semvec/pypi-packages huggingface dataset:
fastatools 1.2.0
Tools for working with fasta files.
License: BSD
Keywords: bioinformatics

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fastatools
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Tools for working with fasta files.

The fastatools package was developed by the United States Food
and Drug Administration, Center for Food Safety and Applied Nutrition.

* Free software
* Documentation: https://fastatools.readthedocs.io
* Source Code: https://github.com/CFSAN-Biostatistics/fastatools
* PyPI Distribution: https://pypi.python.org/pypi/fastatools


Features
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* Print the lengths of sequences.
* Determine if two fasta files are equivalent.
* Fix inconsistent line lengths and inconsistent lowercase.
* Generate a reverse complement of a fasta file.
* Extract a slice from a fasta file delimited by primers.
* Extract a range of positions from a fasta file.



Citing fastatools
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To cite fastatools, please reference the fastatools GitHub repository:

    https://github.com/CFSAN-Biostatistics/fastatools


License
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See the LICENSE file included in the fastatools distribution.





History
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1.2.0 (2018-12-10)
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* First public release with docs and automated tests.

1.1.0 (2018-10-25)
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* Add range command to extract a range of positions from a fasta file.
* Add equiv command to check for equivalent fasta files.
* Add rewrite command to fix line length and uppercase/lowercase inconsistencies.

1.0.0 (2018-09-21)
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* Add length command to print the length of all the sequences in fasta files.


0.1.0 (2017-11-30)
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* Project started.