episcanpy 0.4.0
Epigenomics Single-Cell Analysis in Python.
License: BSD
Requires Python: >=3.5


EpiScanpy – Epigenomics single cell analysis in python
======================================================

**EpiScanpy** is a toolkit to analyse single-cell open chromatin (scATAC-seq) and single-cell DNA methylation (for example scBS-seq) data. **EpiScanpy** is the epigenomic extension of the very popular scRNA-seq analysis tool **Scanpy** (`Genome Biology <https://doi.org/10.1186/s13059-017-1382-0>`__, 2018) [Wolf18]. For more information on scanpy, read the following `documentation <https://scanpy.readthedocs.io>`__. 

EpiScanpy paper is now accessible on `Nature Communications <https://www.nature.com/articles/s41467-021-25131-3>`__. For more information on how to use the package, more information are available on the `website <https://colomemaria.github.io/episcanpy_doc>`__. 


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    * - Build status via Conda
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    * - Operating System
      - | |ubuntu-20.04| |macOS Catalina| |windows-latest|
    * - Document status
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    * - Github status
      - | |GitHub contributors| |GitHub stars| |GitHub forks| |GitHub watchers| |GitHub followers| 

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Documentation
=============

The documentation for epiScanpy is available `here <https://colomemaria.github.io/episcanpy_doc/>`__. If epiScanpy is useful to your research, consider citing `epiScanpy <https://www.nature.com/articles/s41467-021-25131-3>`__.