semvec/pypi-packages huggingface dataset:
gwidecodeml 1.0
Testing positive selection in a genome-wide framework
Requires Python: >=3.

# **GWideCodeML:** an automatic pipeline for testing evolutionary hypothesis at the genome-wide level.

## Description

GWideCodeML is a pipeline written in Python useful for testing evolutionary hypothesis at genome-wide level. 

For more information please visit https://github.com/lauguma/GWideCodeML/wiki


## Release history

* v1.0.0 Released on 2020/xx/xx


## Requirements

Python 3.5. or higher.


### Python libraries 

Biopython 
Scipy 
ete3 

Easy installation recommended via pip install.

### Software 

PAML (Phylogenetics Analysis by Maximum Likelihood). http://abacus.gene.ucl.ac.uk/software/paml.html 
This package contains different programs. It will be necessary to have codeml executable file in the working directory or export the path containing this executable file to the environment.

## Citations
Macías L. G., Barrio E. and Toft. C. GWideCodeML: an automatic pipeline for testing evolutionary hypothesis at the genome-wide level (unpublished).

Our pipeline uses third-party software. If you are using GWideCodeML, please, also cite:

Yang, Z. "PAML 4: a program package for phylogenetic analysis by maximum likelihood."
Mol Biol Evol (2017) doi: 10.1093/molbev/msm088 

Huerta-Cepas, J., Serra, F and Bork, P. "ETE 3: Reconstruction,
analysis and visualization of phylogenomic data."  Mol Biol Evol (2016) doi:
10.1093/molbev/msw046
pycloud189 0.0.4
Cloud189 cloud disk utility for Python3+
Keywords: cloud189

# Pycloud189
An easy to use Python3 package that interact with the cloud189 cloud disk service.

## Installation  
### Install with pip  
```
pip install pycloud189
```

## Quick Start
1. Add `pycloud189.api.cloudpan189 import Cloudpan189` to the beginning of your code.
2. Initialize a new Cloudpan189 object using `api = Cloudpan189()`.
3. Then specify the `cloudpan189-go` execute file locate folder path call for example `api.setCloudpan189GoDirPath('/Users/tickstep/cloudpan189-go-v0.0.5-darwin-macos-amd64')`.
If you do not has the `cloudpan189-go` file you can download it freely from [here](https://github.com/tickstep/cloudpan189-go/releases).
4. Now everything is get ready, you can do all the thing that cloud189 supports such as: login, ls, upload, download, etc.

## Example 
Here is a example code show how to do
```
from pycloud189.api.cloudpan189 import Cloudpan189

if __name__ == '__main__':
    api = Cloudpan189()

    # set the 'cloudpan189-go' execute file dir path
    api.setCloudpan189GoDirPath('/Users/tickstep/cloudpan189-go-v0.0.5-darwin-macos-amd64')

    # of course, we need login first
    # if you do not has an account, register one from https://cloud.189.cn
    if not api.isLogin():
        print(api.login('usernmae@189.cn', 'password'))

    # version
    print(api.version())

    # get list file of current work dir
    print(api.ls(''))

    # change word dir
    print(api.cd('/folder2020'))

    # show current work dir
    print(api.pwd())

    # upload file
    print(api.upload('/Users/tickstep/Downloads/testfile2020.txt', '/folder2020'))

    # download file
    print(api.download('/folder2020/testfile2020.txt'))
```

## [Change logs](https://github.com/tickstep/python-cloudpan189-api/blob/master/CHANGELOG.md)
awscloud 0.0.1
A Python Package to List AWS Cloud Resources for Different AWS Services!
Requires Python: >=3.8

# awscloud

A Python Package to List AWS Cloud Resources for Different AWS Services!

## Installation

Use the package manager [pip](https://pip.pypa.io/en/stable/) to install awscloud.

```bash
pip install awscloud
```

## Usage

```python

import boto3, awscloud
from datetime import datetime, timedelta

## Below Start & End Date is used for Metrics Such as EC2's CPU Percentage etc.
start_date = datetime.now() - timedelta(days = 7)
end_date = datetime.now()

## Returns List of Attributes and Methods of this Package / Module.
print( dir( awscloud.AWSCloud ) )

## Refer Configuration from https://boto3.amazonaws.com/v1/documentation/api/latest/guide/configuration.html
aws_object = awscloud.AWSCloud( session = boto3.Session( profile_name = PROFILE_NAME, region_name = REGION_NAME ) )

## List AWS EC2 Instances.
print( aws_object.List_EC2_Instances() )

## List AWS EC2 Volumes.
print( aws_object.List_EC2_Volumes() )

## List AWS EC2 Snapshots.
print( aws_object.List_EC2_Snapshots() )

## List AWS EC2 Security Groups.
print( aws_object.List_EC2_Security_Groups() )

## List AWS EC2 Load Balancers.
print( aws_object.List_EC2_Load_Balancers() )

## List AWS EC2 Network Interfaces.
print( aws_object.List_EC2_Network_Interfaces() )

## List AWS EC2 Key Pairs.
print( aws_object.List_EC2_Key_Pairs() )

## List AWS Elastic Beanstalk Applications.
print( aws_object.List_Elastic_Beanstalk_Apps() )

## List AWS S3 Buckets.
print( aws_object.List_S3_Buckets() )

## List AWS Lambda Functions.
print( aws_object.List_Lambda_Functions() )

## List AWS RDS Databases.
print( aws_object.List_AWS_RDS() )

## List AWS EC2 CPU Utilization Metrics.
print( aws_object.Get_EC2_CPU_Metrics( start_date = start_date, end_date = end_date ) )

## List AWS Trusted Advisor for Cost Optimizing.
print( aws_object.List_Cost_Trust_Advisor() )

```


## Contributing
Pull Requests are Welcome. For Major Changes, Please Open an issue First to Discuss What You Would like to Change.

Please Make Sure to Update Tests as Appropriate.

## License
[MIT](https://choosealicense.com/licenses/mit/)
bkey 4.0
Shortcut Key Adder Tools For Termux Users
Requires Python: >=2.7

**About BKEY**

BKEY is a python based script. You can use this tool for adding Shortcut key in your Termux. This tool works on both rooted Android device and Non-rooted Android device.

**Installation :**

* `pkg install pip && pkg install pip2`
* `pip2 install bkey`

**Tool Run**

* Type **`bkey`**

**FOLLOW ME ON**

- **YOUTUBE** : https://www.youtube.com/MasterTrick1
- **WEBSITE** :  https://www.mastertrick.design
- **FACEBOOK GROUP** :  https://www.facebook.com/groups/231747098048450
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- **INSTAGRAM** :  https://www.instagram.com/MehtanOfficial
- **GITHUB** :  https://www.github.com/BotolMehedi

### Warning

**This tool is only for educational purpose. If you use this tool for other purposes except education we will not be responsible in such cases.**


BKEY
=========

V4.0 (05/10/2020)
------------------------------

- LAST RELEASE