semvec/pypi-packages huggingface dataset:
superabc 1.1.0
A Python sampling method for obtaining cosmological constraints from SN light curves using Approximate Bayesian Computation.
License: MIT

Approximate Bayesian computation (ABC) and so
called "likelihood free" Markov chain Monte Carlo
techniques are popular methods for tackling parameter
inference in scenarios where the likelihood is intractable or unknown.
These methods are called likelihood free as they are free from
the usual assumptions about the form of the likelihood e.g. Gaussian,
as ABC aims to simulate samples from the parameter posterior distribution directly.
``superABC`` is a python package that implements  the astroABC sampler using either the SNANA or the sncosmo Supernovae simulation
packages and simulates samples from the posterior distribution using two distinct distance metrics.
``superABC`` requires ``NumPy``,``SciPy`` and ``astroabc``. The SNANA and rootpy packages are required if using this as a forward model simulation.
sncosmo, astropy and pandas are required if using sncosmo as the forward model simulation.
pyfootball 1.0.1
A client library for the football-data.org REST API
License: MIT
Keywords: api wrapper client library football data

pyfootball
============
.. image:: https://readthedocs.org/projects/pyfootball/badge/?version=latest
    :target: http://pyfootball.readthedocs.io/en/latest/?badge=latest
    :alt: Documentation Status

.. image:: https://travis-ci.org/xozzo/pyfootball.svg?branch=develop
    :target: https://travis-ci.org/xozzo/pyfootball
    :alt: Travis CI Status

pyfootball is a client library for `football-data.org <http://api.football-data.org/index>`_ written in Python.

You can familiarize yourself with pyfootball's API with the `documentation <https://pyfootball.readthedocs.io>`_.

Requirements
---------------

* A valid API key for football-data. You can request for one at `<http://api.football-data.org/register>`_.
* Python 3.5+
* The ``requests`` library. pip should handle this for you when installing pyfootball.

Installation
---------------
::

    pip install pyfootball

Example Usage
------------------
::

    >>> import pyfootball
    >>> f = pyfootball.Football(api_key='your_api_key')
    >>> bayern = f.get_team(5)
    >>> bayern.market_value
    582,225,000 €

Support
----------
If you encounter any bugs, please let me know by `creating an issue <https://github.com/xozzo/pyfootball/issues/new>`_ or tweeting at me `@timorthi <https://www.twitter.com/timorthi>`_.  

Contributing
---------------
Please see the repository's `CONTRIBUTING` file.

License
----------
The project is licensed under the MIT license.
snoopy 0.4.7
Browser based quality control tool to expedite reviewing predicted variants in next generation sequencing files.
License: MIT
Keywords: quality control qc variants next generation sequencing bam cram

######
Snoopy
######

Browser based quality control tool to expedite reviewing predicted variants in next generation sequencing files.

************
Requirements
************

Snoopy has been tested on

* Mac OS X
* Ubuntu

And requires

* python (2 or 3)
* a modern web browser

If your files reside on a server without HTTP/S access snoopy can access this but will require `samtools <http://www.htslib.org/>`_  to be installed and in your path.

************
Installation
************

::

    pip install snoopy


*******
Authors
*******

* Daniel Rice (dr9@sanger.ac.uk)
* Jeff Barrett


*************
Documentation
*************

All documentation is at `Read the Docs <http://snoopy.readthedocs.io/>`_.



FAQs
====

On Ubuntu, Failed building wheel for cryptography
-------------------------------------------------

Snoopy requires the python package paramiko which in turn requires cryptography. According to `this stackoverflow question <http://stackoverflow.com/questions/22073516/failed-to-install-python-cryptography-package-with-pip-and-setup-py>`_ in order to install cryptography on Debian and Ubuntu you must first::

    sudo apt-get install build-essential libssl-dev libffi-dev python-dev

and on Fedora and RHEL-derivatives::

    sudo yum install gcc libffi-devel python-devel openssl-devel


On Ubuntu, npm start fails with Error: watch ENOSPC
---------------------------------------------------

According to https://discourse.roots.io/t/gulp-watch-error-on-ubuntu-14-04-solved/3453 this is caused by a limit for how many files can be watched by a user and can be updated with::

    echo fs.inotify.max_user_watches=582222 | sudo tee -a /etc/sysctl.conf && sudo sysctl -p




***********
Development
***********

To install snoopy for development purposes, if you don't have this already install `Node Version Manager <https://github.com/creationix/nvm>`_ and use it to install v4.4.5 of Node::

    $ nvm install v.4.4.5
    $ nvm use v4.4.5

Clone the repository::

    $ git clone --recursive https://github.com/wtsi-medical-genomics/snoopy.git

Build dalliance::

    $ cd snoopy/snoopy/dalliance
    $ npm install -g gulp
    $ npm install
    $ gulp

Build snoopy::

    $ cd .. # now in snoopy/snoopy/
    $ npm install
    $ npm start


*******
License
*******

Copyright (c) 2016 Genome Research Ltd.

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.

This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.

You should have received a copy of the GNU General Public License along with this program. If not, see http://www.gnu.org/licenses/.