semvec/pypi-packages huggingface dataset:
demultiplex 1.2.2
Demultiplex any number of FASTA or a FASTQ files based on a list of barcodes
License: MIT
Keywords: bioinformatics

Demultiplex: FASTA/FASTQ demultiplexer
======================================

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Versatile NGS demultiplexer with the following features:

- Support for FASTA and FASTQ files.
- Support for gzip and bzip2 compressed files.
- Support for multiple reads per fragment, e.g., paired-end.
- Handles barcodes in the header and in the reads.
- Handles barcodes at *unknown* locations in reads (e.g., PacBio or Nanopore
  barcodes).
- Support for selection of part of a barcode.
- Allows for mismatches, insertions and deletions.
- Barcode guessing by frequency or fixed amount.
- Handles large numbers (over one million) of barcodes.

Please see ReadTheDocs_ for the latest documentation.


.. _ReadTheDocs: https://demultiplex.readthedocs.io/en/latest/index.html
tssv 1.1.2
Targeted characterisation of short structural variation.
License: MIT
Keywords: bioinformatics

TSSV: Targeted characterisation of short structural variation
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TSSV is a program that does targeted characterisation of short structural
variation. It can be used for STR analysis, or any other type of targeted
analysis. It characterises any variation between a set of user-defined markers.

TSSV is platform-independent. It has been tested on Linux, macOS, and Windows.

Please see ReadTheDocs_ for the latest documentation.


.. _ReadTheDocs: https://tssv.readthedocs.io/en/latest/index.html