semvec/pypi-packages huggingface dataset:
birdman 0.2.0
Framework for differential microbiome abundance using Bayesian inference
License: BSD-3-Clause

# BIRDMAn

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**B**ayesian **I**nferential **R**egression for **D**ifferential **M**icrobiome **An**alysis (**BIRDMAn**) is a framework for performing differential abundance analysis through Bayesian inference.

See the [documentation](https://birdman.readthedocs.io/en/stable/?badge=stable) for details on usage.

For an example of running BIRDMAn - see this [Google Colab notebook](https://colab.research.google.com/drive/1zT4eIgiz0Jl5TVmttE3gwWnrhNlPeYDc?usp=sharing).

## Installation

Currently BIRDMAn requires Python 3.8 or higher.

We recommend using [mamba](https://github.com/mamba-org/mamba) for installation of dependencies.

```bash
mamba install -c conda-forge biom-format patsy xarray arviz cmdstanpy
pip install birdman
```