semvec/pypi-packages huggingface dataset:
Truvari 4.1.0
Structural variant comparison tool for VCFs
License: MIT

[![PyPI version](https://badge.fury.io/py/Truvari.svg)](https://badge.fury.io/py/Truvari)
[![pylint](imgs/pylint.svg)](https://github.com/acenglish/truvari/actions/workflows/pylint.yml)
[![FuncTests](https://github.com/acenglish/truvari/actions/workflows/func_tests.yml/badge.svg?branch=develop&event=push)](https://github.com/acenglish/truvari/actions/workflows/func_tests.yml)
[![coverage](imgs/coverage.svg)](https://github.com/acenglish/truvari/actions/workflows/func_tests.yml)
[![develop](https://img.shields.io/github/commits-since/acenglish/truvari/v4.0.0)](https://github.com/ACEnglish/truvari/compare/v4.0.0...develop)
[![Downloads](https://pepy.tech/badge/truvari)](https://pepy.tech/project/truvari)

![Logo](https://raw.githubusercontent.com/ACEnglish/truvari/develop/imgs/BoxScale1_DarkBG.png)  
Toolkit for benchmarking, merging, and annotating Structural Variants

📚 [WIKI page](https://github.com/acenglish/truvari/wiki) has detailed documentation.  
📈 See [Updates](https://github.com/acenglish/truvari/wiki/Updates) on new versions.  
📝 Read our [Paper](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02840-6) to learn more.

## 💻 Installation
Truvari uses Python 3.6+ and can be installed with pip:
```
  python3 -m pip install Truvari 
```
For details and more installation options, see [Installation](https://github.com/acenglish/truvari/wiki/Installation) on the wiki.

## ⏩ Quick Start

Each sub-command contains help documentation. Start with `truvari -h` to see available commands.

The current most common Truvari use case is for structural variation benchmarking:
```
  truvari bench -b base.vcf.gz -c comp.vcf.gz -o output_dir/
```
## 🧬 Truvari Commands

 - [bench](https://github.com/acenglish/truvari/wiki/bench) - Performance metrics from comparison of two VCFs
 - [collapse](https://github.com/acenglish/truvari/wiki/collapse) - Collapse possibly redundant VCF entries
 - [anno](https://github.com/acenglish/truvari/wiki/anno) - Add SV annotations to a VCF
 - [consistency](https://github.com/acenglish/truvari/wiki/consistency) - Consistency report between multiple VCFs
 - [vcf2df](https://github.com/acenglish/truvari/wiki/vcf2df) - Turn a VCF into a pandas DataFrame
 - [segment](https://github.com/acenglish/truvari/wiki/segment) - Normalization of SVs into disjointed genomic regions
 - [stratify](https://github.com/acenglish/truvari/wiki/stratify) - Count variants per-region in vcf
 - [divide](https://github.com/ACEnglish/truvari/wiki/divide) - Divide a VCF into independent shards
 - [phab](https://github.com/ACEnglish/truvari/wiki/phab) - Harmonize variant representations using MSA
 - [refine](https://github.com/ACEnglish/truvari/wiki/refine) - Automated bench result refinement with phab

## 🔎 More Information

All documentation about Truvari is on the [WIKI](https://github.com/acenglish/truvari/wiki). Additional information about using Truvari can be found in [Discussions](https://github.com/ACEnglish/truvari/discussions)
dE84 0.0.1
To calculate d_Ecmc using L,a,B values
License: MIT
Keywords: dE

Pass the object as

dEcmc = cie84(standard, immitation)

where standard contains three numerical values of L,A,B
while immitation contains three numerical values of immitation values of L,A,B.
EXAMPLE:

immitation = (47.5, 1.2, -36.5)
standard = (48, 1.4, -36)

dEcmc = cie84(standard, immitation)


Change Log
==========

1.0.0 (7/08/2023)
------------------
-First Release
CIE-84 0.0.2
To calculate d_Ecmc using L,a,B values
License: MIT
Keywords: CIE_84

