semvec/pypi-packages huggingface dataset:
napari-brainreg-standard 0.0.3
Visualise brainreg registration output in standard space
License: MIT
Requires Python: >=3.6

# napari-brainreg-standard

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Visualise [brainreg](https://github.com/brainglobe/brainreg) registration output in [napari](https://github.com/napari/napari)

Based on the [napari cookiecutter plugin template](https://github.com/napari/cookiecutter-napari-plugin) and [napari-ndtiffs](https://github.com/tlambert03/napari-ndtiffs) by [@tlambert03](https://github.com/tlambert03)

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## Installation
Assuming you already have [napari](https://github.com/napari/napari) installed, you can install `napari-brainreg-standard` via pip:

    pip install napari-brainreg-standard

## Usage
Open napari and drag your [brainreg](https://github.com/brainglobe/brainreg) output directory (the one with the log file) onto the napari window.
    
Various images should then open, including:
* `Image (downsampled)` - the image used for registration
* `Annotations` - the atlas labels

If you downsampled additional channels, these will also be loaded.