semvec/pypi-packages huggingface dataset:
srrTomat0 0.1.0
SRR Pipelines: Building matrixes from raw read data

# srrTomat0

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This is a set of pipelines to create expression and prior matrices for network inference. They are designed to create
data that is compatible with the [inferelator](https://github.com/flatironinstitute/inferelator) package. In addition to
python dependencies, this package also requires 
[STAR](https://github.com/alexdobin/STAR),
[sra-tools](http://ncbi.github.io/sra-tools/), 
[bedtools](https://bedtools.readthedocs.io/en/latest/),
[samtools](http://www.htslib.org/),
[homer](http://homer.ucsd.edu/homer/), and
[fimo](http://meme-suite.org/doc/fimo.html).