# -*- coding: utf-8 -*- """using_dataset_hugginface.ipynb Automatically generated by Colaboratory. Original file is located at https://colab.research.google.com/drive/1soGxkZu4antYbYG23GioJ6zoSt_GhSNT """ """**Hugginface loggin for push on Hub**""" ### # # Used bibliografy: # https://huggingface.co/learn/nlp-course/chapter5/5 # ### import os import time import math from huggingface_hub import login from datasets import load_dataset, concatenate_datasets from functools import reduce from pathlib import Path import pandas as pd import numpy as np # Load model directly from transformers import AutoTokenizer HF_TOKEN = '' DATASET_TO_LOAD = 'spanish_health_output.json' DATASET_TO_UPDATE = 'somosnlp/spanish_medica_llm' BAD_CHAIN = [ 'es como usted puede verificarlo', 'Un sitio oficial del Gobierno de Estados Unidos', 'lo en sitios web oficiales y seguros.', 'forma segura a un sitio web .gov. Comparta informaci', 'Gobierno de Estados Unidos.', 'pertenece a una organizaci', '(\r\n \n ) o ', 'Un sitio\r\n' ] #Loggin to Huggin Face login(token = HF_TOKEN) royalListOfCode = {} issues_path = 'dataset' tokenizer = AutoTokenizer.from_pretrained("DeepESP/gpt2-spanish-medium") DATASET_SOURCE_ID = '2' #Read current path path = Path(__file__).parent.absolute() dataset_CODING = pd.read_json(str(path) + os.sep + DATASET_TO_LOAD, encoding="utf8") # raw_text: Texto asociado al documento, pregunta, caso clínico u otro tipo de información. # topic: (puede ser healthcare_treatment, healthcare_diagnosis, tema, respuesta a pregunta, o estar vacío p.ej en el texto abierto) # speciality: (especialidad médica a la que se relaciona el raw_text p.ej: cardiología, cirugía, otros) # raw_text_type: (puede ser caso clínico, open_text, question) # topic_type: (puede ser medical_topic, medical_diagnostic,answer,natural_medicine_topic, other, o vacio) # source: Identificador de la fuente asociada al documento que aparece en el README y descripción del dataset. # country: Identificador del país de procedencia de la fuente (p.ej.; ch, es) usando el estándar ISO 3166-1 alfa-2 (Códigos de país de dos letras.). cantemistDstDict = { 'raw_text': '', 'topic': '', 'speciallity': '', 'raw_text_type': 'open_text', 'topic_type': 'other', 'source': DATASET_SOURCE_ID, 'country': 'es', 'document_id': '' } def getExtraTexInformation(item, data_top_columname): optionalTag = ["Healthtopics Name", "titles", "subtitles", "paragraphs"] text = "" for key in data_top_columname: if key not in optionalTag: if not np.isnan(item[key]) and len(item[key]) > 1: text += str(item[key]) + '\n' return text totalOfTokens = 0 corpusToLoad = [] countCopySeveralDocument = 0 counteOriginalDocument = 0 data_top_columname = dataset_CODING.head() def verifyRepetelyChain(paragraph): return '' if len([ x for x in BAD_CHAIN if paragraph.find(x) != -1]) > 0 else paragraph for index, item in dataset_CODING.iterrows(): if len(item['paragraphs']) > 1: text = reduce(lambda a, b: verifyRepetelyChain(a) + "\n "+ verifyRepetelyChain(b), item['paragraphs'], "") else: text = getExtraTexInformation(item, data_top_columname) #Find topic or diagnosti clasification about the text counteOriginalDocument += 1 newCorpusRow = cantemistDstDict.copy() #print('Current text has ', currentSizeOfTokens) #print('Total of tokens is ', totalOfTokens) listOfTokens = [] try: listOfTokens = tokenizer.tokenize(text) except Exception: raise Exception('Error') currentSizeOfTokens = len(listOfTokens) totalOfTokens += currentSizeOfTokens newCorpusRow['topic'] = item['Healthtopics Name'] if item['Healthtopics Name'] else reduce(lambda a, b: a + "\n "+ b, item['titles'], "") newCorpusRow['raw_text'] = text idFile = counteOriginalDocument newCorpusRow['document_id'] = str(idFile) corpusToLoad.append(newCorpusRow) df = pd.DataFrame.from_records(corpusToLoad) if os.path.exists(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl"): os.remove(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl") df.to_json(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl", orient="records", lines=True) print( f"Downloaded all the issues for {DATASET_TO_LOAD}! Dataset stored at {issues_path}/spanish_medical_llms.jsonl" ) print(' On dataset there are as document ', counteOriginalDocument) print(' On dataset there are as copy document ', countCopySeveralDocument) print(' On dataset there are as size of Tokens ', totalOfTokens) file = Path(f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl") # or Path('./doc.txt') size = file.stat().st_size print ('File size on Kilobytes (kB)', size >> 10) # 5242880 kilobytes (kB) print ('File size on Megabytes (MB)', size >> 20 ) # 5120 megabytes (MB) print ('File size on Gigabytes (GB)', size >> 30 ) # 5 gigabytes (GB) #Once the issues are downloaded we can load them locally using our local_spanish_dataset = load_dataset("json", data_files=f"{str(path)}/{issues_path}/spanish_medical_llms.jsonl", split="train") ##Update local dataset with cloud dataset try: spanish_dataset = load_dataset(DATASET_TO_UPDATE, split="train") new_spanish_dataset = concatenate_datasets([spanish_dataset, local_spanish_dataset]) except Exception: print ('<== Exception ==> ') raise Exception #new_spanish_dataset = local_spanish_dataset new_spanish_dataset.push_to_hub(DATASET_TO_UPDATE) print(new_spanish_dataset) # Augmenting the dataset #Importan if exist element on DATASET_TO_UPDATE we must to update element # in list, and review if the are repeted elements #spanish_dataset.push_to_hub(DATASET_TO_UPDATE)