semvec/pypi-packages huggingface dataset:
fractalize-nlp 0.0.7
Fractalize NLP Tools
Requires Python: >=3.6

# Fractalize NLP
A group of Modules encompassing common components that are used in all Fractalize NLP products and deployments

## string_generators
Module that enables encoding of structured domain knowledge into a conditional processing graph. The conditional
processing graph is used to generate random samples of unstructured strings which represent natural language
invocations of the underlying domain knowledge

## Building the package
To build a deployable binary including source files execute:
```console
$ python3 setup.py sdist bdist_wheel
```
This will produce fractalize_nlp/dist/fractalize_nlp-<version>-py3.7.egg

If planning to publish the package, update the version number in setup.py first. 

## Publishing the package
Use PyPi to distribute the package as follows: 

```console
$ twine upload dist/fractalize-nlp-<build version>
```
Note: 
1. Make sure the package has been built with the correct version number. 
2. Make sure all the code changes have been merged before publishing the package.

## Testing the package
To run the test suite, run either:
```console
$ pytest 
```
or
```console
$ coverage run -m pytest
```
To generate the coverage report, the test suite must be invoked via coverage first. Then, run:
```console
$ coverage report -m <module_name>/<relevant_script>.py
```
To generate the full coverage report, run:
```console
$ coverage report -m
```
## License
MIT © fractal-dataminds
ventiliser 1.0.0
Provides a pipeline for segmenting pressure and flow data from ventilators into individual breaths with an attempt to identify sub-phases. Developed on data from neonates ventilated on Draeger ventilators

### Ventiliser

Ventiliser is a tool for segmenting pressure and flow waveforms from ventilators into breaths. It also attempts to find the position of breath sub-phases. Ventiliser was developed on data from neonates ventialted on Draeger ventilators.

Please see the accompanying paper ["Computational analysis of neonatal ventilator waveforms and loops"](https://doi.org/10.1038/s41390-020-01301-9) for details

### Installation

Ventiliser depends on numpy, pandas, scipy, atpbar, and PyQT5. Installation via pip is recommended.

```python
pip install ventiliser
```

### Usage

An example of a simple script can be seen below

```python
from ventiliser.GeneralPipeline import GeneralPipeline

pipeline = GeneralPipeline()
pipeline.configure() # For information on parameters you can configure see docs
pipeline.load_data("path to data", [0,1,2]) # [0,1,2] refers to the columns in your data file corresponding to time, pressure, flow
pipeline.process() # You can suppress log and output files by setting them false. See docs for more information

# To access the breaths programmatically you can do as follows
pipeline.labeller.get_breaths_raw()
# To access the pressure and state labels programmatically you can do as follows
pipeline.mapper.p_labels
pipeline.mapper.f_labels
```

Please view the docs for more detailed information on optional parameters.

### Contact

For questions please email

gbelteki@aol.com (Dr. Gusztav Belteki)

dtwc3@cam.ac.uk (David Chong)

### License

Copyright (c) 2020 David Chong Tian Wei, Gusztav Belteki

Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.