose modifications will be 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 71 of 100
made by the Investigator in consultation with the Medical Monitor based on the clinical 
evaluation of the subject.
11.
PLANNED STATISTICAL METHODS
11.1.
General Considerations
Statistical considerations will be discussed in Section 11.2 to Section 11.9 for the Double-Blind 
Treatment Period, and in Section 11.10 for the Open-Label Extension Period. An analysis of 
efficacy and safety data will be performed after all subjects have completed or early terminated 
from the 24-week Double-Blind Treatment Period. A final analysis of efficacy and safety data 
will be performed once all subjects completed or early terminated from the study. Details 
regarding the statistical analyses will be provided in the Statistical Analysis Plan (SAP), which 
will be finalized prior to database lock of the double-blind portion of the study.
Continuous variables will be summarized using the number of observations, mean, standard 
deviation (SD), median, minimum, and maximum. Categorical variables will be summarized 
using frequency counts and percentages.
All summaries, statistical analyses, and individual subject data listings described in this section 
will be produced using SAS® (Version 9.4 or later; SAS Institute, Inc. Cary, NC).
11.2.
Determination of Sample Size
Subjects will be randomized as follows:

Cohort 1: 36 subjects in 2:1 randomization ratio (24 subjects to etrasimod 2 mg and 
12 subjects to placebo)

Cohort 2: 42 subjects with SALT I < 95 at Baseline in 4:1:2 randomization ratio 
(24 subjects to etrasimod 3 mg, 6 subjects to etrasimod 2 mg, and 12 subjects to 
placebo)
Assuming a 15% drop-out rate from the study over 24 weeks, at least 35 treatment completers 
(20 subjects to etrasimod 3 mg, 5 subjects to etrasimod 2 mg, and 10 subjects to placebo from 
Cohort 2; plus subjects from Cohort 1 with SALT I < 95 at Baseline) at Week 24 will provide at 
least 80% and 47% power to detect a treatment difference of 20% for etrasimod 3 mg and 
etrasimod 2 mg from placebo, respectively, in the percent change from Baseline in SALT I at 
Week 24 by a 2-sample t-test using a 2-sided significance test level of 0.05 and common 
standard deviation (SD) of 17.8%.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 72 of 100
11.3.
Analysis Sets
For purposes of analysis, the following analysis sets are defined (Table 9).
Table 9:
Analysis Sets
Analysis Set
Description
Randomized Set
The Randomized Set includes all randomized subjects, irrespective of whether they 
received any study drug.
Full Analysis Set (FAS)
The FAS includes all randomized subjects with a SALT I < 95 at Baseline, 
irrespective of whether they received any study drug.
Modified Full Analysis 
Set (mFAS)
The mFAS consists of all randomized subjects with a SALT I < 95 at Baseline who 
received at least 1 dose of study drug, have a Baseline measurement, and have at least 
1 post-randomization measurement. The mFAS is endpoint specific, therefore 
subjects included in the analysis set for 1 endpoint may differ from another endpoint, 
based on the Baseline and post-Baseline data.
Per Protocol Set
The Per Protocol Set consists of all subjects in the FAS who adhere to the protocol. 
The Per Protocol Set will be used in sensitivity analyses of the primary and key 
secondary endpoints to evaluate the influence of major protocol violators and 
protocol deviators on the primary results. Subjects may be excluded from this set if 
they violate the eligibility criteria or significantly deviate from the study plan. 
Specific reasons for warranting exclusion from this set will be documented prior to 
database lock and may include, but are not limited to, study drug noncompliance, 
receiving incorrect study drug, missing more than a defined number of visits while 
still on study, and chronic prohibited medication use while on study drug. The list of 
major protocol violations and protocol deviations that exclude subjects from the Per 
Protocol Set will be finalized prior to database lock.
Safety Set
The Safety Set consists of all randomized subjects who received at least 1 dose of 
study drug.
Pharmacokinetic Set
The Pharmacokinetic Set consists of all randomized subjects who received at least 
1 dose of etrasimod and with at least 1 postdose PK measurement.
11.4.
Handling of Dropouts and Missing Data
All available data will be presented in descriptive summaries and included in statistical models 
as appropriate. All subjects who are included in the full analysis set (FAS), modified FAS 
(mFAS), Safety Set, or Pharmacokinetic Set will be included in analyses, and their missing data 
will not be imputed. For dichotomous efficacy endpoints, subjects with missing data for any 
reason will be considered as a ‘non-responder’ or ‘failure’.
11.5.
Demographics and Baseline Characteristics
Demographics and Baseline characteristics will be summarized for the FAS and Safety Set. The 
summaries of data will include frequencies and percentages for categorical variables and mean, 
SD, median, minimum, and maximum for continuous variables.
11.6.
Efficacy Analyses
The primary and secondary endpoints will be analyzed using the FAS. The exploratory endpoints 
will be analyzed using the FAS and the Randomized Set. Other important statistical 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 73 of 100
considerations, such as missing data imputation strategies, sensitivity analyses, and subgroup 
analyses will be described in the SAP.
The primary endpoint of percent change from Baseline to Week 24 in SALT I will be analyzed 
with a mixed-effects model repeated measures (MMRM) model. The MMRM model will include 
treatment group, visit, and interaction of treatment-by-visit as factors, and disease duration and 
Baseline SALT I score as covariates. An unstructured covariance matrix will be specified for the 
MMRM model. Least squares (LS) means at each visit and LS mean differences between 
treatment groups (each of the active arms versus placebo only) with p-values and corresponding 
95% confidence intervals (CIs) will be reported. This method will also be applied to other 
score-based or continuous measures.
Proportion-based secondary endpoints at Week 24 will be analyzed using the 
Cochran-Mantel-Haenszel test method adjusted for the randomization stratification factor
SALT I (< 50, ≥50) at Baseline. Subjects with missing data for any reason will be considered as 
‘non-responder’ or ‘failure’ for the endpoint. The number and percentage of subjects achieving 
the goal and the difference in proportion between treatment groups achieving the goal, along 
with p-values and the 95% CIs, will be reported.
11.6.1.
Endpoint Definitions
Efficacy will be assessed by changes in AA as measured by SALT I score. PROs will be 
assessed using the AASIS and AA-QLI. The definitions used to assess efficacy outcomes are 
described in Section 11.6.1.1 to Section 11.6.1.4.
11.6.1.1.
Primary Efficacy Endpoint

Percent change from Baseline in SALT I at Week 24
11.6.1.2.
Secondary Efficacy Endpoints

Change from Baseline in SALT I at Week 24

Proportion of subjects achieving a ≥30% improvement from Baseline in SALT I at 
Week 24

Proportion of subjects achieving a ≥50% improvement from Baseline in SALT I at 
Week 24

Proportion of subjects achieving a ≥75% improvement from Baseline in SALT I at 
Week 24
11.6.1.3.
Exploratory Efficacy Endpoints

Percent change from Baseline in SALT I over time

Change from Baseline in SALT I over time

Proportion of subjects achieving a ≥30% improvement from Baseline in SALT I over 
time

Proportion of subjects achieving a ≥50% improvement from Baseline in SALT I over 
time


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 74 of 100

Proportion of subjects achieving a ≥75% improvement from Baseline in SALT I over 
time

Proportion of subjects achieving a ≥90% improvement from Baseline in SALT I at 
Week 24

Change from Baseline in AASIS at Week 24

Change from Baseline in AA-QLI at Week 24

Change from Baseline in serum biomarkers at Week 24

Percent change from Baseline in peripheral lymphocyte counts at Week 24

Percent change from Baseline in SALT I at Week 24 as assessed by blinded central 
review

Change from Baseline in SALT I at Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥30% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥50% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥75% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review

Proportion of subjects achieving a ≥90% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review
11.6.1.4.
Efficacy Assessments During the Open-Label Extension Period
These efficacy outcomes will be measured at scheduled visits up to 52 weeks: SALT I; 
peripheral lymphocyte counts; AASIS; AA-QLI; serum biomarkers; and photographs of the full 
scalp for all subjects, of the eyebrows and eyelashes for subjects who have hair loss in these 
areas at Day 1/Baseline, and of the fingernails for subjects with fingernail changes related to AA 
(eg, pitting, white spots, and roughness) at Day 1/Baseline.
11.6.2.
Pharmacokinetics

Plasma concentrations of etrasimod will be assessed from samples collected prior to 
dosing and 4 hours (± 15 minutes) postdose (after ECG) on Day 1 and Week 24.

Plasma concentrations of etrasimod will be assessed from samples collected prior to 
dosing (trough; within 60 minutes prior to dosing) at Weeks 1 (Cohort 2 only), 2, 4, 8, 
12, 16, 20, 25, 28, 36, and 44.

Plasma concentrations of etrasimod will be assessed from samples collected anytime 
at Week 52 or at the ET visit, and the follow-up visits, as applicable.
The Pharmacokinetic Set will be used to analyze plasma levels. A descriptive summary of 
observed plasma concentration will be displayed by time and by treatment group.
Full details of PK analysis will be provided in the SAP.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 75 of 100
11.6.3.
Subgroup Analyses
The following major subgroup analyses for the primary and secondary efficacy endpoints will be 
performed to explore whether the treatment effects are consistent across different subgroups: 

Sex (male, female)

Race (white, non-white)

Age (≤ or > median)

Baseline SALT I score (≤ or > median)

Baseline SALT I score (< 50 or ≤50)
The SAP will provide a complete list and definition of the subgroups and analysis methods.
11.7.
Testing Strategy
No formal testing strategy or adjustments of the Type I error will be employed for the primary 
and secondary efficacy endpoints. Estimates and CIs for treatment groups and from treatment 
comparisons will be reported in an exploratory manner.
11.8.
Interim Analysis
No formal interim analysis of efficacy is planned. Periodic blinded assessments of the 
assumption regarding the SD of the percent change in SALT I from Baseline to Week 24 will be 
conducted. The planned sample size will not be reduced as a result of the SD assessments.
11.9.
Safety Analyses
A detailed description of all safety analyses will be provided in the SAP.
11.9.1.
Safety Endpoints

Incidence and severity of AEs

Incidence and severity of laboratory abnormalities and change from Baseline in 
laboratory values (to include hematology, serum chemistry, coagulation, and 
urinalysis)

Incidence of clinically significant vital sign abnormalities and changes from Baseline
(may include 4 hours postdose on Day 1 and Week 24)

ECGs

Holter Monitoring

Physical examination findings
11.9.2.
Adverse Events
All AEs will be coded using the Medical Dictionary for Regulatory Activities.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 76 of 100
For each treatment group, the proportion of subjects with treatment-emergent adverse events 
(TEAEs) will be summarized overall, by severity, and by relationship to study drug. SAEs will 
also be summarized by treatment group. A TEAE is defined as:

An AE that occurs after initiation of study drug that was not present at the time of 
treatment start.

An AE that increases in severity after the initiation of study drug, if the event was 
present at the time of treatment start.
Any AE occurring before the first dose of study drug will be summarized separately.
11.9.3.
Extent of Exposure
The duration of time on study and time on study drug will be summarized for each treatment
using descriptive statistics. The number of subjects on study drug for certain time intervals will 
also be summarized. The total subject-years on study drug and total subject-years on study will 
also be included in this summary.
11.9.4.
Clinical Laboratory Parameters
Laboratory parameters will be summarized by treatment group at each scheduled assessment
timepoint using descriptive statistics. Associated laboratory parameters such as hepatic enzymes, 
renal function, and hematology values will be grouped and presented together.
Individual subject values will be listed and values outside of the standard reference range will be
noted. Shift tables and analyses of changes from Baseline will be produced.
11.9.5.
Holter Recording
Holter recording will principally be used for determination of HR and potential arrhythmias (eg,
pauses, AV block). Point estimates will be obtained at specified times. The central Holter 
laboratory may determine additional parameters or perform additional analyses from digitized 
Holter monitor recordings including but not limited to those indicated by the initial analyses or 
safety events. Additional information is provided in the Holter manual. 
11.9.6.
Electrocardiograms and Vital Signs
Individual ECG values will be listed by visit and summarized using descriptive statistics. 
Parameters to be provided for each ECG are HR and the following intervals: RR, PR, QRS, QT, 
QTc, and QTcF. Post-Baseline ECGs for each subject will be compared with the Baseline ECG. 
Any clinically significant change from Baseline may be recorded as an AE if deemed appropriate 
by the Investigator, or the Investigator in consultation with the Sponsor or delegate. Outlier 
analysis will be performed on all subjects with QTcF values > 500 ms or change from Baseline
> 60 ms in the absence of Baseline ECG abnormalities that preclude accurate surface ECG 
assessment of ventricular repolarization (eg, bundle branch block).
Descriptive statistics for vital signs (BP, HR, respirations, and body temperature) will be 
presented by treatment group.
The change from Baseline for each of the vital signs and ECG parameters will be summarized. 
Incidence of abnormal vital signs parameters and outlier ECG results will be tabulated.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 77 of 100
11.9.7.
Physical Examination
Clinically significant physical examination abnormalities will be included in medical history or 
recorded and summarized as an AE.
11.10.
Statistical Considerations for the Open-Label Extension Period
The objectives of the Open-Label Extension Period are to evaluate long-term safety and efficacy 
up to 52 weeks. 
All safety outcomes will be analyzed using the Safety Set in the Open-Label Extension, which 
includes all subjects who received at least 1 dose of etrasimod in the Open-Label Extension 
Period.
Baseline for the Open-Label Extension Period is defined as the last measurement prior to the first
etrasimod dose started at Week 24.
Safety analyses will follow general considerations in Section 11.9.2 to Section 11.9.7 with the 
following exceptions:

One treatment group in the Open-Label Extension Period and 3 treatment subgroups 
in the Double-Blind Treatment Period will be analyzed

Change from Baseline will be analyzed using change from Double-Blind Treatment 
Period Baseline and change from Open-Label Extension Period Baseline
Only descriptive statistics will be presented for all efficacy assessments during the Open-Label 
Extension Period. Dichotomous response outcomes derived from specific scores will be 
assessed. Continuous variables will be summarized by visit using the number of observations, 
mean, SD, median, minimum, and maximum; and categorical variables will be summarized by 
visit using frequency counts and percentages.
12.
ETHICAL CONSIDERATIONS
12.1.
Ethical Conduct of the Study
This study shall be conducted in accordance with the ethical principles that have their origin in 
the Declaration of Helsinki and that are consistent with Good Clinical Practice (GCP), ICH 
guidelines, and other applicable regulatory requirements (eg, local requirements), the study 
protocol, and where applicable, Sponsor and/or CRO SOPs.
12.2.
Institutional Review Board or Independent Ethics Committee 
Approval
Before initiating a study, the Investigator must have written and dated approval from the 
IRB/IEC for the study protocol, written ICF, subject recruitment materials and procedures (eg, 
advertisements or websites), and any other written information to be provided to subjects. 
Approval from the committee must be documented in a letter to the Investigator specifying the 
protocol number, protocol version, documents reviewed, and the date on which the committee 
granted the approval.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 78 of 100
All documents subject to review during the study, including any modifications made to the 
protocol after receipt of IRB/IEC approval, must also be submitted to the committee for approval 
prior to implementation. The Investigator must also provide periodic reports as required and 
promptly report important safety information (eg, SAEs) and protocol violations, as appropriate, 
to the IRB/IEC.
As part of the Investigator’s written application to the IRB/IEC, the Investigator should provide 
the committee with a current copy of the IB. If the IB is updated during the study, the 
Investigator should supply an updated copy to the committee.
12.3.
Informed Consent
The Investigator will fully inform the subject of all pertinent aspects of the study, including the 
approval of the study by the IRB/IEC. Before informed consent may be obtained, the 
Investigator should provide the subject ample time and opportunity to inquire about details of the 
study and to decide whether to participate.
Prior to a subject’s participation in the study, the IRB/IEC-approved ICF must be signed and 
personally dated by the subject and by the person who conducted the informed consent 
discussion.
The written ICF and any other written information to be provided to subjects should be revised 
whenever important new information becomes available that may be relevant to the subject’s 
consent. Any revised written ICF or study materials to be available and/or supplied to subjects 
should receive the IRB/IEC’s approval in advance of use. The subject will be informed in a 
timely manner if new information becomes available that may be relevant to the subject’s 
willingness to continue participation in the study. The communication of this information should 
be documented.
12.4.
Confidentiality
All information generated in this study is considered highly confidential and must not be 
disclosed to any person or entity not directly involved with the study unless prior written consent 
is provided from the Sponsor.
Prior to study participation, the Investigator shall inform the subject that the monitor(s), 
auditor(s), IRB/IEC, and the regulatory authorities will be granted direct access to the subject’s 
original medical records for verification of clinical study procedures and/or data, and that, by 
signing a written ICF, the subject is authorizing such access.
In addition, prior to study participation, the subject must be informed that the records identifying 
the subject will not be made publicly available; if the results of the study are published, the 
subject’s identity will remain confidential.
12.5.
Protocol Compliance
The Investigator/institution will conduct the study in compliance with the protocol agreed to by 
the Sponsor and regulatory authorities (if applicable) and that was approved by the IRB/IEC. The 
Investigator/institution and the Sponsor should sign the protocol, or an alternative contract, to 
confirm agreement.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 79 of 100
The Investigator should not implement any deviation from, or changes to, the protocol without 
agreement by the Sponsor and prior review and documented approval from the IRB/IEC of an 
amendment, except where necessary to eliminate immediate hazard(s) to study subjects or when 
the change involves only logistical or administrative aspects of the study (eg, change in monitor, 
change of telephone number).
When an important deviation from the protocol is deemed necessary for an individual subject, 
the Investigator must contact the Medical Monitor for the study. Such contact must be made as 
soon as possible to permit a review by the Sponsor to determine the impact of the deviation on 
the subject’s participation and/or the assessment of safety or efficacy in the study. Any 
significant protocol deviations affecting subject eligibility and/or safety must be reported by 
Investigator or site delegate to the IRB/IEC and regulatory authorities, as applicable, prior to 
implementation.
The Investigator should document and explain any deviation from the approved protocol.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 80 of 100
13.
QUALITY CONTROL AND QUALITY ASSURANCE
Quality assurance and quality control systems shall be implemented and maintained with written 
SOPs to ensure that the study is conducted, and data are generated, documented (recorded), and 
reported in compliance with the protocol, GCP, and the applicable regulatory requirement(s). 
Quality control shall be applied to each stage of data handling to ensure that all data are reliable 
and have been processed correctly.
An agreement must be secured from all involved parties to ensure direct access to all 
study-related sites, source documents, and reports for the purpose of monitoring and auditing by 
the Sponsor and inspection by regulatory authorities.
13.1.
Training of Study Site Personnel
Prior to study activities being initiated at the study site, the Sponsor or designee will train study 
site personnel on the protocol and applicable procedures. Training should be documented.
Note: If new study site personnel are assigned to the study after the initial training, study sites 
should contact the study monitor to coordinate training. Qualified study personnel may conduct 
training, as appropriate. Training of new study personnel should also be documented.
13.2.
Monitoring
Study site monitoring is conducted to ensure the study is progressing as expected, the rights and 
well-being of human subjects are protected, the reported study data are accurate, complete, and 
verifiable, and the conduct of the study is in compliance with the currently approved protocol, 
with GCP and with applicable regulatory requirements. Protocol deviations identified will be 
documented.
Details of study site monitoring are documented in the study Clinical Monitoring Plan (CMP) or 
similar document. The CMP describes in detail who will conduct the monitoring, at what 
frequency monitoring will be done, at what level of detail monitoring will be performed (eg, 
targeted and/or risk based), and the distribution of monitoring reports. Monitoring may include a 
study site selection visit, which may be conducted in person or via communication media (eg, 
teleconference, online meeting) or may be waived in accordance with policy and procedures 
being followed for the study, if appropriate. Monitoring will include a study site initiation visit, 
interim monitoring visit(s), and a study site closeout visit. An interim monitoring visit may be 
combined with a closeout visit, if applicable.
13.3.
Audit
Audits of vendors contracted by Arena for this study may be performed. An audit of 1 or more 
participating study site may be performed independently of, and separately from, routine 
monitoring to evaluate clinical study conduct and compliance with the protocol, SOPs, GCP, and 
the applicable regulatory requirements.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 81 of 100
14.
DATA HANDLING AND RECORD KEEPING
14.1.
Data Management
14.1.1.
Case Report Forms
An eCRF must be completed for each subject screened/enrolled in this study. These forms will 
be used to transmit information collected during the study to the Sponsor and regulatory 
authorities, as applicable.
The documentation related to the validation of the eCRFs will be maintained in the trial master 
file (TMF). The TMF will be maintained by the CRO and the Sponsor.
The Investigator will document subject data in his/her own subject files. These subject files will 
serve as source data for the study. All eCRF data required by this protocol will be recorded by 
study site personnel. All data entered into the eCRF will be supported by source documentation.
The Investigator or an authorized member of the Investigator’s staff will make any necessary 
corrections to the eCRF. All changed information, including the date and person performing the 
corrections, will be available via the audit trail, which will be part of the electronic data capture 
system. For any correction, a reason for the alteration will be provided. The eCRFs will be 
reviewed periodically for completeness and acceptability by Sponsor personnel (or their 
representatives). The Sponsor (or their representatives) will also be allowed access to all source 
documents pertinent to the study in order to verify eCRF entries. The Investigator will review the 
eCRFs for completeness and accuracy and provide his or her electronic signature and date to the 
eCRFs as evidence thereof.
14.1.2.
Source Documents
Per regulatory requirements, the Investigator or designee will maintain accurate and up-to-date 
study documentation, including source documentation for each study subject. Source documents 
are defined as original documents, data, and records. These may include, but are not limited to, 
hospital records, clinical and office charts, laboratory data/information, subject diaries or 
evaluation checklists, pharmacy dispensing and other records, and recorded data from automated 
instruments (eg, ECGs, X-rays). Data collected during this study must be recorded on the 
appropriate source documents.
The Investigator(s)/institution(s) will permit study-related monitoring, audits, IRB/IEC review, 
and regulatory inspection(s) and will provide direct access to the source data.
14.2.
Study Documentation and Records Retention
The Investigator and study staff have the responsibility of maintaining a comprehensive and 
centralized filing system containing all study-related documentation. These files must be 
available for inspection by the Sponsor, representatives of the Sponsor, the IRB/IEC, and 
regulatory authorities (ie, FDA or international regulatory authorities) at any time, and should 
consist of the following elements:

