semvec/pypi-packages huggingface dataset:
w13scan 0.9.17
Passive Web Security Scanner
Requires Python: >=3.4
Keywords: scanner,w13scan

<h1 align="center">W13Scan</h1>

> W13scan is a proxy-based web scanner that runs on Linux/Windows/Mac systems.

[![GitHub issues](https://img.shields.io/github/issues/boy-hack/w13scan)](https://github.com/boy-hack/w13scan/issues) [![GitHub forks](https://img.shields.io/github/forks/boy-hack/w13scan)](https://github.com/boy-hack/w13scan/network) [![GitHub stars](https://img.shields.io/github/stars/boy-hack/w13scan)](https://github.com/boy-hack/w13scan/stargazers) [![GitHub license](https://img.shields.io/github/license/boy-hack/w13scan)](https://github.com/boy-hack/w13scan/blob/master/LICENSE)

[简体中文](./README_CN.md) | English

## 声明
仅用于教育行为使用，其他用途后果自负

## Begin
Demo https://youtu.be/WwIc2kDlKbc

Pure Python and Python version >= 3

Can you use star to encourage the author ？

## �� Install

```bash
$ sudo pip3 install w13scan

## update
$ sudo pip3 install -U w13scan
```
or
```bash
$ wget https://github.com/boy-hack/w13scan/archive/master.zip
$ unzip master.zip
$ cd master/W13SCAN
$ pip3 install -r ../requirement.txt
$ python3 cli.py -h
```

## �� Usage

```bash
## help
$ w13scan -h

## running
$ w13scan -s 127.0.0.1:7778
```

### HTTPS Support

If you want w13scan to support https, similar to BurpSuite, first need to set up a proxy server (default 127.0.0.1:7778), then go to http://w13scan.ca to download the root certificate and trust it.

## ⌨ Development

```python
from W13SCAN.api import Scanner

scanner = Scanner(threads=20)
scanner.put("http://example.com/?post=1")
scanner.run()

```

By introducing the w13scan package, you can quickly create a scanner.

## Contributors
- [CONTRIBUTORS](CONTRIBUTORS.md)
SpliceV 0.1.6.11b0
Visualize splice junctions, backsplice junctions (circleRNA) and coverage from RNA-Seq datasets
Requires Python: >=2.7,>=3

# SpliceV #
Visualize coverage, canonical, and backsplice junctions.

![Example plot](https://github.com/flemingtonlab/SpliceV/blob/master/etc/example.png)

## Documentation ##
See https://splicev.readthedocs.io/en/master/

## Example pipeline ##
See https://github.com/flemingtonlab/SpliceV/blob/master/docs/example.pdf

This will generate figure 1B and 1C from our manuscript (DOI pending)

## Requirements ##
SpliceV works with Python 2.7 and 3.0+.
## Dependencies ##
* Matplotlib
* Numpy
* pysam
## Installation ##
To install SpliceV:

```
pip install SpliceV
```

Or:

```
git clone https://github.com/flemingtonlab/SpliceV.git
```

## Example ##
To run the example dataset:

```
git clone https://github.com/flemingtonlab/SpliceV.git 

cd SpliceV/example 

python ../bin/SpliceV -b example.vta1.bam -gtf vta1.gtf -sj example.canonical.bed -bsj example.circles.bed -g VTA1 -f 3 -is 3

```

The sample data comes from Akata cells (a B Cell Lymphoma line) that were treated with the exonuclease RNase R prior to sequencing. RNase R exclusively digests RNA with a free end, helping enrich circularized RNA abundance in the sample. 

These example commands will generate the following plot:
![User example plot](https://github.com/flemingtonlab/SpliceV/blob/master/etc/vta1.png)

This plot reveals a prominant circle from exon 2 through exon 4 (evidenced by the back-splice junction reads which are plotted as curves below the axis. This is also demonstrated by the higher level of coverage in exon 2-4, shown by the relative intensity of color).

![User example plot explained](https://github.com/flemingtonlab/SpliceV/blob/master/etc/vta1_explained.png)

The major circularized isoform (exons 2-4; another less prevalent circle appears to include exon 5) is isolated below:


![User example circle](https://github.com/flemingtonlab/SpliceV/blob/master/etc/vta1_circ.png)

## Authors ##
Created by Nathan Ungerleider and Erik Flemington