semvec/pypi-packages huggingface dataset:
pagr 0.1.9
A Python Aggregator

# pagr - the Python Aggregator
**THIS IS NOT INTENDED FOR ANY USE**

## Development

### Upload to pip
1. Make sure that the version number has been updated
1. Generate dist files `python setup.py sdist bdist_wheel`
2. Upload to PyPI `twine upload dist/*`

## Docker
1. `docker build -t pagr-test:latest .`
1. `docker run pagr-test:latest`
incenp.binseqs 0.2.1
Support for binary sequence formats in Biopython

BinSeqs - Support for binary sequence formats in Bioython
=========================================================

BinSeqs is a Python package intended to enrich the SeqIO
framework from [Biopython](https://biopython.org/) by adding
support for some binary sequence formats.


Deprecation Warning
-------------------

This code has now been merged into Biopython. Starting from
Biopython release 1.75, all you need to do to support the formats
below is to load the `Bio.SeqIO` module.

Consequently, this project will no longer be maintained. It will
remain available online but will not be updated. All improvements
and bug fixes will occur in the Biopython repository.

You can still use this module until Biopython 1.75 is released and
available on your system. After that, loading the `incenp.bio.seqio`
module will be a no-op and a DeprecationWarning will be emitted.


Formats supported
-----------------

* `xdna` format, used by _DNA Strider_ and
  [Serial Cloner](http://serialbasics.free.fr/Serial_Cloner.html):
  reading and writing supported
* `snapgene` format, used by [SnapGene](https://www.snapgene.com/):
  reading support only
* `gck` format, used by [Gene Construction Kit](http://www.textco.com/gene-construction-kit.php):
  reading support only


Usage
-----
The BinSeqs parsers and writers are not designed to be used
independently and should instead be used through the Biopython's
SeqIO module.

Simply import the `incenp.bio.seqio` module to make the parsers
and writers available to Biopython's SeqIO:

    from Bio import SeqIO
    import incenp.bio.seqio

    records = list(SeqIO.parse('snapgene_file.dna', 'snapgene'))
    SeqIO.write(records, 'serialcloner_file.xdna', 'xdna')


Copying
-------
BinSeqs is free software and distributed under the terms of
a BSD-like license. The full license is included in the
[LICENSE.txt file](LICENSE.txt) of the source distribution.


Homepage
--------
The project is located at https://incenp.org/dvlpt/binseqs.html
(homepage) and https://git.incenp.org/damien/binseqs (repository
and bug tracker).