semvec/pypi-packages huggingface dataset:
bamsalvage 0.1.7
Sequence salvaging script from corrupted BAM files
Requires Python: >=3.7

# bamsalvage
## INTRODUCTION
bamsalvage is a tools to recover sequence reads as much as possible from possibly corrupted BAM files.
This software share the common purpose with bamrescue by Jérémie Roquet (https://bamrescue.arkanosis.net/). 
bamrescue detects corrupted BGZF block using CRC32 checksums and skip corrupted blocks and the method works well if all blocks begin with new reads.

When we would like to recover long-read sequences, a read can span more than one BGZF blocks since the maximum block size is less than sequencer outputs.

Skipping corrupted blocks does not solve such the troubles and often results in termination of Samtools and failure of sequence recovery.

bamsalvage scans next available start positions when any corrupted blocks are detected.
Since the goal of the software is rescuing sequences, bamsalvage do not recover all information included in BAM file but retrieves reads and qual sequences.

## INSTALL
```
pip install bamsalvage
```

## USAGE
```
bamsalvage -i [FILE] -o {DIRECTORY] --mode [fa,fa.gz,fastq,fastq.gz] [--verbose]
```

```
Options:
  -i, --input <FILE>     Input BAM file
  -o, --output <FILE>    Output filename
  -l, --limit <integer>  Limiting counts [default: 0]
  --mode                 Output format (fa:fasta, fa.gz:gzipped fasta, fastq:fastq, fastq.gz(default):gzipped fastq)
  -v, --verbose          verbosity
  -h, --help             Print help
  ```
validator-and-token-generator 0.1.0
Python package for string validation and alphanumeric token generation
Requires Python: >=3

### Description
Validator_and_token_generator is a package created for a class project to validate certain strings such as credit/debit card numbers, and generate alphanumeric tokens.

### Install validator_and_token_generator from PyPi.
```bash
pip install validator_and_token_generator
```

#### Example
```python
  # Import library
  import validator_and_token_generator
  # Generate token
  _token = validator_and_token_generator.token_generator(length=10)
```
-------
TkUI 0.2.0
TkUI,是基于tkinter的Canvas模块开发的,具有现代化风格的UI库

TkUI
> TkUI,是基于tkinter的Canvas模块开发的,具有现代化风格的UI库


注意 目前还在开发中,请谨慎使用

### 快速安装

> pip install TkUI

### 示例

```python

```