Pass the object as

dEcmc = cie84(standard, immitation)

where standard contains three numerical values of L,A,B
while immitation contains three numerical values of immitation values of L,A,B.
EXAMPLE:

immitation = (47.5, 1.2, -36.5)
standard = (48, 1.4, -36)

dEcmc = cie84(standard, immitation)


Change Log
==========

1.0.0 (7/08/2023)
------------------
-First Release
sockets-communication 1.4.4
This module provides a wrapper for the built-in socket module in python. The program provides server and. client classes, with the communication methods.
License: MIT

# sockets-communication

This module provides a wrapper for the built-in socket module in python. The program provides server and.
client classes, with the communication methods.

first of all
------------

### credits:
- writen and owned by:
  Shahaf Frank-Shapir

- all the rights are saved for:
  Shahaf Frank-Shapir

- programming language:
  python 3.8.6 (100%)

before we start
---------------

### description:
- This module provides a wrapper for the built-in socket module in python. The program provides server and.
  client classes, with the communication methods.

### dependencies:
- opening:
  As for this is a really complex program, which uses a lot of modules, there are required dependencies needed
  in order to run the program. keep in mined the program was writen in python 3.8.6, so any python version lower
  than 3.9.2 might not work properly. Moreover, built-in python modules are being used, so keep that in mind.

run the app
-----------

#### run from windows command line (inside the project directory)
- run with python (3.6.0 or higher) by writing to the command line in the project directory:
````
python server.py
python client.py
python test.py
````
micropython-adt7410 0.2.0
MicroPython Driver for the Analog Devices ADT7410 Temperature Sensor
License: MIT
Keywords: sensor,adt7410,temperature,driver,micropython

Introduction
============


.. image:: https://img.shields.io/badge/micropython-Ok-purple.svg
    :target: https://micropython.org
    :alt: micropython

.. image:: https://readthedocs.org/projects/micropython-adt7410/badge/?version=latest
    :target: https://micropython-adt7410.readthedocs.io/en/latest/
    :alt: Documentation Status


.. image:: https://img.shields.io/pypi/v/micropython-adt7410.svg
    :alt: latest version on PyPI
    :target: https://pypi.python.org/pypi/micropython-adt7410

.. image:: https://static.pepy.tech/personalized-badge/micropython-adt7410?period=total&units=international_system&left_color=grey&right_color=blue&left_text=Pypi%20Downloads
    :alt: Total PyPI downloads
    :target: https://pepy.tech/project/micropython-adt7410

.. image:: https://img.shields.io/badge/code%20style-black-000000.svg
    :target: https://github.com/psf/black
    :alt: Code Style: Black

MicroPython Driver for the Analog Devices ADT7410 Temperature Sensor


Installing with mip
====================
To install using mpremote

.. code-block:: shell

    mpremote mip install github:jposada202020/MicroPython_ADT7410

To install directly using a WIFI capable board

.. code-block:: shell

    mip install github:jposada202020/MicroPython_ADT7410


Installing Library Examples
============================

If you want to install library examples:

.. code-block:: shell

    mpremote mip install github:jposada202020/MicroPython_ADT7410/examples.json

To install directly using a WIFI capable board

.. code-block:: shell

    mip install github:jposada202020/MicroPython_ADT7410/examples.json


Installing from PyPI
=====================

On supported GNU/Linux systems like the Raspberry Pi, you can install the driver locally `from
PyPI <https://pypi.org/project/micropython-adt7410/>`_.
To install for current user:

.. code-block:: shell

    pip3 install micropython-adt7410

To install system-wide (this may be required in some cases):

.. code-block:: shell

    sudo pip3 install micropython-adt7410

To install in a virtual environment in your current project:

.. code-block:: shell

    mkdir project-name && cd project-name
    python3 -m venv .venv
    source .env/bin/activate
    pip3 install micropython-adt7410


Usage Example
=============

Take a look at the examples directory

Documentation
=============
API documentation for this library can be found on `Read the Docs <https://micropython-adt7410.readthedocs.io/en/latest/>`_.