semvec/pypi-packages huggingface dataset:
ois-api-client 0.3.6
A python client library for the hungarian Online Invoice System API
Requires Python: >=3.7.0

# ois_api_client
**Online Invoice System API Client**

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*API Version: 3.0*

**The library is under active development!**

## What is it?
**ois_api_client** is a python client library for the hungarian, offical Online Invoice System public API.
You can find the API documentation here:

https://onlineszamla.nav.gov.hu/dokumentaciok

**Implemented API requests:**
- query_invoice_digest
- query_invoice_data
- token_exchange

## User guide
[Getting started](https://github.com/peterkulik/ois_api_client/wiki/Getting-started)

[Error handling](https://github.com/peterkulik/ois_api_client/wiki/Error-handling)

[Invoice structure](https://raw.githubusercontent.com/peterkulik/ois_api_client/api-3.0/puml/svg/invoice.svg)

## License
[MIT](LICENSE)
seqalign 0.1.15
Manage sequence alignments

# seqalign

Manage sequence alignments

## Installation

```sh
pip install seqalign
```
or
```sh
pip install --user seqalign
```

If you have not already installed [picardtools](https://github.com/anthony-aylward/picardtools),
you will also need to run:
```sh
picardtools-download
```

## Examples

```python
with SequenceAlignment(<path to input BAM or FASTQ file>) as sa:
    sa.cleans_up_bam = False
    sa.remove_supplementary_alignments()
    sa.samtools_sort(memory_limit=10)
    sa.samtools_index()
    sa.write(<path to output BAM file>)
```

## Notes

The `input_file` argument to `SequenceAlignment()` should be a string for
single-end reads or for data that is already aligned. For raw paired-end reads,
it should be a tuple containing two strings giving the paths to the two
FASTA / FASTQ files.

## Command line usage

`seqalign` includes a couple of pre-built pipelines for aligning ChIP-seq and ATAC-seq data.
They rely on certain environment variables being set, as described [here](https://github.com/anthony-aylward/chipatac)
To see the basic command line documentation, simply enter `seqalign` at the terminal:

```
seqalign
```
```
There are two commands for aligning sequencing data:
`seqalign-chip-seq` and `seqalign-atac-seq`. See their
respective documentation by running:

seqalign-chip-seq --help
seqalign-atac-seq --help
```
pyQuASAR-genotype 0.1.30
Command line tool for genotyping with QuASAR

# pyQuASAR_genotype
Command line tool for genotyping with QuASAR. Infer genotypes from ChIP-seq or
ATAC-seq data.

## Installation

First, follow the installation steps for [pyQuASAR](https://github.com/anthony-aylward/pyQuASAR) and [wasp_map](https://github.com/anthony-aylward/wasp_map). Then:

```sh
pip3 install pyQuASAR_genotype
```
or
```sh
pip3 install --user pyQuASAR_genotype
```
pyQuASAR 1.0.2
Wrap quasar for pipelines

# pyQuASAR

Wrap quasar for pipelines

## Installation

First make sure you have followed the installation procedure for
[pydbsnp](https://github.com/anthony-aylward/pydbsnp). Then install `pyQuASAR`
with `pip3`:

```sh
pip3 install pyQuASAR
```
or
```sh
pip3 install --user pyQuASAR
```

Once pyQuASAR is installed, run `pyQuASAR-download` to download QuASAR and
the SNPs file.

```sh
pyQuASAR-download
```

Now `pyQuASAR` is ready to go!