semvec/pypi-packages huggingface dataset:
dsne 0.1.6
DSNE algorithms
License: Apache License, Version 2.0
Requires Python: >=3.6
Keywords: DSNE,algorithms,numpy,cython

# DSNE
Visualizing Data Velocity using DSNE. [Preprint](https://arxiv.org/abs/2103.08509). 
Python library containing DSNE algorithms. 
![png](./examples/data/Pancreas/scvelo_pancreas_dsne_umap_stream.png)
## Installation

## Requirements

- [cblas](http://www.netlib.org/blas/) or [openblas](https://github.com/xianyi/OpenBLAS).
Tested version is v0.2.5 and v0.2.6 (not necessary for OSX).

From Github:

```
git clone https://github.com/songtingstone/dsne
cd dsne/
make cleanpackage 
```

From PyPI:

```
pip install dsne
```

From conda:

```
conda install -c maxibor dsne
```

## Usage

Basic usage:

```python
from dsne import DSNE
W = DSNE(X,V,Y)
```

### Examples

- [Simulation with Exact Velocity Embeddings](https://github.com/songtingstone/dsne/examples/exact_simulation.py)
- [Simulation with Approximate Velocity Embeddings](https://github.com/songtingstone/dsne/examples/unexact_simulation.py)
- [Pancreas](https://github.com/songtingstone/dsne/examples/Pancreas.py) 
## Algorithms

### DSNE 
Direction Stochastic Nearnest Neighbor Embedding of Velocity