semvec/pypi-packages huggingface dataset:
BSBolt 1.3.6
Bisulfite Sequencing Processing Platform
License: MIT
Requires Python: >=3.6

# **BSBolt (BiSulfite Bolt)**
## A fast and safe bisulfite sequencing processing platform

[BiSuflite Bolt (BSBolt)](https://github.com/NuttyLogic/BSBolt); a fast and scalable bisulfite sequencing 
processing platform. BSBolt is an integrated analysis platform that offers support for bisulfite sequencing 
read simulation, alignment, methylation calling, data aggregation, and data imputation. BSBolt has been validated 
to work with a wide array of bisulfite sequencing data,including whole genome bisulfite sequencing (WGBS), 
reduced representative bisulfite sequencing data (RRBS), and targeted methylation sequencing data. 
BSBolt utilizes forked versions of [BWA](https://github.com/lh3/bwa) 
and [WGSIM](https://github.com/lh3/wgsim) for read alignment and read simulation respectively. 
BSBolt is released under the MIT license.
 
## Documentation

BSBolt documentation can be found at [bsbolt.readthedocs.io](https://bsbolt.readthedocs.io).

## Installation

### **PyPi Installation**

The easiest installation method is installing pre-compiled binaries using PyPi. Binaries are provided for python >=3.6
on unix like systems (macOS >=10.15 and linux).

```shell
pip3 install BSBolt --user
```

### **Installing from Source**

Dependencies

* zlib-devel >= 1.2.3-29
* GCC >= 8.3.1

```shell
# clone the repository
git clone https://github.com/NuttyLogic/BSBolt.git
cd BSBolt
# compile and install package
pip3 install .
```

### **Installing from Source on macOS**

Dependencies 
* autoconf
* homebrew
* xcode

Installation from source requires xcode command line utilities, [homebrew](https://brew.sh/) macOS package manager, 
and autoconf are installed. Xcode through the mac App Store, running the xcode installation command listed below, 
or as part of the [homebrew](https://brew.sh/) macOS package manager installation. The full installation process
can be completed as outlined below.

```shell script
# install xcode utilities
xcode-select --install
# install homebrew
/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/master/install.sh)"
# install autoconf
brew install autoconf
# optionally install python
brew install python3.8
# install BSBolt
pip3 install BSBolt
```
quill-delta 1.0.3
Python port of the quill.js delta library that enables operational transformation with aditional functionality for rendering html
License: MIT
Requires Python: >=3.6,<4.0


# Delta (Python Port)

Python port of the javascript Delta library for QuillJS: https://github.com/quilljs/delta

Some basic pythonizing has been done, but mostly it works exactly like the above library.

There is no other python specific documentation at this time, sorry.  Please see the tests
for reference examples.

## Install with [Poetry](https://poetry.eustace.io/docs/#installation)

With HTML rendering:

    > poetry add -E html quill-delta

Without HTML rendering:

    > poetry add quill-delta

## Install with pip

Note: If you're using `zsh`, see below.

With HTML rendering:

    > pip install quill-delta[html]

With HTML rendering (zsh):

    > pip install quill-delta"[html]"

Without HTML rendering:

    > pip install quill-delta


# Rendering HTML in Python

This library includes a module `delta.html` that renders html from an operation list,
allowing you to render Quill Delta operations in full from a Python server.

For example:

    from delta import html

    ops = [ 
        { "insert":"Quill\nEditor\n\n" },
        { "insert": "bold",
          "attributes": {"bold": True}},
        { "insert":" and the " },
        { "insert":"italic",
          "attributes": { "italic": True }},
        { "insert":"\n\nNormal\n" },
    ]

    html.render(ops)

Result (line formatting added for readability):
    
    <p>Quill</p>
    <p>Editor</p>
    <p><br></p>
    <p><strong>bold</strong> and the <em>italic</em></p>
    <p><br></p>
    <p>Normal</p>

[See test_html.py](tests/test_html.py) for more examples.


# Developing

## Setup
If you'd to contribute to quill-delta-python, get started setting your development environment by running:

Checkout the repository

    > git clone https://github.com/forgeworks/quill-delta-python.git

Make sure you have python 3 installed, e.g.,

    > python --version

From inside your new quill-delta-python directory:

    > python3 -m venv env
    > source env/bin/activate
    > pip install poetry
    > poetry install -E html

## Tests
To run tests do:

    > py.test
getadvice 0.1.6
This is a fancy `Hello World` to publishing Python library to PyPi.
License: MIT
Requires Python: >=3.0,<4.0

==========
Get Advice
==========


Introduction
============

This is a fancy `Hello World` to publishing Python library to PyPi.



Usage
=====

.. code-block:: python

   import getadvice as gadv
   gadv.advice(<insert_name>)



Description
===========

1. Input to advice() is a text string
2. Retrieve advice via REST-API



References
==========

* https://www.pythoncheatsheet.org/blog/python-projects-with-poetry-and-vscode-part-1/
* https://python-poetry.org/docs/repositories/#adding-a-repository