semvec/pypi-packages huggingface dataset:
gurka_toolkits 0.1
Contains a set of helper kits that can help you for development.
License: MIT

Gurka Toolkits
--------------

To use (with caution), simply do::

    >>> from gurka import toolkits
    >>>
    >>> # Example rupiah formating
    >>> money_idn = 45000
    >>> toolkits.to_rupiah(money_idn)
    'Rp. 45,000.00'
    >>>
    >>> # Example using autonumber
    >>> toolkits.DEFAULT_PREFIX = "PRD" # PRD is a prefix code for product. 
    >>> toolkits.DEFAULT_OVERFLOW = 3 # Total digit autonumber
    >>> 
    >>> toolkits.autonumber()
    'PRD001'
    >>>
    >>> toolkits.autonumber(data=_)
    'PRD002'
    >>> toolkits.autonumber(data=_)
    'PRD003'
    >>> toolkits.autonumber(data=_)
    'PRD004'
dotcli 0.1.7
A git inspired CLI to manage your dotfiles
License: MIT
Keywords: cli git github dot dotfiles sync symlink command line

dot *Beta*
================

A git inspired CLI to manage your dotfiles

Please ★ this repo if you found it useful ★ ★ ★


Features
--------

-  Sync with git
-  Automatic symlinking


Installation
------------

.. code:: sh

       sudo pip install dot
       dot clone


Usage
------------

Run the following every time you make changes

.. code:: sh

       dot sync


Dependencies
------------

-  `Python`_


Support
-------

Submit an `issue`_


Buy Me Coffee
-------------

A ridiculous amount of coffee was consumed in the process of building
this project.

`Add some fuel`_ if you’d like to keep me going!


Contributing
------------

1. Fork it!
2. Create your feature branch: ``git checkout -b my-new-feature``
3. Commit your changes: ``git commit -m 'Add some feature'``
4. Push to the branch: ``git push origin my-new-feature``
5. Submit a pull request :D


License
-------

`MIT License`_

`Jam Risser`_ © 2017


Credits
-------

-  `Jam Risser`_ - Author


Changelog
---------

0.1.0 (2017-08-20) \* Beta release

0.0.1 (2017-08-17) \* Alpha release

.. _Python: https://www.python.org/
.. _issue: https://github.com/jamrizzi/dot/issues/new
.. _Add some fuel: https://pay.jamrizzi.com
.. _MIT License: https://github.com/jamrizzi/dot/blob/master/LICENSE
.. _Jam Risser: https://jamrizzi.com
bio-pm 0.1.1
A point mutation analyzing tool for nucleotide sequence
License: MIT
Keywords: nucleotide mutation analyzing

bio-pm
======

.. image:: https://img.shields.io/pypi/v/bio-pm.svg
    :target: https://pypi.python.org/pypi/bio-pm
    :alt: Latest PyPI version

.. image:: https://travis-ci.org/ekeyme/bio-pm.png
   :target: https://travis-ci.org/ekeyme/bio-pm
   :alt: Latest Travis CI build status

A point mutation analyzing tool for nucleotide sequence

Installation
------------

Install through pip::

    pip install bio-pm

Or manually (assuming all required modules are installed on your system)::

    python ./setup.py install


Requirements
^^^^^^^^^^^^

* Python >= 2.7
* biopython

Examples
--------

Analyze point mutation status using ``pm.analyze(seq, stdseq, translate=True)``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

.. code-block:: python

    >>> import pm
    >>>
    >>> stdseq = 'ATGGGCGC'
    >>> seq_with_gap = 'ATGGGCG-C'
    >>> pm.analyze(seq_with_gap, stdseq)
    <pm.status.NA object with: gaps=1, nt_pm=1, aa_pm=0, stdseq='ATGGGCGC'>
    >>> 

Quickly compare between ``pm.status`` objects
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

``p.status`` objects with same stdseqs have their internal order. That is ``Y > Conserved >
PM > NA``.

.. code-block:: python

    >>> import pm
    >>>
    >>> stdseq = "ATGGGCGCT"
    >>> seq_without_pm = 'ATGGGCGCT'
    >>> seq_conserved = "ATGGGCGCC"
    >>> seq_with_pm = 'ATGGGCGAT'
    >>> status_Y = pm.analyze(seq_without_pm, stdseq)
    >>> status_Conserved = pm.analyze(seq_conserved, stdseq)
    >>> status_PM = pm.analyze(seq_with_pm, stdseq)
    >>>
    >>> status_Y > status_Conserved > status_PM
    True
    >>>

Help generate HGVS-like mutation format
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^

*Codes continues from* ``Quickly compare the point mutation status objects``

.. code-block:: python

    >>> from pm.pattern import mutant_to_str
    >>>
    >>> status_PM.pattern
    <pm.pattern.TranslatedPattern object at 0x2b03c9cfdc18>
    >>>
    >>> for nt_pm, aa_pm in status_PM.pattern.list():
    ...     print(mutant_to_str(*nt_pm) + '|' + mutant_to_str(*aa_pm))
    ...
    8C>A|3A>D

Licence
-------

MIT licensed. See the bundled `LICENSE <https://github.com/ekeyme/bio-pm/blob/master/LICENSE>`_ file for more details.

Authors
-------

`bio-pm` was written by `Ekeyme Mo <ekeyme@gmail.com>`_.