Subject files: Containing the completed eCRFs (if applicable), supporting source 
documentation including medical records, laboratory data, and signed ICFs


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 82 of 100

Regulatory files: Containing the protocol with all amendments and Investigator 
signature pages, copies of all other regulatory documentation, all correspondence 
between the study site and the IRB/IEC and Sponsor, and drug accountability files, 
including a complete account of the receipt and disposition of the study drug
Records will be available for 2 years after the last marketing application approval, or if the 
application is not approved or never submitted, 2 years after the appropriate regulatory 
authorities have been notified of the discontinuation of clinical development of the 
investigational product. The Sponsor will provide written notification when it is appropriate for 
the Investigator to discard the study-specific documents referenced above.
During the record retention period, the Investigator or designee must inform the Sponsor or 
designee (eg, CRO) of the location of study documentation. During or after the record retention 
period, the Investigator or designee must inform and seek the Sponsor’s approval in the 
following circumstances:

If the custody of documentation will be transferred or moved to another location

If the Investigator is unable to retain documentation for the specified period
The Sponsor retains the right to utilize a document storage location/facility other than the one 
suggested by the Investigator.
14.3.
Clinical Study Report
Whether the study is completed or prematurely terminated, a clinical study report will be 
prepared and provided to the regulatory agencies according to applicable regulatory 
requirement(s).
14.4.
Disclosure of Study Results
The Sponsor will post the results of the study in a publicly accessible database in accordance 
with the applicable laws and regulations.
15.
RESPONSIBILITIES
15.1.
Investigator Responsibilities
The Investigator must comply with this protocol and the conduct of all study procedures. The 
Investigator will disclose to the Sponsor sufficient, accurate, financial information to allow the 
Sponsor to submit accurate disclosure statements to the US FDA per 21 Code of Federal 
Regulations (CFR) Part 54 (Financial Disclosure by Clinical Investigators). The Investigator is 
responsible for compliance with applicable sections of 21 CFR Part 312, Subpart D, 
(Responsibilities of Investigators) and other ICH GCP requirements, federal, and local laws, 
applicable to conducting drug studies.
The Investigator is responsible for ensuring an investigation is conducted according to the signed 
Investigator statement, the investigational plan, and applicable regulations; for protecting the 
rights, safety, and welfare of subjects under the Investigator’s care; and for the control of drugs 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 83 of 100
under investigation. An Investigator shall, in accordance with the provisions of 21 CFR Part 50, 
obtain the informed consent of each human subject to whom the drug is administered.
15.2.
Sponsor Responsibilities
The Sponsor is responsible for compliance with applicable sections of 21 CFR Part 312, 
Subpart D (Responsibilities of Sponsors). The Sponsor is responsible for selecting qualified 
Investigators, providing them with the information they need to conduct an investigation 
properly, ensuring proper monitoring of the investigation(s), ensuring the investigation(s) is 
conducted in accordance with the general investigational plan and protocols contained in the 
Investigational New Drug (IND) application, maintaining an effective IND with respect to the 
investigations, and ensuring the FDA and all participating Investigators are promptly informed of 
significant new adverse effects or risks with respect to the drug.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 84 of 100
16.
REFERENCES
AAD. COVID-19 vaccine administration guidance. American Academy of Dermatology 
Association. 
https://assets.ctfassets.net/1ny4yoiyrqia/2gTpp7G9GNSTtAHwPHNtbc/b23a62ab746ad4672158
a0c9633ca7aa/COVID_vaccine_administration_guidance_2-15-21.pdf. Published 2021. 
Accessed May 12, 2021.
Al Aboud AM, Zito PM. Alopecia. In: Treasure Island (FL): StatPearls Publishing LLC; 2019. 
On file at Arena.
Alkhalifah A, Alsantali A, Wang E, McElwee KJ, Shapiro J. Alopecia areata update: Part I. 
Clinical picture, histopathology, and pathogenesis. J Am Acad Dermatol. 2010a;62(2):177-188.
Alkhalifah A, Alsantali A, Wang E, McElwee KJ, Shapiro J. Alopecia areata update: Part II. 
Treatment. J Am Acad Dermatol. 2010b;62(2):191-202.
Basra MKA, Salek MS, Camilleri L, Sturkey R, Finlay AY. Determining the minimal clinically 
important difference and responsiveness of the Dermatology Life Quality Index (DLQI): Further 
data. Dermatology. 2015;230(1):27-33.
Brinkmann V, Billich A, Baumruker T, et al. Fingolimod (FTY720): Discovery and development 
of an oral drug to treat multiple sclerosis. Nat Rev Drug Discov. 2010;9(11):883-897. 
Cabell C. An extension study of APD334-003 in patients with moderately to severely active 
ulcerative colitis. San Diego, CA: Arena Pharmaceuticals, Inc.; July 30, 2019. Clinical Study 
Report APD334-005. On file at Arena.
Cabell CH. A Phase 2, randomized, double-blind, placebo-controlled, parallel group, multi-
center study to investigate the safety and efficacy of APD334 in patients with moderately to 
severely active ulcerative colitis. San Diego, CA: Arena Pharmaceuticals, Inc.; July 30, 2018. 
Clinical Study Report APD334-003. On file at Arena.
Camm J, Hla T, Bakshi R, Brinkmann V. Cardiac and vascular effects of fingolimod: 
Mechanistic basis and clinical implications. Am Heart J. 2014;168(5):632-644.
de Hollanda TR, Sodre CT, Brasil MA, Ramos-e-Silva M. Quality of life in alopecia areata: A 
case-control study. Int J Trichology. 2014;6(1):8-12.
Fabbrocini G, Panariello L, De Vita V, et al. Quality of life in alopecia areata: A disease-specific 
questionnaire. J Eur Acad Dermatol Venereol. 2013;27(3):e276-281.
FDA. Drug-induced liver injury: Premarketing clinical evaluation. U.S. Department of Health 
and Human Services, Food and Drug Administration. Guidance for Industry Web site. 
https://www.fda.gov/downloads/guidances/UCM174090.pdf. Published 2009. Accessed April 
25, 2019.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 85 of 100
Flockhart DA. Drug Interactions Flockhart TableTM. Indiana University, Department of 
Medicine, Clinical Pharmacology. https://drug-interactions.medicine.iu.edu/MainTable.aspx. 
Published 2019. Accessed November 15, 2019.
GILENYA. Fingolimod capsules, for oral use [Package Insert]. Novartis Pharmaceuticals 
Corporation. https://www.novartis.us/sites/www.novartis.us/files/gilenya.pdf. Published 2010. 
Accessed June 7, 2020.
Gilhar A, Etzioni A, Paus R. Alopecia areata. N Engl J Med. 2012;366(16):1515-1525.
Hanlon J. The fundamentals of alopecia areata. HealthPrep. 
https://healthprep.com/conditions/fundamentals-of-alopecia-
areata/?utm_source=bing&utm_medium=search&utm_campaign=328752041&utm_content=113
9094607077362&utm_term=alopecia%20areata&msclkid=b8a3ab0ecb5c1d240a42f6aa273b93d
5. Published 2019. Accessed October 24, 2019.
Hordinsky M, Donati A. Alopecia areata: An evidence-based treatment update. Am J Clin 
Dermatol. 2014;15(3):231-246.
Islam N, Leung PSC, Huntley AC, Gershwin ME. The autoimmune basis of alopecia areata: A 
comprehensive review. Autoimmun Rev. 2015;14(2):81-89.
Kappos L, Radue EW, O'Connor P, et al. A placebo-controlled trial of oral fingolimod in 
relapsing multiple sclerosis. N Engl J Med. 2010;362(5):387-401.
MacIntyre N, Crapo RO, Viegi G, et al. Standardisation of the single-breath determination of 
carbon monoxide uptake in the lung. Eur Respir J. 2005;26(4):720-735.
MacLean KJ, Tidman MJ. Alopecia areata: More than skin deep. Practitioner. 
2013;257(1764):29-32.
MAYZENT. Siponimod tablets, for oral use [Package Insert]. Novartis Pharmaceuticals 
Corporation. 
https://www.pharma.us.novartis.com/sites/www.pharma.us.novartis.com/files/mayzent.pdf. 
Published 2019. Accessed April, 2019.
Mendoza TR, Osei J, Duvic M. The utility and validity of the Alopecia Areata Symptom Impact 
Scale in measuring disease-related symptoms and their effect on functioning. J Investig 
Dermatol Symp Proc. 2018;19(1):S41-S46.
Mikhaylov D, Pavel A, Yao C, et al. A randomized placebo-controlled single-center pilot study 
of the safety and efficacy of apremilast in subjects with moderate-to-severe alopecia areata. Arch 
Dermatol Res. 2019;311(1):29-36.
Miller MR, Crapo R, Hankinson J, et al. General considerations for lung function testing. Eur 
Respir J. 2005a;26(1):153-161.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 86 of 100
Miller MR, Hankinson J, Brusasco V, et al. Standardisation of spirometry. Eur Respir J. 
2005b;26(2):319-338.
Nielsen OH, Li Y, Johansson-Lindbom B, Coskun M. Sphingosine-1-phosphate signaling in 
inflammatory bowel disease. Trends Mol Med. 2017;23(4):362-374.
Olsen EA, Hordinsky MK, Price VH, et al. Alopecia areata investigational assessment 
guidelines--Part II. J Am Acad Dermatol. 2004;51(3):440-447.
Petukhova L, Duvic M, Hordinsky M, et al. Genome-wide association study in alopecia areata 
implicates both innate and adaptive immunity. Nature. 2010;466(7302):113-117.
Peyrin-Biroulet L, Panes J, Chiorean MV, et al. Histologic remission and mucosal healing in a 
randomized, placebo-controlled, Phase 2 study of etrasimod in patients with moderately to 
severely active ulcerative colitis. Gastroenterology. 2019;156(6):S-217.
Plowman JE, Harland DP. The follicle cycle in brief. In: Plowman JE, ed. The Hair Fibre: 
Proteins, Structure and Development, Advances in Experimental Medicine and Biology. Vol 
1054. Springer Nature Singapore Pte Ltd.; 2018:15-17.
Renert-Yuval Y, Guttman-Yassky E. The changing landscape of alopecia areata: The therapeutic 
paradigm. Adv Ther. 2017;34(7):1594-1609.
Safavi KH, Muller SA, Suman VJ, Moshell AN, Melton LJ, 3rd. Incidence of alopecia areata in 
Olmsted County, Minnesota, 1975 through 1989. Mayo Clin Proc. 1995;70(7):628-633.
Sandborn WJ, Feagan BG, Wolf DC, et al. Ozanimod induction and maintenance treatment for 
ulcerative colitis. N Engl J Med. 2016;374(18):1754-1762.
Sandborn WJ, Peyrin-Biroulet L, Trokan L, et al. A randomized, double-blind, placebo-
controlled trial of a selective, oral sphingosine 1-phosphate (S1P) receptor modulator, etrasimod 
(APD334), in moderate to severe ulcerative colitis (UC): Results from the OASIS study. Am J 
Gastroenterol. 2018;113(Suppl):S327-S328.
Sandborn WJ, Peyrin-Biroulet L, Zhang J, et al. Efficacy and safety of etrasimod in a Phase 2 
randomized trial of patients with ulcerative colitis. Gastroenterology. 2020;158:550-561.
Sardesai VR, Prasad S, Agarwal TD. A study to evaluate the efficacy of various topical treatment 
modalities for alopecia areata. Int J Trichology. 2012;4(4):265-270.
Solomon JA. Development of uniform protocol for alopecia areata clinical trials. J Investig 
Dermatol Symp Proc. 2015;17(2):63-66.
Vaclavkova A, Chimenti S, Arenberger P, et al. Oral ponesimod in patients with chronic plaque 
psoriasis: A randomised, double-blind, placebo-controlled phase 2 trial. Lancet.
2014;384(9959):2036-2045.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 87 of 100
Vermeire S, Panes J, Chiorean M, et al. Long-term efficacy and safety of etrasimod for 
ulcerative colitis: Results from the open-label extension of the OASIS study. United European 
Gastroenterology Week (UEGW); October 19-23, 2019; Barcelona, Spain. On file at Arena.
Villasante Fricke AC, Miteva M. Epidemiology and burden of alopecia areata: A systematic 
review. Clin Cosmet Investig Dermatol. 2015;8:397-403.
Xing L, Dai Z, Jabbari A, et al. Alopecia areata is driven by cytotoxic T lymphocytes and is 
reversed by JAK inhibition. Nat Med. 2014;20(9):1043-1049.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 88 of 100
APPENDIX 1: SCHEDULE OF ASSESSMENTS – COHORT 1
Evaluation
Screening 
Period
Double-Blind Treatment Period
Open-Label Extension Perioda
Safety 
Follow-Up 
Periodb
Day
1
Week
2
Week
4
Week
8
Week
12
Week
16
Week
20
Week
24
Week
25
Week
28
Week
36
Week
44
Week
52/ETc
SFU 1
SFU 2
Window (days)
Days
28 to 1
± 3
± 3
± 3
± 3
± 3
± 3
± 3
± 1
± 3
± 3
± 3
± 3
± 3
± 3
Informed consent
X
I/E criteria
X
X
X
Demographics
X
Medical historyd
X
X
Social history,
AA history
X
Physical 
examination
Xe,f
Xg
Xg
Xg
Xg
Xg
Xg
Xg
Xe
Xe
Xg
Xg
Xg
Xe
Xe
Urine drug 
screenh
X
X
Pregnancy testi
X
X
X
X
X
X
X
X
X
X
X
X
X
Infectious disease 
serology
X
TB screening
X
Laboratory testsj
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Xk
X
Randomization
X
Vital signsl
X
Xm
X
X
X
X
X
X
Xm
X
X
X
X
X
X
X
12-lead ECG
X
Xn
X
Xn
X
X
X
X
Holter monitoro
X
X
Administer study 
drug in clinicp
X
X
X
X
X
X
X
X
X
X
X
X


