semvec/pypi-packages huggingface dataset:
dewr 0.0.7
A small example package
License: MIT
Requires Python: >=3.6

# dewr

## Feature:
* Restart job when start or files change.
* Kill job when exit.

## Install
```sh
pip3 install -U dewr
```

## Usage
```py
import logging
import dewr
logging.basicConfig(
	level=logging.INFO, format="%(asctime)s\t%(levelname)s\t%(name)s\t%(message)s"
)
dewr.WatchRestart(["."], r"\.(?:pid|log)$", ["sh", "sleep66.sh"])

```

```sh
dewr -d . /Another/Dir/To/Watch -e "\.(pid|log)$|^(dist|bin|log|node_modules|\.git)(/|$)" -- sleep66.sh
```
pythontohtml 1.0.0
python functions to HTML
License: MIT
Requires Python: >=3.6


pythontohtml : python functions to HTML

USAGE
=====

```
from pythontohtml.htmlTags import html, div, header, h1, italic

html(
    div(
        header(h1("This is Header",id="main-header",className="header")),

        div(italic(("Let`s try this!"))),

        id="main-container",
        other_attr={
            "data-id" : 23
        },
    ),
    title="Testing..."
)
```
TrajectoryNet 0.2.4
A neural ode solution for imputing trajectories between pointclouds.
License: MIT

Pytorch Implementation of TrajectoryNet
=======================================

This library runs code associated with the TrajectoryNet paper [1].


Installation
------------

TrajectoryNet is available in `pypi`. Install by running the following

.. code-block:: bash

    pip install TrajectoryNet

This code was tested with python 3.7 and 3.8.

Example
-------

.. image:: figures/eb_high_quality.png
    :alt: EB PHATE Scatterplot
    :height: 300

.. image:: figures/EB-Trajectory.gif
    :alt: Trajectory of density over time
    :height: 300


Basic Usage
-----------

Run with

.. code-block:: bash

    python -m TrajectoryNet.main --dataset SCURVE

To use a custom dataset expose the coordinates and timepoint information according to the example jupyter notebooks in the `/notebooks/` folder.

TrajectoryNet requires the following:

1. An embedding matrix titled `[embedding_name]` (Cells x Dimensions)
2. A sample labels array titled `sample_labels` (Cells)
3. (Optionally) a delta embedding representing RNA velocity titled `delta_[embedding_name]` (Cells x Dimensions)



To run TrajectoryNet with a custom dataset use:

.. code-block:: bash

    python -m TrajectoryNet.main --dataset [PATH_TO_NPZ_FILE] --embedding_name [EMBEDDING_NAME]
    python -m TrajectoryNet.eval --dataset [PATH_TO_NPZ_FILE] --embedding_name [EMBEDDING_NAME]


See `notebooks/EB-Eval.ipynb` for an example on how to use TrajectoryNet on a PCA embedding to get trajectories in the gene space.


References
----------
[1] Tong, A., Huang, J., Wolf, G., van Dijk, D., and Krishnaswamy, S. TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics. In International Conference on Machine Learning, 2020. `arxiv <http://arxiv.org/abs/2002.04461>`_ `ICML <https://proceedings.icml.cc/paper/2020/hash/9d740bd0f36aaa312c8d504e28c42163>`_

---

If you found this library useful, please consider citing::

    @inproceedings{tong2020trajectorynet,
      title = {TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics},
      shorttitle = {{{TrajectoryNet}}},
      booktitle = {Proceedings of the 37th International Conference on Machine Learning},
      author = {Tong, Alexander and Huang, Jessie and Wolf, Guy and {van Dijk}, David and Krishnaswamy, Smita},
      year = {2020}
    }
pytoHTML 1.0.1
python functions to HTML
License: MIT
Requires Python: >=3.6


pytohtml : python functions to HTML

USAGE
=====

from pytohtml.htmlTags import html, div, header, h1, italic

html(
    div(
        header(h1("This is Header",id="main-header",className="header")),

        div(italic(("Let`s try this!"))),

        id="main-container",
        other_attr={
            "data-id" : 23
        },
    ),
    title="Testing..."
)