semvec/pypi-packages huggingface dataset:
bio2bel-mirtarbase 0.2.2
A package for converting miRTarBase to BEL
License: MIT License
Keywords: Biological Expression Language,Micro-RNA,Systems Biology,Networks Biology

Bio2BEL miRTarBase |build| |coverage| |documentation| |zenodo|
==============================================================
Serializes text-mined miRNA-target interactions to BEL

Installation |pypi_version| |python_versions| |pypi_license|
------------------------------------------------------------
``bio2bel_mirtarbase`` can be installed easily from `PyPI <https://pypi.python.org/pypi/bio2bel_mirtarbase>`_ with the
following code in your favorite terminal:

.. code-block:: sh

    $ python3 -m pip install bio2bel_mirtarbase

or from the latest code on `GitHub <https://github.com/bio2bel/mirtarbase>`_ with:

.. code-block:: sh

    $ python3 -m pip install git+https://github.com/bio2bel/mirtarbase.git@master

Setup
-----
miRTarBase can be downloaded and populated from either the Python REPL or the automatically installed command line
utility.

Python REPL
~~~~~~~~~~~
.. code-block:: python

    >>> import bio2bel_mirtarbase
    >>> mirtarbase_manager = bio2bel_mirtarbase.Manager()
    >>> mirtarbase_manager.populate()

Command Line Utility
~~~~~~~~~~~~~~~~~~~~
.. code-block:: bash

    bio2bel_mirtarbase populate

Citations
---------
- Chih-Hung Chou, et al; miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database.
  Nucleic Acids Res 2016; 44 (D1): D239-D247. doi: 10.1093/nar/gkv1258

Links
-----
- http://mirtarbase.mbc.nctu.edu.tw/

.. |build| image:: https://travis-ci.org/bio2bel/mirtarbase.svg?branch=master
    :target: https://travis-ci.org/bio2bel/mirtarbase
    :alt: Build Status

.. |coverage| image:: https://codecov.io/gh/bio2bel/mirtarbase/coverage.svg?branch=master
    :target: https://codecov.io/gh/bio2bel/mirtarbase?branch=master
    :alt: Coverage Status

.. |documentation| image:: https://readthedocs.org/projects/mirtarbase/badge/?version=latest
    :target: http://mirtarbase.readthedocs.io
    :alt: Documentation Status

.. |climate| image:: https://codeclimate.com/github/bio2bel/mirtarbase/badges/gpa.svg
    :target: https://codeclimate.com/github/bio2bel/mirtarbase
    :alt: Code Climate

.. |python_versions| image:: https://img.shields.io/pypi/pyversions/bio2bel_mirtarbase.svg
    :alt: Stable Supported Python Versions

.. |pypi_version| image:: https://img.shields.io/pypi/v/bio2bel_mirtarbase.svg
    :alt: Current version on PyPI

.. |pypi_license| image:: https://img.shields.io/pypi/l/bio2bel_mirtarbase.svg
    :alt: MIT License

.. |zenodo| image:: https://zenodo.org/badge/95350968.svg
    :target: https://zenodo.org/badge/latestdoi/95350968
    :alt: Zenodo DOI