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata 
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 89 of 100
Evaluation
Screening 
Period
Double-Blind Treatment Period
Open-Label Extension Perioda
Safety 
Follow-Up 
Periodb
Day
1
Week
2
Week
4
Week
8
Week
12
Week
16
Week
20
Week
24
Week
25
Week
28
Week
36
Week
44
Week
52/ETc
SFU 1
SFU 2
Window (days)
Days
28 to 1
± 3
± 3
± 3
± 3
± 3
± 3
± 3
± 1
± 3
± 3
± 3
± 3
± 3
± 3
Dispense study 
drug
X
X
X
X
X
X
X
X
X
X
X
Drug
accountability
X
X
X
X
X
X
X
X
X
X
X
X
AE assessment
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Concomitant 
medication
assessment
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
PFT, DLCOq
X
X
X
X
Ophthalmoscopy 
and OCTq
X
X
X
X
SALT I
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Photographyr
X
X
X
X
X
X
X
Pharmacokineticss
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Biomarkers (from 
serum sample)
X
X
X
X
PRO 
questionnairest
X
X
X
X
X
X
a Subjects who entered the Open-Label Extension Period (Week 24 visit) before implementation of Amendments 2.0 and 2.1 will transition to 3 mg once daily at their next study 
visit. Subjects entering the Open-Label Extension Period (Week 24 visit) after implementation of Amendments 2.0 and 2.1 will receive etrasimod 2 mg from the Week 24 visit to 
the Week 25 visit and will transition to etrasimod 3 mg at the Week 25 visit. Of note, subjects already in the Open-Label Extension Period at the time of Amendments 2.0 and 
2.1 implementation may be allowed to continue on etrasimod 2 mg at the Investigator’s discretion provided that they have achieved a SALT I score ≤20.
b Subjects who complete the Open-Label Extension Period will return for SFU Visits 2 weeks and 4 weeks (± 3 days) after the last dose of study drug (which corresponds to 
Week 54 and Week 56, respectively). Subjects who terminate the study drug early in the Double-Blind Treatment Period or Open-Label Extension Period should have SFU 
Visits 2 weeks and 4 weeks (± 3 days) after the last dose of study drug.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata 
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 90 of 100
c If a subject ends study drug prior to Week 52, the ET visit assessments (ie, Week 52 assessments) should be performed within 1 week of the last dose of study drug. Whenever 
possible, subjects should continue in the study even if study drug has been discontinued.
d Includes a review of prior/ongoing medications.
e Complete examination, including a general inspection; cardiac examination; auscultation of the lungs; assessments of the skin, nails, head, eyes, ears, nose, throat, neck, thyroid,
lymph nodes, abdomen (liver, spleen, and lower abdomen), musculoskeletal, and body weight; and a neurological assessment.
f Height will be measured at Screening only.
g Symptom-directed examination.
h Includes amphetamines, barbiturates, cocaine metabolites, opiates, and benzodiazepines (Table 5).
i Only for females of childbearing potential. A monthly home pregnancy test in non-visit months (Weeks 32, 40, and 48) should be performed and any positive result immediately 
reported to the Investigator (Section 10.2.6). Serum pregnancy test at Screening and urine pregnancy test at all other visits where pregnancy testing is indicated.
j Includes serum chemistry, hematology (including coagulation), and urinalysis (Section 10.5.4). FSH at screening, only if needed to determine postmenopausal status. 
Investigators will be blinded to certain results during the Double-Blind Treatment Period. Refer to Section 10.5.7.2 and Table 5 for additional details.
k Hematology only. 
l Vital signs (resting HR, BP, body temperature, and respiratory rate) will be assessed at all indicated study visits with the subject in the seated position (Section 10.5.1).
m Performed prior to randomization for Day 1, predose for Week 24, and at Hours 1, 2, 3, and 4 (± 15 minutes) postdose as part of the first dose cardiac monitoring procedure for 
Day 1 and Week 24 (Section 10.5.7.4).
n Performed prior to randomization for Day 1, predose for Week 24, and at Hour 4 (± 15 minutes) postdose as part of the first dose cardiac monitoring procedure for Day 1 and 
Week 24 (Section 10.5.7.4).
o A Holter monitor will be placed on the subject at the study site and continuous Holter recording should begin approximately 15 minutes before in-clinic dosing. Subjects will be 
instructed how to remove and store the Holter monitor at Hour 8, record the time the device is removed, and to return the device for analysis at the next in-person study visit. 
Holter monitoring is required any time a subject escalates from 2 mg to 3 mg etrasimod (eg, subjects who enter the Open-Label Extension Period before implementation of 
Amendments 2.0 and 2.1 will transition to 3 mg once daily at their next study visit and will require Holter monitoring). Additional details are provided in Section 10.5.7.5.
p On study visit days, subjects should be instructed not to take their dose until after their study visit assessments have been completed. On study visit days when plasma samples 
for PK are being collected, subjects should wait to take their assigned dose at the study site after predose blood samples for PK have been drawn and after all predose 
assessments and procedures have been completed (Section 6.3). Of note, in case of dose interruption, an unscheduled visit may be planned to re-initiate study drug 
(Section 6.3.2).
q PFTs/DLCO and ophthalmoscopy/OCT may be conducted between Day 28 and Day 1 for the Screening Visit, within 14 days for the Week 24 Visit, and ± 10 days for all 
other post-screening visits (Section 10.5.5 and Section 10.5.6). Unscheduled PFT assessments should be performed for subjects reporting any respiratory symptoms (eg, dyspnea, 
shortness of breath, chest tightness, or wheezing), preferably on the same day (Section 10.5.5). PFT assessment may be required at the 4-Week Follow-Up Visit if PFT results at 
the last on-treatment study visit or ET Visit demonstrate a clinically significant decrease relative to Baseline. Unscheduled ophthalmoscopy/OCT assessments may also be 
performed, as clinically indicated, as part of the study visit assessment due to complaints of decreased vision or identification of worsening visual acuity (Section 10.5.7.7).
r Photographs of the full scalp will be taken for all subjects, of the eyebrows and eyelashes for subjects who have hair loss in these areas at Baseline, and of the fingernails for 
subjects with fingernail changes related to AA (eg, pitting, white spots, and roughness) at Baseline (Section 10.3.2).
s Collected predose (within 60 minutes prior to dosing) and at 4 hours (± 15 minutes) postdose (after ECG) on Day 1 and Week 24; predose (trough; within 60 minutes prior to 
dosing) at Weeks 2, 4, 8, 12, 16, 20, 25, 28, 36, and 44; anytime at Week 52 or at the ET visit, and the follow-up visits, as applicable; and if possible, at the time of any SAE, AE 
leading to study drug discontinuation, or AESI.
t PRO measures include AASIS and AA-QLI (Section 10.3.4).
AA, alopecia areata; AASIS, Alopecia Areata Symptom Impact Scale; AA-QLI, Alopecia Areata Quality of Life Index; AE, adverse event; AESI, adverse event of special interest; 
BP, blood pressure; DLCO, diffusing capacity of the lungs for carbon monoxide; ECG, electrocardiogram; ET, early termination; FSH, follicle-stimulating hormone; HR, heart 
rate; I/E, inclusion and exclusion criteria; OCT, optical coherence tomography; PFT, pulmonary function test; PK, pharmacokinetic; PRO, patient-reported outcome; SAE, serious 
adverse event; SALT I, Severity of Alopecia Tool I; SFU, Safety Follow-Up; TB, tuberculosis


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata 
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 91 of 100
APPENDIX 2:
SCHEDULE OF ASSESSMENTS – COHORT 2
Evaluation
Screening 
Period
Double-Blind Treatment Period
Open-Label Extension Period
Safety 
Follow-Up 
Perioda
Day
1
Week
1
Week
2
Week
4
Week
8
Week
12
Week
16
Week
20
Week
24
Week
25
Week
28
Week
36
Week
44
Week
52/ETb
SFU
1
SFU
2
Window (days)
Days
28 to 1
± 1
± 3
± 3
± 3
± 3
± 3
± 3
± 3
± 1
± 3
± 3
± 3
± 3
± 3
± 3
Informed consent
X
I/E criteria
X
X
X
Demographics
X
Medical historyc
X
X
Social history,
AA history
X
Physical 
examination
Xd,e
Xf
Xd
Xf
Xf
Xf
Xf
Xf
Xf
Xd
Xd
Xf
Xf
Xf
Xd
Xd
Urine drug 
screeng
X
X
Pregnancy testh
X
X
X
X
X
X
X
X
X
X
X
X
X
Infectious disease 
serology
X
TB screening
X
Laboratory testsi
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Xj
X
Randomization
X
Vital signsk
X
Xl
X
X
X
X
X
X
X
Xl
X
X
X
X
X
X
X
12-lead ECG
X
Xm
X
Xm
X
X
X
X
Holter monitorn
X
X
X
X


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata 
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 92 of 100
Evaluation
Screening 
Period
Double-Blind Treatment Period
Open-Label Extension Period
Safety 
Follow-Up 
Perioda
Day
1
Week
1
Week
2
Week
4
Week
8
Week
12
Week
16
Week
20
Week
24
Week
25
Week
28
Week
36
Week
44
Week
52/ETb
SFU
1
SFU
2
Window (days)
Days
28 to 1
± 1
± 3
± 3
± 3
± 3
± 3
± 3
± 3
± 1
± 3
± 3
± 3
± 3
± 3
± 3
Administer study 
drug in clinico
X
X
X
X
X
X
X
X
X
X
X
X
X
Dispense study 
drug
X
X
X
X
X
X
X
X
X
X
X
X
Drug
accountability
X
X
X
X
X
X
X
X
X
X
X
X
X
AE assessment
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Concomitant 
medication
assessment
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
PFT, DLCOp
X
X
X
X
Ophthalmoscopy 
and OCTp
X
X
X
X
SALT I
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Photographyq
X
X
X
X
X
X
X
X
Pharmacokineticsr
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
X
Biomarkers (from 
serum sample)
X
X
X
X
PRO 
questionnairess
X
X
X
X
X
X
a Subjects who complete the Open-Label Extension Period will return for SFU Visits 2 weeks and 4 weeks (± 3 days) after the last dose of study drug (which corresponds to 
Week 54 and Week 56, respectively). Subjects who terminate the study drug early in the Double-Blind Treatment Period or Open-Label Extension Period should have SFU 
Visits 2 weeks and 4 weeks (± 3 days) after the last dose of study drug.
b If a subject ends study drug prior to Week 52, the ET visit assessments (ie, Week 52 assessments) should be performed within 1 week of the last dose of study drug. Whenever 
possible, subjects should continue in the study even if study drug has been discontinued.


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata 
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 93 of 100
c Includes a review of prior/ongoing medications.
d Complete examination, including a general inspection; cardiac examination; auscultation of the lungs; assessments of the skin, nails, head, eyes, ears, nose, throat, neck, thyroid, 
lymph nodes, abdomen (liver, spleen, and lower abdomen), musculoskeletal, and body weight; and a neurological assessment.
e Height will be measured at Screening only.
f Symptom-directed examination.
g Includes amphetamines, barbiturates, cocaine metabolites, opiates, and benzodiazepines (Table 5).
h Only for females of childbearing potential. A monthly home pregnancy test in non-visit months (Weeks 32, 40, and 48) should be performed and any positive result immediately 
reported to the Investigator (Section 10.2.6). Serum pregnancy test at Screening and urine pregnancy test at all other visits where pregnancy testing is indicated.
i Includes serum chemistry, hematology (including coagulation), and urinalysis (Section 10.5.4). FSH at screening, only if needed to determine postmenopausal status. 
Investigators will be blinded to certain results during the Double-Blind Treatment Period. Refer to Section 10.5.7.2 and Table 5 for additional details.
j Hematology only.
k Vital signs (resting HR, BP, body temperature, and respiratory rate) will be assessed at all indicated study visits with the subject in the seated position (Section 10.5.1).
l Performed prior to randomization for Day 1, predose for Week 24, and at Hours 1, 2, 3, and 4 (± 15 minutes) postdose as part of the first dose cardiac monitoring procedure for 
Day 1 and Week 24 (Section 10.5.7.4).
m Performed prior to randomization for Day 1, predose for Week 24, and at Hour 4 (± 15 minutes) postdose as part of the first dose cardiac monitoring procedure for Day 1 and 
Week 24 (Section 10.5.7.4).
n Holter monitoring is required at visits indicated and any time a subject escalates from 2 mg to 3 mg etrasimod. A Holter monitor will be placed on the subject at the study site 
and continuous Holter recording should begin approximately 15 minutes before in-clinic dosing. Subjects will be instructed how to remove and store the Holter monitor at 
Hour 8, record the time the device is removed, and to return the device for analysis at the next in-person study visit. Additional details are provided in Section 10.5.7.5.
o On study visit days, subjects should be instructed not to take their dose until after their study visit assessments have been completed. On study visit days when plasma samples 
for PK are being collected, subjects should wait to take their assigned dose at the study site after predose blood samples for PK have been drawn and after all predose 
assessments and procedures have been completed (Section 6.3). Of note, in case of dose interruption, an unscheduled visit may be planned to re-initiate study drug 
(Section 6.3.2).
p PFTs/DLCO and ophthalmoscopy/OCT may be conducted between Day 28 and Day 1 for the Screening Visit, within 14 days for the Week 24 Visit, and ± 10 days for all 
other post-screening visits (Section 10.5.5 and Section 10.5.6). Unscheduled PFT assessments should be performed for subjects reporting any respiratory symptoms (eg, dyspnea, 
shortness of breath, chest tightness, or wheezing), preferably on the same day (Section 10.5.5). PFT assessment may be required at the 4-Week Follow-Up Visit if PFT results at 
the last on-treatment study visit or ET Visit demonstrate a clinically significant decrease relative to Baseline. Unscheduled ophthalmoscopy/OCT assessments may also be 
performed, as clinically indicated, as part of the study visit assessment due to complaints of decreased vision or identification of worsening visual acuity (Section 10.5.7.7).
q Photographs of the full scalp will be taken for all subjects, of the eyebrows and eyelashes for subjects who have hair loss in these areas at Screening and Baseline, and of the 
fingernails for subjects with fingernail changes related to AA (eg, pitting, white spots, and roughness) at Baseline (Section 10.3.2).
r Collected predose (within 60 minutes prior to dosing) and at 4 hours (± 15 minutes) postdose (after ECG) on Day 1 and Week 24; predose (trough; within 60 minutes prior to 
dosing) at Weeks 1, 2, 4, 8, 12, 16, 20, 25, 28, 36, and 44; anytime at Week 52 or at the ET visit, and the follow-up visits, as applicable; and if possible, at the time of any SAE, 
AE leading to study drug discontinuation, or AESI.
s PRO measures include AASIS and AA-QLI (Section 10.3.4).
AA, alopecia areata; AASIS, Alopecia Areata Symptom Impact Scale; AA-QLI, Alopecia Areata Quality of Life Index; AE, adverse event; AESI, adverse event of special interest; 
BP, blood pressure; DLCO, diffusing capacity of the lungs for carbon monoxide; ECG, electrocardiogram; ET, early termination; FSH, follicle-stimulating hormone; HR, heart 
rate; I/E, inclusion and exclusion criteria; OCT, optical coherence tomography; PFT, pulmonary function test; PK, pharmacokinetic; PRO, patient-reported outcome; SAE, serious 
adverse event; SALT I, Severity of Alopecia Tool I; SFU, Safety Follow-Up; TB, tuberculosis


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 94 of 100
APPENDIX 3:
TUBERCULOSIS SCREENING
Review of the subject’s medical history must include specific questions about a history of 
tuberculosis (TB) infection or known occupational or other personal exposure to individuals with 
active TB. Subjects should be asked about past testing for TB, including results of 
interferon-gamma release assay (IGRA) (eg, QuantiFERON-TB or equivalent assay) or response 
to tuberculin skin test (TST), history of Bacillus Calmette–Guérin vaccination, and chest 
radiograph to rule out active pulmonary TB. Study sites may be required to use a TB screening 
checklist to perform the TB screen for subjects who reside in a high TB burden or high 
multi-drug resistance (MDR) TB burden country.
a.
Subjects without a history of TB infection and have a negative screening IGRA or 
TST result are eligible to enroll in the study
b. Subjects with a history of active TB, regardless of treatment status, are excluded from 
the study
c.
Subjects with a history of latent TB must have documentation of a TB prophylaxis 
treatment course or must have started a TB prophylaxis treatment course for 
≥2 weeks prior to randomization in order to qualify for enrollment. Active 
pulmonary TB must be ruled out. It is the responsibility of the Investigator to verify 
the adequacy of TB prophylaxis treatment and provide appropriate documentation,
including the work-up for active TB
d. Acceptable TB prophylaxis treatment for latent TB is defined according to local 
country guidelines. If no local country guidelines for the treatment of latent TB exist, 
WHO Guidelines must be followed (2018 WHO Updated and Consolidated 
Guidelines for Programmatic Management; 
http://www.who.int/tb/publications/2018/latent-tuberculosis-infection/en/)
e.
A subject with a history of latent TB infection, regardless of treatment status, who 
resides in a country identified by WHO as having a high MDR TB burden (eg, China, 
India, the Russian Federation, South Africa, Thailand, Ukraine) should be excluded 
from study participation due to the high risk of infection with MDR TB (2018 WHO 
Updated and Consolidated Guidelines for Programmatic Management; 
http://www.who.int/tb/publications/2018/latent-tuberculosis-infection/en/)
f.
IGRA and TST interpretation:

An indeterminant IGRA test result should be repeated and if the second IGRA test 
result is also indeterminate, the subject’s chest X-ray taken ≤6 months before 
screening shows no evidence of active/old TB, and the subject has no additional risk 
factors for TB, as determined by the Investigator or the infectious disease consultant 
or physician TB expert, the subject may be enrolled without treatment for latent TB

For subjects residing in a high TB burden or high MDR TB burden country, the 
chest computed tomography scan should be performed to rule out current/past 
pulmonary TB in the event that the chest X-ray reading is equivocal

If the IGRA is not considered a validated test or is not registered for use in the 
subject’s country, a negative TST result is required to rule out latent TB infection

A positive TST reaction is ≥10 mm of induration, or ≥5 mm of induration for 
subjects receiving > 15 mg/day of prednisone or its equivalent for any medical 


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 95 of 100
conditions and subjects residing in countries identified by WHO as a high TB burden 
country (eg, Brazil, China, India, the Russian Federation, South Africa, Thailand) or 
MDR TB burden country


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 96 of 100
APPENDIX 4:
GRADING OF CLINICAL AND LABORATORY
ADVERSE EVENTS
All clinical and clinically significant laboratory abnormalities will be graded according to the 
CTCAE Scale for Severity of Adverse Events and Laboratory Abnormalities. 
Examples of CTCAE terms and grading are provided for clinical adverse events (AEs) in
Table 10 and for laboratory abnormalities in Table 11.
Table 10:
Example of CTCAE Terms and Grading for Clinical Adverse Events
Respiratory, thoracic and mediastinal disorders
CTCAE Term
Grade 1
Grade 2
Grade 3
Grade 4
Grade 5
Cough
Mild symptoms; 
nonprescription 
intervention 
indicated
Moderate 
symptoms, medical 
intervention 
indicated; limiting 
instrumental ADL
Severe symptoms; 
limiting self-care 
ADL
-
-
Definition: A disorder characterized by sudden, often repetitive, spasmodic contraction of the thoracic cavity, resulting in 
violent release of air from the lungs and usually accompanied by a distinctive sound.
Dyspnea
Shortness of breath 
with moderate 
exertion
Shortness of breath 
with minimal
exertion; limiting 
instrumental ADL
Shortness of breath 
at rest; limiting self-
care ADL
Life-threatening 
consequences; 
urgent intervention 
indicated
Death
Definition: A disorder characterized by an uncomfortable sensation of difficulty breathing.
Wheezing
Detectable airway 
noise with minimal 
symptoms
Moderate 
symptoms; medical 
intervention 
indicated; limiting 
instrumental ADL
Severe respiratory 
symptoms limiting 
self-care ADL; 
oxygen therapy or 
hospitalization 
indicated
Life-threatening 
consequences; 
urgent intervention 
indicated
Death
Definition: A disorder characterized by a high-pitched, whistling sound during breathing. It results from the narrowing or 
obstruction of the respiratory airways.
Dizziness
Mild unsteadiness 
or sensation of 
movement
Moderate 
unsteadiness or 
sensation of 
movement; limiting 
instrumental ADL
Severe unsteadiness 
or sensation of 
movement; limiting 
self-care ADL
-
-
Definition: A disorder characterized by a disturbing sensation of lightheadedness, unsteadiness, giddiness, spinning or 
rocking.
Blurred vision
Intervention not 
indicated
Symptomatic; 
moderate decrease 
in visual acuity 
(best corrected 
visual acuity 20/40 
and better or 3 lines 
or less decreased 
vision from known 
Baseline); limiting 
instrumental ADL
Symptomatic with 
marked decrease in 
visual acuity (best 
corrected visual 
acuity worse than 
20/40 or more than 
3 lines of decreased 
vision from known 
Baseline, up to 
20/200); limiting 
self-care ADL
Best corrected 
visual acuity of 
20/200 or worse in 
the affected eye
-
Definition: A disorder characterized by visual perception of unclear or fuzzy images.
ADL, activities of daily life; CTCAE, Common Terminology Criteria for Adverse Events


