semvec/pypi-packages huggingface dataset:
solvex 1.0.3
Solvability-Based Explainer
Requires Python: >=3.7

# Solvability-Based Explainer (solvex)

This package implements the model-agnostic explainer introduced in the EACL 2023 (Findings) paper [The Solvability of Interpretability Evaluation Metrics](https://arxiv.org/pdf/2205.08696.pdf). 

## Installation

This package can be installed with `pip install solvex`. 

## Usage

Please refer to the [project homepage](https://yilunzhou.github.io/solvability/) for toturials and documentation. In addition, sample jupyter notebooks are available in the `examples` folder.
bastion3clone 1.0.0
Binary classification for predicting whether proteins are secreted by the bacterial Type III secretion system based on combinations of three models trained on three different feature groups.
Requires Python: >=3.6

# Bastion 3 Clone

Binary classification for predicting whether proteins are secreted by the bacterial Type III secretion system based on 
combinations of three models trained on three different feature groups. This software is a reimplementation of the existing
software Bastion 3, which provides open access to the source code and is used as for a direct comparison with EffectiveT3.
buscophylo 1.3
BuscoPhylo is a free, online pipeline for performing BUSCO-based phylogenomic analysis. It quickly analyzes genome sequences in FASTA format and provides results ready for publication. The user-friendly interface makes it accessible for anyone to use.
Keywords: busco phylogenomic analysis

BuscoPhylo is a free online pipeline for phylogenomic analysis using BUSCO. It quickly analyzes FASTA formatted genome sequences and provides ready-to-publish results. The user-friendly interface makes it easy to use for anyone.

To access the BuscoPhylo API, you need to log in to the user dashboard and have an API token for authentication. Your API token can be found under your user name in the dashboard. To install the BuscoPhylo API, simply run "pip install buscophylo" in your terminal.

To use the BuscoPhylo API, import the buscophylo module, initiate an instance of the BuscoPhylo class, and set your API token, project name, lineage, mode, and directory. Finally, run the run function. Example code:

from buscophylo import BuscoPhylo

buscophylo = BuscoPhylo()

buscophylo.Token("YOUR_TOKEN")

buscophylo.Project_Name("Project_Name")

buscophylo.lineage("Lineage")

buscophylo.mode("Mode")

buscophylo.directory("Directory")

buscophylo.Project_groupe("outgroup") # optional

buscophylo.run()

If you use the BuscoPhylo API in your work, please cite it in your publication to acknowledge its contribution. BuscoPhylo is also available on PyPI at https://pypi.org/project/BuscoPhylo/.