semvec/pypi-packages huggingface dataset:
AltAnalyze 2.1.3.15
User Friendly Application for Comprehensive Transcriptome Analysis
License: Apache
Keywords: bioinformatics,transcriptome analysis,gene expression

AltAnalyze
=======================

AltAnalyze is an extremely user-friendly and open-source toolkit that can be used for a broad range of genomics analyses. These analyses include the direct processing of raw RNASeq or microarray data files, advanced methods for single-cell population discovery with ICGS, differential expression analyses, analysis of alternative splicing/promoter/polyadenylation and advanced isoform function prediction analysis (protein, domain and microRNA targeting). Multiple advanced visualization tools and à la carte analysis methods are supported in AltAnalyze (e.g., network, pathway, splicing graph). AltAnalyze is compatible with various data inputs for RNASeq data (FASTQ, BAM, BED), microarray platforms (Gene 1.0, Exon 1.0, junction and 3' arrays). This software requires no advanced knowledge of bioinformatics programs or scripting or advanced computer hardware. User friendly `videos <https://www.google.com/search?q=altanalyze&tbm=vid&cad=h>`_, `online tutorials <https://github.com/nsalomonis/altanalyze/wiki/Tutorials>`_ and `blog posts <http://altanalyze.blogspot.com/>`_ are also available.

AltAnalyze documentation can be found on `Read The Docs <http://altanalyze.readthedocs.io/en/latest/>`_ and stand-alone archives are provided at `sourceforge <https://sourceforge.net/projects/altanalyze/files/>`_ as well as at `GitHub <https://github.com/nsalomonis/altanalyze>`_.

.. image:: https://raw.githubusercontent.com/wiki/nsalomonis/altanalyze/images/AltAnalyzeOverview.gif