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 97 of 100
Table 11:
Example of CTCAE Terms and Grading for Laboratory Abnormalities and 
Pulmonary Functions Tests
Investigations
CTCAE Term
Grade 1
Grade 2
Grade 3
Grade 4
Grade 5
Alanine 
aminotransferase 
increased
>ULN - 3.0 × ULN 
if Baseline was 
normal; 1.5 - 3.0 ×
Baseline if Baseline
was abnormal
>3.0 - 5.0 × ULN if 
Baseline was 
normal; >3.0 - 5.0 ×
Baseline if Baseline
was abnormal
>5.0 - 20.0 × ULN if 
Baseline was 
normal; >5.0 - 20.0 
× Baseline if 
Baseline was 
abnormal
>20.0 × ULN if 
Baseline was 
normal; >20.0 ×
Baseline if Baseline
was abnormal
-
Definition: A finding based on laboratory test results that indicate an increase in the level of alanine aminotransferase (ALT 
or SGPT) in the blood specimen.
Navigational Note: Also consider Hepatobiliary disorders: Hepatic failure
Aspartate 
aminotransferase 
increased
>ULN - 3.0 × ULN 
if Baseline was 
normal; 1.5 - 3.0 ×
Baseline if Baseline
was abnormal
>3.0 - 5.0 × ULN if 
Baseline was 
normal; >3.0 - 5.0 ×
Baseline if Baseline
was abnormal
>5.0 - 20.0 × ULN if 
Baseline was 
normal; >5.0 - 20.0 
× Baseline if 
Baseline was 
abnormal
>20.0 × ULN if 
Baseline was 
normal; >20.0 ×
Baseline if Baseline
was abnormal
-
Definition: A finding based on laboratory test results that indicate an increase in the level of aspartate aminotransferase (AST 
or SGOT) in a blood specimen.
Navigational Note: Also consider Hepatobiliary disorders: Hepatic failure
Forced expiratory 
volume decreased
FEV1% (percentages 
of observed FEV1
and FVC related to 
their respective 
predicted values) 99 
- 70% predicted
FEV1 60% - 69%
50% - 59%
≤49%
-
Definition: A finding based on test results that indicate a relative decrease in the fraction of the forced vital capacity that is 
exhaled in a specific number of seconds.
Navigational Note: Also consider Respiratory, thoracic and mediastinal disorders: Respiratory failure or Dyspnea
Vital capacity 
abnormal
90% - 75% of 
predicted value
< 75% - 50% of 
predicted value; 
limiting 
instrumental ADL
< 50% of predicted 
value; limiting 
self-care ADL
-
-
Definition: A finding based on pulmonary function test results that indicate an abnormal vital capacity (amount of exhaled 
after a maximum inhalation) when compared to the predicted value.
Navigational Note: Also consider Investigations: Forced Expiratory Volume; Respiratory, thoracic and mediastinal disorders: 
Respiratory failure or Dyspnea
Carbon monoxide 
diffusing capacity 
decreased
3 - 5 units below 
LLN; for follow-up, 
a decrease of 3 - 5 
units (ml/min/mm
Hg) below the 
Baseline value; 
asymptomatic and 
intervention not 
indicated
6 - 8 units below 
LLN; for follow-up, 
an asymptomatic 
decrease of > 5 -
8 units (ml/min/mm 
Hg) below the 
Baseline value; 
symptomatic and 
intervention not 
indicated
Asymptomatic 
decrease of > 8 units 
drop; > 5 units drop 
along with the 
presence of 
pulmonary 
symptoms 
(eg, > Grade 2 
hypoxia or > Grade 
2 dyspnea); 
intervention 
indicated
-
-
Definition: A finding based on lung function test results that indicate a decrease in the lung capacity to absorb carbon 
monoxide. 
Navigational Note: Also consider Respiratory, thoracic and mediastinal disorders: Respiratory failure or Dyspnea
ADL, activities of daily life; ALT, Alanine aminotransferase; AST, Aspartate aminotransferase; FEV1, forced expiratory volume 
at 1 second; FVC, forced vital capacity; LLN, lower limit of normal; SGOT, serum glutamic-oxaloacetic transaminase; SGPT, 
serum glutamic-pyruvic transaminase; ULN, upper limit of normal


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 98 of 100
APPENDIX 5:
GUIDANCE FOR THE MANAGEMENT OF CLINICAL 
AND LABORATORY ADVERSE EVENTS
Clinical adverse events (AEs) and abnormal results of laboratory tests and safety assessments
considered to be an AE by the Investigator should be graded according to the severity scale of 
the CTCAE.
Uniform guidance for the management of AEs is provided in Figure 3.
Grade 3 and Grade 4 clinically significant laboratory abnormalities should be confirmed by 
repeated testing within 3 calendar days of receipt of results and before investigational product
discontinuation, unless such a delay is not consistent with good medical practice.
A clinically significant Grade 4 laboratory abnormality that is not confirmed by repeated testing 
should be managed according to the algorithm for the new AE grade.
Investigational product may be continued without dose interruption for a clinically non-
significant Grade 4 laboratory abnormality (eg, Grade 4 creatinine kinase after strenuous 
exercise, or triglyceride elevation that is non-fasting or that can be medically managed) or a 
clinical event considered unrelated to investigational product.
Any questions regarding adverse event management should be directed to the Medical Monitor.
CCI


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 99 of 100
APPENDIX 6:
GUIDANCE FOR THE ASSESSMENT OF POTENTIAL 
PROGRESSIVE MULTIFOCAL 
LEUKOENCEPHALOPATHY
If a subject exhibits signs and symptoms suspicious for progressive multifocal 
leukoencephalopathy (PML), the Investigator must interrupt study drug and perform a targeted 
neurologic examination to assess for signs of PML, which are diverse, progress over days to 
weeks, and may include progressive weakness on 1 side of the body or clumsiness of limbs or 
difficulty with walking or writing or fine motor skills, disturbance of vision, changes in thinking, 
memory and orientation leading to confusion and personality changes, paresthesia/anesthesia (of 
any domain: peripheral to central), dysarthria (expressive aphasia), and/or agnosia (receptive 
aphasia). Consultation with a local neurologist may be warranted, as presented in the PML case 
evaluation algorithm in Figure 4.
The Medical Monitor should be informed of any suspected cases of PML and, if needed, will 
facilitate Investigator/local neurologist consultation with PML medical experts on the 
independent adjudication committee.
CCI


Clinical Study Protocol
APD334-205
Etrasimod Versus Placebo in Subjects with Alopecia Areata
Amendment 2.0
Arena Pharmaceuticals, Inc.
Confidential
Page 100 of 100
APPENDIX 7:
INVESTIGATOR SIGNATURE
Protocol title:
A Multicenter, Randomized, Double-Blind, Placebo-Controlled,
24-Week Study, with a 28-Week Open-Label Extension, to Assess 
the Safety and Efficacy of Etrasimod in Subjects with 
Moderate-to-Severe Alopecia Areata
Protocol number:
APD334-205
I have read the protocol described above. I agree to comply with all applicable regulations and to 
conduct the study as described in the protocol.
Investigator Signature
Date
Investigator Name and Credentials - Printed
Institution Name - Printed

SAP_001.pdf: 
 
 
 
 
                  
 
Page 1 of 66 
 
Statistical Analysis Plan 
 
Study Title: 
A 
Multicenter, 
Randomized, 
Double-Blind, 
Placebo-Controlled, 24-Week Study, with a 28-Week 
Open-Label Extension, to Assess the Safety and Efficacy 
of Etrasimod in Subjects with Moderate-to-Severe 
Alopecia Areata 
 
Protocol Number and Version: 
APD334-205 (C5041008) Amendment 2.0 (United States) 
/ Amendment 2.1 (Canada), dated 25 May 2021 
Product: 
Etrasimod (APD334 [PF-07915503]) 
Sponsor: 
Arena Pharmaceuticals, Inc., a wholly owned subsidiary 
of Pfizer, Inc. 
 
6154 Nancy Ridge Drive 
San Diego, California  
USA, 92121 
Date: 
22-Feb-2023 
 
Version: 
Final v2.0 
 
Prepared by: 
 
 
 
 
 
 
 
 
 
 
 
CCI
PPD


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 2 of 66 
STATISTICAL ANALYSIS PLAN REVISION SUMMARY 
Version 
Version Date 
Author 
Summary of Changes  
Final 1.0  
30-Nov-2022 
 
Initial version 
Final 2.0 
22-Feb-2023 
 
Added Sections 11.6 and 11.7; Updated 
List of Abbreviations and Appendix 3. 
 
This statistical analysis plan will be reviewed and revised as needed. The most recent approved version will 
replace the previous version in place. 
 
 
PPD
PPD




Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 4 of 66 
TABLE OF CONTENT 
LIST OF TABLES ................................................................................................................................ 6 
ABBREVIATIONS ............................................................................................................................... 7 
1 
INTRODUCTION.................................................................................................................... 9 
2 
STUDY OBJECTIVES AND ENDPOINTS .......................................................................... 9 
2.1 
Objectives .......................................................................................................................... 9 
2.1.1 
Primary Objective ............................................................................9 
2.1.2 
Secondary Objectives.....................................................................10 
2.2 
Endpoints ........................................................................................................................ 10 
2.2.1 
Double-Blind Treatment Period .....................................................10 
2.2.2 
Open-Label Extension Period ........................................................12 
3 
STUDY DESIGN .................................................................................................................... 13 
3.1 
Design Overview ............................................................................................................. 13 
3.2 
Sample Size ..................................................................................................................... 16 
3.3 
Treatment Randomization and Unblinding Procedures ............................................ 16 
3.4 
Schedule of Events ......................................................................................................... 17 
4 
GENERAL CONSIDERATIONS ........................................................................................ 17 
4.1 
Baseline ........................................................................................................................... 17 
4.2 
Reference Start Date, Study Day, and Period Day...................................................... 18 
4.3 
Windowing Conventions ................................................................................................ 18 
4.4 
Descriptive Statistics ...................................................................................................... 19 
4.5 
Handling of Retests, Unscheduled Visits, and Early Termination Data ................... 20 
4.6 
Software Version ............................................................................................................ 20 
5 
STATISTICAL CONSIDERATIONS ................................................................................. 20 
5.1 
Analysis Sets ................................................................................................................... 20 
5.2 
Adjustments for Covariates .......................................................................................... 21 
5.3 
Handling of Dropouts or Missing Data ........................................................................ 22 
5.4 
Interim Analysis and Data Monitoring ........................................................................ 22 
5.5 
Multicenter Studies ........................................................................................................ 22 
5.6 
Multiple Comparisons/Multiplicity .............................................................................. 22 
5.7 
Examination of Subgroups ............................................................................................ 22 
6 
SUBJECTS CHARACTERISTICS ..................................................................................... 23 
6.1 
Demographic and other Baseline Characteristics ....................................................... 23 
6.2 
Surgical/Medical History and Alopecia Areata History ............................................. 24 
7 
SUBJECTS ACCOUNTABILITY ....................................................................................... 25 
7.1 
Disposition of Subjects ................................................................................................... 25 
7.2 
Protocol Deviations ........................................................................................................ 26 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 5 of 66 
8 
PRIOR AND CONCOMITANT MEDICATIONS ............................................................. 27 
9 
STUDY TREATMENT EXPOSURE AND TREATMENT COMPLIANCE ................. 27 
10 
EFFICACY ANALYSIS ........................................................................................................ 29 
10.1 
Primary Efficacy Endpoint ........................................................................................... 30 
10.2 
Secondary Efficacy Endpoints ...................................................................................... 33 
10.3 
Exploratory Efficacy Endpoints ................................................................................... 35 
10.4 
Other Efficacy Endpoints .............................................................................................. 37 
10.5 
Exploratory Efficacy Endpoints during the Open-Label Extension Period ............. 38 
10.6 
Summary of Efficacy Analyses ..................................................................................... 39 
11 
SAFETY ANALYSIS............................................................................................................. 42 
11.1 
Adverse Events ............................................................................................................... 42 
11.2 
Clinical Laboratory ........................................................................................................ 44 
11.3 
Vital Signs ....................................................................................................................... 45 
11.4 
Physical Examination .................................................................................................... 45 
11.5 
Electrocardiogram ......................................................................................................... 45 
11.6 
Pulmonary Function Test .............................................................................................. 46 
11.7 
Ophthalmoscopy and Optical Coherence Tomography ............................................. 47 
11.8 
Safety Analyses during the Open-Label Extension Period ......................................... 47 
12 
CHANGES TO THE ANALYSIS FROM THE PROTOCOL .......................................... 49 
13 
REFERENCES ....................................................................................................................... 50 
14 
APPENDICES ........................................................................................................................ 51 
Appendix 1 Output Conventions ............................................................................................... 51 
Appendix 2 Algorithm for Imputation of Start/End Date of Adverse Events and 
Prior/Concomitant Medications ................................................................................... 53 
Appendix 3 List of Tables, Listings, and Figures for the Primary and Final Analyses
 .......................................................................................................................................... 54 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 6 of 66 
LIST OF TABLES 
Table 1: Analysis Visit Windows 
19 
Table 2. Summary of Analysis Sets 
20 
Table 3. Summary of Efficacy Analyses 
39 
Table 4: Summary of Changes to the Analysis from the Protocol 
49 
 
 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 7 of 66 
ABBREVIATIONS 
AA 
Alopecia Areata 
AAIC 
finite-sample corrected Akaike Information Criteria 
AA-QLI 
Alopecia Areata Quality of Life Index 
AASIS 
Alopecia Areata Symptom Impact Scale 
AE 
Adverse Event 
ALC 
Absolute Lymphocyte Count 
AR (1) 
Autoregressive (order 1)  
ATC 
Anatomical Therapeutic Chemical 
ATS 
American Thoracic Society 
BMI 
Body Mass Index 
DB 
Double-Blind  
DLCO 
Diffusing Capacity of the Lungs for Carbon Monoxide 
bpm 
beats per minute 
CI 
Confidence Interval 
CMH 
Cochran-Mantel-Haenszel 
CRF 
Case Report Form 
CRO 
Contract Research Organization 
CTCAE 
Common Terminology Criteria for Adverse Events 
ECG 
Electrocardiogram 
eCRF  
electronic Case Report Form  
ET 
Early Termination 
FAS 
Full Analysis Set 
FEF 25-75 
Forced Expiratory Flow at 25% to 75% 
FEV1 
Forced Expiratory Volume at 1 second 
FVC 
Forced Vital Capacity 
FCS 
Fully Conditional Specification  
HR 
Heart Rate 
LOCF 
Last Observation Carried Forward  
MedDRA  
Medical Dictionary for Regulatory Activities  
mFAS 
modified Full Analysis Set 
MI 
Multiple Imputation  
MMRM 
Mixed Model Repeated Measures 
OC 
Observed Case 
OLE 
Open-Label Extension  
PDMP 
Protocol Deviations Management Plan 
PFT 
Pulmonary Function Test 
PK 
Pharmacokinetic 
PMM 
Predictive Mean Matching  
PP 
Per Protocol  
PPS 
Per Protocol Set 
PT 
Preferred Term 
QT 
QT interval 
QTcF 
Fridericia’s correction Formula for QT interval 
RR 
RR interval 
S1P 
Sphingosine 1-phosphate  


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 8 of 66 
SAE  
Serious Adverse Event  
SAF 
Safety Set 
SALT I 
Severity of Alopecia Tool I  
SAP  
Statistical Analysis Plan  
SAS 
Statistical Analysis System® 
SD 
Standard Deviation 
SFU 
Safety Follow-Up 
SOC 
System Organ Class 
TEAE 
Treatment Emergent Adverse Event  
TLC 
Total Lung Capacity 
TLF 
Tables, Listings, and Figures 
UN 
Unstructured 
WHO-DD  
World Health Organization Drug Dictionary  
WOCF 
Worst Observation Carried Forward  
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 9 of 66 
1 INTRODUCTION 
This Statistical Analysis Plan (SAP) describes the statistical rationale, methods, rules, and 
conventions to be used in the presentation and analysis of safety and efficacy for protocol APD334-
205. The analyses described in the SAP are based upon the protocol amendment 2.0 (United 
States)/ amendment 2.1 (Canada) dated 25-May-2021. 
This SAP provides additional details concerning the statistical analyses outlined in the protocol 
and reflects any changes to the protocol from any amendments. This plan will not repeat all the 
definitions given in the protocol but will provide further details of the summaries and analyses 
planned therein. 
This plan covers the analyses for: 1) the primary database lock after the completion of the Double-
Blind (DB) Treatment Period; 2) the final database lock after the completion of the Open-Label 
Extension (OLE) Period. The plan will be finalized before the time of primary database lock and 
treatment unblinding. Post hoc analyses may be performed and labeled as such on the output and 
may be included in the Clinical Study Report (CSR) and identified as such in the CSR. 
The mock table, listing, and figure (TLF) shells are prepared in a separate file based on this analysis 
plan. Upon approval of the SAP, some updates (including but not limited to titles, footnotes, 
headings and re-numbering of tables) on TLF shells are allowed without a SAP amendment as 
long as the updates within TLF shells do not conflict with the contents of the SAP. 
The statistical analysis of the following data will be described in separate SAPs: 
 Serum biomarkers data 
 Holter monitoring data  
 Pharmacokinetic data, including summary of plasma concentration, steady-state analysis, 
and exposure-response relationship analysis 
2 STUDY OBJECTIVES AND ENDPOINTS 
2.1 Objectives 
2.1.1 Primary Objective 
 To assess the safety and efficacy of etrasimod monotherapy (2 mg and 3 mg) in subjects 
with moderate-to-severe alopecia areata (AA) during the Double-Blind (DB) Treatment 
Period 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 10 of 66 
2.1.2 Secondary Objectives 
 To assess the long-term safety and efficacy of etrasimod monotherapy (2 mg and 3 mg) 
in subjects with moderate-to-severe AA 
 To determine the plasma concentration of etrasimod 2 mg and 3 mg in subjects with 
moderate-to-severe AA 
2.2 Endpoints 
2.2.1 Double-Blind Treatment Period 
2.2.1.1 Primary Efficacy Endpoint 
 Percent change from Baseline in Severity of Alopecia Tool I [SALT I] at Week 24 
2.2.1.2 Secondary Efficacy Endpoints 
 Change from Baseline in SALT I at Week 24 
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I at 
Week 24 
 Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I at 
Week 24 
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I at 
Week 24 
2.2.1.3 Exploratory Efficacy Endpoints 
 Percent change from Baseline in SALT I over time 
 Change from Baseline in SALT I over time 
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I over 
time 
 Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I over 
time 
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I over 
time 
 Proportion of subjects achieving a ≥ 90% improvement from Baseline in SALT I at 
Week 24 
 Change from Baseline in Alopecia Areata Symptom Impact Scale (AASIS) at Week 24 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 11 of 66 
 Change from Baseline in Alopecia Areata-Related Quality of Life Index (AA-QLI) at 
Week 24 
 Change from Baseline in serum biomarkers at Week 24* 
 Percent change from Baseline in peripheral lymphocyte counts at Week 24 
 Percent change from Baseline in SALT I at Week 24 as assessed by blinded central 
review  
 Change from Baseline in SALT I at Week 24 as assessed by blinded central review  
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review  
 Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review  
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review  
 Proportion of subjects achieving a ≥ 90% improvement from Baseline in SALT I at 
Week 24 as assessed by blinded central review 
* The statistical analysis to be performed for these endpoints will be described in a separated 
SAP (refer to Section 1) 
2.2.1.4 Safety Endpoints 
 Incidence and severity of adverse events (AEs) throughout the DB Treatment Period 
 Incidence and severity of laboratory abnormalities and change from Baseline in 
laboratory values (to include hematology, serum chemistry, coagulation, and 
urinalysis) at Weeks 1 (Cohort 2 only), 2, 4, 8, 12, 16, 20, and 24 
 Incidence of clinically significant vital sign abnormalities and changes from Baseline at 
1-, 2-, 3-, and 4-hour post-dose on Day 1 as well as Weeks 1 (Cohort 2 only), 2, 4, 8, 
12, 16, 20, and 24 
 Electrocardiograms (ECG) at 4-hour post-dose on Day 1 as well as Weeks 12 and 24 
 Holter Monitoring on Day 1 (Cohort 2 only) and Week 1 (Cohort 2 only)* 
 Physical examination findings (abnormalities will be recorded and summarized as 
medical history or AEs, as applicable) 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 12 of 66 
* The statistical analysis to be performed for these endpoints will be described in a separated 
SAP (refer to Section 1) 
2.2.1.5 Pharmacokinetic Endpoints 
 Plasma concentrations of etrasimod from samples collected prior to dosing and 4 hours 
(± 15 minutes) postdose (after ECG) on Day 1* 
 Plasma concentrations of etrasimod from samples collected prior to dosing (trough; within 
60 minutes prior to dosing) at Weeks 1 (Cohort 2 only), 2, 4, 8, 12, 16, 20, and 24 * 
* The statistical analysis to be performed for these endpoints will be described in a separated 
SAP (refer to Section 1) 
2.2.2 Open-Label Extension Period 
2.2.2.1 Exploratory Efficacy Endpoints 
 Change and percent change from Baseline in SALT I at Weeks 25, 28, 36, 44, and 52 
 Change from Baseline in AASIS at Weeks 36 and 52 
 Change from Baseline in AA-QLI at Weeks 36 and 52 
 Percent change from Baseline in peripheral lymphocyte counts at Weeks 25, 28, 36, 44, 
and 52 
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I at 
Weeks 25, 28, 36, 44, and 52  
 Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I at 
Weeks 25, 28, 36, 44, and 52  
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I at 
Weeks 25, 28, 36, 44, and 52  
 Proportion of subjects achieving a ≥ 90% improvement from Baseline in SALT I at 
Weeks 25, 28, 36, 44, and 52 
2.2.2.2 Safety Endpoints 
 Incidence and severity of AEs throughout the OLE Period 
 Incidence and severity of laboratory abnormalities and change from Baseline in 
laboratory values (to include hematology, serum chemistry, coagulation, and 
urinalysis) at Weeks 25, 28, 36, 44, and 52 
 Incidence of clinically significant vital sign abnormalities and changes from Baseline at 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 13 of 66 
1-, 2-, 3-, and 4-hour post-dose on Week 24 as well as Weeks 25, 28, 36, 44, and 52 
 ECG at 4-hour post-dose on Week 24 as well as Weeks 36, 44, and 52 
 Holter Monitoring at Weeks 24 and 25 as well as any time a subject escalates from 2 mg 
to 3 mg etrasimod* 
 Physical examination findings (abnormalities will be recorded and summarized as AEs) 
* The statistical analysis to be performed for these endpoints will be described in a separated 
SAP (refer to Section 1) 
2.2.2.3 Pharmacokinetic Endpoints 
 Plasma concentrations of etrasimod from samples collected prior to dosing and 4 hours (± 
15 minutes) postdose (after ECG) on Week 24* 
 Plasma concentrations of etrasimod from samples collected prior to dosing (trough; within 
60 minutes prior to dosing) at Weeks 25, 28, 36, and 44* 
 Plasma concentrations of etrasimod will be assessed from samples collected anytime at 
Week 52 or at the Early Termination (ET) visit, and the follow-up visits, as applicable* 
* The statistical analysis to be performed for these endpoints will be described in a separated 
SAP (refer to Section 1) 
3 STUDY DESIGN 
3.1 Design Overview 
This is a Phase 2, multicenter, randomized, double-blind, placebo-controlled study to assess the 
safety and efficacy of etrasimod 2 mg and 3 mg, once daily for up to 52 weeks in subjects with 
moderate-to-severe AA. The study includes multiple periods: a ≤ 4-week Screening Period (to 
determine subject eligibility), a 24-week DB Treatment Period, a 28-week OLE Period, and a 
4-week Safety Follow-Up (SFU) Period for a maximum total study duration of 60 weeks.  
This study will include approximately 78 subjects (36 in Cohort 1 and 42 in Cohort 2 as 
described below) with moderate-to-severe AA with current episode of hair loss for ≥ 6 months 
but < 8 years in Cohort 1 and hair loss for ≥ 6 months and < 5 years in Cohort 2 (current episode 
must also be relatively stable during the last 6 months with no significant regrowth).  
Subjects will be separated into 2 cohorts as follows:  
Cohort 1: All subjects (approximately 36 subjects) enrolled under the original protocol, and 
Amendments 0.1, 0.2, 1.0, and 1.1.  


