semvec/pypi-packages huggingface dataset:
pyDOTtest 1.0.0
pyDOTtest: simple powerful testing with Python
License: MIT
Requires Python: >=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*

.. image:: https://docs.pytest.org/en/latest/_static/pytest1.png
   :target: https://docs.pytest.org/en/latest/
   :align: center
   :alt: pytest


------

.. image:: https://img.shields.io/pypi/v/pytest.svg
    :target: https://pypi.org/project/pytest/

.. image:: https://img.shields.io/conda/vn/conda-forge/pytest.svg
    :target: https://anaconda.org/conda-forge/pytest

.. image:: https://img.shields.io/pypi/pyversions/pytest.svg
    :target: https://pypi.org/project/pytest/

.. image:: https://codecov.io/gh/pytest-dev/pytest/branch/master/graph/badge.svg
    :target: https://codecov.io/gh/pytest-dev/pytest
    :alt: Code coverage Status

.. image:: https://travis-ci.org/pytest-dev/pytest.svg?branch=master
    :target: https://travis-ci.org/pytest-dev/pytest

.. image:: https://dev.azure.com/pytest-dev/pytest/_apis/build/status/pytest-CI?branchName=master
    :target: https://dev.azure.com/pytest-dev/pytest

.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
    :target: https://github.com/ambv/black

.. image:: https://www.codetriage.com/pytest-dev/pytest/badges/users.svg
    :target: https://www.codetriage.com/pytest-dev/pytest

The ``pytest`` framework makes it easy to write small tests, yet
scales to support complex functional testing for applications and libraries.
qqmusicbox 0.1.1
qq music in commandline
License: MIT
Requires Python: >=3.5.0


# QQMusicBox

![Build Status](https://travis-ci.org/lai-bluejay/qqmusicbox.svg?branch=master)
![PyPI](https://img.shields.io/pypi/v/qqmusicbox.svg?style=flat)
![GitHub code size in bytes](https://img.shields.io/github/languages/code-size/lai-bluejay/qqmusicbox.svg)

只要有声卡，命令行也能播放音乐


看到一款[命令行的网易云��](https://github.com/darknessomi/musicbox/)，忍不住想照着开发一个同款的QQ音乐，整体代码结构还是参考darkness的版本，在此版本上微调。qq音乐api会和[meik-h](https://github.com/MeiK-h/QQMusicAPI)一起维护

## 特性

暂时只支持搜索音乐.......

### 键盘快捷键

| Key   | Effect          |           |
| ----- | --------------- | --------- |
| j     | Down            | 下移        |
| k     | Up              | 上移        |
| h     | Back            | 后退        |
| l     | Forword         | 前进        |
| u     | Prev page       | 上一页       |
| d     | Next page       | 下一页       |
| f     | Search          | 快速搜索      |
| \[    | Prev song       | 上一曲       |
| ]     | Next song       | 下一曲       |
| =     | Volume +        | 音量增加      |
| -     | Volume -        | 音量减少      |
| Space | Play/Pause      | 播放/暂停     |
| m     | Menu            | 主菜单       |
| p     | Present/History | 当前/历史播放列表 |
| i     | Music Info      | 当前音乐信息    |
| ⇧+p   | Playing Mode    | 播放模式切换    |
| ⇧+a   | Enter album     | 进入专辑      |
| g     | To the first    | 跳至首项      |
| ⇧+g   | To the end      | 跳至尾项      |

## 安装

### 必选依赖

1.  `mpg123` 用于播放歌曲  自行搜索一下安装办法吧


### PyPi安装

    $ pip install qqmusicbox

### Git clone安装master分支

    $ git clone https://github.com/lai-bluejay/qqmusicbox.git && cd qqmusicbox
    $ python setup.py install

### macOS安装

    $ pip install qqmusicbox
    $ brew install mpg123

### Linux安装

#### Ubuntu/Debian

    $ (sudo) pip install qqmusicbox

    $ (sudo) apt-get install mpg123


#### Centos/Red Hat

    $ (sudo) pip(3) install qqmusicbox
    $ (sudo) wget http://mirror.centos.org/centos/7/os/x86_64/Packages/mpg123-1.25.6-1.el7.x86_64.rpm
    $ (sudo) yum install mpg123-1.25.6-1.el7.x86_64.rpm
buty_full 1.0.1
Inferring traits by 16S
License: MIT
Keywords: 16S

# buty_full
## Introduction
* buty_full infers traits by 16S
* input: otu table (-t) and otu sequences (-s)
* requirement: mafft
* Optional: fasttree
![alt text](https://raw.githubusercontent.com/caozhichongchong/buty_full/master/Methodology.png)

## Install
`pip install buty_full`\
in preparation: `anaconda download caozhichongchong/buty_full`

## Availability
in preparation: https://anaconda.org/caozhichongchong/buty_full

https://pypi.org/project/buty_full

## How to use it
1. test the buty_full\
`buty_full --test`

2. try your data\
`buty_full -t your.otu.table -s your.otu.seqs`\
`buty_full -t your.otu.table -s your.otu.seqs -top 2000`

3. try different traits (default is butyrate production)\
predicting butyrate production\
`buty_full -t your.otu.table -s your.otu.seqs --rs your.own.reference.16s`\
or\
`buty_full -t your.otu.table -s your.otu.seqs --rs your.own.reference.16s --rt b`\
predicting sulfate reduction (in preparation, not yet)\
`buty_full -t your.otu.table -s your.otu.seqs --rs your.own.reference.16s --rt s`\
predicting nitrate reduction (in preparation, not yet)\
`buty_full -t your.otu.table -s your.otu.seqs --rs your.own.reference.16s --rt n`

4. use your own traits\
`buty_full -t your.otu.table -s your.otu.seqs --rs your.own.reference.16s --rt your.own.reference.traits`

* your.own.reference.16s is a fasta file containing the 16S sequences of your genomes\
\>Genome_ID1\
ATGC...\
\>Genome_ID2\
ATGC...

* your.own.reference.traits is a metadata of whether there's trait in your genomes (0 for no and 1 for yes)\
Genome_ID1   0\
Genome_ID1   1

## Results
The result dir of "Bayers_model":
* `filename.infertraits.txt`: the OTUs inferring as butyrate-producing bacteria (1.0, 0.5) 
and non-butyrate-producing bacteria (0.0).
* `filename.infertraits.abu`: the total abundance of butyrate-producing bacteria in all samples.
* `filename.infertraits.otu_table`: the otu_table of butyrate-producing bacteria in all samples.

The result dir of "Filtered_OTU":
* Some temp files of filtered OTUs, alignment, and tree.

## Copyright
Copyright: An Ni Zhang, Prof. Eric Alm, Alm Lab in MIT\
Citation: Not yet, coming soon!\
Contact: anniz44@mit.edu