{ "nbformat": 4, "nbformat_minor": 0, "metadata": { "colab": { "provenance": [], "gpuType": "T4" }, "kernelspec": { "name": "python3", "display_name": "Python 3" }, "language_info": { "name": "python" }, "accelerator": "GPU" }, "cells": [ { "cell_type": "code", "source": [ "!git clone https://github.com/dionis/SpanishMedicaLLM.git" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "tFtxsPeDsZTE", "outputId": "1b9547d0-62b4-4ab9-94f2-3ff767bb1728" }, "execution_count": 1, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ "Cloning into 'SpanishMedicaLLM'...\n", "remote: Enumerating objects: 1410, done.\u001b[K\n", "remote: Counting objects: 100% (1375/1375), done.\u001b[K\n", "remote: Compressing objects: 100% (908/908), done.\u001b[K\n", "remote: Total 1410 (delta 502), reused 1259 (delta 417), pack-reused 35\u001b[K\n", "Receiving objects: 100% (1410/1410), 48.85 MiB | 9.93 MiB/s, done.\n", "Resolving deltas: 100% (506/506), done.\n" ] } ] }, { "cell_type": "code", "source": [ "cd SpanishMedicaLLM/" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "R7q87k4lvKN0", "outputId": "e2e32e14-87e0-47d9-c77d-c83f4fe61040" }, "execution_count": 2, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ "/content/SpanishMedicaLLM\n" ] } ] }, { "cell_type": "code", "source": [ "cd finetuning/hugginface_dataset/spanish_biomedical_craw_corpus/" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "MNleOUfBvOWA", "outputId": "f45dbd6b-583e-4c51-d49d-741ec721b738" }, "execution_count": 3, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ "/content/SpanishMedicaLLM/finetuning/hugginface_dataset/spanish_biomedical_craw_corpus\n" ] } ] }, { "cell_type": "code", "source": [ "!git checkout 3-develop_a_finetunning_test_on_training_process_with_QLora-Epfl" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "kGjsbyxavXSS", "outputId": "3c6496d6-2dc7-4176-cefb-78872a3a4d6e" }, "execution_count": 4, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ "Branch '3-develop_a_finetunning_test_on_training_process_with_QLora-Epfl' set up to track remote branch '3-develop_a_finetunning_test_on_training_process_with_QLora-Epfl' from 'origin'.\n", "Switched to a new branch '3-develop_a_finetunning_test_on_training_process_with_QLora-Epfl'\n" ] } ] }, { "cell_type": "code", "source": [ "from urllib import request\n", "URL = 'https://zenodo.org/records/5513237/files/CoWeSe.txt?download=1'\n", "response = request.urlretrieve(URL, \"CoWeSe.txt\")" ], "metadata": { "id": "XRsE_iw1JUQX" }, "execution_count": 5, "outputs": [] }, { "cell_type": "code", "source": [ "!pip install datasets" ], "metadata": { "colab": { "base_uri": "https://localhost:8080/" }, "id": "0WGb685FxA1u", "outputId": "5e72e20e-727a-4e49-f77a-022e94c3e968" }, "execution_count": 6, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ "Collecting datasets\n", " Downloading datasets-2.18.0-py3-none-any.whl (510 kB)\n", "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m510.5/510.5 kB\u001b[0m \u001b[31m9.0 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", "\u001b[?25hRequirement already satisfied: filelock in /usr/local/lib/python3.10/dist-packages (from datasets) (3.13.3)\n", "Requirement already satisfied: numpy>=1.17 in /usr/local/lib/python3.10/dist-packages (from datasets) (1.25.2)\n", "Requirement already satisfied: pyarrow>=12.0.0 in /usr/local/lib/python3.10/dist-packages (from datasets) (14.0.2)\n", "Requirement already satisfied: pyarrow-hotfix in /usr/local/lib/python3.10/dist-packages (from datasets) (0.6)\n", "Collecting dill<0.3.9,>=0.3.0 (from datasets)\n", " Downloading dill-0.3.8-py3-none-any.whl (116 kB)\n", "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m116.3/116.3 kB\u001b[0m \u001b[31m14.2 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", "\u001b[?25hRequirement already satisfied: pandas in /usr/local/lib/python3.10/dist-packages (from datasets) (1.5.3)\n", "Requirement already satisfied: requests>=2.19.0 in /usr/local/lib/python3.10/dist-packages (from datasets) (2.31.0)\n", "Requirement already satisfied: tqdm>=4.62.1 in /usr/local/lib/python3.10/dist-packages (from datasets) (4.66.2)\n", "Collecting xxhash (from datasets)\n", " Downloading xxhash-3.4.