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 14 of 66 
Subjects will be randomized in a 2:1 ratio to receive etrasimod 2 mg or placebo orally, once 
daily. Randomization is stratified by SALT I score (< 100, 100) at Day 1/Baseline. Subjects 
will complete the DB Treatment Period per their original randomization assignment. Subjects 
who have entered the OLE Period prior to Amendments 2.0 and 2.1 implementation will 
transition to 3 mg once daily at their next study visit. Subjects who have not entered the OLE 
Period prior to Amendments 2.0 and 2.1 implementation will receive etrasimod 2 mg from the 
Week 24 visit to the Week 25 visit and will transition at the Week 25 visit to etrasimod 3 mg 
orally, once daily for the remainder of the OLE Period. Of note, subjects already in the OLE 
Period at the time of Amendments 2.0 and 2.1 implementation may be allowed to continue on 
etrasimod 2 mg at the Investigator’s discretion provided that they have achieved a SALT I score 
≤ 20.  
Cohort 2: All subjects (approximately 42 subjects) enrolled under protocol Amendments 2.0 and 
2.1. Subjects will be randomized in a 4:1:2 ratio to receive etrasimod 3 mg, etrasimod 2 mg, or 
placebo orally, once daily, in a double-blind manner for the 24-week DB Treatment Period. 
Randomization will be stratified by SALT I score (< 50, ≥ 50) at Day 1/Baseline. During the DB 
Treatment Period, subjects assigned to etrasimod 3 mg will receive etrasimod 2 mg orally, once 
daily from Day 1 to the Week 1 visit and will transition at the Week 1 visit to etrasimod 3 mg 
orally, once daily for the remainder of the DB Treatment Period. During the OLE Period, all 
subjects will receive etrasimod 2 mg orally, once daily from the Week 24 visit to the Week 25 
visit. At the Week 25 visit all subjects will transition to 3 mg orally, once daily for the remainder 
of the OLE Period. 
 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 15 of 66 
Figure 1: 
Schematic Diagram of Study Design 
 
 
a Randomized 2:1 (etrasimod 2 mg:placebo) in the Double-Blind Treatment Period.  
b Subjects entering the Open-Label Extension Period (Week 24 visit) before implementation of Amendments 2.0 and 2.1 will transition to 3 mg 
once daily at their next study visit (refer to Section 10.5.7.5 and Appendix 1 of the protocol for additional information on Holter monitoring). 
Subjects entering the Open-Label Extension Period (Week 24 visit) after implementation of Amendments 2.0 and 2.1 will receive etrasimod 2 mg 
from the Week 24 visit to the Week 25 visit and will transition to etrasimod 3 mg at the Week 25 visit. Of note, subjects already in the Open-Label 
Extension Period at the time of Amendments 2.0 and 2.1 implementation may be allowed to continue on etrasimod 2 mg at the Investigator’s 
discretion provided that they have achieved a SALT I score ≤ 20.  
c SFU 1 and SFU 2 are to be conducted 2 and 4 weeks (± 3 days) after last dose of study drug, respectively.  
d Randomized 4:1:2 (etrasimod 3 mg:etrasimod 2 mg:placebo) in the Double-Blind Treatment Period.  
* Subjects will initiate treatment on 2 mg etrasimod for 1 week prior to starting 3 mg.  
Note: A visit window of ± 1 day is permitted for the Week 1 and Week 25 visits and ± 3 days for the Week 2, 4, 8, 12, 16, 20, 24, 28, 36, 44, and 
52 visits. Subjects who discontinue treatment prematurely, regardless of the reason, should be instructed to return for an ET visit within 1 week of 
when the last dose of study drug was taken, and to return for the Safety Follow-Up visits 2 weeks and 4 weeks (± 3 days) after the last dose of study 
drug.  
Note: Refer to Section 6.3.2 of the protocol for information on re-initiation of treatment after dose interruptions ET, early termination; N, number 
(of subjects); SFU, Safety Follow-Up 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 16 of 66 
3.2 Sample Size 
Subjects will be randomized as follows:  
 Cohort 1: ~36 subjects in 2:1 randomization ratio (~24 subjects to etrasimod 2 mg and 
~12 subjects to placebo) 
 Cohort 2: ~42 subjects with SALT I < 95 at Baseline in 4:1:2 randomization ratio (~24 
subjects to etrasimod 3 mg, ~6 subjects to etrasimod 2 mg, and ~12 subjects to placebo)  
Assuming a 15% drop-out rate from the study over 24 weeks, at least 35 treatment completers 
(20 subjects to etrasimod 3 mg, 5 subjects to etrasimod 2 mg, and 10 subjects to placebo from 
Cohort 2; plus subjects from Cohort 1 with SALT I < 95 at Baseline) at Week 24 will provide 
at least 80% and 47% power to detect a treatment difference of 20% for etrasimod 3 mg and 
etrasimod 2 mg from placebo, respectively, in the percent change from Baseline in SALT I at 
Week 24 by a 2-sample t-test using a 2-sided significance test level of 0.05 and common 
standard deviation (SD) of 17.8%. 
3.3 Treatment Randomization and Unblinding Procedures 
Under protocol amendments 1.0 and 1.1 (Cohort 1), randomization will take place at the Day 1 
visit prior to first dosing. Subjects who complete all Screening requirements and remain eligible 
for the study will be randomized in a 2:1 ratio to receive etrasimod 2 mg or placebo orally once 
daily for 24 weeks in the DB Treatment Period. The randomization will be stratified by SALT I 
score (< 100, 100) at Day 1/Baseline.  
Subjects enrolled during Amendment 2.0 and later (Cohort 2) who complete all Screening 
requirements and remain eligible for the study will be randomized in a 4:1:2 ratio to receive 
etrasimod 3 mg, etrasimod 2 mg, or placebo orally once daily for 24 weeks in the Double-Blind 
Treatment Period.  
This study includes a DB Treatment Period with limited access to the randomization code. The 
Unblinding Plan documents the procedure for unblinding.  
After completing the 24-week DB Treatment Period, eligibility for participation in the OLE Period 
will be determined. All eligible subjects in Cohort 1 will receive etrasimod 2 mg orally, for at least 
1 week during the OLE Period. Subjects in Cohort 1 will transition to 3 mg at the Week 25 visit 
or at their next OLE study visit after the implementation of Amendments 2.0 and 2.1. Subjects in 
Cohort 2 will receive etrasimod 2 mg orally, once daily for 1 week during the OLE Period and 
then transition to etrasimod 3 mg orally, once daily for the remainder of the OLE Period. Subjects 
from Cohort 1 who are already in the OLE Period at the time of Amendments 2.0 and 2.1 
implementation may be allowed to continue on etrasimod 2 mg at the Investigator’s discretion 
provided that they have achieved a SALT I score ≤ 20. 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 17 of 66 
3.4 Schedule of Events 
For the statistical analysis, DB Treatment Period will include 24 weeks treatment; OLE Period will 
include 28 weeks treatment and 4 weeks SFU. The date at which the subject is randomized will be 
referred to as the “Day 1/Baseline”. Subjects will be requested to attend the following scheduled 
visits for the DB Treatment Period from their Day 1/Baseline visit: Weeks 1, 2, 4, 8, 12, 16, 20, 
24 visits as applicable (Week 1 visit is applicable to Cohort 2 only). For the OLE Period, subjects 
will attend scheduled visits at Week 24 (this will be same as Week 24 in the DB Treatment Period), 
and Weeks 25, 28, 36, 44, and 52. Subjects who terminate the study drug early in the DB Treatment 
Period or OLE Period should have SFU Visits 2 weeks and 4 weeks after the last dose of study 
drug. Visits subjects make to the clinic outside the visit window are recorded as unscheduled visits. 
Refer to Schedules of Assessments (Appendix 1 and Appendix 2 in the protocol) for more details. 
4 GENERAL CONSIDERATIONS 
Formats and layouts of TLF will be provided in a separate document (output general layout is 
described in Appendix 3).  
An analysis of efficacy and safety data will be performed after all subjects have completed or early 
terminated from the 24-week DB Treatment Period. A final analysis of efficacy and safety data 
will be performed once all subjects completed or early terminated from the study. 
4.1 Baseline 
Baseline will be defined separately for DB Treatment Period and OLE Period as follows: 
Double-Blind Treatment Period 
The Study Baseline or DB Treatment Period Baseline (DB Baseline) will be defined as the last 
non-missing assessment prior to the first study treatment dose (including unscheduled 
assessments). If the last non-missing assessment is performed on the same date as the first study 
treatment and time is not available, the assessment will be considered as baseline, except for 
adverse events and medications starting on the first study treatment dose date which will be 
considered post-baseline. 
Open-Label Extension Period 
The OLE Period Baseline (OLE Baseline) will be defined as the last non-missing assessment prior 
to the first etrasimod dose started at Week 24 for subjects who received placebo during the DB 
Treatment Period. For subjects who were on etrasimod in the DB Treatment Period, the OLE 
Baseline will be taken from the DB Baseline.  


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 18 of 66 
Change from Baseline will be defined for both DB Treatment Period and OLE Period as the post-
Baseline value minus the Baseline value unless otherwise specified. Percent change from Baseline 
will be calculated as follows:  
Percent change from Baseline (%) = (Change from Baseline / Baseline) x 100.   
Percent change from Baseline will be missing in situation where Baseline value equals to 0. 
4.2 Reference Start Date, Study Day, and Period Day 
Study Day will be calculated as follows and will be used to show start/end day of assessments or 
events: 
Study Day = (Date of event – Date of first dose) + 1 if date of event is on or after the date of first 
dose of study treatment 
= (Date of event – Date of first dose) if date of event is before the date of first dose of 
study treatment. 
Period Day will be calculated as follows for each study period separately: 
Period Day for DB Treatment Period = (Date of event – Date of first dose of study treatment during 
the DB Treatment Period) + 1 if date of event is on or after 
the date of first dose of study treatment during the DB 
Treatment Period 
= (Date of event – Date of first dose of study treatment 
during the DB Treatment Period) if date of event is before 
the date of first dose of study treatment during the DB 
Treatment Period 
Period Day for OLE Period = (Date of event – Date of first dose of study treatment during the OLE 
Period) + 1. 
In the situation where the date of event is partially or completely missing, the Study Day and 
corresponding Period Day will be missing. 
4.3 Windowing Conventions 
When available, visits will be analyzed as scheduled (refer to protocol Appendices 1 and 2). ET 
and/or unscheduled/retest measurements will only be included if a scheduled measurement is not 
available, and the ET or unscheduled/retest measurement falls within the analysis visit windows 
as described in Table 1. 
If there is more than one retest, unscheduled or ET assessment for a given analysis visit, the 
assessment closest to the target day will be retained for data summary of that visit; if there are 2 




Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 20 of 66 
4.5 Handling of Retests, Unscheduled Visits, and Early Termination Data 
Retests measurements, unscheduled measurements, and ET visit assessments will be included in 
analysis and summarized via analysis visit windowing according to the windowing conventions in 
Section 4.3.  
4.6 Software Version 
All analyses will be performed using SAS® software Version 9.4. 
5 STATISTICAL CONSIDERATIONS 
5.1 Analysis Sets 
The following analysis sets will be defined for the DB Treatment Period and OLE Period 
separately: 
Table 2. Summary of Analysis Sets 
Analysis Set 
Description 
DB Treatment Period 
Randomized Set 
The Randomized Set includes all randomized subjects, irrespective of 
whether they received any study drug. 
All subjects will be analyzed according to the treatment group to which 
they were randomized. 
Full Analysis Set 
(FAS) 
The FAS includes all randomized subjects with a SALT I < 95 at 
Baseline who received at least one dose of study drug. The FAS will be 
used for the primary analysis of the primary efficacy endpoint and main 
analysis of the secondary, exploratory, and other efficacy endpoints. 
All subjects will be analyzed according to the treatment group to which 
they were randomized. 
Modified Full 
Analysis Set 
(mFAS) 
The mFAS consists of all randomized subjects with a SALT I < 95 at 
Baseline who received at least 1 dose of study drug, have a Baseline 
measurement, and have at least 1 post-randomization measurement.  
The mFAS is endpoint specific, therefore subjects included in the 
analysis set for 1 endpoint may differ from another endpoint, based on 
the Baseline and post-Baseline data. The mFAS will be used for 
sensitivity analyses for the primary and secondary endpoints in SALT I. 
All subjects will be analyzed according to the treatment group to which 
they were randomized. 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 21 of 66 
Analysis Set 
Description 
Per Protocol Set 
(PPS) 
The PPS consists of all subjects in the FAS with no major protocol 
deviations (PD) potentially having an impact on the SALT I-related 
primary and secondary efficacy endpoints (refer to Sections 7.2 and 
10.1). 
The PPS will be used for sensitivity analyses for the primary and 
secondary efficacy endpoints in SALT I to evaluate the influence of 
major PD potentially having an impact on the efficacy endpoints. 
All subjects will be analyzed according to the treatment group to which 
they were randomized.   
Safety Set (SAF) 
The SAF consists of all randomized subjects who received at least 1 dose 
of study drug.  
All safety analysis in the DB Treatment Period will be performed using 
SAF. All subjects will be analyzed according to the actual treatment they 
received. In case a subject received more than one actual treatment, the 
first treatment received will be used for the safety analysis. 
OLE Period 
OLE Safety Set 
(OLE SAF) 
The OLE SAF includes all subjects who received at least one dose of 
study drug in the OLE Period.  
All safety analysis in the OLE Period will be performed using OLE SAF. 
All subjects will be analyzed according to the actual treatment they 
received. In case a subject received more than one actual treatment, the 
first treatment received will be used for the safety analysis. 
OLE Full Analysis 
Set (OLE FAS) 
The OLE FAS includes all subjects with a SALT I < 95 at Baseline 
who received at least one dose of study drug in the OLE Period.  
All efficacy analysis in the OLE Period will be performed using OLE 
FAS. All subjects will be analyzed according to the actual treatment 
they received. In case a subject received more than one actual 
treatments, the first treatment received will be used. 
5.2 Adjustments for Covariates 
For the continuous efficacy endpoints (e.g., change and percent change from baseline), disease 
duration and baseline value will be included as covariates in the statistical models, where disease 
duration, in years, will be calculated as follows: 
Disease duration (years) = (Randomization date - Initial onset date +1)/365.25 
Should the day be missing for the initial onset date, it will be imputed to the 1st of the month.  
Should both the day and month be missing for the initial onset date, they will be imputed to January 
1st.  Completely missing initial onset date will not be imputed. 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 22 of 66 
For binary efficacy endpoints, Cochran-Mantel-Haenszel (CMH) tests will be stratified by the 
stratification factor for SALT I based on the value used by the IWRS at the time of randomization. 
If there are more than 10% of subjects who were mis-stratified, a sensitivity analysis will be 
conducted using the value from the clinical database.  
5.3 Handling of Dropouts or Missing Data 
See Section 5.2 for handling of completely or partially missing dates for disease duration. 
See Appendix 2 for handling of completely or partially missing dates for prior and concomitant 
medications and AEs. 
In DB Treatment Period, missing continuous efficacy data will not be imputed before being 
summarized using descriptive statistics and analyzed using a Mixed Model Repeated Measures 
(MMRM) as primary analysis (See section 10.1). For binary efficacy endpoints, subjects with 
missing data for any reason will be imputed as per the Non-Responder Imputation (NRI) method 
i.e., considered as a ‘non-responder’. As sensitivity analyses to the primary analysis of the primary 
efficacy endpoint and main analysis of the secondary efficacy endpoints, missing SALT I scores 
will be imputed as specified in sections 10.1 and 10.2. 
In the OLE Period, missing efficacy data will not be imputed. 
Unless otherwise specified, there will be no imputation for missing safety data for both study 
periods (DB Treatment Period and OLE Period). 
5.4 Interim Analysis and Data Monitoring 
No formal interim analysis of efficacy is planned.  
5.5 Multicenter Studies 
Study will be conducted at multiple (approximately 29) study sites in the United States and Canada. 
All sites will be combined for the statistical analyses owing to the small number of subjects 
expected per site. 
5.6 Multiple Comparisons/Multiplicity 
No formal testing strategy or adjustments of the Type I error will be employed for the primary and 
secondary efficacy endpoints. Estimates and two-sided 95% Confidence Intervals (CIs) for 
treatment groups and from treatment comparisons will be reported in an exploratory manner. 
5.7 Examination of Subgroups 
Subgroup analysis by below variables will be performed using descriptive statistics only based on 
the following analysis set for the primary and secondary efficacy endpoints of the DB Treatment 
Period (refer to Sections 10.1 and 10.2, respectively) to explore whether the treatment effects are 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 23 of 66 
consistent across different subgroups. Median will be derived based on subjects specific to each 
analysis set. 
 Sex (male, female) – FAS 
 Race (white, non-white) – FAS 
 Age (≤ or > median) – FAS 
 Baseline SALT I score (≤ or > median) – FAS 
 Duration of AA from initial onset (≤ or > median) – FAS 
 Current disease duration (0 - < 2.5 years, 2.5 years - < 5 years, ≥ 5 years): from onset of 
current episode – FAS 
 Baseline AASIS (≤ or > median) – FAS 
 Baseline AA-QLI (≤ or > median) – FAS 
Additionally, subgroup analysis by below variables will also be performed using descriptive 
statistics only based on the following analysis set for demographic and other baseline 
characteristics (refer to Section 6.1), disposition of subjects (refer to Section 7.1), primary and 
secondary efficacy endpoints of the DB Treatment Period (refer to Sections 10.1 and 10.2, 
respectively), and exploratory efficacy endpoint of percent change from baseline in peripheral 
lymphocyte counts of the DB Treatment Period (refer to Section 10.3). 
 Cohort (1 or 2) – FAS 
 Baseline SALT I score (< 50 or ≥ 50) – FAS 
 Baseline SALT I score (< 50, ≥ 50 to < 95 or ≥ 95) – Randomized Set  
 Current disease duration (< 5 years, ≥ 5 years): from onset of current episode – FAS 
The overall summary of AEs during the DB Treatment Period (refer to Section 11.1) and summary 
of vital signs of the observed and change from pre-dose values at Day 1 and Week 24 (refer to 
Section 11.3) will also be summarized by these subgroups for SAF. 
6 SUBJECTS CHARACTERISTICS 
6.1 Demographic and other Baseline Characteristics 
Demographics and baseline characteristics will be summarized with descriptive statistics based on 
the Randomized Set, FAS, and Safety Set for the DB Treatment Period and on the Open-Label 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 24 of 66 
Extension Safety Set, Open-label Extension FAS for the OLE Period. The list of demographics 
and baseline characteristics to be summarized includes:  
 Age (years) – at time of informed consent 
 Sex (male, female) 
 Ethnicity (Hispanic or Latino, not Hispanic or Latino, not reported, unknown) 
 Race (White, American Indian or Alaska Native, Asian, Native Hawaiian or other Pacific 
Islander, Black or African American, not reported) 
 Baseline height (cm) 
 Baseline weight (kg) 
 Baseline BMI (kg/m2)  
 Baseline BMI (kg/m2) by category (≤ 25 kg/m2, > 25 kg/m2) 
 Cohort (Cohort 1, Cohort 2) 
 AA disease duration (years) since initial onset (refer to Section 5.2) 
 AA disease duration (years) for current episode, where AA disease duration for current 
episode, in years, will be calculated as follows: (Date of randomization – Start date of 
current episode) + 1 
 AA disease duration (years) for current episode by category (0 - <2.5 years, 2.5 - < 5 years, 
≥ 5 years) 
 Baseline SALT I score  
 Baseline SALT I score by category (< 50, ≥ 50), (< 50, 50 - < 95, ≥ 95) , (< 95, 95 - < 100, 
100) 
 Baseline AASIS 
 Baseline AA-QLI 
A listing of all demographics and baseline characteristics will be provided. 
6.2 Surgical/Medical History and Alopecia Areata History 
Medical history will be coded according to the Medical Dictionary for Regulatory Activities 
(MedDRA), Version 24.1. 
Surgical and medical history will be summarized by system organ class (SOC) and preferred term 
(PT) on the safety analysis set. A subject who experienced the same surgical and medical history 
event multiple times will be counted only once for the corresponding PT. Similarly, if a subject 
experienced multiple surgical and medical history events within the same SOC, the subject will be 
counted only once for that SOC. Surgical and medical history events will be sorted alphabetically 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 25 of 66 
by SOC and within each SOC the PT will be presented by decreasing order of total frequency 
within each SOC. 
Disease history of the subject’s AA, including the AA subtype at initial diagnosis and current 
episode diagnosis, any prior AA treatment taken, and current involvement of fingernail, eyelash, 
eyebrow, and facial hair will be summarized descriptively.   
A listing of all surgical and medical history events will be provided. In addition, a listing of AA 
disease history will also be provided. 
7 SUBJECTS ACCOUNTABILITY 
7.1 Disposition of Subjects 
All subjects who provide informed consent will be accounted for in this study. The number of 
subjects screened, enrolled, screen failed and the reason for screen failure will be presented for all 
screened subjects for each cohort and overall in the DB Treatment Period. The percentage of 
subject enrolled and screen failures will be calculated using the number of subjects screened in 
each cohort as denominator. The percentage of reasons for screen failure will be calculated using 
the number of screen failures in each cohort as denominator. 
For the DB Treatment Period, the numbers and percentages of randomized subjects included in 
each analysis set (Randomized, FAS, modified FAS, PPS, and Safety) will be presented for each 
DB Treatment Period group and overall.  
Study DB Treatment Period completion status and the reason for DB Treatment Period treatment 
discontinuation will also be presented for each DB Treatment Period treatment group and overall. 
The percentage of reasons for DB Treatment Period study discontinuation will be calculated using 
the number of subjects randomized in the DB Treatment Period as denominator. 
The numbers and percentages of subjects enrolled into OLE period and subjects not enrolled into 
OLE Period will be presented for each DB Treatment Period treatment group and overall.  
Subject disposition in the OLE Period and the full study (DB Treatment Period and OLE Period) 
will be summarized using frequency counts and percentages, including: OLE Period completion 
status, reason for treatment discontinuation in the OLE Period, full study completion status and 
reason for study discontinuation in the full study (overall and by OLE Period treatment group).  
The percentage of reasons for OLE Period study discontinuation will be calculated using the 
number of subjects randomized in the OLE Period as denominator. 
A listing of subject’s disposition will be provided. Information on first screening for subjects who 
were rescreened, including the rescreened subject identifier, will be presented under the first 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 26 of 66 
screening subject identifier. A listing of subject’s randomization information and a listing of 
subjects included in each of the study populations will also be provided. 
In order to describe the impact of COVID-19, subjects discontinued from the study due to COVID-
19 as the primary reason will be summarized in the above disposition table. The specific reasons 
for subjects discontinued due to COVID-19 such as subject decision, subject self-isolation, non-
compliance with protocol, transportation issue, site restrictions, physician decision, site closed, 
lack of drug at site, sponsor decision, and severity of COVID-19 infection will be presented in the 
above disposition listing. 
7.2 Protocol Deviations 
PDs with a start date before the date of first dose in OLE will be considered a DB PD while PDs 
with a start date on or after the date of first dose in OLE will be considered an OLE PD. 
A blinded data review will be conducted before the primary database lock by the Medical Monitor 
and Sponsor to classify each PD occurring during the DB Treatment Period as 1) important or non-
important and 2) major or minor (refer to the PD Management Plan [PDMP]). Another data review 
will be conducted before the final database lock by the Medical Monitor and Sponsor to classify 
each PD occurring during the OLE period as 1) important or non-important and 2) major or minor 
(refer to the PDMP). 
During the review conducted before the primary database lock for DB Treatment Period, major 
PDs potentially having an impact on the SALT I-related primary and secondary efficacy endpoints 
will be identified by the Medical Monitor and Sponsor and will lead to the exclusion from the PPS. 
These PDs might include, but are not limited to:  
 Violation of eligibility criteria 
 Receiving incorrect study treatment 
 Compliance with study treatment < 80% 
 Chronic use of prohibited medication while on study treatment 
The number of events and the frequency count and percentage of subjects with at least one 
important PD, with a least one major PD, with at least one major PD potentially having an impact 
on the SALT I-related primary and secondary efficacy endpoints, and with at least one PD 
associated with COVID-19 will be summarized for the DB Treatment Period by treatment group, 
deviation category, and deviation sub-category using the randomized set. Important PDs, major 
PDs, and PDs related to COVID-19 will be summarized similarly overall using the randomized set 
and for the OLE period using the OLE SAF. 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 27 of 66 
A listing of all protocol deviations will be provided. Important PDs, major PDs, major PDs 
potentially having an impact on the on the SALT I-related primary and secondary efficacy 
endpoints, and COVID-19 related PDs will be flagged in this listing. 
8 PRIOR AND CONCOMITANT MEDICATIONS 
Medications will be coded according to the World Health Organization Drug Dictionary (WHO-
DD), September 2021 B3. 
Prior medications are defined as any medication started and discontinued prior to the first study 
treatment dose. Concomitant medications are defined as any medication taken from the first study 
treatment dose throughout the end of the study including those who started prior to the first study 
treatment date and continued past that date. See Appendix 2 for handling of completely or partially 
missing dates for prior and concomitant medications. Concomitant medications taken on or after 
the first dose of study treatment during the DB Treatment Period and before the first dose of study 
treatment during the OLE Period, including those started before the first dose of study treatment 
during the DB Treatment Period and continued past that date, will be assigned to the DB Treatment 
Period.  Concomitant medication taken on or after the first dose of study treatment during the OLE 
Period, including those started before the first dose of study treatment during the OLE Period and 
continued past that date, will be assigned to the OLE Period. 
Incidence of prior medications will be tabulated by anatomical therapeutic chemical (ATC) level 
3 and Preferred Drug Name based on the SAF. Subject with the same medication taken multiple 
times within the same Preferred Drug Name will be counted only once for that Preferred Drug 
Name. Similarly, if a subject has taken more than one medication within the same ATC level, then 
the subject will be counted only once for that ATC. Concomitant medications will be summarized 
similarly by study period. 
A listing of all prior and concomitant medications will be provided. 
9 STUDY TREATMENT EXPOSURE AND TREATMENT 
COMPLIANCE 
Duration of exposure to study drug, in days, will be computed overall and for each study period as 
follows: 
Overall duration of exposure = (Date of last dose of study drug, regardless of the study period – 
Date of first dose of study drug during the DB Treatment Period) 
+ 1 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 28 of 66 
Duration of exposure for DB Treatment Period = (Date of last dose of study drug during the DB 
Treatment Period – Date of first dose of study drug during the 
DB Treatment Period) + 1 
Duration of exposure for OLE Period = (Date of last dose of study drug during the OLE Period – 
Date of first dose of study drug during the OLE Period) + 1 
 
Duration of exposure to etrasimod 2 mg and etrasimod 3 mg will also be computed overall and for 
the OLE Period as follows: 
Overall duration of exposure to etrasimod 2 mg = (Date of last dose of etrasimod 2 mg, 
regardless of the study period – Date of first dose of etrasimod 2 
mg, regardless of the study period) + 1 
Overall duration of exposure to etrasimod 3mg = (Date of last dose of etrasimod 3 mg, regardless 
of the study period – Date of first dose of etrasimod 3mg, 
regardless of the study period) + 1 
Duration of exposure to etrasimod 2 mg during the OLE Period = (Date of last dose of etrasimod 
2 mg during the OLE Period – Date of first dose of etrasimod 2 
mg during the OLE Period) + 1 
Duration of exposure to etrasimod 3mg during the OLE Period = (Date of last dose of etrasimod 
3 mg during the OLE Period – Date of first dose of etrasimod 
3mg during the OLE Period) + 1 
In addition, duration of dose interruptions (in days) will be calculated overall and by study period 
as follows: 
Overall duration of dose interruptions = 
∑
(End date of dose interruption i −Start date of dose interruption i) + 1
n
i=1
 
if subject has at least one dose interruption interval 
0 if subject has no dose interruption intervals 
where n = total number of dose interruption intervals during the whole study. 
Duration of dose interruptions for the DB Treatment Period and OLE Period will be calculated 
similarly, but n will be the total number of dose interruptions during the DB Treatment Period and 
total number of dose interruptions during the OLE Period, respectively. 
Compliance with study drug, in percentage, will be calculated overall and by study period as 
follows: 
 
Compliance with study drug (%) for DB Treatment Period= 
 
Total number of tablets taken during the DB Treatment Period 
 x 100 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 29 of 66 
Expected number of tablets to be taken during the DB Treatment Period 
 
where the expected number of tablets to be taken during the BD Treatment Period is the duration 
of exposure to study drug during the DB Treatment Period, in days, multiplied by the number of 
tablets to be taken per day.  For Cohort 1, the number of tablets to be taken per day is 1 while, for 
Cohort 2, the number of tablets to be taken per day is 2. 
 
Compliance with study drug (%) for OLE Period=  
 
Total number of tablets taken during the OLE Period 
 x 100 
Expected number of tablets to be taken during the OLE Period 
 
where the expected number of tablets to be taken during the OLE Period= 
[Duration of exposure to etrasimod 3 mg during the OLE Period (days) * number of tablets 
to be taken /day (i.e., 2)]  
+  
[Duration of exposure to etrasimod 2 mg during the OLE Period (days) * number of tablets 
to be taken /day (i.e., 1)] 
 
Overall compliance with study drug (%)= 
 
 
Total number of tablets taken overall 
 x 100 
Expected number of tablets to be taken overall 
 
where expected number of tablets to be taken overall study will be the sum of expected number of 
tablets to be taken during the DB Treatment Period and expected number of tablets to be taken 
during the OLE Period. 
Duration of exposure to study treatment (days), number of subjects with dose interruption, duration 
of dose interruption (days), and compliance with study treatment (%) will be summarized using 
descriptive statistics by treatment group, overall and by study period using the SAF. Compliance 
with study treatment will also be summarized using the frequency cout and percentage of subjects 
in each of the following categories based on the SAF: < 80%, [80% - 120%] and > 120%. 
Exposure and compliance will be displayed in a listing of study treatment administration. 
10 EFFICACY ANALYSIS 
Unless otherwise indicated, efficacy endpoints will be summarized and analyzed using the FAS 
by visit and treatment group, as applicable.  


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 30 of 66 
10.1 Primary Efficacy Endpoint 
The primary efficacy endpoint is percent change from Baseline in SALT I at Week 24. 
SALT I is a well-validated metric and widely utilized tool for determining the degree of hair loss 
based on the percentage of scalp surface area involved on the top, back, and each side of the scalp 
for AA. Using the diagram in Figure 2,  the Investigator will determine the percent scalp hair loss 
in a given quadrant, multiply this by the total scalp area delineated by that quadrant, and sum the 
resultant numbers for each quadrant to give the total percent scalp hair loss with a maximum score 
of 100. Change and percent change from Baseline in total percent of scalp hair loss will then be 
calculated as described in Section 4.1. 
 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 31 of 66 
Figure 2: Visual Aid for Estimating Percentage Scalp Hair Loss Using the Severity of 
Alopecia Tool 
 
