semvec/pypi-packages huggingface dataset:
cereal-py 1.0.3
Create an iterable set of pointers to a specified length. Utilities for working with ZeroIntensity's pointers.py
License: MIT
Keywords: python,cereal,pointers

# cereal
Parallelization requires tools to reference data without overuse of memory. cereal allows you to reference PyObjects to pointers without creating a deep copy in memory. An extension for [ZeroIntensity's](https://github.com/ZeroIntensity/pointers.py) pointers.py.

cereal:
- [Documentation](https://cereal-py.netlify.app)
- [Repository](https://github.com/joshua-auchincloss/cereal-py)
- [PyPI](https://pypi.org/project/cereal-py)

pointers.py:
- [Author](https://github.com/ZeroIntensity)
- [Documentation](https://pointerspy.netlify.app/)
- [Repository](https://github.com/ZeroIntensity/pointers.py)
- [PyPI](https://pypi.org/project/pointers.py)

```py
import numpy as np
from cereal import eat

x = [1, 2, 3, 4]

yum = eat(x, its = 4, np.array, copy = False)

>> yum
>> array([<pointer to list object at 0x113b3edc0>,
          <pointer to list object at 0x113b3edc0>,
          <pointer to list object at 0x113b3edc0>,
          <pointer to list object at 0x113b3edc0>], dtype=object) # 4 pointers to the original object

>> (~yum[0])[0]
>> 1

yum[0][0] = 4

>> x # the original object
>> [4, 2, 3, 4] # it changed!
```
CIRI-long 1.1.0
circular RNA identification from Nanopore
License: MIT
Requires Python: >3.7.0
Keywords: circRNA

## CIRI-long: circular RNA identifier using long-read sequencing data
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Circular RNA Identification for Long-Reads Nanopore Sequencing Data

### Documentation

Documentation is available online at [https://ciri-cookbook.readthedocs.io/en/latest](https://ciri-cookbook.readthedocs.io/en/latest/CIRI-long_0_home.html#)

### Author

Authors: Jinyang Zhang(zhangjinyang@biols.ac.cn), Fangqing Zhao(zhfq@biols.ac.cn)

Maintainer: Jinyang Zhang

### Release Notes

- version 1.1.0: Add convert_bed.py, update pyccs dependency, fixed bugs
- version 1.0.3: Add output of circRNA isoform usage index, fixed bugs
- version 1.0.2: Add fast mode for ccs detection and option for user-provided circRNA annotation
- version 1.0.1: Fixed bug
- version 1.0: First released version

### License

The code is released under the MIT License. See the `LICENSE` file for more detail

### Citing CIRI-long

> Zhang, J., Hou, L., Zuo, Z., Ji, P., Zhang, X., Xue, Y., & Zhao, F. (2021). Comprehensive profiling of circular RNAs with nanopore sequencing and CIRI-long. Nature Biotechnology. https://doi.org/10.1038/s41587-021-00842-6