semvec/pypi-packages huggingface dataset:
VirtualMicrobes 0.2.5
Virtual Microbe Evolutionary Simulator

README
------

Virtual Microbes Evolutionary Simulator 

Features
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* Individual based model of evolving microbes.
* Explicit model of evolving genome.
* Spatially extended environment.
* Microbes evolve metabolic capacities to exploit environmental nutrients.

Dependencies and scripts
------------------------


- depends on:
    - `cython <http://cython.org>`_
    - `matplotlib <http://matplotlib.org>`_
    - `networkx <http://networkx.github.io/>`_ (network analysis and drawing)
    - `ete3 <http://etetoolkit.org/>`_ (tree drawing and phylogenetics)
    - others see requirements.txt


Install
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``pip install VirtualMicrobes``

Usage
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can't wait to simulate:

    ``vermicelli.py evo <simulation_dir>``
    
open pandora's box of options:

- ``vermicelli.py --help``
- ``vermicelli.py evo --help``

Documentation
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http://virtualmicrobes.readthedocs.io/en/latest/ (in progress..)
CHANGELOG
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nothing changed here