semvec/pypi-packages huggingface dataset:
napari-wsireg 0.1.2
plugin to perform whole slide image registration with wsireg
License: BSD-3-Clause
Requires Python: >=3.8

# napari-wsireg

![Alt text](https://github.com/NHPatterson/napari-wsireg/blob/main/src/napari_wsireg/gui/resources/wsireg-logo-light.svg?raw=true "wsireg")

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Plugin to perform whole slide image registration based on wsireg.

Please see [wsireg](https://github.com/nhpatterson/wsireg) for more info image formats, features and how registration works.


## Usage

Add images from napari layers or from file and set up "registration paths" between them. OME-TIFF is best supported format.

### Constructed registration graph in action

![Alt Text](assets/graph_in_action.gif)


_Solid arrows_: direct registration between two images.

_Dashed arrows_: indriect registration paths.

## Installation

You can install `napari-wsireg` via [pip]:

    pip install napari-wsireg



To install latest development version :

    pip install git+https://github.com/nhpatterson/napari-wsireg.git


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"napari-wsireg" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/nhpatterson/napari-wsireg/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/