semvec/pypi-packages huggingface dataset:
sphinxcontrib-ansi 0.6.dev20201023
Sphinx extension ansi
License: BSD

####################
sphinxcontrib-ansi
####################

http://packages.python.org/sphinxcontrib-ansi

A Sphinx_ extension, which turns ANSI color sequences in Sphinx documents
into colored HTML output.


Installation
------------

This extension can be installed from the Python Package Index::

   pip install sphinxcontrib-ansi

Alternatively, you can clone the sphinx-contrib_ repository from BitBucket,
and install the extension directly from the repository::

   hg clone http://bitbucket.org/birkenfeld/sphinx-contrib
   cd sphinx-contrib/ansi
   python setup.py install


Usage
-----

Please refer to the documentation_ for further information.


.. _`Sphinx`: http://sphinx.pocoo.org/latest
.. _`sphinx-contrib`: http://bitbucket.org/birkenfeld/sphinx-contrib
.. _documentation: http://packages.python.org/sphinxcontrib-ansi
dendritic-arborization-tracer 0.1
A tool to segment dendrites
License: BSD
Requires Python: >=3.6

# Dendritic Arborization Tracer

Dendritic Arborization Tracer is a tool to segment neurons along with their dendrites. Ideally, it takes a single channel image as input. 

- The neuron mask is detected in the 'Mask neuron' tab
- The cell body mask is detected in the 'Mask cell body' tab
- Finally, the neuron is skeletonized in the 'Segment dendrites' tab using skeletonization or using the watershed algotrithm. Once skeletonized, the neuron can be further segmented to identify dendrites.

# Install

1. Install [python 3.7](https://www.python.org/downloads/) or [Anaconda 3.7](https://www.anaconda.com/distribution/) (if not already present on your system)

2. In a command prompt type: 

    ```
    pip install --user --upgrade dendritic-arborization-tracer
    ```
    or
    ```
    pip3 install --user --upgrade dendritic-arborization-tracer
    ```
    NB:
    - To open a **command prompt** on **Windows** press **'Windows'+R** then type **'cmd'**
    - To open a **command prompt** on **MacOS** press **'Command'+Space** then type in **'Terminal'**

3. To open the graphical user interface, type the following in a command:
    ```
    python -m dendritic_arborization_tracer
    ```
    or
    ```
    python3 -m dendritic_arborization_tracer
    ```