# -*- coding: utf-8 -*- """using_dataset_hugginface.ipynb Automatically generated by Colaboratory. Original file is located at https://colab.research.google.com/drive/1soGxkZu4antYbYG23GioJ6zoSt_GhSNT """ """**Hugginface loggin for push on Hub**""" ### # # Used bibliografy: # https://huggingface.co/learn/nlp-course/chapter5/5 # ### import os import time import math from huggingface_hub import login from datasets import load_dataset, concatenate_datasets from functools import reduce from pathlib import Path import pandas as pd # Load model directly from transformers import AutoTokenizer, AutoModelForCausalLM HF_TOKEN = '' DATASET_TO_LOAD = 'CoWeSe.txt' EXAMPLE_DATASET_TO_LOAD = 'example.txt' DATASET_TO_UPDATE = 'somosnlp/spanish_medica_llm' #Loggin to Huggin Face login(token = HF_TOKEN) royalListOfCode = {} issues_path = 'dataset' tokenizer = AutoTokenizer.from_pretrained("DeepESP/gpt2-spanish-medium") DATASET_SOURCE_ID = '4' #Read current path path = Path(__file__).parent.absolute() ''' Bibliografy: https://www.w3schools.com/python/python_mysql_getstarted.asp https://www.w3schools.com/python/python_mysql_select.as ''' # raw_text: Texto asociado al documento, pregunta, caso clínico u otro tipo de información. # topic: (puede ser healthcare_treatment, healthcare_diagnosis, tema, respuesta a pregunta, o estar vacío p.ej en el texto abierto) # speciality: (especialidad médica a la que se relaciona el raw_text p.ej: cardiología, cirugía, otros) # raw_text_type: (puede ser caso clínico, open_text, question) # topic_type: (puede ser medical_topic, medical_diagnostic,answer,natural_medicine_topic, other, o vacio) # source: Identificador de la fuente asociada al documento que aparece en el README y descripción del dataset. # country: Identificador del país de procedencia de la fuente (p.ej.; ch, es) usando el estándar ISO 3166-1 alfa-2 (Códigos de país de dos letras.). cantemistDstDict = { 'raw_text': '', 'topic': '', 'speciallity': '', 'raw_text_type': 'open_text', 'topic_type': '', 'source': DATASET_SOURCE_ID, 'country': 'es', 'document_id': '' } totalOfTokens = 0 corpusToLoad = [] countCopySeveralDocument = 0 counteOriginalDocument = 0 FILE_TO_PROCESS = DATASET_TO_LOAD if not os.path.exists(str(path) + os.sep + FILE_TO_PROCESS): FILE_TO_PROCESS = EXAMPLE_DATASET_TO_LOAD with open( str(path) + os.sep + FILE_TO_PROCESS,encoding='utf8') as file: #linesInFile = file.readlines() paragraph = '' while True: linesInFile = file.readlines(8192) if not linesInFile: break for index, iLine in enumerate(linesInFile): text = linesInFile[index] if len(linesInFile[index]) > 1 else '' paragraph += text + ' ' if text == '': counteOriginalDocument += 1 idFile = str(counteOriginalDocument) newCorpusRow = cantemistDstDict.copy() listOfTokens = tokenizer.tokenize(paragraph) currentSizeOfTokens = len(listOfTokens) totalOfTokens += currentSizeOfTokens newCorpusRow['raw_text'] = paragraph newCorpusRow['document_id'] = idFile corpusToLoad.append(newCorpusRow) paragraph = '' paragraph = '' df = pd.DataFrame.from_records(corpusToLoad) if os.path.exists(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl"): os.remove(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl") df.to_json(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl", orient="records", lines=True) print( f"Downloaded all the issues for {DATASET_TO_LOAD}! Dataset stored at {issues_path}/spanish_medical_llms.jsonl" ) print(' On dataset there are as document ', counteOriginalDocument) print(' On dataset there are as copy document ', countCopySeveralDocument) print(' On dataset there are as size of Tokens ', totalOfTokens) file = Path(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl") # or Path('./doc.txt') size = file.stat().st_size print ('File size on Kilobytes (kB)', size >> 10) # 5242880 kilobytes (kB) print ('File size on Megabytes (MB)', size >> 20 ) # 5120 megabytes (MB) print ('File size on Gigabytes (GB)', size >> 30 ) # 5 gigabytes (GB) #Once the issues are downloaded we can load them locally using our local_spanish_dataset = load_dataset("json", data_files=f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl", split="train") try: spanish_dataset = load_dataset(DATASET_TO_UPDATE, split="train") spanish_dataset = concatenate_datasets([spanish_dataset, local_spanish_dataset]) except Exception: print ('<=== Error ===>') spanish_dataset = local_spanish_dataset spanish_dataset.push_to_hub(DATASET_TO_UPDATE) print(local_spanish_dataset)