semvec/pypi-packages huggingface dataset:
vessel-express-napari 0.0.9
A simple plugin for 3D vessel segmentation
License: BSD-3-Clause
Requires Python: >=3.7

# vessel-express-napari

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A simple plugin for 3D vessel segmentation of LSFM images

This [napari] plugin can be used to optimize the segmentation parameters for the [main VesselExpress software platform](https://github.com/RUB-Bioinf/VesselExpress).

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## Installation

The easiest way to install the plugin is to open napari, go to Plugins, then Install/Uninstall plugins. You will be able to find the plugin by name "vessel-express-napari". 

Or, you can install `vessel-express-napari` via [pip]:

    pip install vessel-express-napari


To install latest development version :

    pip install git+https://github.com/MMV-Lab/vessel-express-napari.git


## Documentation

We provide a [quick start guide] to explain the important pieces of this plugin. Suggestions and feature quests are very welcomed. 


## Contributing

Contributions are very welcome. Tests can be run with [tox], please ensure
the coverage at least stays the same before you submit a pull request.

## License

Distributed under the terms of the [BSD-3] license,
"vessel-express-napari" is free and open source software

## Issues

If you encounter any problems, please [file an issue] along with a detailed description.

[napari]: https://github.com/napari/napari
[Cookiecutter]: https://github.com/audreyr/cookiecutter
[@napari]: https://github.com/napari
[MIT]: http://opensource.org/licenses/MIT
[BSD-3]: http://opensource.org/licenses/BSD-3-Clause
[GNU GPL v3.0]: http://www.gnu.org/licenses/gpl-3.0.txt
[GNU LGPL v3.0]: http://www.gnu.org/licenses/lgpl-3.0.txt
[Apache Software License 2.0]: http://www.apache.org/licenses/LICENSE-2.0
[Mozilla Public License 2.0]: https://www.mozilla.org/media/MPL/2.0/index.txt
[cookiecutter-napari-plugin]: https://github.com/napari/cookiecutter-napari-plugin

[file an issue]: https://github.com/MMV-Lab/vessel-express-napari/issues

[napari]: https://github.com/napari/napari
[tox]: https://tox.readthedocs.io/en/latest/
[pip]: https://pypi.org/project/pip/
[PyPI]: https://pypi.org/
[quick start guide]: https://github.com/MMV-Lab/vessel-express-napari/blob/main/quick_start.md