semvec/pypi-packages huggingface dataset:
pyabf 2.3.8
Python library for reading files in Axon Binary Format (ABF)
License: MIT License
Requires Python: >=3.8

pyABF: a pure-Python ABF file reader
====================================

**pyABF** provides a Python interface to electrophysiology files in the Axon Binary Format (ABF).
pyABF supports Python 3 and does not use obscure libraries (just numpy and matplotlib). 
pyABF supports reading ABF1 and ABF2 files and can write ABF1 files.

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    .. image:: http://swharden.com/pyabf/graphics/action-potentials-small.png
        :alt: pyABF electrophysiology data analysis with Python and Matplotlib
        :align: center

Quickstart
==========

Install or upgrade pyABF:

.. code-block:: bash

    pip install --upgrade pyabf

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Access ABF sweep data:

.. code-block:: python

  import pyabf
  abf = pyabf.ABF("demo.abf")
  abf.setSweep(sweepNumber=3, channel=0)
  print(abf.sweepY) # displays sweep data (ADC)
  print(abf.sweepX) # displays sweep times (seconds)
  print(abf.sweepC) # displays command waveform (DAC)

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Plot a sweep with Matplotlib:

.. code-block:: python

  import pyabf
  import matplotlib.pyplot as plt
  abf = pyabf.ABF("demo.abf")
  abf.setSweep(14)
  plt.plot(abf.sweepX, abf.sweepY)
  plt.show()

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    .. image:: http://swharden.com/pyabf/graphics/pyabf-example-sweep.jpg
        :alt: pyABF Example
        :align: center

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Additional Examples
===================
Full pyabf API documentation, additional code examples, a pyabf cookbook, 
and low-level information about the ABF file format can be found at the pyABF 
project homepage: http://swharden.com/pyabf/

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    .. image:: http://swharden.com/pyabf/graphics/pyabf-example-action-potentials.jpg
        :alt: pyABF Example
        :align: center

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