semvec/pypi-packages huggingface dataset:
lapels 1.1.1
Lapels - A remapper and annotator of in silico (pseudo) genome alignments
License: The MIT License
Keywords: lapels remap position bam mod

Lapels remaps reads aligned to the in silico genome back to the reference
coordinate and annotates variants.

Two files are taken as input:
    (1) a MOD file that is used to generate the in silico genome and
    (2) a BAM file that contains the in silico genome alignments.

Lapels will generate a new BAM file with corrected read positions, adjusted
cigar strings, and annotated tags of variants (eg. SNPs, Insertions, and
Deletions).