semvec/pypi-packages huggingface dataset:
genome-update 0.1.6.8
A script for updating a local directory with genomes, from NCBI assembly files
License: MIT

# genome_update

genome_update is a package that downloads genomes from NCBI and saves information about them in a yaml file.
It can also use a local yaml file to update and download new genomes.

Sequence statistics is also calculated for each genome and added to the yaml file.

## Getting Started

These instructions will provide information how to install and use the software.

### Prerequisites

Python
Pandas
PyYaml


### How to install

To install Genome_update you can either download source code directly from github and build it your self, an easier alternative is to use pip.

Installing by pip:

```
pip install genome_update
```
Pip will also install all prerequisities. It is also recommended to update all prerequisities.

Installing genome_update and upgrading prerequisities: 

```
pip install genome_update --upgrade
```

### Usage

Download all genomes from a specific genus:
```
genome_update -g <Genus>
```

Download all genomes from a specific genus, but much faster:
```
genome_update -g <Genus> -p <threads>
```

Download all genomes from a specific genus, but much faster, to a specific directory (default is /genomes):
```
genome_update -g <Genus> -p <threads> -o <directory>
```

Download all genomes from a specific species:
```
genome_update -g <Genus> -s <species_taxid>
```

To update a local yaml file:
```
genome_update -u -i <yamlfile>
```

To download missing genomes from a local yaml file:
```
genome_update -d -i <yamlfile>
```

To download genomes from another domain than bacteria:
```
genome_update -domain <domain> -g <Genus> 
```



## Authors

* **Emil Samuelsson** - *Initial work* - [Emisam](https://github.com/Emisam)


## License

This project is licensed under the MIT License - see the [LICENSE](LICENSE) file for details

## Acknowledgments

* Would like to thank kblin for his amazing work with the ncbi_genome_download which provided lots of inspiration when writing genome_update.
django-poeditor-com-field 0.2.4
Translate your model data with poeditor.com.
License: MIT
Keywords: django-poeditor-com-field

=============================
Django poeditor.com Model Field
=============================

.. image:: https://badge.fury.io/py/django-poeditor-com-field.svg
    :target: https://badge.fury.io/py/django-poeditor-com-field

.. image:: https://travis-ci.org/runekaagaard/django-poeditor-com-field.svg?branch=master
    :target: https://travis-ci.org/runekaagaard/django-poeditor-com-field

.. image:: https://codecov.io/gh/runekaagaard/django-poeditor-com-field/branch/master/graph/badge.svg
    :target: https://codecov.io/gh/runekaagaard/django-poeditor-com-field

Translate your model data with poeditor.com.

Documentation
-------------

The full documentation is at https://django-poeditor-com-field.readthedocs.io.

Quickstart
----------

Install Django poeditor.com Model Field::

    pip install django-poeditor-com-field

Add it to your `INSTALLED_APPS`:

.. code-block:: python

    INSTALLED_APPS = (
        ...
        'poeditor_com_field.apps.PoeditorComFieldConfig',
        ...
    )

Add Django poeditor.com Model Field's URL patterns:

.. code-block:: python

    from poeditor_com_field import urls as poeditor_com_field_urls


    urlpatterns = [
        ...
        url(r'^', include(poeditor_com_field_urls)),
        ...
    ]

Features
--------

* TODO

Running Tests
-------------

Does the code actually work?

::

    source <YOURVIRTUALENV>/bin/activate
    (myenv) $ pip install tox
    (myenv) $ tox

Credits
-------

Tools used in rendering this package:

*  Cookiecutter_
*  `cookiecutter-djangopackage`_

.. _Cookiecutter: https://github.com/audreyr/cookiecutter
.. _`cookiecutter-djangopackage`: https://github.com/pydanny/cookiecutter-djangopackage




History
-------

0.1.0 (2017-02-07)
++++++++++++++++++

* First release on PyPI.
beancount-fava 1.2.1
A rich web interface for the CL-accounting tool beancount.
License: MIT
Keywords: fava beancount beancount-fava beancount-webledger ledger-cli cl-accounting

.. image:: https://badges.gitter.im/beancount/fava.svg
   :alt: Join the chat at https://gitter.im/beancount/fava
   :target: https://gitter.im/beancount/fava
.. image:: https://img.shields.io/pypi/l/beancount-fava.svg
   :target: https://pypi.python.org/pypi/beancount-fava
.. image:: https://img.shields.io/pypi/v/beancount-fava.svg
   :target: https://pypi.python.org/pypi/beancount-fava
.. image:: https://img.shields.io/travis/beancount/fava.svg
   :target: https://travis-ci.org/beancount/fava?branch=master

**This package has been renamed to `fava <https://pypi.python.org/pypi/fava>`__.
Please use the `fava <https://pypi.python.org/pypi/fava>`__ package in the
future!**

Fava is a web interface for the double-entry bookkeeping software `beancount
<http://furius.ca/beancount/>`__ with a focus on features and usability.

Check out the online `demo <http://fava.pythonanywhere.com>`__ and learn more
about Fava on the `Web Site <https://beancount.github.io/fava/>`__.

The `Getting Started
<https://beancount.github.io/fava/usage.html>`__ guide details the installation
and how to get started with beancount.  If you are already familiar with
beancount, you can get started with Fava::

    pip3 install fava
    fava ledger.beancount

and visit the web interface at `http://localhost:5000
<http://localhost:5000>`__.

If you want to hack on Fava or run a development version, see the
`Development <https://beancount.github.io/fava/development.html>`__ page on the
website for details. Contributions are very welcome!

.. image:: https://raw.githubusercontent.com/beancount/fava/master/docs/static/screenshot.png
    :alt: Fava Screenshot
    :width: 100%
    :align: center
    :target: http://fava.pythonanywhere.com
django-admin-gitlog 0.2
Display a `git log` in your admin
License: MIT

django-admin-gitlog
===================

*Display a `git log` in your admin*

To install, :code:`pip3 install django-admin-gitlog`

And then add it to your :code:`INSTALLED_APPS`

.. code:: python

    INSTALLED_APPS = [
        # ...
        'admin_gitlog',
    ]


How it works: It simply overrides the default `admin.index_template` to add the info


.. image:: https://raw.githubusercontent.com/mdamien/django-admin-gitlog/master/screenshot.png
    :target: https://github.com/mdamien/django-admin-gitlog/master/screenshot.png
    :alt: Screenshot
mattermost_log_handler 0.0.2
Posts log events to Mattermost via webhook
License: MIT
Keywords: mattermost

**********************
Mattermost Log Handler
**********************

Python log Handler that posts to a Mattermost channel. Post to
Mattermost using `Incoming
Webhooks <https://docs.mattermost.com/developer/webhooks-incoming.html>`__.
Inspired by https://github.com/mathiasose/slacker\_log\_handler and
others slack logs

Mattermost Log Handler use asyncio to generate requests non-blocking.

*exc\_info* is sent as a attachments

Mattermost don't support *icon\_emoji* as slack, maybe change icon\_url
to icon with differents levels of warnings, using /static/emoji as url