semvec/pypi-packages huggingface dataset:
mr-toolkit 0.0.5
Tools for reweighted estimation of Markov models.
License: MIT
Requires Python: >=3.8

Markov Reweighting Toolkit
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* Author: John Russo
* Free software: MIT license
* Documentation: https://mr-toolkit.readthedocs.io

Tools for reweighting Markov models.

### Todo

- [ ] Remove `deeptime` dependency for kmeans -- replace with `sklearn`
- [x] Remove `msm_we` dependency for connected sets -- really heavy
- [ ] Replace `pyemma` dependencies with `deeptime` (probably want to write some tests first)
- [x] Sample NESS splicing + estimation notebook
- [x] Sample reweighting notebook
- [x] Sample Sigopt hyperparameter optimization notebook


### Copyright

Copyright (c) 2023, John Russo


#### Acknowledgements
 
Project based on the 
[Computational Molecular Science Python Cookiecutter](https://github.com/molssi/cookiecutter-cms) version 1.1.