 
Analysis of Primary Efficacy Endpoint 
Primary Analysis 
Missing data will be handled as described in Section 5.3. 
Percent change from baseline in SALT I score will be summarized using descriptive statistics by 
visit and treatment group.  Observed and change from Baseline in SALT I score will be 
summarized similarly. 
The primary endpoint will be analyzed using a MMRM model. The MMRM model will include 
the treatment group (2 mg, 3 mg, and placebo), analysis visit (Weeks 1, 2, 4, 8, 12, 16, 20, and 
24), and treatment-by-analysis visit interaction as fixed effects, and disease duration (years; refer 
to Section 5.2) and Baseline SALT I score as covariates. 
An unstructured (UN) variance-covariance matrix will be specified for the MMRM model. If 
convergence issues arise, the autoregressive (order 1) [AR(1)] structure will be used. If the 
AR(1) structure also does not converge, other covariance structures deemed appropriate to fit 
the data will be used and the structure with the smallest finite-sample corrected Akaike 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 32 of 66 
Information Criteria (AAIC) value will be retained. Least squares (LS) mean estimates, LS mean 
differences between treatment groups (each of the active arms versus placebo only), 
corresponding 95% CIs, and p-values will be reported for each visit. The primary comparisons 
of interest will be between each active arm and placebo at Week 24. 
Sensitivity Analysis  
In addition to the primary analysis, the following sensitivity analyses will be performed using 
imputed data or alternative analysis set: 
1) ANCOVA at Week 24 with Multiple imputation (MI) using the FAS  
All missing SALT I scores at scheduled visits up to Week 24 will be imputed using a multiple 
imputation (MI) technique with a fully conditional specification (FCS; Brand, 1999; van Buuren 
et al., 2007) predictive mean matching (PMM; Heitjan and Little, 1991; Schenker and Taylor, 
1996) sequential regression multiple imputation model, where missing values for all variables 
(visits) are imputed sequentially one at the time, with preceding variables (visits) serving as 
covariates.  For each variable (visit), the FCS PMM regression model will include the outcome 
at that visit as the dependent variable and as independent variables, the treatment group, disease 
duration, baseline SALT I score, and SALT I scores at the previous scheduled visits using a seed 
of 20210106. The number of observed values whose predicted values are closest to the predicted 
value of the missing value and among which an observed value will be randomly selected to 
impute the missing value will be the SAS default value (i.e., k = 5).  This process will be repeated 
100 times, resulting in a total of 100 complete analysis datasets. 
The example SAS code for the multiple imputation process is as below: 
PROC MI DATA=SALTI1 OUT=SALTI2 SEED=20210106 NIMPUTE=100; 
CLASS TRTPN; 
FCS REGPMM(SALT2=TRTPN DISDUR BASESALT); 
FCS REGPMM(SALT3=TRTPN DISDUR BASESALT SALT2); 
FCS REGPMM(SALT4=TRTPN DISDUR BASESALT SALT2 SALT3); 
FCS REGPMM(SALT5=TRTPN DISDUR BASESALT SALT2 - SALT4); 
FCS REGPMM(SALT6=TRTPN DISDUR BASESALT SALT2 - SALT5); 
FCS REGPMM(SALT7=TRTPN DISDUR BASESALT SALT2 - SALT6); 
FCS REGPMM(SALT8=TRTPN DISDUR BASESALT SALT2 – SALT7); 
VAR TRTPN DISDUR BASESALT SALT2 – SALT8; 
RUN; 
For each multiply imputed dataset, percent change from Baseline in SALT I score will be derived 
using observed and imputed values and the percent change from Baseline at Week 24 will be 
analyzed using an ANCOVA model including the treatment group as fixed effect, and disease 
duration (years) and Baseline SALT I score as covariates. Results from each ANCOVA model 
(LS means [and associated standard errors], LS mean difference between each etrasimod 
treatment group and placebo [and associated standard errors], and parameter estimates) will be 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 33 of 66 
combined and reported along with two-sided 95% CI and p-value using PROC MIANALYZE 
based on Rubin’s rule. 
2) Observed Cases (OC) in mFAS: The primary analysis of the primary endpoint will be 
repeated in mFAS based on observed data without imputation. 
3) OC in PPS: The primary analysis of the primary endpoint will be repeated using the PPS 
to evaluate the influence of major protocol deviations on the primary results. 
4) OC in Randomized Set: The primary analysis of the primary endpoint will be repeated 
in Randomized Set based on observed data without imputation. 
5) OC in FAS Adjusting for the SALT I Stratification Variable and Cohort: The primary 
analysis of the primary endpoint will be repeated using the FAS based on observed data 
without imputation and will also include the stratification variable of SALT I (< 50 and 
≥ 50) and cohort (1 and 2) as fixed effects to evaluate the influence of the change of 
randomization ratio between Cohort 1 and Cohort 2. 
6) OC in FAS Including Cohort 2 Only: The primary analysis of the primary endpoint will 
be repeated using the FAS based on observed data without imputation but including only 
subjects randomized in Cohort 2.  The stratification variable of SALT I (< 50 and ≥ 50) 
will also be included in the MMRM model as a fixed effect. 
7) OC in FAS Excluding the Etrasimod 3 mg Treatment Group: The primary analysis of the 
primary endpoint will be repeated using the FAS based on observed data without 
imputation but excluding the Etrasmiod 3 mg treatment group. The stratification variable 
of SALT I (< 50 and ≥ 50) and Cohort (1 and 2) will also be included in the MMRM 
model as a fixed effect. 
Subgroup Analyses 
Subgroup analyses will be performed descriptively for the subgroups defined in Section 5.7. 
10.2 Secondary Efficacy Endpoints 
SALT I will also be analyzed as follows: 
 Change from Baseline in SALT I at Week 24 
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I at Week 
24 
 Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I at Week 
24 
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I at Week 
24 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 34 of 66 
Analysis of Secondary Efficacy Endpoints 
The secondary endpoints will be analyzed using the FAS. 
Main Analysis 
The change from Baseline in SALT I at Week 24 will be summarized and analyzed as for the 
primary analysis of the primary efficacy endpoint (refer to Section 10.1). 
For proportion-based secondary endpoints at Week 24, subjects with missing data for any reason 
will be imputed as described in Section 5.3.  Frequency count and percentage of subjects achieving 
the criteria (and associated two-sided 95% Clopper-Pearson exact CIs) will be reported for each 
treatment group. The differences in proportion between each etrasimod treatment group and 
placebo, along associated two-sided 95% unconditional exact CIs, and p-value will also be 
reported. The proportion of subjects achieving the criteria in each etrasimod treatment group vs. 
placebo will be analyzed using a CMH test, adjusted for the randomization stratification factor 
SALT I score (< 50, ≥ 50) at Baseline. Subjects in Cohort 1 will be considered in the ≥ 50 group 
as per inclusion criteria for Cohort 1.  
Sensitivity Analysis  
For the change from Baseline in SALT I at Week 24, the same sensitivity analyses as for the 
primary efficacy endpoint will be performed (refer to Section 10.1).  
For the proportion-based secondary endpoints at Week 24, the following sensitivity analyses will 
be performed using imputed data or alternative analysis set: 
1) MI in FAS: Missing response status will be derived based on the multiple imputed 
datasets for SALT I values using the same multiply imputed datasets than for sensitivity 
analysis #1 of primary efficacy endpoint (refer to Section 10.1). The same CMH test will 
then be performed and combined using Rubin’s method. Combined proportion along 
with the 95% CI, and p-value will be reported. 
2) NRI in mFAS: The main analysis of these secondary efficacy endpoints will be repeated 
based on the mFAS. 
3) NRI in PPS:  The main analysis of these secondary efficacy endpoints will be repeated 
based on the PPS. 
4) OC in FAS: The proportion-based key secondary endpoints at Week 24 will be analyzed 
in FAS based on observed data without imputation. 
5) NRI in Randomized Set: Missing proportion-based response status at Week 24 will be 
imputed as ‘non-responders’. The same CMH test will then be performed in the 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 35 of 66 
Randomized Set. The randomization stratification factor SALT I score (< 50, 50-< 95, ≥ 
95) at Baseline will be used.  
Subgroup Analyses 
The same subgroup analyses as for the primary efficacy endpoint will be performed on all 
secondary endpoints descriptively using the FAS. 
10.3 Exploratory Efficacy Endpoints  
SALT I 
SALT I (refer to Section 10.1) will also be analyzed as follows: 
 Percent change from Baseline in SALT I over time 
 Change from Baseline in SALT I over time 
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I over time 
 Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I over time 
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I over time 
 Proportion of subjects achieving a ≥ 90% improvement from Baseline in SALT I at Week 
24 
 Percent change from Baseline in SALT I at Week 24 as assessed by blinded central review 
 Change from Baseline in SALT I at Week 24 as assessed by blinded central review 
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I at Week 
24 as assessed by blinded central review 
  Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I at Week 
24 as assessed by blinded central review  
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I at Week 
24 as assessed by blinded central review  
 Proportion of subjects achieving a ≥ 90% improvement from Baseline in SALT I at Week 
24 as assessed by blinded central review 
AASIS 
The AASIS is a 13-item, disease-specific measure that asks participants about symptoms related 
to AA and how these symptoms interfere with daily functioning. Subjects will be asked to rate 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 36 of 66 
how severe each of the following 7 symptoms pertaining to AA symptoms have been in the past 
week using an 11-point scale ranging from 0 “not present” to 10 “as bad as you can imagine”: 
 Scalp hair loss 
 Body or eye lashes hair loss 
 Tingling/numbness of the scalp 
 Itchy or painful skin 
 Irritated skin 
 Feeling anxious or worry 
 Feeling sad 
Subjects will also be asked to rate how severe each of the following 6 areas of daily functioning 
are interfered with by AA in the past week using an 11-point scale ranging from 0 = “did not 
interfere” to 10 “interfered completely”: work, enjoyment of life, interaction with others, daily 
activities, sexual relationships, and quality of life. The overall scoring system ranges from of 
0 to 10 (overall score is the arithmetic mean) with high scores indicative of greater AA symptom 
impact. 
AASIS Symptoms Sub-score (1-7): If at least 4 out of 7 symptom items i.e., AASIS (1-7) 
questions have been answered, then AASIS symptoms sub-score will be the arithmetic mean of all 
answered symptom items; otherwise, the sub-score will be set to missing. 
AASIS Interference Sub-score (8-13): If at least 3 out of 6 interference items i.e., AASIS (8-13) 
questions have been answered, then AASIS interference sub-score will be the arithmetic mean of 
all answered interference items; otherwise, the sub-score will be set to missing. 
AASIS Total Score: If both AASIS Symptoms Sub-score (1-7) and AASIS Interference Sub-
score (8-13) are not missing, then AASIS total score will be the arithmetic mean of all answered 
symptoms and interference items, otherwise the total score will be set to missing. 
AASIS exploratory efficacy endpoint is: 
 Change from Baseline in AASIS at Week 24  
AA-QLI 
The AA-QLI is a disease-specific questionnaire developed to evaluate the impact of AA on quality 
of life. The AA-QLI has been validated with the Dermatology Life Quality Index and shown to 
provide more comprehensive insights about psychological distress among AA patients 
specifically. The AA-QLI consists of 21 questions covering 3 areas of daily life: subjective 
symptoms, relationships, and objective signs. AA-QLI Total Score is derived as the sum of the 
scores for the 21 questions. The results are presented on a scale varying between 21 and 84; a score 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 37 of 66 
of 21 represents the best quality of life, while a score of 84 represents the poorest quality of life 
outcomes. AA-QLI Total Score will be set to missing if at least one question is not answered.  
AA-QLI exploratory efficacy endpoint is: 
 Change from Baseline in AA-QLI at Week 24  
Lymphocyte Counts and Infections 
Clinical safety laboratory tests will be completed predose at each study visit.  
Lymphocyte counts exploratory efficacy endpoint is: 
 Percent change from Baseline in peripheral lymphocyte counts at Week 24 
Exploratory Endpoint Analyses 
Main Analysis 
With the following exception, exploratory efficacy endpoints will be summarized and analyzed as 
for the main analysis of the secondary efficacy endpoints (refer to Section 10.2). 
The exception is that the change and percent change from Baseline in SALT I at Week 24 as 
assessed by blinded central review will be summarized as the primary efficacy endpoint (refer to 
Section 10.1), but analyzed using an ANCOVA model based on observed-cases (missing data will 
not be imputed) and including treatment group as fixed effect, and disease duration (years) and 
Baseline SALT I score as covariates. LS means and LS mean difference between each etrasimod 
treatment group and placebo will be reported along with two-sided 95% CI and p-value.  
Sensitivity Analyses 
No sensitivity analyses will be performed for the exploratory efficacy endpoints. 
Subgroup Analyses 
The same subgroup analyses as for the primary efficacy endpoint will be performed for the 
exploratory efficacy endpoint of percent change from Baseline in peripheral lymphocyte counts at 
Week 24. 
No subgroup analyses will be performed for other exploratory efficacy endpoints. 
10.4 Other Efficacy Endpoints  
The following other efficacy endpoints will also be summarized and analyzed: 
 Proportion of subjects achieving a SALT I score ≤ 10 over time 
 Proportion of subjects achieving a SALT I score ≤ 20 over time 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 38 of 66 
 Proportion of subjects achieving a ≥ 90% improvement from Baseline in SALT I over time 
 Change from Baseline in AASIS at Week 12  
 Change from Baseline in AA-QLI at Week 12  
 Percent change from Baseline in peripheral lymphocyte counts at Weeks 1 (Cohort 2 only), 
2, 4, 8, 12, 16, and 20 
Other efficacy endpoints will be summarized and analyzed as for the proportion-based exploratory 
efficacy endpoints or continuous exploratory efficacy endpoints, as applicable, for visits occurring 
during the DB Treatment Period (refer to Section 10.3). 
No sensitivity analyses and no subgroup analyses will be performed for the other efficacy 
endpoints. 
10.5 Exploratory Efficacy Endpoints during the Open-Label Extension Period  
The following efficacy endpoints will be assessed at scheduled visits during the OLE Period up 
to 52 weeks: 
 Change and percent change from Baseline in SALT I over time 
 Change from Baseline in AASIS over time 
 Change from Baseline in AA-QLI over time 
 Change from Baseline in peripheral lymphocyte counts over time 
 Proportion of subjects achieving a ≥ 30% improvement from Baseline in SALT I over 
time 
 Proportion of subjects achieving a ≥ 50% improvement from Baseline in SALT I over 
time 
 Proportion of subjects achieving a ≥ 75% improvement from Baseline in SALT I over 
time 
 Proportion of subjects achieving a ≥ 90% improvement from Baseline in SALT I over 
time 
 Proportion of subjects achieving a SALT I score ≤ 10 over time 
 Proportion of subjects achieving a SALT I score ≤ 20 over time 
These endpoints will be summarized by visit using descriptive statistics based on the OLE FAS, 
with following considerations: 
 Missing data will not be imputed 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 39 of 66 
 Summaries will be provided for the three treatment groups in the OLE Period (OLE 2mg, 
OLE 2mg/3mg, OLE 3mg) and three randomized treatment groups in the DB Treatment 
Period (DB 2mg, DB 3mg, DB placebo) 
 Change and percent change from baseline in continuous variables will be summarized 
using change from OLE Baseline and DB Baseline (refer to Section 4.1).  
The photographic assessments of the full scalp for all subjects, of the eyebrows and eyelashes 
for subjects who have hair loss in these areas at Day 1/Baseline, and of the fingernails for subjects 
with fingernail changes related to AA (eg, pitting, white spots, and roughness) at Day 1/Baseline, 
will be reported in listing. 
10.6 Summary of Efficacy Analyses 
Table 3. Summary of Efficacy Analyses  
Efficacy Endpoint 
Primary/Main 
Analysis 
Sensitivity Analysis 
DB Treatment Period 
Primary  
Percent change from 
baseline in SALT I  
FAS, OC (MMRM) 
#1 FAS, MI (ANCOVA) 
#2 mFAS, OC (MMRM) 
#3 PPS, OC (MMRM) 
#4 Randomized Set, OC (MMRM) 
#5 FAS, OC (MMRM), adjusting for the 
SALT I stratification variable and cohort 
#6 FAS, OC (MMRM), including Cohort 2 
only and adjusting for the SALT I 
stratification variable 
#7 FAS, OC (MMRM), excluding Etrasimod 
3 mg and adjusting for the SALT I 
stratification variable and cohort 
Secondary 
Change from baseline 
in SALT I 
FAS, OC (MMRM) 
#1 FAS, MI (ANCOVA) 
#2 mFAS, OC (MMRM) 
#3 PPS, OC (MMRM) 
#4 Randomized Set, OC (MMRM) 
#5 FAS, OC (MMRM), adjusting for the 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 40 of 66 
Efficacy Endpoint 
Primary/Main 
Analysis 
Sensitivity Analysis 
SALT I stratification variable and cohort 
#6 FAS, OC (MMRM), including Cohort 2 
only and adjusting for the SALT I 
stratification variable 
#7 FAS, OC (MMRM), excluding Etrasimod 
3 mg and adjusting for the SALT I 
stratification variable and cohort 
Binary secondary 
endpoints in SALT I 
FAS, NRI (CMH) 
#1 FAS, MI (CMH),  
#2 mFAS, NRI (CMH) 
#3 PPS, NRI (CMH) 
#4 FAS, OC (CMH) 
#5 Randomized Set, NRI (CMH) 
Exploratory  
Change and percent 
change from Baseline 
in SALT I over time 
Change from Baseline 
in AASIS at Week 24 
Change from Baseline 
in AA-QLI at Week 
24 
Percent change from 
baseline in peripheral 
lymphocyte counts at 
Week 24 
FAS, OC (MMRM) 
 
 
Binary exploratory 
endpoints in SALT I 
over time 
FAS, NRI (CMH) 
 
 
Change and percent 
change from Baseline 
in SALT I by blinded 
FAS, OC (ANCOVA) 
 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 41 of 66 
Efficacy Endpoint 
Primary/Main 
Analysis 
Sensitivity Analysis 
central review at 
Week 24 
Binary exploratory 
endpoints in SALT I 
by blinded central 
review at Week 24 
FAS, NRI (CMH) 
 
 
Other  
Binary other 
endpoints in SALT I 
over time 
FAS, NRI (CMH) 
 
Change from Baseline 
in AASIS at Week 12 
Change from Baseline 
in AA-QLI at Week 
12 
Percent change from 
baseline in peripheral 
lymphocyte counts 
over time 
FAS, OC (MMRM) 
 
 
OLE Period 
Change and percent 
change from DB and 
OLE Baseline in 
SALT I over time 
Change from DB and 
OLE Baseline in 
AASIS over time 
Change from DB and 
OLE Baseline in AA-
QLI over time 
OLE FAS, OC 
(Descriptive) 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 42 of 66 
Efficacy Endpoint 
Primary/Main 
Analysis 
Sensitivity Analysis 
Change from DB and 
OLE Baseline in 
peripheral lymphocyte 
counts over time 
Proportion-based 
exploratory endpoints 
in SALT I over time 
#1: OLE FAS, OC 
(Descriptive) 
#2: OLE FAS, NRI 
(Descriptive) 
 