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (194 kB)\n", "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m194.1/194.1 kB\u001b[0m \u001b[31m19.1 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", "\u001b[?25hCollecting multiprocess (from datasets)\n", " Downloading multiprocess-0.70.16-py310-none-any.whl (134 kB)\n", "\u001b[2K \u001b[90m━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━\u001b[0m \u001b[32m134.8/134.8 kB\u001b[0m \u001b[31m16.8 MB/s\u001b[0m eta \u001b[36m0:00:00\u001b[0m\n", "\u001b[?25hRequirement already satisfied: fsspec[http]<=2024.2.0,>=2023.1.0 in /usr/local/lib/python3.10/dist-packages (from datasets) (2023.6.0)\n", "Requirement already satisfied: aiohttp in /usr/local/lib/python3.10/dist-packages (from datasets) (3.9.3)\n", "Requirement already satisfied: huggingface-hub>=0.19.4 in /usr/local/lib/python3.10/dist-packages (from datasets) (0.20.3)\n", "Requirement already satisfied: packaging in /usr/local/lib/python3.10/dist-packages (from datasets) (24.0)\n", "Requirement already satisfied: pyyaml>=5.1 in /usr/local/lib/python3.10/dist-packages (from datasets) (6.0.1)\n", "Requirement already satisfied: aiosignal>=1.1.2 in /usr/local/lib/python3.10/dist-packages (from aiohttp->datasets) (1.3.1)\n", "Requirement already satisfied: attrs>=17.3.0 in /usr/local/lib/python3.10/dist-packages (from aiohttp->datasets) (23.2.0)\n", "Requirement already satisfied: frozenlist>=1.1.1 in /usr/local/lib/python3.10/dist-packages (from aiohttp->datasets) (1.4.1)\n", "Requirement already satisfied: multidict<7.0,>=4.5 in /usr/local/lib/python3.10/dist-packages (from aiohttp->datasets) (6.0.5)\n", "Requirement already satisfied: yarl<2.0,>=1.0 in /usr/local/lib/python3.10/dist-packages (from aiohttp->datasets) (1.9.4)\n", "Requirement already satisfied: async-timeout<5.0,>=4.0 in /usr/local/lib/python3.10/dist-packages (from aiohttp->datasets) (4.0.3)\n", "Requirement already satisfied: typing-extensions>=3.7.4.3 in /usr/local/lib/python3.10/dist-packages (from huggingface-hub>=0.19.4->datasets) (4.10.0)\n", "Requirement already satisfied: charset-normalizer<4,>=2 in /usr/local/lib/python3.10/dist-packages (from requests>=2.19.0->datasets) (3.3.2)\n", "Requirement already satisfied: idna<4,>=2.5 in /usr/local/lib/python3.10/dist-packages (from requests>=2.19.0->datasets) (3.6)\n", "Requirement already satisfied: urllib3<3,>=1.21.1 in /usr/local/lib/python3.10/dist-packages (from requests>=2.19.0->datasets) (2.0.7)\n", "Requirement already satisfied: certifi>=2017.4.17 in /usr/local/lib/python3.10/dist-packages (from requests>=2.19.0->datasets) (2024.2.2)\n", "Requirement already satisfied: python-dateutil>=2.8.1 in /usr/local/lib/python3.10/dist-packages (from pandas->datasets) (2.8.2)\n", "Requirement already satisfied: pytz>=2020.1 in /usr/local/lib/python3.10/dist-packages (from pandas->datasets) (2023.4)\n", "Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.10/dist-packages (from python-dateutil>=2.8.1->pandas->datasets) (1.16.0)\n", "Installing collected packages: xxhash, dill, multiprocess, datasets\n", "Successfully installed datasets-2.18.0 dill-0.3.8 multiprocess-0.70.16 xxhash-3.4.1\n" ] } ] }, { "cell_type": "code", "execution_count": 10, "metadata": { "id": "yH5nDblMIjoS", "colab": { "base_uri": "https://localhost:8080/" }, "outputId": "c650bc1d-bdd6-40c9-a586-7d9fd197207b" }, "outputs": [ { "output_type": "stream", "name": "stdout", "text": [ "Token will not been saved to git credential helper. Pass `add_to_git_credential=True` if you want to set the git credential as well.\n", "Token is valid (permission: write).\n", "Your token has been saved to /root/.cache/huggingface/token\n", "Login successful\n", "Downloaded all the issues for CoWeSe.txt! Dataset stored at dataset/spanish_medical_llms.jsonl\n", " On dataset there are as document 1973048\n", " On dataset there are as copy document 0\n", " On dataset there are as size of Tokens 1973048\n", "File size on Kilobytes (kB) 270594\n", "File size on Megabytes (MB) 264\n", "File size on Gigabytes (GB) 0\n", "Generating train split: 1973048 examples [00:05, 368953.10 examples/s]\n", "Downloading readme: 100% 8.04k/8.04k [00:00<00:00, 21.2MB/s]\n", "Downloading data: 100% 23.7M/23.7M [00:00<00:00, 52.0MB/s]\n", "Generating train split: 100% 33941/33941 [00:00<00:00, 94956.62 examples/s] \n", "Uploading the dataset shards: 0% 0/1 [00:00