semvec/pypi-packages huggingface dataset:
refchooser 0.2.1
Tools to help choosing a reference assembly.
License: BSD
Keywords: bioinformatics

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refchooser
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        :target: https://pypi.python.org/pypi/refchooser

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Tools to help choose a reference from a list of assemblies.

The refchooser project was developed by the United States Food
and Drug Administration, Center for Food Safety and Applied Nutrition.

* Free software
* Documentation: https://refchooser.readthedocs.io
* Source Code: https://github.com/CFSAN-Biostatistics/refchooser
* PyPI Distribution: https://pypi.python.org/pypi/refchooser


Features
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* Print a table of metrics to help choose an assembly from a collection.
* N50
* N90
* Number of contigs
* Assembly length
* Mean mash distance to all other assemblies


Citing refchooser
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To cite refchooser, please reference the refchooser GitHub repository:

    https://github.com/CFSAN-Biostatistics/refchooser


License
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See the LICENSE file included in the refchooser distribution.




History
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0.2.1 (2019-08-20)
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* Detect and exclude empty assemblies.


0.2.0 (2019-07-12)
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* Add N50 and N90 metrics.
* Calculate a simple "Score" for each assembly, the N50/Distance ratio.
* Combine all metrics in a single table sortable by any column.


0.1.0 (2019-06-21)
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* Initial version.