 
11 SAFETY ANALYSIS 
Unless otherwise indicated, safety data will be summarized overall and by treatment group and 
visit, when applicable, for each study period separately, based on the SAF for the DB Treatment 
Period and OLE SAF for the OLE Period.  
11.1 Adverse Events 
AEs will be coded according to the MedDRA, Version 24.1, and will be summarized overall and 
by treatment group for across both study periods and for each study period separately. 
Treatment emergent adverse events (TEAEs) are defined as any AEs with onset date during or 
after the first study treatment dose. See Appendix 2 for handling of completely or partially missing 
dates for AEs. AEs starting on the first study treatment dosing date and related to a pre-dose study 
assessment will not be considered as TEAE.  In the case where it is not possible to define an AE 
as treatment emergent or not, the AE will be classified as treatment emergent. 
Furthermore, TEAEs will be assigned to the DB Treatment Period or OLE Period depending on 
their onset date – if the AE onset date is before the date of first dose in OLE, the AE will be 
assigned to the DB Treatment Period AE. If the AE had an onset on or after the date of first dose 
in OLE, the AE will be assigned to an OLE Period. AEs starting on the Week 24 and related to a 
pre-dose study assessment will be assigned to DB Treatment Period. 
An overall summary table of adverse events will be provided. The number of events and the 
frequency count and percentage of subjects who experienced an AE, TEAE, TEAE by maximum 
reported relationship, TEAE by maximum reported Common Terminology Criteria for Adverse 
Events (CTCAE) severity, serious AE (SAE), serious TEAE, TEAE leading to study drug 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 43 of 66 
discontinuation, TEAE leading to study discontinuation, treatment emergent AE of Special Interest 
(AESI) and AE leading to death will be presented. 
Of note, prior to each database lock (primary and final), AESIs will be flagged as such by the 
Sponsor Clinical Development/Medical teams from the subset of AEs that will have been classified 
programmatically as Targeted Medical Events (TMEs) based on an exhaustive list of SOCs and 
PTs provided by the Sponsor. The list of AEs deemed as AESIs will be finalized prior to each 
database lock.  
Unless otherwise specified, a subject experiencing a TEAE multiple times within the same PT will 
be counted only once for the corresponding PT. Similarly, if a subject experiencing multiple 
TEAEs within the same SOC, the subject will be counted only once for that SOC. TEAEs will be 
sorted by decreasing order of total frequency of SOC and PT within each SOC. 
Frequency and percentage of subjects who experience TEAE will be summarized by PT and also 
by SOC and PT.  
Frequency and percentage of subjects who experience TEAE will be summarized by SOC, PT, 
and maximum reported relationship (treatment-related or not treatment-related). A treatment-
related AE is defined as any TEAE that is assessed by the Investigator as Related or Probably 
Related to study treatment. TEAE that is assessed as Unlikely Related or Not Related will be 
defined as not treatment-related. TEAE with an unknown relationship will be considered as 
treatment-related. 
Frequency and percentage of subjects who experience TEAE will be summarized by SOC, PT, 
and maximum reported severity. The severity will be graded according to the CTCAE (Grade 1 - 
mild, Grade 2 - moderate, Grade 3 - severe, Grade 4 – life-threatening or Grade 5 - death).  If a 
subject experience more than one TEAE within different severity categories within the same 
SOC/PT, only the worst case (maximum reported severity) will be reported. TEAE with an 
unknown severity will be considered as severe. 
Frequency and percentage of subjects who experience serious TEAE will be summarized by SOC 
and PT within SOC.  
Frequency and percentage of subjects who experience treatment emergent AESI will be 
summarized by AESI category and PT. 
Frequency and percentage of subjects who experience non-serious TEAE will be summarized by 
SOC and PT for DB and OLE period separately.  
Listings of all AEs, all AEs leading to death, all serious AEs, all TEAEs leading to study drug 
discontinuation, and all TEAEs leading to study discontinuation will be provided. 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 44 of 66 
11.2 Clinical Laboratory 
For quantitative laboratory test, descriptive statistics will be presented for data related to chemistry, 
hematology (including coagulation) and quantitative urinalysis. Observed values and change from 
baseline values will be presented for each post-baseline visit. Frequencies and percentages of 
subjects in each result category will be provided for qualitative urinalysis data. 
Shift tables from baseline to each post-baseline visits describing shifts to abnormality (low or high) 
will be provided as well. Only subjects with a baseline result and a result at the specified visit for 
the parameter will be considered. 
Separate listings of all data for chemistry, hematology (including coagulation), urinalysis and 
pregnancy test will be provided. 
In addition, separate listings of data for chemistry, hematology (including coagulation), and 
urinalysis will be provided for each parameter where a subject had at least one abnormal result. 
Incidence of hepatic enzyme elevations will be summarized by visit. The following hepatic 
enzyme elevations will be reported: 
 ALT > 1, >2, > 3, > 5, > 8, > 10, and > 20 x upper limit of normal (ULN) 
 AST > 1, > 2, > 3, > 5, > 8, > 10, and > 20 x ULN 
 ALT or AST > 3, > 5, > 10, and > 20 x ULN 
 ALP > 1, > 1.5, > 2, > 3, > 5, > 8, > 10, and > 20 x ULN 
 GGT > 1, > 2, > 3, > 5, > 8, > 10, and > 20 x ULN 
 Total bilirubin >1, > 1.5, >2, and >3 x ULN 
 ALT or AST > 3 x ULN AND total bilirubin > 1.5 x ULN 
 ALT or AST > 3 x ULN AND total bilirubin > 2 x ULN 
 ALT or AST > 3 x ULN AND ALP > 1.5 x ULN 
 Symptomatic elevation in ALT or AST, defined as an ALT or AST elevation > 3 x ULN 
in temporal association with nausea, vomiting, anorexia, abdominal pain, or fatigue, where 
temporal association is defined as onset of symptoms within +/- 14 days of the elevation. 
Incidence of absolute lymphocyte count decrease at any time during a study period (post-dose on 
Day 1 to pre-dose on Week 24 for the DB Treatment Period and post-dose on Week 24 to the 2nd 
SFU visit for the OLE Period) will be summarized.  The following categories will be presented: 
 Grade 1, defined as an absolute lymphocyte count ≥ 0.8 to < 1.02 x 109/L 
 Grade 2, defined as an absolute lymphocyte count ≥ 0.5 to < 0.8 x 109/L 
 Grade 3, defined as an absolute lymphocyte count ≥ 0.2 to < 0.5 x 109/L 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 45 of 66 
 Grade 4, defined as an absolute lymphocyte count ≥ 0.0 to < 0.2 x 109/L 
 Any Grade 3 or 4 
 Any Grade 1 to 4 
11.3 Vital Signs 
Descriptive statistics will be presented for data related to vital signs (systolic blood pressure 
diastolic blood pressure, pulse rate, respiratory rate, temperature, and weight). Observed values, 
and change from baseline values will be presented for each post-baseline assessment.  
At nominal Day 1 and Week 24 visits, descriptive statistics for the observed and change from pre-
dose measurement in vital signs will be presented at pre-dose (observed values only), 1 hour, 2 
hours, 3 hours, and 4 hours after treatment initiation. Frequency count and percentage will also be 
reported for the following cardiac monitoring categories: 
 Heart rate (HR) < 40 bpm at any time during the first 4 hours post-dose 
 HR < 50 bpm at any time during the first 4 hours post-dose 
 HR < 40 bpm at the 4-hour post-dose timepoint 
 HR < 50 bpm at the 4-hour post-dose timepoint 
A listing of all vital sign assessments will be provided. 
11.4 Physical Examination 
Clinically significant physical examination abnormalities will be recorded and summarized as 
medical history or AEs, as applicable. 
11.5 Electrocardiogram 
Descriptive statistics will be presented for data related to ECGs ([HR, RR, PR, QRS, QT, QTcB, 
and QTcF intervals). Observed values and change from baseline values will be presented for each 
post-baseline visit.  
At nominal Day 1 and Week 24 visits, descriptive statistics for the observed values and change 
from pre-dose measurement in ECG parameters will be presented at pre-dose (observed values 
only) and 4 hours after treatment initiation. Frequency count and percentage will also be reported 
by treatment group for the following cardiac monitoring categories: 
 HR < 40 bpm at the 4-hour post-dose timepoint 
 HR < 50 bpm at the 4-hour post-dose timepoint 
Additionally, an outlier analysis will be performed on all subjects with QTcF values > 500 msec 
or change from pre-dose measurement > 60 msec in the absence of pre-dose ECG abnormalities 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 46 of 66 
that preclude accurate surface ECG assessment of ventricular repolarization (eg, bundle branch 
block); frequency and percentage of those subjects with QTcF values > 500 msec or change from 
pre-dose to 4-hour post-dose > 60 msec will be summarized for nominal Day 1 and Week 24 visit.  
A listing of all ECG assessments will be provided. Overall interpretation with abnormal findings 
will be presented in the listing as well. 
11.6 Pulmonary Function Test 
Pulmonary function tests (PFTs) will be performed according to the Schedules of Assessments 
(refer to Appendix 1 and Appendix 2 in the protocol) and include forced expiratory volume at 1 
second (FEV1), forced vital capacity (FVC), and forced expiratory flow at 25 to 75% (FEF 25-75) 
measurements. Where locally available, diffusing capacity of the lungs for carbon monoxide 
(DLCO) measurements will also be performed. 
The observed values and change from baseline values in each of the following PFT measurements 
will be summarized using descriptive statistics by visit: 
 FEV1 (L) 
 % Predicted FEV1 
 FVC (L) 
 % Predicted FVC 
 FEV1/FVC ratio 
 % Predicted FEV1/FVC ratio 
 FEF 25-75 (L/sec) 
 % Predicted FEF 25-75 
 Total Lung Capacity (TLC; L) 
 % Predicted TLC 
 DLCO (mL/min/mmHg) 
 % Predicted DLCO 
Frequency count and percentage of subjects with markedly abnormal values will be reported by 
visit as well as at any time after baseline for each of the following predefined markedly abnormal 
criteria separately:  
 % Predicted FEV1 < 50% 
 % Predicted FVC < 50% 
 % Predicted FEV1/FVC ratio < 50% 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 47 of 66 
Incidence of subjects with potentially important PFT abnormal measurements will also be 
identified using the criteria below and summarized similarly: 
 Decrease from DB baseline > 20% in FEV1, i.e., percent change from DB baseline < -20% 
 Decrease from DB baseline > 20% in FVC, i.e., percent change from DB baseline < -20% 
 Decrease from DB baseline > 20% in DLCO, i.e., percent change from DB baseline <  
-20% 
Shift tables from baseline to each scheduled post-baseline in Investigators’ overall interpretation 
of the PFT (normal, abnormal NCS or abnormal CS) will be provided as well. Only subjects with 
a baseline result and a result at the specified post-baseline visit will be considered. 
All PFT results and overall interpretation of PFTs will be listed and markedly, potentially 
important abnormal values will be flagged.  
11.7 Ophthalmoscopy and Optical Coherence Tomography 
A complete ophthalmoscopy and optical coherence tomography (OCT) assessment will be 
performed according to the Schedule of Assessments (refer to Appendix 1 and Appendix 2 in the 
protocol).  
Frequency count and percentage of subjects in each result category of each ophthalmic exam 
test/part of the eye will be reported by visit. Observed values and change from baseline values in 
central foveal thickness (µm) and intraocular pressure (mmHg) will also be summarized using 
descriptive statistics by visit for each eye separately.  
Frequency count and percentage of subjects with markedly increased central foveal thickness (as 
defined below) will also be reported by visit as well as at any time post-baseline: 
 Increase from DB baseline in either eye > 40 µm in central foveal thickness 
A listing of ophthalmoscopy (best corrected visual acuity- right eye, left eye, and combined) and 
all OCT assessments will be provided and markedly increased in central foveal thickness will be 
flagged. Additionally, separate listings for ophthalmic examination (eye pressure, slit lamp and 
dilated fundus) will also be provided.   
11.8 Safety Analyses during the Open-Label Extension Period  
Safety analyses will follow general considerations in previous sections 11.1 to section 11.7 
with the following exceptions: 
 Summaries will be provided by visit based on the OLE FAS overall, for the three 
treatment groups in the OLE period (OLE 2mg, OLE 2mg/3mg, OLE 3mg), and the three 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 48 of 66 
randomized treatment groups in the DB Treatment Period (DB 2mg, DB 3mg, DB 
placebo). 
 Change from Baseline will be summarized using change from OLE Baseline and DB 
Baseline (refer to Section 4.1).  


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 49 of 66 
12 CHANGES TO THE ANALYSIS FROM THE PROTOCOL 
Table 4: Summary of Changes to the Analysis from the Protocol 
Description of the change 
Rationale for change 
Original text: 
Baseline for the Open-Label Extension Period is 
defined as the last measurement prior to the first 
etrasimod dose started at Week 24. 
 
Changed to: 
The OLE Period Baseline (OLE Baseline) will be 
defined as the last nonmissing assessment prior to the 
first etrasimod dose started at Week 24 for the 
subject who received placebo during the DB 
Treatment Period. For subjects who were on 
etrasimod in the DB Treatment Period, the OLE 
Baseline will be taken from the DB Baseline.  
To clarify baseline for the Open-Label 
Extension Period for safety and 
efficacy analyses for the OLE Period.  
Full Analysis Set (FAS): The FAS includes all 
randomized subjects in the Randomized Set with a 
SALT I < 95 at Baseline, irrespective of whether they 
received any study drug. 
 
Changed to 
The FAS includes all randomized subjects with a 
SALT I < 95 at Baseline who received at least 1 dose 
of study drug. 
To prevent bias in the main analysis of 
the proportion-based secondary 
endpoints using non-responder 
imputation, the randomized subjects 
who failure to take at least one dose of 
trial medication will be excluded from 
the full analysis sets. 
The Per Protocol Set consists of all subjects in the 
FAS who adhere to the protocol. 
 
Changed to:  
The Per Protocol Set consists of all subjects in the 
FAS with no major protocol deviations potentially 
having an impact on the SALT I-related primary and 
secondary efficacy endpoints. 
To clarify that only subjects with 
major PDs potentially having an 
impact on the efficacy endpoints will 
be excluded from the PPS, not all 
subjects with at least one PD. 
Add OLE Full Analysis Set (OLE FAS): 
 
The OLE FAS includes all subjects with a SALT I < 
95 at Baseline who received at least one dose of 
study drug in the Open-Label Extension Period. All 
efficacy analysis in the OLE Period will be 
performed over OLE FAS. 
To be consistent with analysis set with 
SALT I < 95 for the efficacy analysis 
in the Double-Blind period. All safety 
analysis will still be based on OLE 
Safety Set. 
 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 50 of 66 
13 REFERENCES 
Brand, J. P. L. (1999). Development, Implementation, and Evaluation of Multiple Imputation 
Strategies for the Statistical Analysis of Incomplete Data Sets. Ph. D. thesis, Erasmus University. 
Heitjan, F., and Little, R. J. A. (1991). Multiple Imputation for the Fatal Accident Reporting 
System. Journal of the Royal Statistical Society, Series C 40:13-29. 
Schenker, N., and Taylor, J. M. G. (1996). Partially Parametric Techniques for Multiple 
Imputation. Computational Statistics and Data Analysis 22:425-446. 
Van Buuren, S. (2007). Multiple Imputation of Discrete and Continuous Data by Fully Conditional 
Specification. Statistical Methods in Medical Research 16:219-242. 
 
 




Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 52 of 66 
 
Data presentation for OLE Period 
DB Treatment Group 
OLE Treatment Group 
Total 
Etrasimod 
2 mg 
Etrasimod 
3 mg 
Placebo 
Etrasimod 
2 mg^ 
Etrasimod 
2 mg-3 mg* 
Etrasimod 
3 mg# 
^ Cohort 1 subjects who completed or discontinued from OLE before protocol amendment 2.0/2.1 
implementation as well as Cohort 1 and 2 subjects who discontinued from OLE before transitioning to 3 
mg . 
* Cohort 1 subjects who took 2 mg and transitioned to 3 mg in OLE after treatment initiation. 
# Cohort 1 subjects who took 2 mg for a week and transitioned to 3 mg in OLE after treatment initiation 
and Cohort 2 subjects. 
 
 


Statistical Analysis Plan 
 
Protocol Number: APD334-205 (C5041008)  
 
 
                  
 
Page 53 of 66 
Appendix 2 Algorithm for Imputation of Start/End Date of Adverse Events and 
Prior/Concomitant Medications 
Event Start Date Imputation 
 Imputation of event end date should be done before imputation of event start date.  
 Completely missing: Impute to the first study treatment date. 
 Missing day and month: Impute to January 1st, unless year is the same as year of first study 
treatment dose then impute to the first study treatment date. 
 Missing day: Impute to the 1st of the month, unless month and year are the same as month 
and year of first study treatment dose then impute to the first study treatment date. 
 If imputed event start date is after event end date (imputed or not), set the event start date 
to the imputed event end date. 
 
Event End Date Imputation 
 Completely Missing (not flag “ongoing”): Impute to the last contact date. 
 Missing day and month: Impute to December 31st, unless year is the same as last contact 
date then impute to the last contact date. 
 Missing day: Impute to the last day of the month, unless year and month are the same as 
year and month of last contact date then impute to the last contact date. 
 






























Signer Events
Signature
Timestamp
Security Level: Email, Account Authentication 
(Required), Login with SSO
Signature Adoption: Pre-selected Style
Signature ID: 
With Signing Authentication via DocuSign password
With Signing Reasons (on each tab): 
   I approve this document
Sent: 2/23/2023 10:07:51 AM
Viewed: 2/23/2023 4:38:06 PM 
Signed: 2/27/2023 3:01:56 AM
Electronic Record and Signature Disclosure: 
      Accepted: 2/27/2023 3:01:34 AM
      
Security Level: Email, Account Authentication 
(Required), Login with SSO
Signature Adoption: Pre-selected Style
Signature ID: 
Using IP Address: 
With Signing Authentication via DocuSign password
With Signing Reasons (on each tab): 
   I approve this document
Sent: 2/27/2023 3:02:01 AM
Viewed: 2/27/2023 8:14:25 AM 
Signed: 2/27/2023 8:15:37 AM
Electronic Record and Signature Disclosure: 
      Accepted: 2/27/2023 8:14:25 AM
      
In Person Signer Events
Signature
Timestamp
Editor Delivery Events
Status
Timestamp
Agent Delivery Events
Status
Timestamp
Intermediary Delivery Events
Status
Timestamp
Certified Delivery Events
Status
Timestamp
Carbon Copy Events
Status
Timestamp
Witness Events
Signature
Timestamp
Notary Events
Signature
Timestamp
Envelope Summary Events
Status
Timestamps
Envelope Sent
Hashed/Encrypted
2/22/2023 7:18:29 PM
Certified Delivered
Security Checked
2/27/2023 8:14:25 AM
Signing Complete
Security Checked
2/27/2023 8:15:37 AM
Completed
Security Checked
2/27/2023 8:15:37 AM
Payment Events
Status
Timestamps
CCI
CCI
CCI
CCI
CCI
CCI
CCI
PPD
PPD


Electronic Record and Signature Disclosure


ELECTRONIC RECORD AND SIGNATURE DISCLOSURE  
From time to time, 
 (we, us or Company) may be required by law to 
provide to you certain written notices or disclosures. Described below are the terms and 
conditions for providing to you such notices and disclosures electronically through the DocuSign 
system. Please read the information below carefully and thoroughly, and if you can access this 
information electronically to your satisfaction and agree to this Electronic Record and Signature 
Disclosure (ERSD), please confirm your agreement by selecting the check-box next to ‘I agree to 
use electronic records and signatures’ before clicking ‘CONTINUE’ within the DocuSign 
system. 
 
Getting paper copies  
At any time, you may request from us a paper copy of any record provided or made available 
electronically to you by us. You will have the ability to download and print documents we send 
to you through the DocuSign system during and immediately after the signing session and, if you 
elect to create a DocuSign account, you may access the documents for a limited period of time 
(usually 30 days) after such documents are first sent to you. After such time, if you wish for us to 
send you paper copies of any such documents from our office to you, you will be charged a 
$0.00 per-page fee. You may request delivery of such paper copies from us by following the 
procedure described below. 
 
Withdrawing your consent  
If you decide to receive notices and disclosures from us electronically, you may at any time 
change your mind and tell us that thereafter you want to receive required notices and disclosures 
only in paper format. How you must inform us of your decision to receive future notices and 
disclosure in paper format and withdraw your consent to receive notices and disclosures 
electronically is described below. 
 
Consequences of changing your mind  
If you elect to receive required notices and disclosures only in paper format, it will slow the 
speed at which we can complete certain steps in transactions with you and delivering services to 
you because we will need first to send the required notices or disclosures to you in paper format, 
and then wait until we receive back from you your acknowledgment of your receipt of such 
paper notices or disclosures. Further, you will no longer be able to use the DocuSign system to 
receive required notices and consents electronically from us or to sign electronically documents 
from us. 
 
All notices and disclosures will be sent to you electronically  
Electronic Record and Signature Disclosure created on: 5/27/2022 12:50:34 PM
PPD
PPD


Unless you tell us otherwise in accordance with the procedures described herein, we will provide 
electronically to you through the DocuSign system all required notices, disclosures, 
authorizations, acknowledgements, and other documents that are required to be provided or made 
available to you during the course of our relationship with you. To reduce the chance of you 
inadvertently not receiving any notice or disclosure, we prefer to provide all of the required 
notices and disclosures to you by the same method and to the same address that you have given 
us. Thus, you can receive all the disclosures and notices electronically or in paper format through 
the paper mail delivery system. If you do not agree with this process, please let us know as 
described below. Please also see the paragraph immediately above that describes the 
consequences of your electing not to receive delivery of the notices and disclosures 
electronically from us. 
 
How to contact 
  
You may contact us to let us know of your changes as to how we may contact you electronically, 
to request paper copies of certain information from us, and to withdraw your prior consent to 
receive notices and disclosures electronically as follows: 
To contact us by email send messages 
 
 
To advise 
 of your new email address  
To let us know of a change in your email address where we should send notices and disclosures 
electronically to you, you must send an email message 
 and in 
the body of such request you must state: your previous email address, your new email 
address.  We do not require any other information from you to change your email address.  
If you created a DocuSign account, you may update it with your new email address through your 
account preferences.  
 
To request paper copies from 
  
To request delivery from us of paper copies of the notices and disclosures previously provided 
by us to you electronically, you must send us an email 
 and in the 
body of such request you must state your email address, full name, mailing address, and 
telephone number.  
 
To withdraw your consent with 
  
To inform us that you no longer wish to receive future notices and disclosures in electronic 
format you may: 
PPD
PPD
PPD
PPD
PPD
PPD
PPD


i. decline to sign a document from within your signing session, and on the subsequent page, 
select the check-box indicating you wish to withdraw your consent, or you may; 
ii. send us an email to 
and in the body of such request you must 
state your email, full name, mailing address, and telephone number. We do not need any other 
information from you to withdraw consent..  The consequences of your withdrawing consent for 
online documents will be that transactions may take a longer time to process.. 
 
Required hardware and software  
The minimum system requirements for using the DocuSign system may change over time. The 
current system requirements are found here: https://support.docusign.com/guides/signer-guide-
signing-system-requirements.  
 
Acknowledging your access and consent to receive and sign documents electronically  
To confirm to us that you can access this information electronically, which will be similar to 
other electronic notices and disclosures that we will provide to you, please confirm that you have 
read this ERSD, and (i) that you are able to print on paper or electronically save this ERSD for 
your future reference and access; or (ii) that you are able to email this ERSD to an email address 
where you will be able to print on paper or save it for your future reference and access. Further, 
if you consent to receiving notices and disclosures exclusively in electronic format as described 
herein, then select the check-box next to ‘I agree to use electronic records and signatures’ before 
clicking ‘CONTINUE’ within the DocuSign system. 
By selecting the check-box next to ‘I agree to use electronic records and signatures’, you confirm 
that: 
 
You can access and read this Electronic Record and Signature Disclosure; and 
 
You can print on paper this Electronic Record and Signature Disclosure, or save or send 
this Electronic Record and Disclosure to a location where you can print it, for future 
reference and access; and 
 
Until or unless you notify 
 as described above, you consent to 
receive exclusively through electronic means all notices, disclosures, authorizations, 
acknowledgements, and other documents that are required to be provided or made 
available to you by 
 during the course of your relationship with 
 
PPD
PPD
PPD
PPD