semvec/pypi-packages huggingface dataset:
napari-subboxer 0.0.1
A napari plugin for interacting with electron cryotomograms
License: BSD-3-Clause
Requires Python: >=3.7

# napari-subboxer

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A napari plugin for visualising and interacting with electron cryotomograms.


## Installation

You can install `napari-subboxer` via [pip]:

    pip install napari-subboxer

## Usage

This plugin provides a user interface for opening electron cryotomograms in 
napari as both volumes and slices through volumes.

![demo](https://user-images.githubusercontent.com/7307488/138575305-b05c4735-9c03-4629-bfb0-9612ea8f26fd.gif)

The plugin can be opened from the `plugins` menu in napari, or with 
`napari-subboxer` at the command line.

![plugins-menu](https://user-images.githubusercontent.com/7307488/138575015-00ea78d9-02c1-44bc-9034-0c0a7fa8d973.png)

```yaml
Usage: napari-subboxer [TOMOGRAM_FILE]

  An interactive tool for defining and applying relative transforms
  on sets of particles in napari.

Arguments:
  [TOMOGRAM_FILE]

Options:
  --help                          Show this message and exit.

```

## Contributing

Contributions are very welcome. 

## License

Distributed under the terms of the [BSD-3] license,
"napari-subboxer" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/alisterburt/napari-subboxer/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/