semvec/pypi-packages huggingface dataset:
prapi 6.2.0
Transcriptome Analysis Pipeline for Isoform Sequencing
License: MIT

=============
Prapi Summary
=============
More Detail information is on http://www.bioinfor.org/tool/PRAPI/.

PRAPI is a one-stop solution for Iso-Seq analysis of analyze alternative transcription initiation (ATI), alternative splicing (AS), alternative cleavage and polyadenylation (APA), natural antisense transcripts (NAT), and circular RNAs (circRNAs) comprehensively. 

============
Update
============
| 2019.9.6
|         Fix APA support number Bugs.

============
Installation
============

| Basic prapi installation (python 2.7 support)


| Before install,Please install these base.
| $conda install -y -c bioconda bx-python
| $conda install -y -c bioconda pycairo
| $conda install -c bioconda pysam
| $conda install -c bioconda gmap
| $conda install -c biocodna samtools==0.1.19
| $conda install -c bioconda  gmap==2016.09.23
| $conda install -c bioconda cufflinks==2.2.1
| $conda install -c bioconda bioconductor-edger
| $conda install -c bioconda bioconductor-degseq
| $pip install scipy
| $pip install fisher
| $pip install CIRCexplorer
| $wget http://www.bioinfor.org/tool/PRAPI/download/SpliceGrapher-0.2.5.tar.gz
| $tar -xzvf SpliceGrapher-0.2.5.tar.gz
| $cd SpliceGrapher-0.2.5
| $python setup.py install
| #After this,Please install prapi
| $pip install prapi
| ####################################
| #test file 
| wget http://www.bioinfor.org/tool/PRAPI/download/v2/test_v2.tar.gz
| tar -xvzf test_v2.tar.gz
| cd test_v2
| sh run.sh
| ####################################
| See more complete tutorials on the `documentation page <http://www.bioinfor.org/tool/PRAPI/manual.php>`_.

===
RNA
===


=====================
Further Documentation
=====================

========
Citation
========

Gao Y, Wang H, Zhang H, Wang Y, Chen J, Gu L, (2017), PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq.Bioinformatics,Bioinformatics, btx830,https://doi.org/10.1093/bioinformatics/btx830