Phantom Hourglass is a continuation of the story from The Wind Waker, and is followed by Spirit Tracks, which is set about 100 years later on a supercontinent far away from the setting of The Wind Waker.
Hra Phantom Hourglass je pokračovaním príbehu z The Wind Wakera, a potom nasleduje Spirit Tracks, ktorý sa odohráva asi o 100 rokov neskôr na velľkom kontinente ďaleko od dejiska The Wind Wakera.